Query 026189
Match_columns 242
No_of_seqs 207 out of 1463
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 5.6E-18 1.2E-22 138.2 12.8 83 138-228 32-114 (144)
2 TIGR01659 sex-lethal sex-letha 99.7 3.1E-16 6.8E-21 144.6 15.2 84 137-228 104-187 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.7E-16 1.5E-20 140.9 13.4 82 138-227 267-348 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.1E-16 6.8E-21 143.1 10.7 82 139-228 2-83 (352)
5 PF00076 RRM_1: RNA recognitio 99.7 5.9E-16 1.3E-20 108.5 8.7 68 143-214 1-68 (70)
6 TIGR01659 sex-lethal sex-letha 99.6 7.7E-15 1.7E-19 135.4 12.0 83 139-227 192-274 (346)
7 KOG0121 Nuclear cap-binding pr 99.6 7.7E-15 1.7E-19 116.3 7.6 83 137-227 33-115 (153)
8 KOG0107 Alternative splicing f 99.6 1.2E-14 2.5E-19 120.6 8.9 79 139-230 9-87 (195)
9 KOG0125 Ataxin 2-binding prote 99.6 8.7E-15 1.9E-19 131.3 8.5 80 137-226 93-172 (376)
10 KOG0122 Translation initiation 99.6 1.2E-14 2.6E-19 126.0 8.7 82 138-227 187-268 (270)
11 TIGR01645 half-pint poly-U bin 99.5 3E-14 6.5E-19 139.2 11.6 82 139-228 203-284 (612)
12 PLN03120 nucleic acid binding 99.5 4.3E-14 9.4E-19 124.7 10.8 77 140-228 4-80 (260)
13 KOG0113 U1 small nuclear ribon 99.5 7.3E-14 1.6E-18 124.0 11.1 96 136-239 97-199 (335)
14 KOG0149 Predicted RNA-binding 99.5 2.5E-14 5.5E-19 123.4 7.6 81 138-227 10-90 (247)
15 TIGR01645 half-pint poly-U bin 99.5 6.5E-14 1.4E-18 136.9 10.0 82 138-227 105-186 (612)
16 PF14259 RRM_6: RNA recognitio 99.5 1.6E-13 3.5E-18 97.1 9.1 68 143-214 1-68 (70)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.9E-13 4.2E-18 130.8 12.1 82 138-227 293-374 (509)
18 TIGR01622 SF-CC1 splicing fact 99.5 1.2E-13 2.7E-18 130.5 10.6 81 139-227 185-265 (457)
19 TIGR01648 hnRNP-R-Q heterogene 99.5 2E-13 4.2E-18 133.1 11.2 82 137-226 55-136 (578)
20 KOG0105 Alternative splicing f 99.5 8.4E-14 1.8E-18 116.7 7.3 80 138-228 4-83 (241)
21 TIGR01628 PABP-1234 polyadenyl 99.5 1.8E-13 4E-18 133.0 10.3 77 142-226 2-78 (562)
22 TIGR01628 PABP-1234 polyadenyl 99.5 2.5E-13 5.5E-18 132.0 11.0 81 138-227 283-363 (562)
23 smart00362 RRM_2 RNA recogniti 99.5 4.3E-13 9.3E-18 92.5 8.6 71 142-222 1-71 (72)
24 KOG0148 Apoptosis-promoting RN 99.4 3.2E-13 6.9E-18 118.7 9.3 78 137-228 161-238 (321)
25 KOG0144 RNA-binding protein CU 99.4 6.9E-14 1.5E-18 129.3 5.3 100 124-229 108-207 (510)
26 KOG4207 Predicted splicing fac 99.4 2.6E-13 5.6E-18 115.4 7.8 86 135-228 8-93 (256)
27 PLN03213 repressor of silencin 99.4 4.9E-13 1.1E-17 125.6 9.4 78 138-227 8-87 (759)
28 PLN03121 nucleic acid binding 99.4 8.7E-13 1.9E-17 115.1 9.9 77 139-227 4-80 (243)
29 TIGR01622 SF-CC1 splicing fact 99.4 9E-13 2E-17 124.6 10.7 82 137-227 86-167 (457)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.2E-12 2.6E-17 125.5 11.3 79 137-228 272-351 (481)
31 KOG0144 RNA-binding protein CU 99.4 8.1E-13 1.8E-17 122.3 9.3 89 137-230 31-119 (510)
32 COG0724 RNA-binding proteins ( 99.4 1.2E-12 2.6E-17 111.1 9.8 79 140-226 115-193 (306)
33 TIGR01648 hnRNP-R-Q heterogene 99.4 1.3E-12 2.9E-17 127.3 11.2 74 139-228 232-307 (578)
34 smart00360 RRM RNA recognition 99.4 1.7E-12 3.6E-17 89.1 8.1 71 145-223 1-71 (71)
35 KOG0111 Cyclophilin-type pepti 99.4 2E-13 4.3E-18 117.1 3.6 85 138-230 8-92 (298)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.4E-12 3.1E-17 125.0 10.0 75 139-227 1-77 (481)
37 KOG0145 RNA-binding protein EL 99.4 2.2E-12 4.7E-17 113.1 10.1 84 137-228 38-121 (360)
38 KOG0126 Predicted RNA-binding 99.4 7.2E-14 1.6E-18 116.7 0.5 82 139-228 34-115 (219)
39 cd00590 RRM RRM (RNA recogniti 99.4 4.6E-12 1E-16 87.7 9.6 74 142-224 1-74 (74)
40 KOG0117 Heterogeneous nuclear 99.4 2.7E-12 5.8E-17 119.3 10.5 83 137-226 80-162 (506)
41 KOG0148 Apoptosis-promoting RN 99.3 3.5E-12 7.6E-17 112.2 8.1 88 140-238 62-149 (321)
42 KOG0114 Predicted RNA-binding 99.3 1.2E-11 2.5E-16 95.0 9.9 80 136-226 14-93 (124)
43 KOG0108 mRNA cleavage and poly 99.3 3.1E-12 6.8E-17 120.8 8.0 80 141-228 19-98 (435)
44 KOG0109 RNA-binding protein LA 99.3 2.4E-12 5.3E-17 114.2 6.3 80 141-236 3-82 (346)
45 KOG0130 RNA-binding protein RB 99.3 5.7E-12 1.2E-16 100.9 7.5 83 138-228 70-152 (170)
46 KOG0117 Heterogeneous nuclear 99.2 1.2E-11 2.6E-16 115.0 7.3 76 139-230 258-333 (506)
47 PF13893 RRM_5: RNA recognitio 99.2 4.1E-11 9E-16 81.7 7.8 56 157-225 1-56 (56)
48 KOG0153 Predicted RNA-binding 99.2 3.2E-11 6.9E-16 109.2 8.8 106 106-227 196-302 (377)
49 KOG4206 Spliceosomal protein s 99.2 3.9E-11 8.4E-16 103.2 8.9 81 139-230 8-92 (221)
50 KOG0131 Splicing factor 3b, su 99.2 1.2E-11 2.6E-16 103.3 5.4 110 121-239 77-187 (203)
51 KOG1457 RNA binding protein (c 99.2 2.1E-10 4.6E-15 98.8 12.9 88 137-228 31-118 (284)
52 KOG0127 Nucleolar protein fibr 99.2 5.8E-11 1.3E-15 112.8 8.0 80 139-227 116-195 (678)
53 KOG0146 RNA-binding protein ET 99.2 3.8E-11 8.2E-16 105.8 5.5 84 136-227 281-364 (371)
54 KOG0127 Nucleolar protein fibr 99.2 1.6E-10 3.4E-15 109.9 10.0 83 136-226 288-376 (678)
55 TIGR01642 U2AF_lg U2 snRNP aux 99.1 1.2E-10 2.5E-15 111.6 8.9 75 137-226 172-258 (509)
56 KOG0131 Splicing factor 3b, su 99.1 7.1E-11 1.5E-15 98.8 6.2 82 137-226 6-87 (203)
57 KOG0124 Polypyrimidine tract-b 99.1 4.7E-11 1E-15 108.9 5.0 78 140-225 113-190 (544)
58 KOG0132 RNA polymerase II C-te 99.1 1.2E-10 2.6E-15 114.2 7.5 77 139-229 420-496 (894)
59 KOG0145 RNA-binding protein EL 99.1 4.3E-10 9.3E-15 98.9 10.1 83 137-227 275-357 (360)
60 KOG0109 RNA-binding protein LA 99.1 8E-11 1.7E-15 104.6 5.5 76 137-228 75-150 (346)
61 smart00361 RRM_1 RNA recogniti 99.1 3.4E-10 7.3E-15 80.9 7.5 63 154-222 2-69 (70)
62 KOG0146 RNA-binding protein ET 99.1 3.6E-10 7.8E-15 99.6 7.9 84 139-228 18-101 (371)
63 KOG0123 Polyadenylate-binding 99.0 5.4E-10 1.2E-14 104.1 8.5 92 118-226 60-151 (369)
64 KOG0415 Predicted peptidyl pro 99.0 3.1E-10 6.7E-15 103.3 6.6 83 137-227 236-318 (479)
65 KOG0147 Transcriptional coacti 99.0 2.6E-10 5.7E-15 108.3 6.4 78 142-227 280-357 (549)
66 KOG4212 RNA-binding protein hn 99.0 6.2E-10 1.3E-14 103.6 7.9 81 138-227 42-123 (608)
67 KOG4208 Nucleolar RNA-binding 99.0 8.8E-10 1.9E-14 93.8 8.2 83 137-227 46-129 (214)
68 KOG0124 Polypyrimidine tract-b 99.0 7.1E-10 1.5E-14 101.3 5.0 104 115-226 181-288 (544)
69 KOG0110 RNA-binding protein (R 98.9 5.5E-09 1.2E-13 101.9 9.0 81 141-226 516-596 (725)
70 KOG0110 RNA-binding protein (R 98.8 2.5E-09 5.4E-14 104.3 5.1 81 139-227 612-692 (725)
71 KOG4212 RNA-binding protein hn 98.8 4E-08 8.8E-13 91.7 12.2 76 137-225 533-608 (608)
72 KOG0116 RasGAP SH3 binding pro 98.8 2.5E-08 5.4E-13 94.0 8.5 81 138-227 286-366 (419)
73 KOG0123 Polyadenylate-binding 98.7 4.1E-08 8.8E-13 91.6 7.9 72 141-226 2-73 (369)
74 KOG4205 RNA-binding protein mu 98.7 1.8E-08 3.8E-13 91.8 4.8 72 139-214 5-76 (311)
75 KOG1548 Transcription elongati 98.7 1.3E-07 2.7E-12 86.1 9.8 85 137-230 131-223 (382)
76 KOG0533 RRM motif-containing p 98.6 1.2E-07 2.6E-12 83.5 8.3 83 137-228 80-162 (243)
77 KOG0151 Predicted splicing reg 98.6 5.2E-08 1.1E-12 95.3 6.4 86 137-227 171-256 (877)
78 KOG0106 Alternative splicing f 98.6 4.5E-08 9.8E-13 84.6 4.7 72 141-228 2-73 (216)
79 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.1E-07 2.5E-12 91.2 7.8 82 139-228 404-485 (940)
80 KOG4660 Protein Mei2, essentia 98.6 4.2E-08 9E-13 93.7 4.6 70 137-214 72-141 (549)
81 KOG1457 RNA binding protein (c 98.5 1E-07 2.2E-12 82.5 3.8 70 137-213 207-276 (284)
82 KOG4454 RNA binding protein (R 98.5 6.1E-08 1.3E-12 83.5 1.8 80 137-226 6-85 (267)
83 KOG4205 RNA-binding protein mu 98.5 4.3E-07 9.3E-12 82.8 7.4 79 139-226 96-174 (311)
84 KOG4206 Spliceosomal protein s 98.4 2.2E-06 4.8E-11 74.0 9.3 78 137-226 143-220 (221)
85 KOG4209 Splicing factor RNPS1, 98.4 1.3E-06 2.9E-11 76.6 7.7 82 137-227 98-179 (231)
86 PF04059 RRM_2: RNA recognitio 98.1 1.9E-05 4.1E-10 60.4 9.1 84 141-228 2-87 (97)
87 KOG0226 RNA-binding proteins [ 98.1 3.5E-06 7.7E-11 74.1 4.6 73 139-214 189-261 (290)
88 KOG0120 Splicing factor U2AF, 98.1 3.2E-06 6.9E-11 81.2 4.5 83 137-227 286-368 (500)
89 PF11608 Limkain-b1: Limkain b 98.0 3.4E-05 7.3E-10 57.4 7.7 71 141-228 3-77 (90)
90 KOG1190 Polypyrimidine tract-b 97.9 7.9E-05 1.7E-09 69.5 9.9 75 140-227 297-372 (492)
91 PF08777 RRM_3: RNA binding mo 97.8 6.1E-05 1.3E-09 58.3 6.6 59 141-208 2-60 (105)
92 KOG1190 Polypyrimidine tract-b 97.7 7.3E-05 1.6E-09 69.7 6.6 79 138-227 412-490 (492)
93 KOG0147 Transcriptional coacti 97.7 1.5E-05 3.3E-10 76.4 1.1 81 137-226 176-256 (549)
94 KOG1456 Heterogeneous nuclear 97.6 0.00019 4.2E-09 66.4 7.8 78 139-227 119-198 (494)
95 KOG0129 Predicted RNA-binding 97.6 0.00013 2.8E-09 69.7 6.8 68 138-206 257-327 (520)
96 KOG1995 Conserved Zn-finger pr 97.6 5.4E-05 1.2E-09 69.4 3.9 82 138-227 64-153 (351)
97 KOG4210 Nuclear localization s 97.5 0.00016 3.4E-09 65.5 5.7 80 139-227 183-263 (285)
98 KOG0106 Alternative splicing f 97.5 8.1E-05 1.8E-09 64.6 3.2 72 137-224 96-167 (216)
99 KOG4211 Splicing factor hnRNP- 97.5 0.00043 9.3E-09 65.9 8.0 58 141-204 11-68 (510)
100 COG5175 MOT2 Transcriptional r 97.4 0.00052 1.1E-08 62.9 7.2 83 139-226 113-201 (480)
101 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00046 1E-08 46.8 4.8 52 141-202 2-53 (53)
102 KOG1855 Predicted RNA-binding 97.3 0.00035 7.5E-09 65.6 5.0 71 138-208 229-309 (484)
103 KOG4307 RNA binding protein RB 97.2 0.0062 1.3E-07 60.5 12.7 75 141-224 868-943 (944)
104 KOG2314 Translation initiation 97.2 0.0013 2.7E-08 63.8 7.7 76 140-223 58-139 (698)
105 KOG0112 Large RNA-binding prot 97.2 0.00056 1.2E-08 69.1 5.3 86 137-234 452-537 (975)
106 KOG4849 mRNA cleavage factor I 97.1 0.00043 9.3E-09 63.6 3.8 71 141-214 81-153 (498)
107 KOG1456 Heterogeneous nuclear 96.9 0.0072 1.6E-07 56.2 9.6 79 137-228 284-363 (494)
108 KOG4676 Splicing factor, argin 96.8 0.0012 2.6E-08 61.5 4.1 72 142-214 9-80 (479)
109 KOG4211 Splicing factor hnRNP- 96.8 0.0069 1.5E-07 57.9 8.8 61 140-204 103-164 (510)
110 KOG0129 Predicted RNA-binding 96.7 0.0035 7.6E-08 60.1 6.6 66 136-204 366-432 (520)
111 KOG0128 RNA-binding protein SA 96.7 0.00088 1.9E-08 67.4 2.2 80 140-228 736-815 (881)
112 KOG2416 Acinus (induces apopto 96.6 0.0019 4.2E-08 62.9 4.0 80 136-226 440-520 (718)
113 KOG0120 Splicing factor U2AF, 96.6 0.0073 1.6E-07 58.4 7.4 64 156-225 425-489 (500)
114 KOG3152 TBP-binding protein, a 96.4 0.0022 4.8E-08 56.7 2.7 76 139-214 73-157 (278)
115 PF08675 RNA_bind: RNA binding 96.3 0.02 4.4E-07 42.6 7.0 56 139-206 8-63 (87)
116 KOG2193 IGF-II mRNA-binding pr 96.0 0.0045 9.7E-08 58.4 2.4 71 141-227 2-75 (584)
117 PF05172 Nup35_RRM: Nup53/35/4 95.9 0.029 6.3E-07 43.1 6.4 79 139-226 5-90 (100)
118 KOG0112 Large RNA-binding prot 95.9 0.0024 5.2E-08 64.7 0.2 79 138-225 370-448 (975)
119 KOG1548 Transcription elongati 95.7 0.032 7E-07 51.4 7.0 75 139-225 264-349 (382)
120 KOG1365 RNA-binding protein Fu 95.5 0.08 1.7E-06 49.6 8.6 59 142-204 163-225 (508)
121 PF07576 BRAP2: BRCA1-associat 95.4 0.24 5.3E-06 38.6 10.1 78 138-220 11-89 (110)
122 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.028 6.1E-07 47.3 5.1 88 138-227 5-97 (176)
123 KOG0128 RNA-binding protein SA 95.3 0.0022 4.7E-08 64.7 -2.3 69 140-211 667-735 (881)
124 KOG1996 mRNA splicing factor [ 95.2 0.06 1.3E-06 48.8 6.6 66 154-226 300-365 (378)
125 PF10309 DUF2414: Protein of u 95.0 0.093 2E-06 36.9 5.9 55 140-205 5-62 (62)
126 KOG0115 RNA-binding protein p5 94.9 0.029 6.4E-07 49.8 3.7 62 141-206 32-93 (275)
127 KOG0105 Alternative splicing f 94.8 0.25 5.5E-06 42.2 8.9 63 140-212 115-177 (241)
128 PF08952 DUF1866: Domain of un 94.7 0.088 1.9E-06 43.1 5.8 54 156-226 52-105 (146)
129 KOG2068 MOT2 transcription fac 94.3 0.018 3.8E-07 52.8 1.0 80 140-226 77-161 (327)
130 KOG2202 U2 snRNP splicing fact 94.1 0.027 5.8E-07 50.0 1.7 61 157-226 85-146 (260)
131 PF04847 Calcipressin: Calcipr 94.1 0.094 2E-06 44.6 5.0 60 153-226 8-69 (184)
132 KOG2253 U1 snRNP complex, subu 94.0 0.082 1.8E-06 52.4 5.0 67 136-214 36-102 (668)
133 KOG4307 RNA binding protein RB 93.9 0.053 1.1E-06 54.1 3.5 81 134-223 428-509 (944)
134 KOG1365 RNA-binding protein Fu 93.4 0.13 2.7E-06 48.3 4.9 73 138-214 278-353 (508)
135 KOG2591 c-Mpl binding protein, 93.0 0.42 9.1E-06 46.8 7.9 79 139-230 174-261 (684)
136 PF15023 DUF4523: Protein of u 91.6 1 2.2E-05 37.0 7.4 73 137-225 83-159 (166)
137 KOG4574 RNA-binding protein (c 90.5 0.16 3.6E-06 51.7 2.3 74 142-227 300-373 (1007)
138 KOG0804 Cytoplasmic Zn-finger 90.3 1.1 2.4E-05 42.9 7.4 77 139-220 73-150 (493)
139 PF11767 SET_assoc: Histone ly 90.1 1.1 2.4E-05 31.8 5.6 52 151-214 11-62 (66)
140 KOG4210 Nuclear localization s 90.0 0.23 5.1E-06 45.0 2.7 74 138-214 86-159 (285)
141 KOG4660 Protein Mei2, essentia 89.9 0.53 1.1E-05 45.9 5.0 45 183-228 429-473 (549)
142 PF03880 DbpA: DbpA RNA bindin 89.2 1.3 2.7E-05 31.7 5.5 67 142-225 2-74 (74)
143 KOG2135 Proteins containing th 86.9 0.38 8.1E-06 46.2 1.9 73 140-227 372-445 (526)
144 KOG4676 Splicing factor, argin 78.9 0.62 1.3E-05 43.9 -0.1 65 139-211 150-214 (479)
145 KOG2318 Uncharacterized conser 78.6 9.4 0.0002 37.9 7.8 79 135-214 169-297 (650)
146 KOG4285 Mitotic phosphoprotein 77.6 3.8 8.2E-05 37.5 4.6 60 143-213 200-259 (350)
147 KOG4410 5-formyltetrahydrofola 66.6 5.6 0.00012 36.3 3.0 51 140-198 330-380 (396)
148 COG0724 RNA-binding proteins ( 48.7 30 0.00065 28.5 4.4 38 137-174 222-259 (306)
149 KOG4019 Calcineurin-mediated s 48.2 13 0.00027 31.8 1.9 74 140-226 10-88 (193)
150 PF15513 DUF4651: Domain of un 44.2 43 0.00092 23.5 3.8 20 155-174 9-28 (62)
151 PF03468 XS: XS domain; Inter 42.3 42 0.00091 26.3 4.0 50 142-197 10-68 (116)
152 KOG4454 RNA binding protein (R 36.3 9.9 0.00021 33.5 -0.5 72 139-214 79-154 (267)
153 KOG1295 Nonsense-mediated deca 34.8 56 0.0012 30.9 4.1 74 139-214 6-81 (376)
154 PF11411 DNA_ligase_IV: DNA li 33.2 26 0.00057 21.9 1.2 16 150-165 19-34 (36)
155 PF14893 PNMA: PNMA 32.7 33 0.00071 31.9 2.3 25 138-162 16-40 (331)
156 KOG2891 Surface glycoprotein [ 31.6 42 0.00091 30.7 2.7 91 137-227 146-267 (445)
157 KOG4483 Uncharacterized conser 31.2 99 0.0022 29.7 5.1 54 140-202 391-444 (528)
158 PF10567 Nab6_mRNP_bdg: RNA-re 30.7 78 0.0017 29.0 4.3 84 139-227 14-107 (309)
159 KOG2193 IGF-II mRNA-binding pr 30.2 2.3 5E-05 40.6 -5.7 78 138-226 78-155 (584)
160 PF13046 DUF3906: Protein of u 25.1 1.1E+02 0.0023 21.7 3.2 34 152-190 30-63 (64)
161 PF08544 GHMP_kinases_C: GHMP 23.7 1.9E+02 0.0042 20.0 4.6 44 155-206 37-80 (85)
162 KOG2295 C2H2 Zn-finger protein 22.5 21 0.00047 35.3 -0.8 74 138-214 229-302 (648)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=5.6e-18 Score=138.19 Aligned_cols=83 Identities=23% Similarity=0.359 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
..+++|||+|||++++|++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++.|++..|.++.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~--- 105 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD---RETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH--- 105 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEec---CCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE---
Confidence 45679999999999999999999999999999999874 223589999999999999999999999999999998
Q ss_pred CceEEEeecCC
Q 026189 218 PTLKIQFAHFP 228 (242)
Q Consensus 218 ~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 106 --l~V~~a~~~ 114 (144)
T PLN03134 106 --IRVNPANDR 114 (144)
T ss_pred --EEEEeCCcC
Confidence 999999753
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=3.1e-16 Score=144.64 Aligned_cols=84 Identities=26% Similarity=0.415 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++||++|+++|++||+|++|+|+.+ +..++++|||||+|.++++|++|+++|++.++.+++
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d---~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~-- 178 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRD---YKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR-- 178 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec---CCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce--
Confidence 456789999999999999999999999999999999874 223589999999999999999999999999999988
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|.|++..
T Consensus 179 ---i~V~~a~p~ 187 (346)
T TIGR01659 179 ---LKVSYARPG 187 (346)
T ss_pred ---eeeeccccc
Confidence 999999753
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=6.7e-16 Score=140.89 Aligned_cols=82 Identities=24% Similarity=0.423 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
..+.+|||+|||+++++++|+++|++||.|++|+|+.+. ..++++|||||+|.+.++|.+|++.|||+.|.++.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~---~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~--- 340 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDL---TTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRV--- 340 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcC---CCCCccceEEEEECCHHHHHHHHHHhCCCEECCeE---
Confidence 445689999999999999999999999999999999842 22589999999999999999999999999999998
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|+|..+
T Consensus 341 --i~V~~~~~ 348 (352)
T TIGR01661 341 --LQVSFKTN 348 (352)
T ss_pred --EEEEEccC
Confidence 99999865
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.67 E-value=3.1e-16 Score=143.05 Aligned_cols=82 Identities=22% Similarity=0.438 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
+.++|||+|||.+++|+||+++|++||+|++|+|+.++ ..++++|||||+|.+.++|++|++.|+|..+.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~---~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~---- 74 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDK---VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT---- 74 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcC---CCCccceEEEEEECcHHHHHHHHhhcccEEECCee----
Confidence 46799999999999999999999999999999999852 22689999999999999999999999999999998
Q ss_pred ceEEEeecCC
Q 026189 219 TLKIQFAHFP 228 (242)
Q Consensus 219 ~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 75 -i~v~~a~~~ 83 (352)
T TIGR01661 75 -IKVSYARPS 83 (352)
T ss_pred -EEEEeeccc
Confidence 999999753
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=5.9e-16 Score=108.53 Aligned_cols=68 Identities=31% Similarity=0.587 Sum_probs=63.5
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 143 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 143 LfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
|||+|||.++|+++|+++|++||.|..+.+..+ ..++.++||||+|.+.++|++|++.|+|+.+.+++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~----~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ 68 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN----SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRK 68 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE----TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc----ccccccceEEEEEcCHHHHHHHHHHcCCCEECccC
Confidence 799999999999999999999999999999875 22588999999999999999999999999999986
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=7.7e-15 Score=135.45 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..++|||+|||+++||++|+++|++||+|++|+|+.++ ..++++|||||+|++.++|++|++.|++..+.+.. .
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~---~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~---~ 265 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK---LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGS---Q 265 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC---CCCccceEEEEEECCHHHHHHHHHHhCCCccCCCc---e
Confidence 45689999999999999999999999999999998742 23689999999999999999999999999997753 3
Q ss_pred ceEEEeecC
Q 026189 219 TLKIQFAHF 227 (242)
Q Consensus 219 ~LrV~~ar~ 227 (242)
+|+|.|++.
T Consensus 266 ~l~V~~a~~ 274 (346)
T TIGR01659 266 PLTVRLAEE 274 (346)
T ss_pred eEEEEECCc
Confidence 599999985
No 7
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=7.7e-15 Score=116.25 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
...++|||||||++.++|++|.++|+++|+|+.|.+-.+.-. ..+.|||||+|.+.++|+.|++-++|..++++.
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k---ktpCGFCFVeyy~~~dA~~AlryisgtrLddr~-- 107 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK---KTPCGFCFVEYYSRDDAEDALRYISGTRLDDRP-- 107 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC---cCccceEEEEEecchhHHHHHHHhccCcccccc--
Confidence 347899999999999999999999999999998877554222 368899999999999999999999999999998
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|.|.-.
T Consensus 108 ---ir~D~D~G 115 (153)
T KOG0121|consen 108 ---IRIDWDAG 115 (153)
T ss_pred ---eeeecccc
Confidence 99999753
No 8
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=120.60 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
-.++||||||+..+++.||+.+|..||.|..|-|.. .+.|||||+|+++.+|+.|+..|+|..|.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--------nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r---- 76 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--------NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSR---- 76 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--------cCCCceEEeccCcccHHHHHhhcCCccccCce----
Confidence 367999999999999999999999999999887765 33459999999999999999999999999998
Q ss_pred ceEEEeecCCCC
Q 026189 219 TLKIQFAHFPFH 230 (242)
Q Consensus 219 ~LrV~~ar~~~~ 230 (242)
|+|++.....+
T Consensus 77 -~rVE~S~G~~r 87 (195)
T KOG0107|consen 77 -IRVELSTGRPR 87 (195)
T ss_pred -EEEEeecCCcc
Confidence 99999987554
No 9
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=8.7e-15 Score=131.29 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.+..++|||+|||+...|-||+.+|.+||.|++|.||..|. -+|||+||+|++.++|++|-++|||..|.||+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-----GSKGFGFVTmen~~dadRARa~LHgt~VEGRk-- 165 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-----GSKGFGFVTMENPADADRARAELHGTVVEGRK-- 165 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-----CCCccceEEecChhhHHHHHHHhhcceeeceE--
Confidence 45678999999999999999999999999999999999554 36789999999999999999999999999999
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
|.|..|-
T Consensus 166 ---IEVn~AT 172 (376)
T KOG0125|consen 166 ---IEVNNAT 172 (376)
T ss_pred ---EEEeccc
Confidence 9988874
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.2e-14 Score=126.00 Aligned_cols=82 Identities=22% Similarity=0.430 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
+..++|=|.||+.+++|++|+++|.+||.|..|.|+.+ +.+|.+||||||+|.++++|++||+.|+|+-++.-.
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylard---K~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LI--- 260 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARD---KETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLI--- 260 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEc---cccCcccceEEEEEecHHHHHHHHHHccCcccceEE---
Confidence 46789999999999999999999999999999999984 444799999999999999999999999999998876
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 261 --LrvEwskP 268 (270)
T KOG0122|consen 261 --LRVEWSKP 268 (270)
T ss_pred --EEEEecCC
Confidence 99999984
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.54 E-value=3e-14 Score=139.23 Aligned_cols=82 Identities=15% Similarity=0.321 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..++|||+||+.++++++|+++|++||.|++|+|+.+ +.+++++|||||+|.+.++|++|++.||++.|.|+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D---~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~---- 275 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA---PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY---- 275 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec---CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeE----
Confidence 4579999999999999999999999999999999974 334689999999999999999999999999999998
Q ss_pred ceEEEeecCC
Q 026189 219 TLKIQFAHFP 228 (242)
Q Consensus 219 ~LrV~~ar~~ 228 (242)
|+|.++..+
T Consensus 276 -LrV~kAi~p 284 (612)
T TIGR01645 276 -LRVGKCVTP 284 (612)
T ss_pred -EEEEecCCC
Confidence 999999853
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=4.3e-14 Score=124.74 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=69.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCc
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 219 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~ 219 (242)
.++|||+|||+.+||++|+++|+.||+|++|+|+.+. ..+|||||+|.++++|+.|+ .|+|..|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~------~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~----- 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN------ERSQIAYVTFKDPQGAETAL-LLSGATIVDQS----- 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC------CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCce-----
Confidence 5799999999999999999999999999999998742 24579999999999999999 59999999998
Q ss_pred eEEEeecCC
Q 026189 220 LKIQFAHFP 228 (242)
Q Consensus 220 LrV~~ar~~ 228 (242)
|+|+++...
T Consensus 72 V~Vt~a~~~ 80 (260)
T PLN03120 72 VTITPAEDY 80 (260)
T ss_pred EEEEeccCC
Confidence 999999853
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=7.3e-14 Score=124.03 Aligned_cols=96 Identities=17% Similarity=0.311 Sum_probs=84.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
..++-+||||+-|+.+++|..|+..|.+||+|+.|+||.+ +-+|+++|||||+|+++.+..+|.+..+|.+|+++.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d---~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr- 172 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRD---KVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR- 172 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeee---cccCCccceEEEEeccHHHHHHHHHhccCceecCcE-
Confidence 4678899999999999999999999999999999999995 233799999999999999999999999999999998
Q ss_pred CCCceEEEeecC-------CCCCCCCCCCCC
Q 026189 216 DSPTLKIQFAHF-------PFHLPSDGDEKC 239 (242)
Q Consensus 216 ~~~~LrV~~ar~-------~~~~~~~~~g~~ 239 (242)
|-|.+-+. |.+..+..+|+.
T Consensus 173 ----i~VDvERgRTvkgW~PRRLGGGLGg~r 199 (335)
T KOG0113|consen 173 ----ILVDVERGRTVKGWLPRRLGGGLGGRR 199 (335)
T ss_pred ----EEEEecccccccccccccccCCcCCcc
Confidence 88888774 556666666553
No 14
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.5e-14 Score=123.39 Aligned_cols=81 Identities=23% Similarity=0.317 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
-.-++||||||+|++..++|++.|++||+|++..+|.+ +..+++|||+||+|.+.++|++|++.- .-+|+||+
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd---~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~--- 82 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITD---KNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRK--- 82 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEec---cCCccccceeeEEeecHHHHHHHhcCC-CCcccccc---
Confidence 34569999999999999999999999999999999984 444799999999999999999998543 46788887
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
..++.|..
T Consensus 83 --aNcnlA~l 90 (247)
T KOG0149|consen 83 --ANCNLASL 90 (247)
T ss_pred --cccchhhh
Confidence 66666654
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.50 E-value=6.5e-14 Score=136.87 Aligned_cols=82 Identities=16% Similarity=0.334 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||++++|++|+++|.+||+|++|+++.+ +..++++|||||+|.+.++|++|++.|||..|.|++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D---~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~--- 178 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD---PATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN--- 178 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeec---CCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecce---
Confidence 35679999999999999999999999999999999884 223699999999999999999999999999999998
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|.+...
T Consensus 179 --IkV~rp~~ 186 (612)
T TIGR01645 179 --IKVGRPSN 186 (612)
T ss_pred --eeeccccc
Confidence 99987653
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.6e-13 Score=97.10 Aligned_cols=68 Identities=25% Similarity=0.557 Sum_probs=61.0
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 143 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 143 LfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
|||+|||+.+++++|+++|+.||.|..+++... +. +..+++|||+|.+.++|++|++.+++..+.++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~---~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKN---KD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEES---TT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEee---ec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 799999999999999999999999999999874 33 488999999999999999999999999999976
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.49 E-value=1.9e-13 Score=130.75 Aligned_cols=82 Identities=22% Similarity=0.394 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
+..++|||+|||..+++++|+++|++||.|+.+.|+.+ ...|+++|||||+|.+.++|+.|++.|+|..|.+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~--- 366 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKD---IATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNK--- 366 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec---CCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeE---
Confidence 34579999999999999999999999999999999874 223689999999999999999999999999999998
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|+++..
T Consensus 367 --l~v~~a~~ 374 (509)
T TIGR01642 367 --LHVQRACV 374 (509)
T ss_pred --EEEEECcc
Confidence 99999975
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=1.2e-13 Score=130.50 Aligned_cols=81 Identities=21% Similarity=0.476 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..++|||+|||..+|+++|+++|++||.|+.|+|+.+ ..+++++|||||+|.+.++|++|++.|+|+.|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d---~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~---- 257 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRD---PETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRP---- 257 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEc---CCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEE----
Confidence 3689999999999999999999999999999999874 333589999999999999999999999999999988
Q ss_pred ceEEEeecC
Q 026189 219 TLKIQFAHF 227 (242)
Q Consensus 219 ~LrV~~ar~ 227 (242)
|+|.|+..
T Consensus 258 -i~v~~a~~ 265 (457)
T TIGR01622 258 -IKVGYAQD 265 (457)
T ss_pred -EEEEEccC
Confidence 99999763
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=2e-13 Score=133.08 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||++++|++|+++|++||.|.+|+|+.+. + ++++|||||+|.+.++|++|++.||++.+...+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~---s-G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr-- 128 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF---S-GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGR-- 128 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC---C-CCccceEEEEeCCHHHHHHHHHHcCCCeecCCc--
Confidence 3456899999999999999999999999999999999853 2 589999999999999999999999999996433
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
.|.|.++.
T Consensus 129 --~l~V~~S~ 136 (578)
T TIGR01648 129 --LLGVCISV 136 (578)
T ss_pred --cccccccc
Confidence 26666653
No 20
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=8.4e-14 Score=116.65 Aligned_cols=80 Identities=31% Similarity=0.573 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||||||.+|.|.||+++|.+||.|.+|.|.. +. ....||||+|++..+|+.|+..-+||.+++++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~----r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~r--- 74 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN----RP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCR--- 74 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc----CC--CCCCeeEEEecCccchhhhhhcccccccCcce---
Confidence 4568999999999999999999999999999998842 22 23459999999999999999999999999999
Q ss_pred CceEEEeecCC
Q 026189 218 PTLKIQFAHFP 228 (242)
Q Consensus 218 ~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 75 --LRVEfprgg 83 (241)
T KOG0105|consen 75 --LRVEFPRGG 83 (241)
T ss_pred --EEEEeccCC
Confidence 999999865
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.47 E-value=1.8e-13 Score=132.98 Aligned_cols=77 Identities=25% Similarity=0.474 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceE
Q 026189 142 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 221 (242)
Q Consensus 142 tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~Lr 221 (242)
+|||+|||.++||++|+++|++||.|++|+|+++. ..++++|||||+|.+.++|++|++.|++..|.++. |+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~---~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~-----i~ 73 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDS---VTRRSLGYGYVNFQNPADAERALETMNFKRLGGKP-----IR 73 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCee-----EE
Confidence 79999999999999999999999999999998853 22588999999999999999999999999999988 99
Q ss_pred EEeec
Q 026189 222 IQFAH 226 (242)
Q Consensus 222 V~~ar 226 (242)
|.|+.
T Consensus 74 i~~s~ 78 (562)
T TIGR01628 74 IMWSQ 78 (562)
T ss_pred eeccc
Confidence 99985
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.47 E-value=2.5e-13 Score=132.04 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+||+.++++++|+++|++||.|++|+++.+.. ++++|||||+|.+.++|++|+++|||..+.+++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~----g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~--- 355 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK----GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKP--- 355 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC----CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCce---
Confidence 4567899999999999999999999999999999998532 589999999999999999999999999999988
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|.||..
T Consensus 356 --l~V~~a~~ 363 (562)
T TIGR01628 356 --LYVALAQR 363 (562)
T ss_pred --eEEEeccC
Confidence 99999974
No 23
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4.3e-13 Score=92.51 Aligned_cols=71 Identities=30% Similarity=0.570 Sum_probs=64.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceE
Q 026189 142 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 221 (242)
Q Consensus 142 tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~Lr 221 (242)
+|||+|||..+++++|+++|++||++.++++.... +.++++|||+|.+.++|++|++.+++..+.+++ |+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~-----i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRP-----LR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEE-----Ee
Confidence 58999999999999999999999999999987632 367889999999999999999999999998876 76
Q ss_pred E
Q 026189 222 I 222 (242)
Q Consensus 222 V 222 (242)
|
T Consensus 71 v 71 (72)
T smart00362 71 V 71 (72)
T ss_pred e
Confidence 5
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.2e-13 Score=118.72 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.+.++++||||++.-+||++|++.|++||.|.+||+.+ .+||+||.|++.|+|..||..+|+.+|.+.-
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk---------~qGYaFVrF~tkEaAahAIv~mNntei~G~~-- 229 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK---------DQGYAFVRFETKEAAAHAIVQMNNTEIGGQL-- 229 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec---------ccceEEEEecchhhHHHHHHHhcCceeCceE--
Confidence 56789999999999999999999999999999999964 4579999999999999999999999999987
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
+|..|.|..
T Consensus 230 ---VkCsWGKe~ 238 (321)
T KOG0148|consen 230 ---VRCSWGKEG 238 (321)
T ss_pred ---EEEeccccC
Confidence 999999963
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=6.9e-14 Score=129.29 Aligned_cols=100 Identities=25% Similarity=0.351 Sum_probs=80.8
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHH
Q 026189 124 PSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMD 203 (242)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~ 203 (242)
|+.+...+.........++||||-|+..+||.||+++|++||.|++|.|+++.. +.+|||+||+|.+.+.|..||+
T Consensus 108 pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~----~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 108 PVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD----GLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred ceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc----ccccceeEEEEehHHHHHHHHH
Confidence 334444443332234467999999999999999999999999999999998655 5899999999999999999999
Q ss_pred HHCCceeCCCCCCCCceEEEeecCCC
Q 026189 204 ALHGYKFDDKKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 204 ~L~G~~i~g~~~~~~~LrV~~ar~~~ 229 (242)
+|||..-.... +.+|-|.||...+
T Consensus 184 a~ng~~tmeGc--s~PLVVkFADtqk 207 (510)
T KOG0144|consen 184 ALNGTQTMEGC--SQPLVVKFADTQK 207 (510)
T ss_pred hhccceeeccC--CCceEEEecccCC
Confidence 99998554433 4789999997544
No 26
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.44 E-value=2.6e-13 Score=115.37 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=76.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 135 LKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 135 ~~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
+..+.-.+|-|.||.+-++.++|+.+|++||.|.+|.|..+ ..+ ..++|||||.|.+..+||.|+++|+|.+++++.
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrd--r~T-r~sRgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRD--RYT-RQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccc--ccc-ccccceeEEEeeecchHHHHHHhhcceeeccce
Confidence 33455568999999999999999999999999999999874 223 589999999999999999999999999999998
Q ss_pred CCCCceEEEeecCC
Q 026189 215 PDSPTLKIQFAHFP 228 (242)
Q Consensus 215 ~~~~~LrV~~ar~~ 228 (242)
|+||+|+..
T Consensus 85 -----lrVq~aryg 93 (256)
T KOG4207|consen 85 -----LRVQMARYG 93 (256)
T ss_pred -----eeehhhhcC
Confidence 999999964
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=4.9e-13 Score=125.59 Aligned_cols=78 Identities=15% Similarity=0.354 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCH--HHHHHHHHHHCCceeCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDP--KCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~--~~Ae~A~~~L~G~~i~g~~~ 215 (242)
....+||||||++++++++|+.+|..||.|.+|.|++ .+ | ||||||+|.+. .++++||.+|||.++.|+.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR----ET-G--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~- 79 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR----TK-G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR- 79 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec----cc-C--CceEEEEecCCcHHHHHHHHHHhcCCeecCce-
Confidence 3456999999999999999999999999999999983 22 3 78999999987 7899999999999999999
Q ss_pred CCCceEEEeecC
Q 026189 216 DSPTLKIQFAHF 227 (242)
Q Consensus 216 ~~~~LrV~~ar~ 227 (242)
|+|+-|+.
T Consensus 80 ----LKVNKAKP 87 (759)
T PLN03213 80 ----LRLEKAKE 87 (759)
T ss_pred ----eEEeeccH
Confidence 99999984
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=8.7e-13 Score=115.08 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
.+.+|||+||++.+||++|+++|+.||+|.+|+|+.+ +..++||||+|.++++|+.|+ .|+|..|.++.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D------~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~---- 72 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS------GEYACTAYVTFKDAYALETAV-LLSGATIVDQR---- 72 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC------CCcceEEEEEECCHHHHHHHH-hcCCCeeCCce----
Confidence 4579999999999999999999999999999999874 244579999999999999999 89999999987
Q ss_pred ceEEEeecC
Q 026189 219 TLKIQFAHF 227 (242)
Q Consensus 219 ~LrV~~ar~ 227 (242)
|.|.-...
T Consensus 73 -I~It~~~~ 80 (243)
T PLN03121 73 -VCITRWGQ 80 (243)
T ss_pred -EEEEeCcc
Confidence 88876553
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.42 E-value=9e-13 Score=124.65 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||..+++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|+ .|+|..+.++.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d---~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~-- 159 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKD---RNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRP-- 159 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeec---CCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCee--
Confidence 456789999999999999999999999999999999974 333689999999999999999999 59999999987
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|.|+++..
T Consensus 160 ---i~v~~~~~ 167 (457)
T TIGR01622 160 ---IIVQSSQA 167 (457)
T ss_pred ---eEEeecch
Confidence 99988754
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=1.2e-12 Score=125.52 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~-~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
..++++|||+||++ .+|+++|+++|++||.|.+|+++.+ .+|||||+|.+.++|+.|+..|||..|.|+.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--------~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~- 342 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--------KKETALIEMADPYQAQLALTHLNGVKLFGKP- 342 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCEECCce-
Confidence 35678999999998 6999999999999999999999862 2469999999999999999999999999988
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|++++..
T Consensus 343 ----l~v~~s~~~ 351 (481)
T TIGR01649 343 ----LRVCPSKQQ 351 (481)
T ss_pred ----EEEEEcccc
Confidence 999999753
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=8.1e-13 Score=122.27 Aligned_cols=89 Identities=24% Similarity=0.401 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
+...-+||||-+|..++|.||+++|++||.|.+|.|++| +..+.++|||||+|.++++|.+|+.+|+..+.....
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kD---k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~-- 105 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKD---KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM-- 105 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecc---cccCcccceEEEEeccHHHHHHHHHHhhcccccCCC--
Confidence 344558999999999999999999999999999999985 334699999999999999999999999998776654
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
.++|+|.||...+.
T Consensus 106 ~~pvqvk~Ad~E~e 119 (510)
T KOG0144|consen 106 HHPVQVKYADGERE 119 (510)
T ss_pred Ccceeecccchhhh
Confidence 68899999987554
No 32
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=111.14 Aligned_cols=79 Identities=29% Similarity=0.584 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCc
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 219 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~ 219 (242)
.++|||+|||.++++++|+++|.+||.|..+++..+. ..++++|||||+|.+.++|..|++.+++..|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~---~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~----- 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR---ETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP----- 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc---ccCccCceEEEEecCHHHHHHHHHHcCCCeECCce-----
Confidence 6899999999999999999999999999999998753 22699999999999999999999999999999998
Q ss_pred eEEEeec
Q 026189 220 LKIQFAH 226 (242)
Q Consensus 220 LrV~~ar 226 (242)
|+|+++.
T Consensus 187 ~~v~~~~ 193 (306)
T COG0724 187 LRVQKAQ 193 (306)
T ss_pred eEeeccc
Confidence 9999975
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.40 E-value=1.3e-12 Score=127.29 Aligned_cols=74 Identities=26% Similarity=0.429 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPF--VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~f--G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..++|||+||+++++|++|+++|++| |+|++|++++ +||||+|++.++|++|+++|||.+|.++.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~-- 298 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----------DYAFVHFEDREDAVKAMDELNGKELEGSE-- 298 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----------CeEEEEeCCHHHHHHHHHHhCCCEECCEE--
Confidence 45789999999999999999999999 9999987753 39999999999999999999999999998
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|+|++.+
T Consensus 299 ---I~V~~Akp~ 307 (578)
T TIGR01648 299 ---IEVTLAKPV 307 (578)
T ss_pred ---EEEEEccCC
Confidence 999999864
No 34
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.7e-12 Score=89.08 Aligned_cols=71 Identities=31% Similarity=0.583 Sum_probs=62.8
Q ss_pred EcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceEEE
Q 026189 145 VDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQ 223 (242)
Q Consensus 145 VgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV~ 223 (242)
|+|||..+++++|+++|++||.|.++.+.... ..++++++|||+|.+.++|+.|++.+++..+.+++ |+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~---~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~-----~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK---DTGKSKGFAFVEFESEEDAEKALEALNGKELDGRP-----LKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC---CCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcE-----EEeC
Confidence 57999999999999999999999999998632 23588899999999999999999999999998876 7763
No 35
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2e-13 Score=117.10 Aligned_cols=85 Identities=20% Similarity=0.384 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++||||+|..+++|.-|...|.+||+|++|.+..+ ..+ +|++||+||+|+..++|..||..||+.++.|+.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlD--yes-qkHRgFgFVefe~aEDAaaAiDNMnesEL~Grt--- 81 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLD--YES-QKHRGFGFVEFEEAEDAAAAIDNMNESELFGRT--- 81 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccc--hhc-ccccceeEEEeeccchhHHHhhcCchhhhccee---
Confidence 45689999999999999999999999999999998774 344 599999999999999999999999999999998
Q ss_pred CceEEEeecCCCC
Q 026189 218 PTLKIQFAHFPFH 230 (242)
Q Consensus 218 ~~LrV~~ar~~~~ 230 (242)
|+|++|+.++-
T Consensus 82 --irVN~AkP~ki 92 (298)
T KOG0111|consen 82 --IRVNLAKPEKI 92 (298)
T ss_pred --EEEeecCCccc
Confidence 99999997543
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.39 E-value=1.4e-12 Score=125.03 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHH--CCceeCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL--HGYKFDDKKPD 216 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L--~G~~i~g~~~~ 216 (242)
++++|||+|||++++|++|+++|++||.|.+|+++. +++||||+|++.++|++|++.| ++..+.++.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~-- 69 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---------GKRQALVEFEDEESAKACVNFATSVPIYIRGQP-- 69 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeE--
Confidence 468999999999999999999999999999999974 2459999999999999999875 788999988
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|+|+..
T Consensus 70 ---l~v~~s~~ 77 (481)
T TIGR01649 70 ---AFFNYSTS 77 (481)
T ss_pred ---EEEEecCC
Confidence 99999964
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2.2e-12 Score=113.14 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
++..+.|.|.-||..+|+|||+.+|...|+|++|+|++++ -.|.+-||+||.|-++++|++|+..|||..+..+.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK---itGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT-- 112 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT-- 112 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeecc---ccccccccceeeecChHHHHHHHhhhcceeeccce--
Confidence 4555689999999999999999999999999999999954 34799999999999999999999999999999988
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|||.|||..
T Consensus 113 ---IKVSyARPS 121 (360)
T KOG0145|consen 113 ---IKVSYARPS 121 (360)
T ss_pred ---EEEEeccCC
Confidence 999999854
No 38
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=7.2e-14 Score=116.66 Aligned_cols=82 Identities=18% Similarity=0.428 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
.+.-|||||||+++||.||.-+|++||+|++|.|+++ +.+|+++||||+.|++.-+..-|+..|||..|.+|.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRD---k~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRt---- 106 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRD---KKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRT---- 106 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEec---CCCCcccceEEEEecCccceEEEEeccCCceeccee----
Confidence 5678999999999999999999999999999999995 334799999999999999999999999999999998
Q ss_pred ceEEEeecCC
Q 026189 219 TLKIQFAHFP 228 (242)
Q Consensus 219 ~LrV~~ar~~ 228 (242)
|+|......
T Consensus 107 -irVDHv~~Y 115 (219)
T KOG0126|consen 107 -IRVDHVSNY 115 (219)
T ss_pred -EEeeecccc
Confidence 999987653
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=4.6e-12 Score=87.73 Aligned_cols=74 Identities=31% Similarity=0.632 Sum_probs=66.1
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceE
Q 026189 142 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 221 (242)
Q Consensus 142 tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~Lr 221 (242)
+|+|+|||..+++++|+++|+.||+|..+.+..... .+.+++|||+|.+.+.|..|++.+++..+.+++ |+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~----~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~-----~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD----TKSKGFAFVEFEDEEDAEKALEALNGKELGGRP-----LR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCeECCeE-----EE
Confidence 489999999999999999999999999999986322 256789999999999999999999999999887 88
Q ss_pred EEe
Q 026189 222 IQF 224 (242)
Q Consensus 222 V~~ 224 (242)
|+|
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 765
No 40
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=2.7e-12 Score=119.25 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....+-||||.||.++.|+||..+|.+.|+|-++||+.+ .-+ |.+||||||+|.+.+.|+.|++.||+++|...+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD--~~s-G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK-- 154 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMD--PFS-GDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK-- 154 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeec--ccC-CCCcceEEEEeecHHHHHHHHHHhhCccccCCC--
Confidence 467899999999999999999999999999999999985 223 699999999999999999999999999997655
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
.|+|+.+-
T Consensus 155 --~igvc~Sv 162 (506)
T KOG0117|consen 155 --LLGVCVSV 162 (506)
T ss_pred --EeEEEEee
Confidence 48777664
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.5e-12 Score=112.22 Aligned_cols=88 Identities=20% Similarity=0.373 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCc
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 219 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~ 219 (242)
.--+||+-|..+|+.+.|++.|.+||+|.+++|+++ .. ++|+|||+||.|.+.++||.||..|+|.=|..|.
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD--~~-T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~----- 133 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRD--MN-TGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT----- 133 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeec--cc-CCcccceeEEeccchHHHHHHHHHhCCeeeccce-----
Confidence 447999999999999999999999999999999995 33 3699999999999999999999999999999988
Q ss_pred eEEEeecCCCCCCCCCCCC
Q 026189 220 LKIQFAHFPFHLPSDGDEK 238 (242)
Q Consensus 220 LrV~~ar~~~~~~~~~~g~ 238 (242)
||-.||- |+|..++++
T Consensus 134 IRTNWAT---RKp~e~n~~ 149 (321)
T KOG0148|consen 134 IRTNWAT---RKPSEMNGK 149 (321)
T ss_pred eeccccc---cCccccCCC
Confidence 9999993 334444443
No 42
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=94.97 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=70.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
++..++.|||.|||+++|.+|+.++|.+||.|..|+|-.. ...+|.|||.|++..+|.+|++.|+|+-+.++-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~------k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ry- 86 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT------KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRY- 86 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc------cCcCceEEEEehHhhhHHHHHHHhcccccCCce-
Confidence 4566789999999999999999999999999999999542 145679999999999999999999999999987
Q ss_pred CCCceEEEeec
Q 026189 216 DSPTLKIQFAH 226 (242)
Q Consensus 216 ~~~~LrV~~ar 226 (242)
|.|-|-.
T Consensus 87 ----l~vlyyq 93 (124)
T KOG0114|consen 87 ----LVVLYYQ 93 (124)
T ss_pred ----EEEEecC
Confidence 8877653
No 43
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.32 E-value=3.1e-12 Score=120.76 Aligned_cols=80 Identities=23% Similarity=0.436 Sum_probs=75.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
+.+||||+|++++|++|.++|+..|.|.+++++.+ +.+|+.+||+|++|.+.+.|++|++.|+|+++.+++ |
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D---~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~-----l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYD---RETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRK-----L 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeeccc---ccCCCcCceeeEecCchhhHHHHHHhcCCcccCCce-----E
Confidence 89999999999999999999999999999999984 445799999999999999999999999999999999 9
Q ss_pred EEEeecCC
Q 026189 221 KIQFAHFP 228 (242)
Q Consensus 221 rV~~ar~~ 228 (242)
+|.|+...
T Consensus 91 ~v~~~~~~ 98 (435)
T KOG0108|consen 91 RVNYASNR 98 (435)
T ss_pred Eeeccccc
Confidence 99999753
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=2.4e-12 Score=114.19 Aligned_cols=80 Identities=23% Similarity=0.428 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
.+|||||||.++++.+|+.+|++||+|++|.||+. |+||..++...|+.||..|+||+|.|.. |
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg~n-----I 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHGVN-----I 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecceE-----E
Confidence 47999999999999999999999999999999851 9999999999999999999999999998 9
Q ss_pred EEEeecCCCCCCCCCC
Q 026189 221 KIQFAHFPFHLPSDGD 236 (242)
Q Consensus 221 rV~~ar~~~~~~~~~~ 236 (242)
+|+-+++......+..
T Consensus 67 nVeaSksKsk~stkl~ 82 (346)
T KOG0109|consen 67 NVEASKSKSKASTKLH 82 (346)
T ss_pred EEEeccccCCCccccc
Confidence 9999988654444444
No 45
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=5.7e-12 Score=100.89 Aligned_cols=83 Identities=23% Similarity=0.404 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
-.+-.|||.++..+.||++|.+.|..||+|+.+.|..+ +++ |-.|||+.|+|++.+.|++|++++||..+.+.+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLD--RRt-Gy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~--- 143 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLD--RRT-GYVKGYALVEYETLKEAQAAIDALNGAELLGQN--- 143 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccc--ccc-ccccceeeeehHhHHHHHHHHHhccchhhhCCc---
Confidence 45669999999999999999999999999999998773 344 699999999999999999999999999999998
Q ss_pred CceEEEeecCC
Q 026189 218 PTLKIQFAHFP 228 (242)
Q Consensus 218 ~~LrV~~ar~~ 228 (242)
|.|.|+...
T Consensus 144 --v~VDw~Fv~ 152 (170)
T KOG0130|consen 144 --VSVDWCFVK 152 (170)
T ss_pred --eeEEEEEec
Confidence 999999753
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.2e-11 Score=114.97 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..+.|||.||+.++||+.|+++|++||.|+.|+.+++ ||||+|.++++|-+||+.+||++|+|..
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeldG~~---- 322 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELDGSP---- 322 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceecCce----
Confidence 4568999999999999999999999999998877642 9999999999999999999999999988
Q ss_pred ceEEEeecCCCC
Q 026189 219 TLKIQFAHFPFH 230 (242)
Q Consensus 219 ~LrV~~ar~~~~ 230 (242)
|.|.+||.+-.
T Consensus 323 -iEvtLAKP~~k 333 (506)
T KOG0117|consen 323 -IEVTLAKPVDK 333 (506)
T ss_pred -EEEEecCChhh
Confidence 99999997544
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.24 E-value=4.1e-11 Score=81.66 Aligned_cols=56 Identities=30% Similarity=0.592 Sum_probs=49.7
Q ss_pred HHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceEEEee
Q 026189 157 VSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 225 (242)
Q Consensus 157 L~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV~~a 225 (242)
|.++|++||+|+++.+..++ +++|||+|.+.++|++|++.|||..+.+++ |+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~-----l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------RGFAFVEFASVEDAQKAIEQLNGRQFNGRP-----LKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------TTEEEEEESSHHHHHHHHHHHTTSEETTEE-----EEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCcE-----EEEEEC
Confidence 67899999999999997521 359999999999999999999999999988 999996
No 48
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=3.2e-11 Score=109.18 Aligned_cols=106 Identities=20% Similarity=0.309 Sum_probs=82.5
Q ss_pred cCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccc
Q 026189 106 RDIAPGINPTIPDVINGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAM 185 (242)
Q Consensus 106 ~~~~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~k 185 (242)
++...|++..+...+-.+.+..+- .-|+.+....+|||++|-..++|.+|+++|.+||+|+.++++.. +
T Consensus 196 ~dryyg~ndPva~kil~ra~~~~~--lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---------~ 264 (377)
T KOG0153|consen 196 KDRYYGLNDPVALKILNRAGSAGT--LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---------K 264 (377)
T ss_pred ccccccccChHHHHHHhhcccccc--cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---------c
Confidence 444556666665433334444443 44566777889999999999999999999999999999999752 3
Q ss_pred cEEEEEeCCHHHHHHHHHHH-CCceeCCCCCCCCceEEEeecC
Q 026189 186 VLCFVEFDDPKCARTAMDAL-HGYKFDDKKPDSPTLKIQFAHF 227 (242)
Q Consensus 186 GfaFV~F~~~~~Ae~A~~~L-~G~~i~g~~~~~~~LrV~~ar~ 227 (242)
+||||+|.++++||.|.++. +-..|+|.+ |+|.|++.
T Consensus 265 ~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R-----l~i~Wg~~ 302 (377)
T KOG0153|consen 265 GCAFVTFTTREAAEKAAEKSFNKLVINGFR-----LKIKWGRP 302 (377)
T ss_pred ccceeeehhhHHHHHHHHhhcceeeecceE-----EEEEeCCC
Confidence 49999999999999998764 555668888 99999987
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.23 E-value=3.9e-11 Score=103.15 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHH----hhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSH----LFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~----~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
++.||||.||+..+..+||+. +|++||+|++|.... + .+.+|-|||.|.+.+.|-.|+++|+|+.+.|+.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k-----t-~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK-----T-PKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC-----C-CCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 444999999999999999887 999999999987753 2 488899999999999999999999999999987
Q ss_pred CCCCceEEEeecCCCC
Q 026189 215 PDSPTLKIQFAHFPFH 230 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~~ 230 (242)
++|+||+...-
T Consensus 82 -----mriqyA~s~sd 92 (221)
T KOG4206|consen 82 -----MRIQYAKSDSD 92 (221)
T ss_pred -----hheecccCccc
Confidence 99999997543
No 50
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.22 E-value=1.2e-11 Score=103.32 Aligned_cols=110 Identities=11% Similarity=0.201 Sum_probs=89.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEEecCCCCCCCccccEEEEEeCCHHHHH
Q 026189 121 NGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREI-RVIHKEPRRTGDRAMVLCFVEFDDPKCAR 199 (242)
Q Consensus 121 ~~r~~~~~~~~~~~~~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~v-rlv~~~~~~~ggk~kGfaFV~F~~~~~Ae 199 (242)
-++++.+..........+.+.+|||+||.++++|..|.++|+.||.+... +++++ ..+|+++||+||.|.+.+.+.
T Consensus 77 YgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd---~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 77 YGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD---PDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred cCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCccccc---ccCCCCCCCeEEechhHHHHH
Confidence 35777777666555566777899999999999999999999999998653 45553 233688999999999999999
Q ss_pred HHHHHHCCceeCCCCCCCCceEEEeecCCCCCCCCCCCCC
Q 026189 200 TAMDALHGYKFDDKKPDSPTLKIQFAHFPFHLPSDGDEKC 239 (242)
Q Consensus 200 ~A~~~L~G~~i~g~~~~~~~LrV~~ar~~~~~~~~~~g~~ 239 (242)
+|++.++|..+..++ ++|++++....+. .++|..
T Consensus 154 ~ai~s~ngq~l~nr~-----itv~ya~k~~~kg-~~~g~~ 187 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRP-----ITVSYAFKKDTKG-ERHGTA 187 (203)
T ss_pred HHHHHhccchhcCCc-----eEEEEEEecCCCc-ccCCCH
Confidence 999999999999988 9999998655433 455543
No 51
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.22 E-value=2.1e-10 Score=98.80 Aligned_cols=88 Identities=34% Similarity=0.555 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....+||||.+||.++..+||..+|+.|-+++.+.|.. +.+.+.-.+.++||+|.+...|+.|+.+|||..|+..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~--Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~-- 106 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKY--TSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET-- 106 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeee--ccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc--
Confidence 45678999999999999999999999999988876643 22222234579999999999999999999999999877
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
...|+|++||+-
T Consensus 107 ~stLhiElAKSN 118 (284)
T KOG1457|consen 107 GSTLHIELAKSN 118 (284)
T ss_pred CceeEeeehhcC
Confidence 568999999973
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=5.8e-11 Score=112.79 Aligned_cols=80 Identities=24% Similarity=0.430 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
+-.+|.|.||||.|.+.+|+.+|++||.|++|.|..+ ..++-+|||||.|....+|+.|++.+|+.+|+||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k----~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~---- 187 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK----KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRP---- 187 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC----CCCCccceEEEEEeeHHHHHHHHHhccCceecCce----
Confidence 3569999999999999999999999999999999753 23578899999999999999999999999999998
Q ss_pred ceEEEeecC
Q 026189 219 TLKIQFAHF 227 (242)
Q Consensus 219 ~LrV~~ar~ 227 (242)
|-|.||-.
T Consensus 188 -VAVDWAV~ 195 (678)
T KOG0127|consen 188 -VAVDWAVD 195 (678)
T ss_pred -eEEeeecc
Confidence 99999953
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.8e-11 Score=105.77 Aligned_cols=84 Identities=29% Similarity=0.510 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
..+.+|+|||-.||.+..+.||..+|-+||.|++.++..+ +-+..+|+|+||.|++..+|+.||.+|||+.|.-++
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvD---RATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR- 356 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVD---RATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR- 356 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeeh---hccccccceeeEecCCchhHHHHHHHhcchhhhhhh-
Confidence 3668899999999999999999999999999999998874 233589999999999999999999999999999998
Q ss_pred CCCceEEEeecC
Q 026189 216 DSPTLKIQFAHF 227 (242)
Q Consensus 216 ~~~~LrV~~ar~ 227 (242)
|||+.-|.
T Consensus 357 ----LKVQLKRP 364 (371)
T KOG0146|consen 357 ----LKVQLKRP 364 (371)
T ss_pred ----hhhhhcCc
Confidence 99998763
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=1.6e-10 Score=109.86 Aligned_cols=83 Identities=24% Similarity=0.387 Sum_probs=72.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHH-----CC-ce
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL-----HG-YK 209 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L-----~G-~~ 209 (242)
......+|||.|||+++||++|.++|++||+|.++.|+. .+.++.++|+|||.|.+..+|..||+.. .| +.
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~---~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~l 364 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVK---DKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVL 364 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEe---ccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEE
Confidence 344568999999999999999999999999999999998 4445799999999999999999999876 34 78
Q ss_pred eCCCCCCCCceEEEeec
Q 026189 210 FDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 210 i~g~~~~~~~LrV~~ar 226 (242)
++||- |+|..|-
T Consensus 365 l~GR~-----Lkv~~Av 376 (678)
T KOG0127|consen 365 LDGRL-----LKVTLAV 376 (678)
T ss_pred EeccE-----Eeeeecc
Confidence 88887 9998874
No 55
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=1.2e-10 Score=111.61 Aligned_cols=75 Identities=24% Similarity=0.433 Sum_probs=61.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCC------------CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHH
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPF------------VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDA 204 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~f------------G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~ 204 (242)
....++|||||||+.+|+++|+++|.+| +.|..+.+ .+.+|||||+|.+.++|+.|| +
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------~~~kg~afVeF~~~e~A~~Al-~ 241 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------NKEKNFAFLEFRTVEEATFAM-A 241 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------CCCCCEEEEEeCCHHHHhhhh-c
Confidence 4566899999999999999999999874 23333333 255679999999999999999 6
Q ss_pred HCCceeCCCCCCCCceEEEeec
Q 026189 205 LHGYKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 205 L~G~~i~g~~~~~~~LrV~~ar 226 (242)
|+|..|.+.. |+|...+
T Consensus 242 l~g~~~~g~~-----l~v~r~~ 258 (509)
T TIGR01642 242 LDSIIYSNVF-----LKIRRPH 258 (509)
T ss_pred CCCeEeeCce-----eEecCcc
Confidence 9999999987 9987654
No 56
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.14 E-value=7.1e-11 Score=98.77 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.+...||||+||+..++++.|.++|-+.|+|+.+++-++. -..+++|||||+|.++++|+=|++.|+..++.|+.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDr---v~~~~qGygF~Ef~~eedadYAikiln~VkLYgrp-- 80 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDR---VTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRP-- 80 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhh---hcccccceeEEEEechhhhHHHHHHHHHHHhcCce--
Confidence 3456899999999999999999999999999999997742 22478999999999999999999999999999998
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
|+|.-+.
T Consensus 81 ---Irv~kas 87 (203)
T KOG0131|consen 81 ---IRVNKAS 87 (203)
T ss_pred ---eEEEecc
Confidence 9988886
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=4.7e-11 Score=108.94 Aligned_cols=78 Identities=17% Similarity=0.375 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCc
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 219 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~ 219 (242)
-|++|||.+.+++.|+.|+..|.+||+|++|.+.++ .-++++|||+||+|+-++.|+-|++.|||.++.||+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWD---p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRN----- 184 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWD---PATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN----- 184 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccc---cccccccceEEEEEeCcHHHHHHHHHhccccccCcc-----
Confidence 379999999999999999999999999999999884 233699999999999999999999999999999999
Q ss_pred eEEEee
Q 026189 220 LKIQFA 225 (242)
Q Consensus 220 LrV~~a 225 (242)
|+|...
T Consensus 185 iKVgrP 190 (544)
T KOG0124|consen 185 IKVGRP 190 (544)
T ss_pred ccccCC
Confidence 998743
No 58
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=1.2e-10 Score=114.21 Aligned_cols=77 Identities=27% Similarity=0.381 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
-++|||||+|+..++|.||..+|+.||+|.+|.++. +++||||+...+.+|++|+.+|..+.+.++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~---- 486 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---------PRGCAFIKMVRRQDAEKALQKLSNVKVADKT---- 486 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc---------CCceeEEEEeehhHHHHHHHHHhccccccee----
Confidence 356999999999999999999999999999999973 5679999999999999999999999999998
Q ss_pred ceEEEeecCCC
Q 026189 219 TLKIQFAHFPF 229 (242)
Q Consensus 219 ~LrV~~ar~~~ 229 (242)
|||.||...+
T Consensus 487 -Iki~Wa~g~G 496 (894)
T KOG0132|consen 487 -IKIAWAVGKG 496 (894)
T ss_pred -eEEeeeccCC
Confidence 9999998754
No 59
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=4.3e-10 Score=98.86 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
+.....|||-||.++.+|.-|.++|.+||.|..|+++++ .+..+.|||+||+..+.++|..||..||||.+.++.
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD---~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rv-- 349 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRD---FTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV-- 349 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEec---CCcccccceeEEEecchHHHHHHHHHhcCccccceE--
Confidence 345669999999999999999999999999999999985 333589999999999999999999999999999987
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|.|.|--+
T Consensus 350 ---LQVsFKtn 357 (360)
T KOG0145|consen 350 ---LQVSFKTN 357 (360)
T ss_pred ---EEEEEecC
Confidence 99998643
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.11 E-value=8e-11 Score=104.64 Aligned_cols=76 Identities=24% Similarity=0.416 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
...+++|+||||.+.++.+||+..|++||.+++|.|+++ |+||.|+-.++|..|++.|++.+|+|++
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~gk~-- 141 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQGKR-- 141 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhcccccccccce--
Confidence 346789999999999999999999999999999999862 9999999999999999999999999998
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
++|+.+-+-
T Consensus 142 ---m~vq~stsr 150 (346)
T KOG0109|consen 142 ---MHVQLSTSR 150 (346)
T ss_pred ---eeeeeeccc
Confidence 999998653
No 61
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=3.4e-10 Score=80.94 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=52.4
Q ss_pred HHHHHHhhc----CCCCeEEEE-EEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceEE
Q 026189 154 RREVSHLFR----PFVGYREIR-VIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKI 222 (242)
Q Consensus 154 e~eL~~~F~----~fG~i~~vr-lv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV 222 (242)
+++|+++|+ +||.|.+|. ++.+... ..++++||+||+|.+.++|++|++.|||..+.++. |++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~-----l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVG-YENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT-----VKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCC-CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE-----EEe
Confidence 678999998 999999995 5443221 11478999999999999999999999999999987 765
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=3.6e-10 Score=99.64 Aligned_cols=84 Identities=29% Similarity=0.417 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..++||||-|...-.|||++.+|..||.|.+|.+.+. .. |.+|||+||+|.+..+|+.||.+|+|......- +.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg---~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA--SS 91 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG---PD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA--SS 91 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC---CC-CCCCCceEEEeccchHHHHHHHHhcccccCCCC--cc
Confidence 5579999999999999999999999999999999863 23 689999999999999999999999999877654 56
Q ss_pred ceEEEeecCC
Q 026189 219 TLKIQFAHFP 228 (242)
Q Consensus 219 ~LrV~~ar~~ 228 (242)
.|-|.|+.-.
T Consensus 92 SLVVK~ADTd 101 (371)
T KOG0146|consen 92 SLVVKFADTD 101 (371)
T ss_pred ceEEEeccch
Confidence 7899999754
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=5.4e-10 Score=104.13 Aligned_cols=92 Identities=22% Similarity=0.417 Sum_probs=74.8
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHH
Q 026189 118 DVINGVPSSLRNNAGSPLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKC 197 (242)
Q Consensus 118 ~~~~~r~~~~~~~~~~~~~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~ 197 (242)
+.++++++.+..... ....|||.||+.+++..+|.++|+.||+|++|+++.++. | ++|| ||+|++++.
T Consensus 60 ~~~~~~~~rim~s~r------d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~----g-~kg~-FV~f~~e~~ 127 (369)
T KOG0123|consen 60 DVLKGKPIRIMWSQR------DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN----G-SKGY-FVQFESEES 127 (369)
T ss_pred cccCCcEEEeehhcc------CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC----C-ceee-EEEeCCHHH
Confidence 345566655443321 112299999999999999999999999999999998543 3 8899 999999999
Q ss_pred HHHHHHHHCCceeCCCCCCCCceEEEeec
Q 026189 198 ARTAMDALHGYKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 198 Ae~A~~~L~G~~i~g~~~~~~~LrV~~ar 226 (242)
|.+|++.+||..+.+++ |-|....
T Consensus 128 a~~ai~~~ng~ll~~kk-----i~vg~~~ 151 (369)
T KOG0123|consen 128 AKKAIEKLNGMLLNGKK-----IYVGLFE 151 (369)
T ss_pred HHHHHHHhcCcccCCCe-----eEEeecc
Confidence 99999999999999988 7776554
No 64
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.1e-10 Score=103.28 Aligned_cols=83 Identities=24% Similarity=0.426 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.++-+.|||-.|.+.+|+++|+-||+.||.|+.|.++++ .++ |.+..||||+|++.+++++|.-.|++..|++++
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD--~kt-gdsLqyaFiEFen~escE~AyFKMdNvLIDDrR-- 310 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRD--RKT-GDSLQYAFIEFENKESCEQAYFKMDNVLIDDRR-- 310 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEec--ccc-cchhheeeeeecchhhHHHHHhhhcceeeccce--
Confidence 456789999999999999999999999999999999995 444 599999999999999999999999999999999
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|.|.|+.+
T Consensus 311 ---IHVDFSQS 318 (479)
T KOG0415|consen 311 ---IHVDFSQS 318 (479)
T ss_pred ---EEeehhhh
Confidence 99999865
No 65
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.05 E-value=2.6e-10 Score=108.32 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=70.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceE
Q 026189 142 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 221 (242)
Q Consensus 142 tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~Lr 221 (242)
+||||||.++++|++|+.+|.+||.|..|.+..+. .+ |.++||+||+|.+.++|.+|++.|||++|-|+. |+
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~--~t-G~skgfGfi~f~~~~~ar~a~e~lngfelAGr~-----ik 351 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS--ET-GRSKGFGFITFVNKEDARKALEQLNGFELAGRL-----IK 351 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeecccc--cc-ccccCcceEEEecHHHHHHHHHHhccceecCce-----EE
Confidence 49999999999999999999999999999998742 12 699999999999999999999999999999998 99
Q ss_pred EEeecC
Q 026189 222 IQFAHF 227 (242)
Q Consensus 222 V~~ar~ 227 (242)
|...-.
T Consensus 352 V~~v~~ 357 (549)
T KOG0147|consen 352 VSVVTE 357 (549)
T ss_pred EEEeee
Confidence 877643
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.03 E-value=6.2e-10 Score=103.62 Aligned_cols=81 Identities=21% Similarity=0.416 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhc-CCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFR-PFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~-~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
...+.+||.|||+++.+.+|+++|+ +.|+|.+|.|..++. ||++|||.|+|++++.+++|++.||-+.+.++.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~----GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~-- 115 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES----GKARGCAVVEFKDPENVQKALEKLNKYEVNGRE-- 115 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC----CCcCCceEEEeeCHHHHHHHHHHhhhccccCce--
Confidence 3445699999999999999999996 689999999998655 699999999999999999999999999999998
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|.-.+.
T Consensus 116 ---l~vKEd~d 123 (608)
T KOG4212|consen 116 ---LVVKEDHD 123 (608)
T ss_pred ---EEEeccCc
Confidence 98877664
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.03 E-value=8.8e-10 Score=93.76 Aligned_cols=83 Identities=19% Similarity=0.364 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCC-CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPF-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~f-G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.....-+||..+|.-+.+.++..+|.+| |.+..+++.+ .+.+|+++|||||+|++.+.|+.|.+.||+|.+.++-
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR---nkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l- 121 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR---NKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL- 121 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeec---ccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe-
Confidence 3445679999999999999999999998 6666677755 4444799999999999999999999999999999988
Q ss_pred CCCceEEEeecC
Q 026189 216 DSPTLKIQFAHF 227 (242)
Q Consensus 216 ~~~~LrV~~ar~ 227 (242)
|.+.|-..
T Consensus 122 ----L~c~vmpp 129 (214)
T KOG4208|consen 122 ----LECHVMPP 129 (214)
T ss_pred ----eeeEEeCc
Confidence 88887653
No 68
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=7.1e-10 Score=101.31 Aligned_cols=104 Identities=13% Similarity=0.252 Sum_probs=81.3
Q ss_pred CCCcccCCCCCCCCCCCCC----CCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEE
Q 026189 115 TIPDVINGVPSSLRNNAGS----PLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFV 190 (242)
Q Consensus 115 ~~~~~~~~r~~~~~~~~~~----~~~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV 190 (242)
+..++..++|..+++.... ......-++|||..+.++++|+||+.+|+.||+|++|.|.+ ..+++.+|||+|+
T Consensus 181 GGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr---~pt~~~HkGyGfi 257 (544)
T KOG0124|consen 181 GGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLAR---APTGRGHKGYGFI 257 (544)
T ss_pred cCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeec---cCCCCCccceeeE
Confidence 3444444555555543211 11233567999999999999999999999999999999988 4556789999999
Q ss_pred EeCCHHHHHHHHHHHCCceeCCCCCCCCceEEEeec
Q 026189 191 EFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 191 ~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV~~ar 226 (242)
+|.+..+...|+..||=+.+.|.- |||--+-
T Consensus 258 Ey~n~qs~~eAiasMNlFDLGGQy-----LRVGk~v 288 (544)
T KOG0124|consen 258 EYNNLQSQSEAIASMNLFDLGGQY-----LRVGKCV 288 (544)
T ss_pred EeccccchHHHhhhcchhhcccce-----Eeccccc
Confidence 999999999999999999998876 7765443
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=5.5e-09 Score=101.93 Aligned_cols=81 Identities=30% Similarity=0.426 Sum_probs=71.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
++|||.||++++|.++|..+|.+.|.|+.+.|..+...+.--.++||+||+|.+.++|+.|++.|||..|+|+. |
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~-----l 590 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHK-----L 590 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCce-----E
Confidence 34999999999999999999999999999988765332211246699999999999999999999999999998 9
Q ss_pred EEEeec
Q 026189 221 KIQFAH 226 (242)
Q Consensus 221 rV~~ar 226 (242)
.|+++.
T Consensus 591 ~lk~S~ 596 (725)
T KOG0110|consen 591 ELKISE 596 (725)
T ss_pred EEEecc
Confidence 999998
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=2.5e-09 Score=104.27 Aligned_cols=81 Identities=27% Similarity=0.472 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..++|+|.|||+..+-.+|+.+|..||.|++|+|..+ ..+ +-++|||||+|-+..+|..|+++|.+.-+.||+
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-~~k--~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr---- 684 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-IGK--GAHRGFGFVDFLTPREAKNAFDALGSTHLYGRR---- 684 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchh-hcc--hhhccceeeeccCcHHHHHHHHhhcccceechh----
Confidence 3679999999999999999999999999999999764 222 467999999999999999999999999999999
Q ss_pred ceEEEeecC
Q 026189 219 TLKIQFAHF 227 (242)
Q Consensus 219 ~LrV~~ar~ 227 (242)
|-++||+.
T Consensus 685 -LVLEwA~~ 692 (725)
T KOG0110|consen 685 -LVLEWAKS 692 (725)
T ss_pred -hheehhcc
Confidence 99999986
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.83 E-value=4e-08 Score=91.70 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=68.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||.|||+++|+..|++-|..||.|+++.|+. + |+++| .|.|.++++||.|+..|+|..++++.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime-----~-GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~-- 602 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME-----N-GKSKG--VVRFFSPEDAERACALMNGSRLDGRN-- 602 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc-----c-CCccc--eEEecCHHHHHHHHHHhccCcccCce--
Confidence 56678999999999999999999999999999988854 1 57776 89999999999999999999999999
Q ss_pred CCceEEEee
Q 026189 217 SPTLKIQFA 225 (242)
Q Consensus 217 ~~~LrV~~a 225 (242)
|+|+|.
T Consensus 603 ---I~V~y~ 608 (608)
T KOG4212|consen 603 ---IKVTYF 608 (608)
T ss_pred ---eeeeeC
Confidence 999874
No 72
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.76 E-value=2.5e-08 Score=94.04 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=67.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
....+|||.|||.++++++|+++|.+||.|++.+|..+. .+++..+|+||+|++.++++.|+++- -..+.+++
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~k--- 358 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRK--- 358 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcC-ccccCCee---
Confidence 344569999999999999999999999999999998754 23455589999999999999999665 56677776
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|.|+--+.
T Consensus 359 --l~Veek~~ 366 (419)
T KOG0116|consen 359 --LNVEEKRP 366 (419)
T ss_pred --EEEEeccc
Confidence 88877664
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=4.1e-08 Score=91.61 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=66.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
..|||| +++||..|.++|+++|+++++++.++. + +-|||||.|.+..+|++||++||...+.|+. |
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~----t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~-----~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA----T--SLGYAYVNFQQPADAERALDTMNFDVLKGKP-----I 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC----C--ccceEEEecCCHHHHHHHHHHcCCcccCCcE-----E
Confidence 468999 899999999999999999999998742 2 7889999999999999999999999999998 9
Q ss_pred EEEeec
Q 026189 221 KIQFAH 226 (242)
Q Consensus 221 rV~~ar 226 (242)
+|-|+.
T Consensus 68 rim~s~ 73 (369)
T KOG0123|consen 68 RIMWSQ 73 (369)
T ss_pred Eeehhc
Confidence 999985
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.68 E-value=1.8e-08 Score=91.78 Aligned_cols=72 Identities=25% Similarity=0.422 Sum_probs=60.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
..++||||+|+|+++++.|++.|.+||+|.+|.++++. ..++++||+||+|++.++...++.. .-..|+++.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~---~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ 76 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDP---STGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRS 76 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccC---CCCCcccccceecCCCcchheeecc-cccccCCcc
Confidence 67899999999999999999999999999999999853 2369999999999999999888743 234555554
No 75
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.67 E-value=1.3e-07 Score=86.09 Aligned_cols=85 Identities=16% Similarity=0.245 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCc
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--------IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 208 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~--------vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~ 208 (242)
+..++.|||.|||.++|-+|+.++|++||-|.. |+|..++. |+-||=|.+.|--.++++-|+..|++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCcc
Confidence 445667999999999999999999999998865 88887543 699999999999999999999999999
Q ss_pred eeCCCCCCCCceEEEeecCCCC
Q 026189 209 KFDDKKPDSPTLKIQFAHFPFH 230 (242)
Q Consensus 209 ~i~g~~~~~~~LrV~~ar~~~~ 230 (242)
.+.+++ |+|+-|++...
T Consensus 207 ~~rg~~-----~rVerAkfq~K 223 (382)
T KOG1548|consen 207 ELRGKK-----LRVERAKFQMK 223 (382)
T ss_pred cccCcE-----EEEehhhhhhc
Confidence 999998 99999997443
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.63 E-value=1.2e-07 Score=83.53 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
+....+|+|.|||..++++||+++|..|+.++.+-|-.+ +. |.+.|.|-|.|...++|++|++.+||..++++.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~---~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~-- 153 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD---RA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRP-- 153 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC---CC-CCCCccceeeecchHhHHHHHHHhcCcccCCce--
Confidence 445579999999999999999999999998877766543 33 689999999999999999999999999999987
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
++++....+
T Consensus 154 ---mk~~~i~~~ 162 (243)
T KOG0533|consen 154 ---MKIEIISSP 162 (243)
T ss_pred ---eeeEEecCc
Confidence 888777543
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.62 E-value=5.2e-08 Score=95.28 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
++..+.|||+||++.++|+.|...|..||+|..|+|+.-.+.....+.+-|+||.|-++.+|++|++.|||..+....
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e-- 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE-- 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee--
Confidence 445668999999999999999999999999999999982111111244459999999999999999999999999998
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
+++-|++.
T Consensus 249 ---~K~gWgk~ 256 (877)
T KOG0151|consen 249 ---MKLGWGKA 256 (877)
T ss_pred ---eeeccccc
Confidence 99999974
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=4.5e-08 Score=84.64 Aligned_cols=72 Identities=24% Similarity=0.439 Sum_probs=66.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
.++|||+||+.+.+.+|+++|..||.+.+|.+.. ||+||+|++..+|+.|+..||+.+|.+.+ +
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----------gf~fv~fed~rda~Dav~~l~~~~l~~e~-----~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----------GFGFVEFEDPRDADDAVHDLDGKELCGER-----L 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-----------ccceeccCchhhhhcccchhcCceeccee-----e
Confidence 3689999999999999999999999999987743 49999999999999999999999999987 9
Q ss_pred EEEeecCC
Q 026189 221 KIQFAHFP 228 (242)
Q Consensus 221 rV~~ar~~ 228 (242)
.|+|++..
T Consensus 66 vve~~r~~ 73 (216)
T KOG0106|consen 66 VVEHARGK 73 (216)
T ss_pred eeeccccc
Confidence 99999853
No 79
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.60 E-value=1.1e-07 Score=91.18 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
-+++|||.+|...+...+|+.||++||+|+-.++|... ..+ -.++|+||++.+.++|.++|+.|+-.++.|+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa-RsP--GaRCYGfVTMSts~eAtkCI~hLHrTELHGrm---- 476 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA-RSP--GARCYGFVTMSTSAEATKCIEHLHRTELHGRM---- 476 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecC-CCC--CcceeEEEEecchHHHHHHHHHhhhhhhccee----
Confidence 34689999999999999999999999999999998742 222 35679999999999999999999999999998
Q ss_pred ceEEEeecCC
Q 026189 219 TLKIQFAHFP 228 (242)
Q Consensus 219 ~LrV~~ar~~ 228 (242)
|.|+-+++.
T Consensus 477 -ISVEkaKNE 485 (940)
T KOG4661|consen 477 -ISVEKAKNE 485 (940)
T ss_pred -eeeeecccC
Confidence 999999974
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=4.2e-08 Score=93.70 Aligned_cols=70 Identities=27% Similarity=0.365 Sum_probs=62.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
.-+..+|+|-|||..+++++|+.+|+.||+|++|+... ..+|-+||+|.|.-+|++|+++|++..+.+++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~--------~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP--------NKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc--------ccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 55677999999999999999999999999999976643 33459999999999999999999999999987
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.49 E-value=1e-07 Score=82.46 Aligned_cols=70 Identities=24% Similarity=0.524 Sum_probs=59.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
...+.||||.||..+|||++|+.+|+.|-++..++|-. +. | ...|||+|++.+.|..||..|||..|--.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~-g--~~vaf~~~~~~~~at~am~~lqg~~~s~~ 276 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RG-G--MPVAFADFEEIEQATDAMNHLQGNLLSSS 276 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CC-C--cceEeecHHHHHHHHHHHHHhhcceeccc
Confidence 34567999999999999999999999999988888743 22 2 34899999999999999999999988543
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=6.1e-08 Score=83.49 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.+.-+||||+|+-..++|+-|.++|.+-|+|..|.|-..+. ++.| ||||.|.++.+..-|++.+||..+.+..
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d----~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e-- 78 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD----QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDE-- 78 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc----CCCc-eeeeecccccchhhhhhhcccchhccch--
Confidence 34568999999999999999999999999999998865332 3666 9999999999999999999999999887
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
|+|++-.
T Consensus 79 ---~q~~~r~ 85 (267)
T KOG4454|consen 79 ---EQRTLRC 85 (267)
T ss_pred ---hhccccc
Confidence 7777654
No 83
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.46 E-value=4.3e-07 Score=82.80 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
...+|||++||.+++|+++++.|.+||.|..+.++.+.. ..+++||+||.|.+++++++++ ...-..|.+++
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~---~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~---- 167 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKT---TSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKK---- 167 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccc---ccccccceeeEeccccccceec-ccceeeecCce----
Confidence 567999999999999999999999999998888887432 2589999999999999999997 56667777776
Q ss_pred ceEEEeec
Q 026189 219 TLKIQFAH 226 (242)
Q Consensus 219 ~LrV~~ar 226 (242)
+.|.-|-
T Consensus 168 -vevkrA~ 174 (311)
T KOG4205|consen 168 -VEVKRAI 174 (311)
T ss_pred -eeEeecc
Confidence 6666554
No 84
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.38 E-value=2.2e-06 Score=74.04 Aligned_cols=78 Identities=37% Similarity=0.675 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..++.+||+.|||.+++.+.|..+|.+|...++|+++. .++ +.|||+|.+...|..|...+++..|--.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~---~~~-----~iAfve~~~d~~a~~a~~~lq~~~it~~--- 211 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP---PRS-----GIAFVEFLSDRQASAAQQALQGFKITKK--- 211 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc---CCC-----ceeEEecchhhhhHHHhhhhccceeccC---
Confidence 56778999999999999999999999999999999986 333 4999999999999999999999999742
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
+.++|.|++
T Consensus 212 -~~m~i~~a~ 220 (221)
T KOG4206|consen 212 -NTMQITFAK 220 (221)
T ss_pred -ceEEecccC
Confidence 248998886
No 85
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.36 E-value=1.3e-06 Score=76.64 Aligned_cols=82 Identities=13% Similarity=0.220 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
......+||+|+.+.+|.++++.+|+.||.|..+.+..+ +..+++|||+||+|.+.+.++.|+. |+|..|.++.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d---~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~-- 171 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKD---KFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPA-- 171 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeecc---ccCCCcceeEEEecccHhhhHHHhh-cCCccccccc--
Confidence 345678999999999999999999999999988888764 3335789999999999999999997 9999999988
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
+.|++.+-
T Consensus 172 ---i~vt~~r~ 179 (231)
T KOG4209|consen 172 ---IEVTLKRT 179 (231)
T ss_pred ---ceeeeeee
Confidence 88888874
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.15 E-value=1.9e-05 Score=60.37 Aligned_cols=84 Identities=15% Similarity=0.291 Sum_probs=64.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPF--VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~f--G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
+||-|.|||...|.++|.+++... |.+.-+-|..+ .++ ..+.|||||.|.+.+.|.+-.+.++|..+.... ..+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiD--f~~-~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~-s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPID--FKN-KCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN-SKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeee--ccC-CCceEEEEEEcCCHHHHHHHHHHHcCCccccCC-CCc
Confidence 689999999999999988887642 44443444333 222 478999999999999999999999999997543 234
Q ss_pred ceEEEeecCC
Q 026189 219 TLKIQFAHFP 228 (242)
Q Consensus 219 ~LrV~~ar~~ 228 (242)
.+.|.||+--
T Consensus 78 vc~i~yAriQ 87 (97)
T PF04059_consen 78 VCEISYARIQ 87 (97)
T ss_pred EEEEehhHhh
Confidence 5789999743
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.10 E-value=3.5e-06 Score=74.09 Aligned_cols=73 Identities=19% Similarity=0.378 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
..-+||-|-|..+++++.|...|.+|-.....+++++ +..++++||+||.|.+..++..|+++|+|..+..+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRd---kRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRD---KRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhcccccc---ccccccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 4459999999999999999999999988888888874 333699999999999999999999999999998876
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=3.2e-06 Score=81.16 Aligned_cols=83 Identities=29% Similarity=0.479 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....+++||++||..+++++++++...||+++..+++.+.. .|.++||||.+|.+..-...|+..|||..+.+++
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~---~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~-- 360 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA---TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK-- 360 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc---cccccceeeeeeeCCcchhhhhcccchhhhcCce--
Confidence 34567999999999999999999999999999999987432 2589999999999999999999999999999988
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|.|+.|..
T Consensus 361 ---lvvq~A~~ 368 (500)
T KOG0120|consen 361 ---LVVQRAIV 368 (500)
T ss_pred ---eEeehhhc
Confidence 99998864
No 89
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.01 E-value=3.4e-05 Score=57.39 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=47.2
Q ss_pred CEEEEcCCCCCCCHHH----HHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 141 NLLFVDGLPTDCTRRE----VSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 141 ~tLfVgnLp~~~te~e----L~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..|||.|||.+.+... |+.++..+|+- -+.|. .+.|+|.|.+.+.|++|.+.|+|..+.|++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGk-Vl~v~-----------~~tAilrF~~~~~A~RA~KRmegEdVfG~k-- 68 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGK-VLSVS-----------GGTAILRFPNQEFAERAQKRMEGEDVFGNK-- 68 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE-------------TT-EEEEESSHHHHHHHHHHHTT--SSSS---
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCE-EEEEe-----------CCEEEEEeCCHHHHHHHHHhhcccccccce--
Confidence 4699999999988754 66777788761 12221 138999999999999999999999999999
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|.|+|....
T Consensus 69 ---I~v~~~~~~ 77 (90)
T PF11608_consen 69 ---ISVSFSPKN 77 (90)
T ss_dssp ----EEESS--S
T ss_pred ---EEEEEcCCc
Confidence 999998543
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.90 E-value=7.9e-05 Score=69.52 Aligned_cols=75 Identities=21% Similarity=0.376 Sum_probs=67.6
Q ss_pred CCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 140 SNLLFVDGLPTD-CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 140 ~~tLfVgnLp~~-~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
++.|-|.||..+ +|.+-|..+|.-||+|..|+|..++. --|.|.+.+...|+-|++.|+|..+.|++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~---- 364 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--------DNALIQMSDGQQAQLAMEHLEGHKLYGKK---- 364 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--------cceeeeecchhHHHHHHHHhhcceecCce----
Confidence 678889998865 79999999999999999999987422 26999999999999999999999999998
Q ss_pred ceEEEeecC
Q 026189 219 TLKIQFAHF 227 (242)
Q Consensus 219 ~LrV~~ar~ 227 (242)
|+|.++|.
T Consensus 365 -lrvt~SKH 372 (492)
T KOG1190|consen 365 -LRVTLSKH 372 (492)
T ss_pred -EEEeeccC
Confidence 99999996
No 91
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.82 E-value=6.1e-05 Score=58.35 Aligned_cols=59 Identities=20% Similarity=0.350 Sum_probs=38.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCc
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 208 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~ 208 (242)
+.|+|.++...++.++|+++|++||.|..|.+..- .. -|||-|.+.+.|+.|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-------~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-------DT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--------S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-------CC--EEEEEECCcchHHHHHHHHHhc
Confidence 57899999999999999999999999999888541 11 7999999999999998876544
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.72 E-value=7.3e-05 Score=69.72 Aligned_cols=79 Identities=15% Similarity=0.272 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
+++.+|+..|+|..++|++|+++|..-|..++..... ++++-++.+.+++.+.|..|+-.++.+.+.+..
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-------~kd~kmal~q~~sveeA~~ali~~hnh~lgen~--- 481 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-------QKDRKMALPQLESVEEAIQALIDLHNHYLGENH--- 481 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-------CCCcceeecccCChhHhhhhccccccccCCCCc---
Confidence 4667999999999999999999999988876655443 233339999999999999999999999998763
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
.|||.|++.
T Consensus 482 -hlRvSFSks 490 (492)
T KOG1190|consen 482 -HLRVSFSKS 490 (492)
T ss_pred -eEEEEeecc
Confidence 699999985
No 93
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.65 E-value=1.5e-05 Score=76.36 Aligned_cols=81 Identities=22% Similarity=0.387 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....+|+|+--|+..+++.+|.++|+.+|.|.+|++|.+ ..+ .+++|.|||+|.+.+....|+ +|.|..+.+-.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~D--r~s-~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~p-- 249 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGD--RNS-RRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVP-- 249 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecc--ccc-hhhcceeEEEEecccchhhHh-hhcCCcccCce--
Confidence 445679999999999999999999999999999999985 333 589999999999999999999 99999999976
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
|.|+...
T Consensus 250 ---v~vq~sE 256 (549)
T KOG0147|consen 250 ---VIVQLSE 256 (549)
T ss_pred ---eEecccH
Confidence 8887664
No 94
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.63 E-value=0.00019 Score=66.39 Aligned_cols=78 Identities=26% Similarity=0.233 Sum_probs=64.0
Q ss_pred CCCEEEE--cCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 139 ESNLLFV--DGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 139 ~~~tLfV--gnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
+++.|.+ =|--+.||-|-|..+....|+|..|.|+++ +-.-|.|+|++.++|++|..+|||..|.-..
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--------ngVQAmVEFdsv~~AqrAk~alNGADIYsGC-- 188 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--------NGVQAMVEFDSVEVAQRAKAALNGADIYSGC-- 188 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--------cceeeEEeechhHHHHHHHhhcccccccccc--
Confidence 3444443 455567899999999999999999988752 3358999999999999999999999997655
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
++|||+|||.
T Consensus 189 -CTLKIeyAkP 198 (494)
T KOG1456|consen 189 -CTLKIEYAKP 198 (494)
T ss_pred -eeEEEEecCc
Confidence 4799999995
No 95
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00013 Score=69.75 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=52.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCcccc---EEEEEeCCHHHHHHHHHHHC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMV---LCFVEFDDPKCARTAMDALH 206 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kG---faFV~F~~~~~Ae~A~~~L~ 206 (242)
.-+++||||+||++++|++|...|..||.+. |..-.+...+..-.++| |+|+.|+++.++..-+.++.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 3467999999999999999999999999864 44432222333346677 99999999999988776654
No 96
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.61 E-value=5.4e-05 Score=69.42 Aligned_cols=82 Identities=18% Similarity=0.350 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCce
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--------IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYK 209 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~--------vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~ 209 (242)
....+|||-+||..+++++|.++|.+++.|+. |.|.++ .+ +++.||=|-|.|++..+|++|++-+++..
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~d--ke-T~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTD--KE-TGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcccc--cc-ccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 34568999999999999999999999988754 344432 23 36999999999999999999999999999
Q ss_pred eCCCCCCCCceEEEeecC
Q 026189 210 FDDKKPDSPTLKIQFAHF 227 (242)
Q Consensus 210 i~g~~~~~~~LrV~~ar~ 227 (242)
+.+.. |+|.+|..
T Consensus 141 f~gn~-----ikvs~a~~ 153 (351)
T KOG1995|consen 141 FCGNT-----IKVSLAER 153 (351)
T ss_pred ccCCC-----chhhhhhh
Confidence 99976 88888864
No 97
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.52 E-value=0.00016 Score=65.51 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=68.8
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 139 ESNLLF-VDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 139 ~~~tLf-VgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++| |++|++.+++++|+..|..+|.|..+++.. ...++..+||+||+|.+..++..++.. +...+.++.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~---~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~--- 255 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPT---DEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRP--- 255 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCC---CCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcc---
Confidence 344555 999999999999999999999999988876 455579999999999999999999877 888888876
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
+.|.+.+.
T Consensus 256 --~~~~~~~~ 263 (285)
T KOG4210|consen 256 --LRLEEDEP 263 (285)
T ss_pred --cccccCCC
Confidence 88888874
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=8.1e-05 Score=64.58 Aligned_cols=72 Identities=21% Similarity=0.370 Sum_probs=61.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....+.|+|-+++..+.+.+|.++|+++|.+.+..+ ..+++||+|...++|.+|++.|++.++.++.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~-- 162 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRR-- 162 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-----------hccccceeehhhhhhhhcchhccchhhcCce--
Confidence 445678999999999999999999999999855433 1238999999999999999999999999988
Q ss_pred CCceEEEe
Q 026189 217 SPTLKIQF 224 (242)
Q Consensus 217 ~~~LrV~~ 224 (242)
|++..
T Consensus 163 ---l~~~~ 167 (216)
T KOG0106|consen 163 ---ISVEK 167 (216)
T ss_pred ---eeecc
Confidence 88833
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.46 E-value=0.00043 Score=65.92 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=47.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHH
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDA 204 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~ 204 (242)
.-|=+-+|||.+|++||.++|+.++ |..+.+.+ ..|+..|=|||+|++++++++|++.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r-----~~Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR-----RNGRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEec-----cCCCcCcceEEEeechHHHHHHHHh
Confidence 3455689999999999999999875 77766643 2258888999999999999999853
No 100
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.38 E-value=0.00052 Score=62.87 Aligned_cols=83 Identities=19% Similarity=0.367 Sum_probs=64.2
Q ss_pred CCCEEEEcCCCCCCCHHHH------HHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 139 ESNLLFVDGLPTDCTRREV------SHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL------~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
..+-+||-+|++.+..+|+ .++|.+||.|+.|.+-++.+.-+.-....-.||+|.+.++|.++|.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4467899999999887772 4899999999998876643221111111224999999999999999999999999
Q ss_pred CCCCCCceEEEeec
Q 026189 213 KKPDSPTLKIQFAH 226 (242)
Q Consensus 213 ~~~~~~~LrV~~ar 226 (242)
+- |+..|+-
T Consensus 193 r~-----lkatYGT 201 (480)
T COG5175 193 RV-----LKATYGT 201 (480)
T ss_pred ce-----EeeecCc
Confidence 87 9988874
No 101
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.32 E-value=0.00046 Score=46.85 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=40.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHH
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM 202 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~ 202 (242)
+.|-|.+.+.+..+. +..+|.+||+|.++.+-. ..-+.||+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~---------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE---------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC---------CCcEEEEEECCHHHHHhhC
Confidence 567788888776644 555888999999987731 1128999999999999985
No 102
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.28 E-value=0.00035 Score=65.61 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=57.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEec---CCCCCCCcc-------ccEEEEEeCCHHHHHHHHHHHCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHK---EPRRTGDRA-------MVLCFVEFDDPKCARTAMDALHG 207 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~---~~~~~ggk~-------kGfaFV~F~~~~~Ae~A~~~L~G 207 (242)
-+++||.+-|||.+-.-+-|.+||+.+|.|+.|+|..- ...-++... +-||+|+|+..+.|.+|.+.|+-
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47889999999999999999999999999999999762 122222233 56899999999999999987754
Q ss_pred c
Q 026189 208 Y 208 (242)
Q Consensus 208 ~ 208 (242)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.19 E-value=0.0062 Score=60.50 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=61.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCc
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYRE-IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 219 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~-vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~ 219 (242)
+.|-+-|+|++++-+||.++|.-|--+-. |++-..++ |+.-|=|.|-|++.++|.+|...|++.+|..++
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~----G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~----- 938 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD----GVPTGECMVAFESQEEARRASMDLDGQKIRNRV----- 938 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC----CCcccceeEeecCHHHHHhhhhccccCccccee-----
Confidence 47788999999999999999999866533 44433222 577789999999999999999999999999987
Q ss_pred eEEEe
Q 026189 220 LKIQF 224 (242)
Q Consensus 220 LrV~~ 224 (242)
++|.+
T Consensus 939 V~l~i 943 (944)
T KOG4307|consen 939 VSLRI 943 (944)
T ss_pred EEEEe
Confidence 77653
No 104
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0013 Score=63.82 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=60.0
Q ss_pred CCEEEEcCCCCCCCH------HHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 140 SNLLFVDGLPTDCTR------REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 140 ~~tLfVgnLp~~~te------~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
-+.|+|.|+|-.-.. .-|..+|+++|++....+..++. |..+||.|++|++..+|+.|++.|||+.++-.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 357889999864332 24678999999998887765544 46899999999999999999999999999864
Q ss_pred CCCCCceEEE
Q 026189 214 KPDSPTLKIQ 223 (242)
Q Consensus 214 ~~~~~~LrV~ 223 (242)
. ++.|.
T Consensus 134 H----tf~v~ 139 (698)
T KOG2314|consen 134 H----TFFVR 139 (698)
T ss_pred c----eEEee
Confidence 3 45554
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.16 E-value=0.00056 Score=69.15 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....+.+||++|...+.-..|...|..||.|..|.+-+ -..|++|.|++...|+.|+..|-|..|.+-+
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---------gq~yayi~yes~~~aq~a~~~~rgap~G~P~-- 520 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---------GQPYAYIQYESPPAAQAATHDMRGAPLGGPP-- 520 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---------CCcceeeecccCccchhhHHHHhcCcCCCCC--
Confidence 44667899999999999999999999999998877733 1239999999999999999999999998865
Q ss_pred CCceEEEeecCCCCCCCC
Q 026189 217 SPTLKIQFAHFPFHLPSD 234 (242)
Q Consensus 217 ~~~LrV~~ar~~~~~~~~ 234 (242)
+.|+|.|+..++..|.+
T Consensus 521 -~r~rvdla~~~~~~Pqq 537 (975)
T KOG0112|consen 521 -RRLRVDLASPPGATPQQ 537 (975)
T ss_pred -cccccccccCCCCChhh
Confidence 44999999988776643
No 106
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.13 E-value=0.00043 Score=63.65 Aligned_cols=71 Identities=10% Similarity=0.185 Sum_probs=59.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFV--GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG--~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
-.+|||||-|.+|++||.+.....| +|.++++.. ++..|.+||||.|...+..+.++-|+.|--..|.|..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFE---NR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFE---NRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhh---cccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 3799999999999999988877654 455566654 4555799999999999999999999999999998876
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.89 E-value=0.0072 Score=56.20 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=68.5
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPTDC-TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~-te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
..+++.+.|-+|.... +-+-|..+|..||.|+.|+.++. ++ |-|.|+..+..+.++|+..||+..+.|.+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT---k~-----gtamVemgd~~aver~v~hLnn~~lfG~k- 354 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT---KP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGK- 354 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec---cc-----ceeEEEcCcHHHHHHHHHHhccCccccce-
Confidence 4567889999999764 56779999999999999999973 33 38999999999999999999999999988
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|.|.+++..
T Consensus 355 ----l~v~~SkQ~ 363 (494)
T KOG1456|consen 355 ----LNVCVSKQN 363 (494)
T ss_pred ----EEEeecccc
Confidence 999998853
No 108
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.84 E-value=0.0012 Score=61.52 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=59.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 142 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 142 tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
.|-|.||.+.+|.++++.+|...|+|.+++|+.....-+..-..-.|||.|.+..++..|- .|.+++|.++-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdra 80 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRA 80 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeee
Confidence 7889999999999999999999999999999874333333334448999999999999885 88888888875
No 109
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.78 E-value=0.0069 Score=57.90 Aligned_cols=61 Identities=21% Similarity=0.396 Sum_probs=46.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHH
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYRE-IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDA 204 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~-vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~ 204 (242)
...|=+.+||+.||++||.+||+..--+.. +.++. .+. +++.|=|||.|++.+.||+|+..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~---d~r-gR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPM---DQR-GRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeec---cCC-CCcccceEEEecCHHHHHHHHHH
Confidence 346778999999999999999997533333 33332 222 57888999999999999999843
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0035 Score=60.14 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=55.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhc-CCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHH
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFR-PFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDA 204 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~-~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~ 204 (242)
+-++.+|||||+||.-++.+||..||. -||.|..+-|=.+... +-++|-|=|+|.+..+-.+||++
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~---KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL---KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc---CCCCCcceeeecccHHHHHHHhh
Confidence 356789999999999999999999998 6999999888554222 36788999999999999999864
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.69 E-value=0.00088 Score=67.41 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=68.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCc
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 219 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~ 219 (242)
...|||.|+|+..|.++|+.+++++|.+.+++++. .+. |+++|.+||.|.++.++.++....+...+..+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt---~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~----- 806 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT---VRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENN----- 806 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhh---hhc-cccccceeccCCCcchhhhhcccchhhhhhhcC-----
Confidence 35899999999999999999999999999999876 333 699999999999999999998888877777776
Q ss_pred eEEEeecCC
Q 026189 220 LKIQFAHFP 228 (242)
Q Consensus 220 LrV~~ar~~ 228 (242)
+.|+.+..+
T Consensus 807 ~~v~vsnp~ 815 (881)
T KOG0128|consen 807 GEVQVSNPE 815 (881)
T ss_pred ccccccCCc
Confidence 777775543
No 112
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.62 E-value=0.0019 Score=62.88 Aligned_cols=80 Identities=24% Similarity=0.384 Sum_probs=64.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVG-YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~-i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
....++.|||.||-.-+|.-+|+.++.+-|+ |.+. +| ++-|--|||.|.+.+.|.....+|||.++-..+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm--------DkIKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM--------DKIKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH--------HHhhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 4567889999999999999999999996544 4443 43 234447999999999999999999999997655
Q ss_pred CCCCceEEEeec
Q 026189 215 PDSPTLKIQFAH 226 (242)
Q Consensus 215 ~~~~~LrV~~ar 226 (242)
-+.|.+.|+.
T Consensus 511 --PK~L~adf~~ 520 (718)
T KOG2416|consen 511 --PKHLIADFVR 520 (718)
T ss_pred --CceeEeeecc
Confidence 2568999986
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.55 E-value=0.0073 Score=58.43 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=48.9
Q ss_pred HHHHhhcCCCCeEEEEEEec-CCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceEEEee
Q 026189 156 EVSHLFRPFVGYREIRVIHK-EPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFA 225 (242)
Q Consensus 156 eL~~~F~~fG~i~~vrlv~~-~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV~~a 225 (242)
+++.-+.+||.|..|.+-+. ..... ....|.-||+|.+.+++++|+++|.|.+|.++. +...|-
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~-~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRt-----VvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENP-VPGTGKVFVEFADTEDSQRAMEELTGRKFANRT-----VVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCc-CCCcccEEEEecChHHHHHHHHHccCceeCCcE-----EEEEec
Confidence 34555668999999888664 22222 244567899999999999999999999999997 666654
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.40 E-value=0.0022 Score=56.70 Aligned_cols=76 Identities=11% Similarity=0.226 Sum_probs=60.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCC---------CCCCccccEEEEEeCCHHHHHHHHHHHCCce
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPR---------RTGDRAMVLCFVEFDDPKCARTAMDALHGYK 209 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~---------~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~ 209 (242)
..-.||+++||+.+...-|++||.+||.|-.|.|...... .+..+..-=+.|+|.+-..|....+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4458999999999999999999999999998888663221 1111122225689999999999999999999
Q ss_pred eCCCC
Q 026189 210 FDDKK 214 (242)
Q Consensus 210 i~g~~ 214 (242)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99987
No 115
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.33 E-value=0.02 Score=42.58 Aligned_cols=56 Identities=20% Similarity=0.453 Sum_probs=42.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 206 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~ 206 (242)
.....||. .|.++...||.++|+.||.|. |..+.+ + -|||...+++.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-T---------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-T---------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-T---------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-C---------cEEEEeecHHHHHHHHHHhc
Confidence 34567776 999999999999999999864 555531 1 69999999999999998886
No 116
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.96 E-value=0.0045 Score=58.37 Aligned_cols=71 Identities=20% Similarity=0.376 Sum_probs=54.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCce-eCCCCCCC
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPF--VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYK-FDDKKPDS 217 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~f--G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~-i~g~~~~~ 217 (242)
++||++||.+.++..+|+.+|... +.-.. .|+ ++ ||+||+..+...|.+|++.++|.. +.|++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~-fl~-----k~-----gyafvd~pdq~wa~kaie~~sgk~elqGkr--- 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQ-FLV-----KS-----GYAFVDCPDQQWANKAIETLSGKVELQGKR--- 67 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcc-eee-----ec-----ceeeccCCchhhhhhhHHhhchhhhhcCce---
Confidence 579999999999999999999743 21111 222 22 499999999999999999999874 55555
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
+.|.+.-.
T Consensus 68 --~e~~~sv~ 75 (584)
T KOG2193|consen 68 --QEVEHSVP 75 (584)
T ss_pred --eeccchhh
Confidence 77776654
No 117
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.92 E-value=0.029 Score=43.11 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=50.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecC-------CCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKE-------PRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 211 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~-------~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~ 211 (242)
..+-|.|-+.|.. ....|.+.|++||.|++..-+.+. +... ...+-.|+|+++.+|++|+ .-||..+.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~---~~NWi~I~Y~~~~~A~rAL-~~NG~i~~ 79 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS---GGNWIHITYDNPLSAQRAL-QKNGTIFS 79 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-C---CTTEEEEEESSHHHHHHHH-TTTTEEET
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCC---CCCEEEEECCCHHHHHHHH-HhCCeEEc
Confidence 3456788888887 456777899999999887511000 0111 1238999999999999999 77999998
Q ss_pred CCCCCCCceEEEeec
Q 026189 212 DKKPDSPTLKIQFAH 226 (242)
Q Consensus 212 g~~~~~~~LrV~~ar 226 (242)
+.- -+-|.+.+
T Consensus 80 g~~----mvGV~~~~ 90 (100)
T PF05172_consen 80 GSL----MVGVKPCD 90 (100)
T ss_dssp TCE----EEEEEE-H
T ss_pred CcE----EEEEEEcH
Confidence 753 14466653
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.86 E-value=0.0024 Score=64.72 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
..+.|||+|||+..+++.+|+..|..+|.|.+|.|-. +.. +.---|+||.|.+...+.+|+.++.+..|....
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKt--P~~--~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~--- 442 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKT--PHI--KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT--- 442 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhcccccccccc--CCC--CcccchhhhhhhccccCcccchhhcCCccccCc---
Confidence 3577999999999999999999999999999998843 211 122349999999999999999999999887765
Q ss_pred CceEEEee
Q 026189 218 PTLKIQFA 225 (242)
Q Consensus 218 ~~LrV~~a 225 (242)
+++-+.
T Consensus 443 --~r~glG 448 (975)
T KOG0112|consen 443 --HRIGLG 448 (975)
T ss_pred --cccccc
Confidence 666655
No 119
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.74 E-value=0.032 Score=51.41 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=59.1
Q ss_pred CCCEEEEcCCCC----CCC-------HHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCC
Q 026189 139 ESNLLFVDGLPT----DCT-------RREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 207 (242)
Q Consensus 139 ~~~tLfVgnLp~----~~t-------e~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G 207 (242)
..++|.|.|+=. +.+ .++|++-..+||.|..|.|.- + .+.|.+-|.|.+.+.|+.+++.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d---~----hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD---R----HPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec---c----CCCceeEEEeCChHHHHHHHHHhcC
Confidence 456898988742 223 345667788999999998864 2 4557999999999999999999999
Q ss_pred ceeCCCCCCCCceEEEee
Q 026189 208 YKFDDKKPDSPTLKIQFA 225 (242)
Q Consensus 208 ~~i~g~~~~~~~LrV~~a 225 (242)
.-|+++. |..+.-
T Consensus 337 R~fdgRq-----l~A~i~ 349 (382)
T KOG1548|consen 337 RWFDGRQ-----LTASIW 349 (382)
T ss_pred eeecceE-----EEEEEe
Confidence 9999998 776554
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.48 E-value=0.08 Score=49.62 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=46.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhcC---C-CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHH
Q 026189 142 LLFVDGLPTDCTRREVSHLFRP---F-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDA 204 (242)
Q Consensus 142 tLfVgnLp~~~te~eL~~~F~~---f-G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~ 204 (242)
.|-..+||+++++.|+.++|.+ . +..+.|-.++..+ |+.-|=|||.|..++.|+.|+..
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd----grpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD----GRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC----CCcccceEEEecCHHHHHHHHHH
Confidence 5556899999999999999963 2 3556666665322 57778999999999999999854
No 121
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.45 E-value=0.24 Score=38.63 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=57.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVG-YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~-i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.....+.+...|.-++.++|..+...+-+ |..++|+++.. .++-.+.++|.+.+.|+.=.+.+||..+.--.+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-----pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE 85 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-----PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPE 85 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-----CceEEEEEEECCHHHHHHHHHHhCCCccCCCCCc
Confidence 34455666677777777888877777644 56788887533 3455789999999999999999999999876666
Q ss_pred CCce
Q 026189 217 SPTL 220 (242)
Q Consensus 217 ~~~L 220 (242)
..+|
T Consensus 86 ~Chv 89 (110)
T PF07576_consen 86 TCHV 89 (110)
T ss_pred eeEE
Confidence 5443
No 122
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.42 E-value=0.028 Score=47.34 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=56.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcC-CCCe---EEEEE-EecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRP-FVGY---REIRV-IHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~-fG~i---~~vrl-v~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
....+|.|.+||+.+||+++.+.+.. +++. ..+.- ..+...+. ....-|||.|.+.+++..-...++|+.|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~--~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKP--PTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTT--S--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCC--CcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34569999999999999999987777 6665 33331 11222222 234479999999999999999999999988
Q ss_pred CCCCCCceEEEeecC
Q 026189 213 KKPDSPTLKIQFAHF 227 (242)
Q Consensus 213 ~~~~~~~LrV~~ar~ 227 (242)
.+.....-.|+||-+
T Consensus 83 ~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 83 SKGNEYPAVVEFAPY 97 (176)
T ss_dssp TTS-EEEEEEEE-SS
T ss_pred CCCCCcceeEEEcch
Confidence 763334567888866
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.30 E-value=0.0022 Score=64.70 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=56.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 211 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~ 211 (242)
..++||.||+..+.+.+|...|..++.+..+++.. ....++.+|+|||+|...+.+.+|+....+..+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~---h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVI---HKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHH---HhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 35899999999999999999999999988877762 2222588999999999999999999766655544
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.17 E-value=0.06 Score=48.79 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=52.2
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceEEEeec
Q 026189 154 RREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 154 e~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV~~ar 226 (242)
|+|+++-..+||.|..|.|........ .-..--||+|+..++|.+|+-.|||..|.|+. ++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~--deavRiFveF~r~e~aiKA~VdlnGRyFGGr~-----v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPE--DEAVRIFVEFERVESAIKAVVDLNGRYFGGRV-----VSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCcc--chhheeeeeeccHHHHHHHHHhcCCceeccee-----eeheecc
Confidence 467888999999999988776432221 23346799999999999999999999999987 7777653
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.04 E-value=0.093 Score=36.85 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=43.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC---CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHH
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPF---VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL 205 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~f---G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L 205 (242)
..+|+|.|+. +++.++|+.+|..| .....|..+-+. -|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 4689999985 58889999999887 234567777532 4889999999999999764
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.86 E-value=0.029 Score=49.76 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=53.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 206 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~ 206 (242)
..|||-||+.-++.+.|..-|+.||+|....++.+.. +++-+=++|.|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r----~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR----GKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc----ccccccchhhhhcchhHHHHHHHhc
Confidence 7899999999999999999999999998766655543 3555678999999999999998884
No 127
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.75 E-value=0.25 Score=42.19 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
..++.|.+||..-+.++|+++...-|+|....+.+ . |++.|+|...++.+-|+..|+..++.-
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r-----D-----g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR-----D-----GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec-----c-----cceeeeeeehhhHHHHHHhhccccccC
Confidence 45889999999999999999999999988777744 2 289999999999999999999888765
No 128
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.67 E-value=0.088 Score=43.13 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=43.8
Q ss_pred HHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceEEEeec
Q 026189 156 EVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 156 eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV~~ar 226 (242)
+|-+.|..||+++=+|++.. .-.|+|.+-++|-+|+ .++|.++.|+. |+|..-.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaal-s~dg~~v~g~~-----l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAAL-SLDGIQVNGRT-----LKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHH-HGCCSEETTEE-----EEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHH-ccCCcEECCEE-----EEEEeCC
Confidence 67888999999888888641 4789999999999998 89999999987 8887543
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.28 E-value=0.018 Score=52.81 Aligned_cols=80 Identities=21% Similarity=0.426 Sum_probs=59.9
Q ss_pred CCEEEEcCCCCCCCHHHH---HHhhcCCCCeEEEEEEecCC--CCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 140 SNLLFVDGLPTDCTRREV---SHLFRPFVGYREIRVIHKEP--RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL---~~~F~~fG~i~~vrlv~~~~--~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
.+-+||-+|+..+.++++ .+.|.+||.|..|.+..+.. ...+ ...-++|+|+..++|..||..++|+..+++.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~--~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSG--GTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCC--CCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 356889999988765544 46888999999888765431 1222 2223799999999999999999999999986
Q ss_pred CCCCceEEEeec
Q 026189 215 PDSPTLKIQFAH 226 (242)
Q Consensus 215 ~~~~~LrV~~ar 226 (242)
|+..++-
T Consensus 155 -----lka~~gt 161 (327)
T KOG2068|consen 155 -----LKASLGT 161 (327)
T ss_pred -----hHHhhCC
Confidence 7766664
No 130
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.11 E-value=0.027 Score=49.96 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=47.7
Q ss_pred HHHhhc-CCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceEEEeec
Q 026189 157 VSHLFR-PFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 157 L~~~F~-~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV~~ar 226 (242)
|...|. +||+|+++.+-. .-+..-+|=.||.|...++|++|++.||+--+.++. |..++..
T Consensus 85 ~f~E~~~kygEiee~~Vc~----Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~p-----i~ae~~p 146 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCD----NLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRP-----IHAELSP 146 (260)
T ss_pred HHHHHHHHhhhhhhhhhhc----ccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCc-----ceeeecC
Confidence 333344 899999986642 223466778899999999999999999999999987 8877764
No 131
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.10 E-value=0.094 Score=44.61 Aligned_cols=60 Identities=25% Similarity=0.445 Sum_probs=45.2
Q ss_pred CHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC--CceeCCCCCCCCceEEEeec
Q 026189 153 TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH--GYKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 153 te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~--G~~i~g~~~~~~~LrV~~ar 226 (242)
..+.|+++|..|+.+......+ +.+-..|.|.+.+.|++|...|+ ++.+.+.. |+|.|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~---------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~-----l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK---------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKR-----LRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET---------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE------EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcC---------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCc-----eEEEEcc
Confidence 3478999999999998877653 33468999999999999999999 99999988 9999995
No 132
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.01 E-value=0.082 Score=52.37 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=58.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
+.++.-++||+|+...+..+-++.+...+|-|..++.+. |+|.+|........|+..|+-..+++.+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------------fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------------FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------------hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 345677999999999999999999999999888776642 9999999999999999999988888876
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.92 E-value=0.053 Score=54.12 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=60.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 134 PLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE-IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 134 ~~~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~-vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
+.+......|||..||..+++.++-++|...--|++ |.|.. -..++-++-|||.|..++++.+|...-+-+-+..
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~----~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~ 503 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR----LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH 503 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEecc----CCcccccchhhheeccccccchhhhcccccccCc
Confidence 345667789999999999999999999998766766 44443 2225778899999999999988875555444444
Q ss_pred CCCCCCceEEE
Q 026189 213 KKPDSPTLKIQ 223 (242)
Q Consensus 213 ~~~~~~~LrV~ 223 (242)
+. |+|.
T Consensus 504 r~-----irv~ 509 (944)
T KOG4307|consen 504 RI-----IRVD 509 (944)
T ss_pred eE-----EEee
Confidence 44 7765
No 134
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.42 E-value=0.13 Score=48.31 Aligned_cols=73 Identities=16% Similarity=0.293 Sum_probs=55.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCC-eEE--EEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVG-YRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~-i~~--vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
.....|-+.+||++.+.++|.++|..|-. |.. |.++. +.. |+.-|=|||+|.+.+.|..|+...+......+-
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~---N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL---NGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE---cCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 33557888999999999999999987733 222 55554 222 577889999999999999999888877765543
No 135
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.02 E-value=0.42 Score=46.82 Aligned_cols=79 Identities=13% Similarity=0.243 Sum_probs=58.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcC--CCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHH-------HHHCCce
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRP--FVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM-------DALHGYK 209 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~--fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~-------~~L~G~~ 209 (242)
..|.+.+..||..+-+++++.||+. +-++++|..... + -=||+|++..+|++|. ++++|+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----D------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----C------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3456778999999999999999974 677888888641 1 2599999999999995 4678888
Q ss_pred eCCCCCCCCceEEEeecCCCC
Q 026189 210 FDDKKPDSPTLKIQFAHFPFH 230 (242)
Q Consensus 210 i~g~~~~~~~LrV~~ar~~~~ 230 (242)
|.-|. +.|.--|+++..+
T Consensus 244 ImARI---Kaintf~pkngyr 261 (684)
T KOG2591|consen 244 IMARI---KAINTFFPKNGYR 261 (684)
T ss_pred hhhhh---hhhhcccCCCCCC
Confidence 88775 3355333444443
No 136
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.61 E-value=1 Score=37.03 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=54.1
Q ss_pred CCCCCEEEEcCCCCCCCH-H---HHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 137 KGESNLLFVDGLPTDCTR-R---EVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te-~---eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
+++=.||.|.=|..++.. + .+...++.||+|.+|.+.- +.-|.|.|.+..+|=.|+.+++. ...|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----------rqsavVvF~d~~SAC~Av~Af~s-~~pg 151 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----------RQSAVVVFKDITSACKAVSAFQS-RAPG 151 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----------CceEEEEehhhHHHHHHHHhhcC-CCCC
Confidence 455578888777766632 3 3555667899999998853 22699999999999999999987 4455
Q ss_pred CCCCCCceEEEee
Q 026189 213 KKPDSPTLKIQFA 225 (242)
Q Consensus 213 ~~~~~~~LrV~~a 225 (242)
.. ++..|-
T Consensus 152 tm-----~qCsWq 159 (166)
T PF15023_consen 152 TM-----FQCSWQ 159 (166)
T ss_pred ce-----EEeecc
Confidence 55 777775
No 137
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.54 E-value=0.16 Score=51.67 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=60.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceE
Q 026189 142 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 221 (242)
Q Consensus 142 tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~Lr 221 (242)
+.++.|.+-..+...|..+|++||.+.+.+..++- -.+.|+|...+.|..|+++|+|.++-.- ..+.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~---------N~alvs~~s~~sai~a~dAl~gkevs~~---g~Ps~ 367 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL---------NMALVSFSSVESAILALDALQGKEVSVT---GAPSR 367 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc---------cchhhhhHHHHHHHHhhhhhcCCccccc---CCcee
Confidence 45556666678888999999999999998876521 1799999999999999999999988543 24699
Q ss_pred EEeecC
Q 026189 222 IQFAHF 227 (242)
Q Consensus 222 V~~ar~ 227 (242)
|.||+.
T Consensus 368 V~~ak~ 373 (1007)
T KOG4574|consen 368 VSFAKT 373 (1007)
T ss_pred EEeccc
Confidence 999984
No 138
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.28 E-value=1.1 Score=42.85 Aligned_cols=77 Identities=19% Similarity=0.373 Sum_probs=63.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCC-CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPF-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~f-G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
.++.|+|=.+|..+|-.||-.|...| -.|.+++++++.. .++=...|+|.+.++|..=.+.+||..|..-.++.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-----pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~ 147 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-----PNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEV 147 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-----CceEEEEEEeccchhHHHHHHHcCCCcCCCCCccc
Confidence 38899999999999999999888765 5578899998433 34447899999999999999999999998877665
Q ss_pred Cce
Q 026189 218 PTL 220 (242)
Q Consensus 218 ~~L 220 (242)
.+|
T Consensus 148 Chl 150 (493)
T KOG0804|consen 148 CHL 150 (493)
T ss_pred eeE
Confidence 543
No 139
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.06 E-value=1.1 Score=31.82 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=41.0
Q ss_pred CCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 151 DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 151 ~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
.++-++++..+++|.- ..|+. .++| =||.|.+..+|+++....+|..+...+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~-----d~tG------fYIvF~~~~Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD-----DRTG------FYIVFNDSKEAERCFRAEDGTLFFTYR 62 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe-----cCCE------EEEEECChHHHHHHHHhcCCCEEEEEE
Confidence 4677899999999864 44443 4443 589999999999999999999887654
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=90.01 E-value=0.23 Score=44.97 Aligned_cols=74 Identities=16% Similarity=0.062 Sum_probs=60.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
...+++|++++.+.+.+.++..+|...|....+.+... +....++++++|.|...+.+..|+.....+....+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~---~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSL---EDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhh---ccccccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 35789999999999999999999999998887777652 222588999999999999999999776666766655
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=89.89 E-value=0.53 Score=45.92 Aligned_cols=45 Identities=16% Similarity=0.314 Sum_probs=37.0
Q ss_pred ccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceEEEeecCC
Q 026189 183 RAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAHFP 228 (242)
Q Consensus 183 k~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV~~ar~~ 228 (242)
.+.|||||.|.+.+++....++++|+.+..-. ..+...|.||+.-
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~Fn-S~Kia~itYArIQ 473 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFN-SEKIASITYARIQ 473 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhc-ceeeeeeehhhhh
Confidence 78899999999999999999999999876543 2335689998853
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.16 E-value=1.3 Score=31.73 Aligned_cols=67 Identities=27% Similarity=0.464 Sum_probs=38.9
Q ss_pred EEEEc-CCCCCCCHHHHHHhhcCCCCe-----EEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 142 LLFVD-GLPTDCTRREVSHLFRPFVGY-----REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 142 tLfVg-nLp~~~te~eL~~~F~~fG~i-----~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
+|||. +=-..++..+|..++..-++| -.|++... |+||+-.. +.|+.+++.|++..+.+++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~gk~- 68 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKGKK- 68 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCCee-
Confidence 45652 233467888888888766544 45666421 89999875 5889999999999999998
Q ss_pred CCCceEEEee
Q 026189 216 DSPTLKIQFA 225 (242)
Q Consensus 216 ~~~~LrV~~a 225 (242)
|+|+.|
T Consensus 69 ----v~ve~A 74 (74)
T PF03880_consen 69 ----VRVERA 74 (74)
T ss_dssp ------EEE-
T ss_pred ----EEEEEC
Confidence 998764
No 143
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.90 E-value=0.38 Score=46.23 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=55.7
Q ss_pred CCEEEEcCCCCCC-CHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 140 SNLLFVDGLPTDC-TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 140 ~~tLfVgnLp~~~-te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
.+.|-+.-.|+.. +..+|...|.+||.|..|.+-- . ---|.|+|.+..+|-.|. ..++..|+++-
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~----~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~---- 437 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY----S-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRF---- 437 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccC----c-----hhhheeeeeccccccchh-ccccceecCce----
Confidence 3445555555555 5678999999999999988731 1 125899999999996664 68899999987
Q ss_pred ceEEEeecC
Q 026189 219 TLKIQFAHF 227 (242)
Q Consensus 219 ~LrV~~ar~ 227 (242)
|||-|-+.
T Consensus 438 -iKl~whnp 445 (526)
T KOG2135|consen 438 -IKLFWHNP 445 (526)
T ss_pred -eEEEEecC
Confidence 99999875
No 144
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=78.94 E-value=0.62 Score=43.91 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=51.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 211 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~ 211 (242)
...|++|.+|+..+-..|+-++|..+|++...++..+ ...-+|-|+|........|+ .++|.++.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask-------~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTASK-------SRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc-------CCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 3478999999999999999999999999988777542 22337889998887777776 56666654
No 145
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.61 E-value=9.4 Score=37.87 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=60.6
Q ss_pred CCCCCCCEEEEcCCCCC-CCHHHHHHhhcCC----CCeEEEEEEecCC--------CCCCCc------------------
Q 026189 135 LKKGESNLLFVDGLPTD-CTRREVSHLFRPF----VGYREIRVIHKEP--------RRTGDR------------------ 183 (242)
Q Consensus 135 ~~~~~~~tLfVgnLp~~-~te~eL~~~F~~f----G~i~~vrlv~~~~--------~~~ggk------------------ 183 (242)
+....+++|-|-||.|+ +...+|.-+|..| |.|++|.|...+= .-. |.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~-GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVH-GPPKELFKPVEEYKESESDD 247 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhccc-CChhhhccccccCcccccch
Confidence 34567889999999987 5778999999887 6789998876310 001 11
Q ss_pred -------------------cccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 184 -------------------AMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 184 -------------------~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
-.=||.|+|.+...|....+.|+|.++....
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 1238999999999999999999999997654
No 146
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.64 E-value=3.8 Score=37.52 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=43.5
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 143 LFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 143 LfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
|-|-++|+.-. .-|..+|.+||+|++...- .+| -|-+|.|.++.+|++|+ ..+|.+|++.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-----~ng----NwMhirYssr~~A~KAL-skng~ii~g~ 259 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-----SNG----NWMHIRYSSRTHAQKAL-SKNGTIIDGD 259 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC-----CCC----ceEEEEecchhHHHHhh-hhcCeeeccc
Confidence 44556665433 4566799999999775432 222 28999999999999999 6688888775
No 147
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=66.65 E-value=5.6 Score=36.28 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=38.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHH
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCA 198 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~A 198 (242)
..-|||+||+.++.-.||+..+.+-+.+ -.+|.++ -++|-||+.|.+...+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk-------g~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK-------GHFGKCFLHFGNRKGV 380 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee-------cCCcceeEecCCccCC
Confidence 3459999999999999999999876653 3455553 2456899999986543
No 148
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=48.66 E-value=30 Score=28.54 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=33.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEe
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIH 174 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~ 174 (242)
......+++.+++..+++.++...|..++.+....+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 45677999999999999999999999999997766654
No 149
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=48.18 E-value=13 Score=31.78 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=50.9
Q ss_pred CCEEEEcCCCCCC-CHH----HHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 140 SNLLFVDGLPTDC-TRR----EVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 140 ~~tLfVgnLp~~~-te~----eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
.+++++-+++.++ ++. ..+.+|.+|-+..-.+++ +++++.-|.|.+.+.|+.|...++.+.|.++.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---------RSFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---------HhhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 3456666666554 222 345667766665544443 33446678999999999999999999999984
Q ss_pred CCCCceEEEeec
Q 026189 215 PDSPTLKIQFAH 226 (242)
Q Consensus 215 ~~~~~LrV~~ar 226 (242)
.++.-|+-
T Consensus 81 ----~~k~yfaQ 88 (193)
T KOG4019|consen 81 ----ELKLYFAQ 88 (193)
T ss_pred ----eEEEEEcc
Confidence 37877775
No 150
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.15 E-value=43 Score=23.51 Aligned_cols=20 Identities=15% Similarity=0.183 Sum_probs=15.8
Q ss_pred HHHHHhhcCCCCeEEEEEEe
Q 026189 155 REVSHLFRPFVGYREIRVIH 174 (242)
Q Consensus 155 ~eL~~~F~~fG~i~~vrlv~ 174 (242)
.+|+++|+..|+|.-+-+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 58999999999987655543
No 151
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=42.34 E-value=42 Score=26.27 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=25.8
Q ss_pred EEEEcCCCCC---------CCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHH
Q 026189 142 LLFVDGLPTD---------CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKC 197 (242)
Q Consensus 142 tLfVgnLp~~---------~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~ 197 (242)
++.|-|++.+ .+.++|++.|+.|..++ ++.+.... -+.|++.|+|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-----gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-----GHTGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-----EEEEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-----CCcEEEEEEECCChH
Confidence 4455566543 24578999999998875 55555322 366799999997433
No 152
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=36.29 E-value=9.9 Score=33.48 Aligned_cols=72 Identities=19% Similarity=0.228 Sum_probs=57.6
Q ss_pred CCCEEEEcC----CCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 139 ESNLLFVDG----LPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 139 ~~~tLfVgn----Lp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
...+++-|+ |...++++.+.+.|++-+.+..+++-.+. . ++++-++|+++.-....-.++...++....-++
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~---d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN---D-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc---c-CCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 345666777 77788999999999999999999886533 2 477889999999888888888888887776654
No 153
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=34.78 E-value=56 Score=30.87 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=51.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEE-ecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYRE-IRVI-HKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~-vrlv-~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
..+.+-|-+||...++.+|.+-..+|-.=.. .... .+....+ .-.+.+||.|...++.+.=.+.++|+++.+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~--~~ysrayinFk~~~dv~ef~~~f~g~ifld~K 81 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRN--HKYSRAYINFKNPEDVEEFRRRFDGYIFLDNK 81 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchh--hhhhhhhhccccHHHHHHHHhhCCceEEecCC
Confidence 3467888999999999988877776533111 1221 1111221 23568999999999988777889999998765
No 154
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=33.23 E-value=26 Score=21.88 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=10.4
Q ss_pred CCCCHHHHHHhhcCCC
Q 026189 150 TDCTRREVSHLFRPFV 165 (242)
Q Consensus 150 ~~~te~eL~~~F~~fG 165 (242)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4788999999998754
No 155
>PF14893 PNMA: PNMA
Probab=32.67 E-value=33 Score=31.88 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=21.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhc
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFR 162 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~ 162 (242)
+..+.|-|.+||.+|+++||++.+.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHH
Confidence 4557789999999999999887765
No 156
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.58 E-value=42 Score=30.67 Aligned_cols=91 Identities=24% Similarity=0.404 Sum_probs=52.7
Q ss_pred CCCCCEEEEcCCCCC------------CCHHHHHHhhcCCCCeEEEEEEecCCCCC--CCcc-----ccEEE--------
Q 026189 137 KGESNLLFVDGLPTD------------CTRREVSHLFRPFVGYREIRVIHKEPRRT--GDRA-----MVLCF-------- 189 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~------------~te~eL~~~F~~fG~i~~vrlv~~~~~~~--ggk~-----kGfaF-------- 189 (242)
.....|||+.+||-. .+|+-|+..|..||.|..|.|.--.+.+. .|+. +||+|
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 456678999888853 35778999999999998876643111110 1233 33433
Q ss_pred -EEeCCHHHHHHHHHHHCCceeCCCCCC---CCceEEEeecC
Q 026189 190 -VEFDDPKCARTAMDALHGYKFDDKKPD---SPTLKIQFAHF 227 (242)
Q Consensus 190 -V~F~~~~~Ae~A~~~L~G~~i~g~~~~---~~~LrV~~ar~ 227 (242)
|.|-....-..|+.+|.|.++.-+--+ -..++|.|.++
T Consensus 226 yvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 333334455677888887765322100 11366777653
No 157
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.18 E-value=99 Score=29.68 Aligned_cols=54 Identities=11% Similarity=0.263 Sum_probs=41.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHH
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM 202 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~ 202 (242)
...|=|-++|.....+||...|..|++ ..++|.+.+.. .+|-.|.+...|..|+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt--------halaVFss~~~AaeaL 444 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT--------HALAVFSSVNRAAEAL 444 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc--------eeEEeecchHHHHHHh
Confidence 357888999999988899999999865 34555553221 6899999999998887
No 158
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=30.73 E-value=78 Score=29.02 Aligned_cols=84 Identities=13% Similarity=0.238 Sum_probs=56.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecC----CCCCCCccccEEEEEeCCHHHHHH----HHHHHCCc--
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKE----PRRTGDRAMVLCFVEFDDPKCART----AMDALHGY-- 208 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~----~~~~ggk~kGfaFV~F~~~~~Ae~----A~~~L~G~-- 208 (242)
..+.|-..|+..+++-.++-.-|.+||.|++|.|+.+. ......+....+.+-|-+.+.+-. .++.|.-+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999988999999999999999999854 111123444577888888766533 22333322
Q ss_pred eeCCCCCCCCceEEEeecC
Q 026189 209 KFDDKKPDSPTLKIQFAHF 227 (242)
Q Consensus 209 ~i~g~~~~~~~LrV~~ar~ 227 (242)
.+.-. .|+|.|..-
T Consensus 94 ~L~S~-----~L~lsFV~l 107 (309)
T PF10567_consen 94 KLKSE-----SLTLSFVSL 107 (309)
T ss_pred hcCCc-----ceeEEEEEE
Confidence 23333 488888874
No 159
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=30.16 E-value=2.3 Score=40.61 Aligned_cols=78 Identities=13% Similarity=0.301 Sum_probs=63.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
..++++-|-|+|+....+-|..+..+||.++.|..+..++ . .-.--|+|.+.+.+..|+..|+|..+....
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~-e-----tavvnvty~~~~~~~~ai~kl~g~Q~en~~--- 148 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS-E-----TAVVNVTYSAQQQHRQAIHKLNGPQLENQH--- 148 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch-H-----HHHHHHHHHHHHHHHHHHHhhcchHhhhhh---
Confidence 4567788999999999999999999999999987765322 1 113457889999999999999999998876
Q ss_pred CceEEEeec
Q 026189 218 PTLKIQFAH 226 (242)
Q Consensus 218 ~~LrV~~ar 226 (242)
++|.|--
T Consensus 149 --~k~~YiP 155 (584)
T KOG2193|consen 149 --LKVGYIP 155 (584)
T ss_pred --hhcccCc
Confidence 8887754
No 160
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=25.10 E-value=1.1e+02 Score=21.68 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=25.4
Q ss_pred CCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEE
Q 026189 152 CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFV 190 (242)
Q Consensus 152 ~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV 190 (242)
.-|.+|+..|-+--+|.++.|+.|+.-.+ |-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~-----G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRK-----GAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeC-----CceeE
Confidence 34567889998889999999998765443 35666
No 161
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.66 E-value=1.9e+02 Score=19.95 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=30.0
Q ss_pred HHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC
Q 026189 155 REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 206 (242)
Q Consensus 155 ~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~ 206 (242)
.++.++..++| +.-.++.- .| .-++.|+.+.+.+.++++.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sG-----sG--~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSG-----SG--GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEET-----TS--SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCC-----CC--CCCeEEEEECCHHHHHHHHHHHH
Confidence 35667777888 55566632 20 12488999989999999887764
No 162
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=22.53 E-value=21 Score=35.30 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=55.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
...++|||.|+++.++-.+|..+++.+-.+..+.+.....-+ +.+-+..|+|.---....|+.+||+..+....
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek---~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEK---NFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHH---HHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 345689999999999999999999988777666554321111 33447789999888888888899998887654
Done!