Query 026188
Match_columns 242
No_of_seqs 119 out of 395
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.5 7.9E-15 2.7E-19 107.1 1.9 56 125-192 5-60 (63)
2 4gat_A Nitrogen regulatory pro 99.4 1.5E-14 5.2E-19 106.2 1.0 55 124-190 6-60 (66)
3 2vut_I AREA, nitrogen regulato 99.3 9.9E-14 3.4E-18 94.6 0.6 33 136-175 5-37 (43)
4 1gnf_A Transcription factor GA 99.3 1.5E-13 5.2E-18 94.9 1.5 38 127-176 4-41 (46)
5 2kae_A GATA-type transcription 99.3 6.3E-13 2.2E-17 99.0 1.3 43 126-179 7-49 (71)
6 4hc9_A Trans-acting T-cell-spe 99.3 8E-13 2.7E-17 105.0 1.0 56 126-193 58-113 (115)
7 4hc9_A Trans-acting T-cell-spe 98.9 2.1E-10 7E-15 91.1 1.2 39 126-176 4-42 (115)
8 2yrk_A Zinc finger homeobox pr 31.7 12 0.00042 26.8 0.5 20 149-173 7-26 (55)
9 2yrc_A Protein transport prote 17.7 29 0.001 24.3 0.2 34 126-170 8-43 (59)
10 2lvu_A Zinc finger and BTB dom 21.6 29 0.001 17.5 0.0 12 162-173 4-15 (26)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.47 E-value=7.9e-15 Score=107.10 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=43.0
Q ss_pred CCccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhhhhccchhhhhccc
Q 026188 125 LVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQTSRQQRSSH 192 (242)
Q Consensus 125 ~~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~~~~~tsr~~r~sh 192 (242)
.....| .+|+++.||+| |+||+|+ +|||||||+|++.............++.|++.
T Consensus 5 ~~~~~C-----~~C~tt~Tp~W-R~gp~G~------~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 5 RAGTSC-----ANCQTTTTTLW-RRNANGD------PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp CTTCCC-----TTTCCSCCSSC-CCCTTSC------CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCCCcC-----CCcCCCCCCcc-CCCCCCC------chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 345678 99999999999 9999997 59999999999987655555555555555544
No 2
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.43 E-value=1.5e-14 Score=106.22 Aligned_cols=55 Identities=13% Similarity=0.040 Sum_probs=42.4
Q ss_pred CCCccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhhhhccchhhhhc
Q 026188 124 PLVAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQTSRQQRS 190 (242)
Q Consensus 124 p~~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~~~~~tsr~~r~ 190 (242)
+.....| .+|++++||+| |+||+|. +||||||++|++.............++.|+
T Consensus 6 ~~~~~~C-----~~C~t~~Tp~W-R~gp~G~------~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~ 60 (66)
T 4gat_A 6 QNGPTTC-----TNCFTQTTPLW-RRNPEGQ------PLCNACGLFLKLHGVVRPLSLKTDVIKKRN 60 (66)
T ss_dssp SSSSCCC-----TTTCCCCCSSC-EEETTTE------EECHHHHHHHHHHCSCCCGGGCCSCCCCCC
T ss_pred CCCCCCC-----CCCCCCCCCcC-CcCCCCC------CccHHHHHHHHHcCCCCchhhccccccccc
Confidence 3456889 99999999999 9999997 599999999998766555554444444333
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.35 E-value=9.9e-14 Score=94.59 Aligned_cols=33 Identities=18% Similarity=0.052 Sum_probs=30.4
Q ss_pred CCcccCCCCccccCCCCccccccchhhhhhhhhhhcccch
Q 026188 136 PAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEP 175 (242)
Q Consensus 136 ~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~ 175 (242)
.+|+++.||+| |+||+|+ .||||||+|||+...
T Consensus 5 ~~C~tt~Tp~W-R~gp~G~------~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 5 TNCFTQTTPLW-RRNPEGQ------PLCNACGLFLKLHGV 37 (43)
T ss_dssp SSSCCCCCSCC-EECTTSC------EECHHHHHHHHHHSS
T ss_pred CccCCCCCCcc-ccCCCCC------cccHHHHHHHHHhCC
Confidence 99999999999 9999997 599999999998654
No 4
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.35 E-value=1.5e-13 Score=94.90 Aligned_cols=38 Identities=24% Similarity=0.107 Sum_probs=33.4
Q ss_pred ccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchh
Q 026188 127 AAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQ 176 (242)
Q Consensus 127 ~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r 176 (242)
...| .+|++++||+| |+||+|+ .||||||||||+....
T Consensus 4 ~~~C-----~~C~tt~Tp~W-R~gp~G~------~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 4 AREC-----VNCGATATPLW-RRDRTGH------YLCNACGLYHKMNGQN 41 (46)
T ss_dssp SCCC-----TTTCCCCCSSC-BCCTTCC------CBCSHHHHHHHHTCSC
T ss_pred CCCC-----CCcCCCCCCcC-ccCCCCC------ccchHHHHHHHHcCCC
Confidence 4678 99999999999 9999996 5999999999987643
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.27 E-value=6.3e-13 Score=99.00 Aligned_cols=43 Identities=7% Similarity=-0.137 Sum_probs=33.0
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhh
Q 026188 126 VAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQM 179 (242)
Q Consensus 126 ~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~ 179 (242)
....| .+|+|+.||+| |+||.+.. +|||||||||++....+..
T Consensus 7 ~~~~C-----~nC~tt~Tp~W-Rrg~~~~g-----~LCNACGl~~~~~~~~RP~ 49 (71)
T 2kae_A 7 KSFQC-----SNCSVTETIRW-RNIRSKEG-----IQCNACFIYQRKYNKTRPV 49 (71)
T ss_dssp -CCCC-----SSSCCSCCSSC-CCCSSSSC-----CCSSHHHHHHHHHHSCCCT
T ss_pred CCCcC-----CccCCCCCCcc-ccCCCCCC-----ccchHHHHHHHHhCCCCCc
Confidence 45778 99999999999 88544433 6999999999986554443
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.25 E-value=8e-13 Score=104.98 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=44.5
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchhhhhhhccchhhhhcccc
Q 026188 126 VAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQQQMQTAQTSRQQRSSHM 193 (242)
Q Consensus 126 ~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r~~~~~~~tsr~~r~shm 193 (242)
....| .+|+++.||+| |+||+| + +||||||++|++....+........++.|++.+
T Consensus 58 ~~~~C-----~~C~t~~tp~W-Rr~~~g-~-----~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~ 113 (115)
T 4hc9_A 58 AGTSC-----ANCQTTTTTLW-RRNANG-D-----PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM 113 (115)
T ss_dssp TTCCC-----TTTCCSCCSSC-EECTTS-C-----EECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred ccccC-----CCcCCCCccee-EECCCC-C-----CcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence 45788 99999999999 999999 6 799999999998877766666666666666544
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=98.91 E-value=2.1e-10 Score=91.13 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=32.1
Q ss_pred CccccCCCCCCCcccCCCCccccCCCCccccccchhhhhhhhhhhcccchh
Q 026188 126 VAAPAMIPSSPAVVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRRKREEPQ 176 (242)
Q Consensus 126 ~~~~c~~~~~~~C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~kk~~~r 176 (242)
+++.| .+|+++.||+| |+||+|. .||||||++|++....
T Consensus 4 ~~~~C-----~~Cg~~~Tp~W-Rr~~~g~------~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 4 MGREC-----VNCGATSTPLW-RRDGTGH------YLCNACGLYHKMNGQN 42 (115)
T ss_dssp --CCC-----TTTCCSCCSSC-EECTTSC------EECHHHHHHHHHHSSC
T ss_pred CCCCC-----CCCCCccCCcc-eECCCCC------CcCcchhhhhhhcccc
Confidence 45788 99999999999 8899994 6999999999865433
No 8
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=31.72 E-value=12 Score=26.79 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=16.9
Q ss_pred CCCCccccccchhhhhhhhhhhccc
Q 026188 149 FGETVLEAQSHYAMLVEFGSRRKRE 173 (242)
Q Consensus 149 ~Gp~g~~~~~~~tLCNACGlr~kk~ 173 (242)
.+|+||+ +-|.-||..|.-.
T Consensus 7 ~~~~~P~-----~eC~lC~vkYs~r 26 (55)
T 2yrk_A 7 GGTDGTK-----PECTLCGVKYSAR 26 (55)
T ss_dssp CCCCCCC-----SCCTTTTCCCCSS
T ss_pred CCCCCCC-----ccccccCcccccc
Confidence 5789998 8999999998644
No 9
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=17.68 E-value=29 Score=24.31 Aligned_cols=34 Identities=9% Similarity=-0.113 Sum_probs=28.0
Q ss_pred CccccCCCCCCC--cccCCCCccccCCCCccccccchhhhhhhhhhh
Q 026188 126 VAAPAMIPSSPA--VVLTVTPLLHRFGETVLEAQSHYAMLVEFGSRR 170 (242)
Q Consensus 126 ~~~~c~~~~~~~--C~tt~TPlW~R~Gp~g~~~~~~~tLCNACGlr~ 170 (242)
..-+| .. |.+--.|.+ +....|.. +.||-|+.+-
T Consensus 8 ~pvRC-----~r~~CraylNP~~-~~~~~~~~-----W~C~~C~~~N 43 (59)
T 2yrc_A 8 EPVLC-----SRTTCRAVLNPLC-QVDYRAKL-----WACNFCYQRN 43 (59)
T ss_dssp CCCBC-----SCTTTCCBCCTTS-EEEGGGTE-----EECSSSCCEE
T ss_pred CCccc-----CCCCCCeEECCce-EEECCCCE-----EEcccCCCcC
Confidence 34577 76 999999999 88877877 8999999764
No 10
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=21.62 E-value=29 Score=17.52 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=9.7
Q ss_pred hhhhhhhhhccc
Q 026188 162 MLVEFGSRRKRE 173 (242)
Q Consensus 162 LCNACGlr~kk~ 173 (242)
.|+.||..|...
T Consensus 4 ~C~~C~k~f~~~ 15 (26)
T 2lvu_A 4 VCERCGKRFVQS 15 (26)
Confidence 699999988754
Done!