Query 026189
Match_columns 242
No_of_seqs 207 out of 1463
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 07:40:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.9E-21 9.8E-26 146.1 10.8 81 138-226 17-97 (99)
2 2dnz_A Probable RNA-binding pr 99.8 8.9E-20 3E-24 135.2 13.5 85 138-230 3-87 (95)
3 3s8s_A Histone-lysine N-methyl 99.8 4.8E-20 1.6E-24 142.1 11.7 82 138-227 4-85 (110)
4 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-19 5.4E-24 136.4 14.3 85 137-230 12-99 (105)
5 2la6_A RNA-binding protein FUS 99.8 1.1E-19 3.9E-24 136.1 12.4 85 134-226 7-99 (99)
6 2cq0_A Eukaryotic translation 99.8 1.4E-19 4.8E-24 136.4 12.8 86 137-230 12-97 (103)
7 2dnm_A SRP46 splicing factor; 99.8 1.1E-19 3.6E-24 137.1 11.9 87 136-230 9-95 (103)
8 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-19 4.2E-24 139.5 12.2 86 137-230 22-107 (115)
9 1x5u_A Splicing factor 3B subu 99.8 1.7E-19 5.7E-24 136.3 12.3 87 136-230 11-97 (105)
10 2do4_A Squamous cell carcinoma 99.8 2.9E-19 9.8E-24 134.0 13.4 84 137-229 14-97 (100)
11 2dgs_A DAZ-associated protein 99.8 3.1E-19 1.1E-23 133.6 13.3 85 137-230 7-91 (99)
12 2khc_A Testis-specific RNP-typ 99.8 1.9E-19 6.4E-24 138.9 12.4 83 136-226 36-118 (118)
13 2dgo_A Cytotoxic granule-assoc 99.8 4.1E-19 1.4E-23 136.3 14.0 86 137-230 12-97 (115)
14 1x4a_A Splicing factor, argini 99.8 2E-19 7E-24 137.0 12.1 85 137-232 19-103 (109)
15 2fy1_A RNA-binding motif prote 99.8 1.8E-19 6E-24 139.8 12.0 85 137-230 4-88 (116)
16 4f25_A Polyadenylate-binding p 99.8 1.1E-19 3.8E-24 140.4 10.6 80 139-228 4-83 (115)
17 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.4E-19 4.9E-24 131.8 10.5 82 138-227 4-85 (87)
18 1u6f_A Tcubp1, RNA-binding pro 99.8 3.3E-19 1.1E-23 141.2 13.4 90 136-233 38-127 (139)
19 2cqc_A Arginine/serine-rich sp 99.8 1.8E-19 6.2E-24 133.3 11.1 83 137-227 12-94 (95)
20 1x5s_A Cold-inducible RNA-bind 99.8 2.1E-19 7.2E-24 135.0 11.6 86 137-230 9-94 (102)
21 2dgv_A HnRNP M, heterogeneous 99.8 2.5E-19 8.4E-24 132.0 11.7 84 137-230 5-88 (92)
22 2e5h_A Zinc finger CCHC-type a 99.8 1.9E-19 6.5E-24 133.2 11.0 82 137-226 13-94 (94)
23 2d9p_A Polyadenylate-binding p 99.8 5.6E-19 1.9E-23 133.0 13.7 84 137-230 12-95 (103)
24 1x5t_A Splicing factor 3B subu 99.8 1E-19 3.4E-24 135.2 9.4 87 138-232 3-90 (96)
25 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.2E-19 4.1E-24 131.7 9.5 82 137-226 4-85 (85)
26 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.9E-19 1.3E-23 133.9 12.4 85 136-230 11-95 (103)
27 2cph_A RNA binding motif prote 99.8 5.3E-19 1.8E-23 133.7 12.6 87 136-229 11-98 (107)
28 2dgp_A Bruno-like 4, RNA bindi 99.8 3.1E-19 1E-23 135.0 11.0 87 136-230 9-98 (106)
29 2lkz_A RNA-binding protein 5; 99.8 8E-20 2.8E-24 137.7 7.7 82 138-227 7-94 (95)
30 2cqd_A RNA-binding region cont 99.8 4.9E-19 1.7E-23 136.3 12.3 83 137-228 14-96 (116)
31 3md1_A Nuclear and cytoplasmic 99.8 5E-19 1.7E-23 127.8 11.6 80 140-227 1-80 (83)
32 2jrs_A RNA-binding protein 39; 99.8 7.6E-19 2.6E-23 134.5 13.2 87 134-228 20-106 (108)
33 1whw_A Hypothetical protein ri 99.8 3.9E-19 1.3E-23 132.8 11.3 85 137-229 5-89 (99)
34 2cpf_A RNA binding motif prote 99.8 3.3E-19 1.1E-23 133.0 10.9 88 138-230 3-90 (98)
35 1x4h_A RNA-binding protein 28; 99.8 6.3E-19 2.1E-23 134.2 12.6 86 136-229 11-102 (111)
36 2x1f_A MRNA 3'-END-processing 99.8 2.9E-19 9.8E-24 133.2 10.4 83 139-229 1-83 (96)
37 2ywk_A Putative RNA-binding pr 99.8 2.1E-19 7E-24 133.2 9.6 82 137-227 13-94 (95)
38 2lxi_A RNA-binding protein 10; 99.8 2.9E-20 1E-24 138.3 4.8 81 140-228 1-83 (91)
39 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.5E-19 1.2E-23 133.8 10.8 86 137-230 9-94 (102)
40 2dng_A Eukaryotic translation 99.8 7.8E-19 2.7E-23 132.4 12.6 85 136-230 11-95 (103)
41 2cq3_A RNA-binding protein 9; 99.8 1.3E-18 4.4E-23 131.1 13.7 85 136-230 11-95 (103)
42 2do0_A HnRNP M, heterogeneous 99.8 1.1E-18 3.7E-23 133.6 13.5 83 137-228 12-94 (114)
43 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.4E-19 1.9E-23 142.9 12.3 86 137-230 36-121 (156)
44 1p27_B RNA-binding protein 8A; 99.8 4.3E-19 1.5E-23 134.2 10.7 84 137-228 20-103 (106)
45 3ulh_A THO complex subunit 4; 99.8 5.4E-19 1.8E-23 133.9 11.3 82 136-226 25-106 (107)
46 3ex7_B RNA-binding protein 8A; 99.8 3.2E-19 1.1E-23 139.0 10.1 85 136-228 18-102 (126)
47 4a8x_A RNA-binding protein wit 99.8 3.5E-19 1.2E-23 129.8 9.5 84 139-229 3-86 (88)
48 1wi8_A EIF-4B, eukaryotic tran 99.8 8.9E-19 3E-23 132.3 11.8 85 136-229 11-95 (104)
49 2cpe_A RNA-binding protein EWS 99.8 8.2E-19 2.8E-23 134.3 11.7 86 137-230 12-105 (113)
50 3p5t_L Cleavage and polyadenyl 99.8 1.2E-19 4.1E-24 134.0 6.7 81 141-229 2-84 (90)
51 2cqp_A RNA-binding protein 12; 99.8 3.6E-19 1.2E-23 132.8 9.0 85 137-229 12-96 (98)
52 2div_A TRNA selenocysteine ass 99.8 8E-19 2.7E-23 131.1 10.7 89 137-229 6-95 (99)
53 1x4e_A RNA binding motif, sing 99.8 1.5E-19 5E-24 131.5 6.3 83 137-227 2-84 (85)
54 1oo0_B CG8781-PA, drosophila Y 99.8 4.8E-19 1.7E-23 134.9 9.4 84 137-228 23-106 (110)
55 2dhg_A TRNA selenocysteine ass 99.8 9.3E-19 3.2E-23 131.9 10.9 84 137-229 6-91 (104)
56 1x4c_A Splicing factor, argini 99.8 1.2E-18 4.2E-23 132.8 11.7 79 137-230 12-95 (108)
57 2kxn_B Transformer-2 protein h 99.8 8.8E-19 3E-23 138.5 10.8 85 136-228 42-126 (129)
58 2m2b_A RNA-binding protein 10; 99.8 4.3E-19 1.5E-23 140.0 8.8 86 136-230 19-110 (131)
59 3ns6_A Eukaryotic translation 99.8 3.1E-19 1.1E-23 134.7 7.1 82 138-227 4-92 (100)
60 2cpi_A CCR4-NOT transcription 99.8 9.1E-19 3.1E-23 134.3 9.8 86 138-228 13-101 (111)
61 2ytc_A PRE-mRNA-splicing facto 99.8 1.2E-18 4E-23 126.5 9.9 77 136-226 8-85 (85)
62 1x4d_A Matrin 3; structural ge 99.8 8.9E-19 3E-23 133.9 9.4 80 137-230 12-94 (102)
63 1wex_A Hypothetical protein (r 99.8 3.9E-18 1.3E-22 130.4 13.0 79 137-229 12-92 (104)
64 2dnq_A RNA-binding protein 4B; 99.8 2.9E-18 1E-22 126.2 11.9 78 137-230 5-82 (90)
65 1p1t_A Cleavage stimulation fa 99.8 3.6E-19 1.2E-23 134.0 7.0 85 137-229 5-89 (104)
66 1sjq_A Polypyrimidine tract-bi 99.8 7.1E-19 2.4E-23 135.2 8.6 79 137-229 13-93 (105)
67 3ucg_A Polyadenylate-binding p 99.8 1.2E-18 4.1E-23 127.4 9.4 81 140-229 6-86 (89)
68 2dh8_A DAZ-associated protein 99.8 1.2E-18 4.1E-23 131.6 9.7 85 137-230 13-97 (105)
69 1x5o_A RNA binding motif, sing 99.8 6E-18 2.1E-22 129.6 13.5 88 137-228 22-112 (114)
70 2e5j_A Methenyltetrahydrofolat 99.8 2.3E-18 8E-23 128.6 10.9 79 137-228 16-94 (97)
71 1x4b_A Heterogeneous nuclear r 99.8 9.6E-19 3.3E-23 134.6 9.0 85 137-230 24-108 (116)
72 3s7r_A Heterogeneous nuclear r 99.8 2.6E-18 8.8E-23 125.4 10.7 80 137-225 8-87 (87)
73 2dgx_A KIAA0430 protein; RRM d 99.8 1.8E-18 6.3E-23 129.2 10.1 82 137-229 6-91 (96)
74 2fc8_A NCL protein; structure 99.8 4.7E-18 1.6E-22 127.6 12.1 83 137-230 12-94 (102)
75 3r27_A HnRNP L, heterogeneous 99.8 1.5E-18 5.2E-23 132.3 9.4 78 137-228 18-97 (100)
76 2fc9_A NCL protein; structure 99.8 3.9E-18 1.3E-22 128.0 11.5 82 137-230 12-93 (101)
77 2cpx_A Hypothetical protein FL 99.8 2.9E-18 9.9E-23 131.4 11.0 82 137-230 22-107 (115)
78 2kt5_A RNA and export factor-b 99.8 5.6E-18 1.9E-22 131.9 12.5 85 136-229 31-115 (124)
79 2a3j_A U1 small nuclear ribonu 99.8 2.2E-18 7.6E-23 136.4 10.3 83 136-229 25-111 (127)
80 2cq1_A PTB-like protein L; RRM 99.8 8.8E-18 3E-22 127.9 13.2 78 137-228 12-91 (101)
81 2ek1_A RNA-binding protein 12; 99.8 7.2E-19 2.5E-23 130.3 7.0 82 138-227 13-94 (95)
82 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.5E-18 8.5E-23 140.7 10.9 86 137-230 69-154 (165)
83 2cpj_A Non-POU domain-containi 99.8 6.3E-18 2.2E-22 126.5 12.1 79 137-229 12-90 (99)
84 1s79_A Lupus LA protein; RRM, 99.8 1.6E-18 5.4E-23 132.2 8.9 80 138-227 9-88 (103)
85 1why_A Hypothetical protein ri 99.8 5.8E-18 2E-22 126.3 11.8 79 137-229 14-94 (97)
86 2jwn_A Embryonic polyadenylate 99.8 2E-18 6.9E-23 134.1 9.6 83 139-230 35-117 (124)
87 2lea_A Serine/arginine-rich sp 99.8 6.7E-19 2.3E-23 140.1 6.9 89 136-232 43-131 (135)
88 2dgw_A Probable RNA-binding pr 99.8 5.8E-18 2E-22 124.7 11.5 81 137-228 7-87 (91)
89 2cq4_A RNA binding motif prote 99.8 1.1E-18 3.6E-23 134.0 7.7 81 138-227 23-103 (114)
90 2cqg_A TDP-43, TAR DNA-binding 99.8 8.6E-18 2.9E-22 126.5 12.5 84 136-229 11-94 (103)
91 3n9u_C Cleavage and polyadenyl 99.8 2.3E-18 8E-23 140.6 9.9 81 138-226 53-135 (156)
92 2dgt_A RNA-binding protein 30; 99.8 6.1E-18 2.1E-22 124.9 11.2 78 137-230 7-84 (92)
93 2kn4_A Immunoglobulin G-bindin 99.8 3.9E-18 1.3E-22 137.7 10.9 86 137-230 67-152 (158)
94 1wez_A HnRNP H', FTP-3, hetero 99.8 5.2E-18 1.8E-22 128.8 10.8 83 137-230 12-94 (102)
95 2rs2_A Musashi-1, RNA-binding 99.8 3E-18 1E-22 131.3 9.5 85 136-229 21-105 (109)
96 2ad9_A Polypyrimidine tract-bi 99.8 6E-18 2.1E-22 132.8 11.3 79 137-229 28-108 (119)
97 3lqv_A PRE-mRNA branch site pr 99.8 5.3E-18 1.8E-22 130.1 10.7 80 137-227 5-84 (115)
98 2err_A Ataxin-2-binding protei 99.8 2.8E-18 9.6E-23 131.3 9.1 81 137-227 26-106 (109)
99 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.2E-18 4.2E-23 131.1 6.9 83 136-227 15-97 (100)
100 2kvi_A Nuclear polyadenylated 99.8 4.1E-18 1.4E-22 127.2 9.7 81 137-233 7-88 (96)
101 2nlw_A Eukaryotic translation 99.7 2.6E-18 9E-23 130.5 8.6 82 137-228 12-100 (105)
102 1nu4_A U1A RNA binding domain; 99.7 2E-18 6.7E-23 128.4 7.7 83 136-229 4-90 (97)
103 2mss_A Protein (musashi1); RNA 99.7 1.5E-18 5E-23 123.3 6.5 75 142-225 1-75 (75)
104 2dnp_A RNA-binding protein 14; 99.7 5.9E-18 2E-22 124.5 9.9 80 137-232 6-85 (90)
105 1wf1_A RNA-binding protein RAL 99.7 7.6E-18 2.6E-22 128.5 10.7 78 137-230 24-102 (110)
106 1x4f_A Matrin 3; structural ge 99.7 8.5E-18 2.9E-22 130.6 10.7 79 137-229 22-103 (112)
107 2jvr_A Nucleolar protein 3; RN 99.7 1.6E-18 5.4E-23 134.3 6.6 81 137-229 25-106 (111)
108 2la4_A Nuclear and cytoplasmic 99.7 3.2E-18 1.1E-22 128.4 8.0 77 137-227 24-100 (101)
109 2xnq_A Nuclear polyadenylated 99.7 9.9E-18 3.4E-22 125.8 10.3 78 136-229 18-96 (97)
110 2cpd_A Apobec-1 stimulating pr 99.7 2.3E-17 8E-22 123.4 12.3 78 137-230 12-91 (99)
111 2jvo_A Nucleolar protein 3; nu 99.7 7.8E-18 2.7E-22 129.0 9.9 79 136-230 27-105 (108)
112 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.1E-18 7.2E-23 122.8 6.2 76 141-225 1-76 (77)
113 2dis_A Unnamed protein product 99.7 5.6E-18 1.9E-22 128.6 9.0 85 138-229 6-93 (109)
114 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.1E-18 2.4E-22 133.0 9.8 81 137-225 60-140 (140)
115 1wel_A RNA-binding protein 12; 99.7 4.4E-18 1.5E-22 132.8 8.3 82 137-227 22-103 (124)
116 2dgu_A Heterogeneous nuclear r 99.7 1.5E-17 5.1E-22 125.5 10.9 78 137-230 8-85 (103)
117 2cqh_A IGF-II mRNA-binding pro 99.7 5.5E-18 1.9E-22 125.3 8.2 78 137-229 5-84 (93)
118 1x4g_A Nucleolysin TIAR; struc 99.7 1.2E-17 4.2E-22 127.2 10.3 79 137-229 22-100 (109)
119 2hvz_A Splicing factor, argini 99.7 6.5E-18 2.2E-22 126.8 8.4 76 141-229 1-76 (101)
120 2db1_A Heterogeneous nuclear r 99.7 8.1E-18 2.8E-22 130.7 8.6 80 137-226 14-96 (118)
121 1wg5_A Heterogeneous nuclear r 99.7 2.1E-17 7.3E-22 125.2 10.7 81 137-227 12-93 (104)
122 2cpy_A RNA-binding protein 12; 99.7 7.5E-18 2.6E-22 129.8 8.1 81 137-227 12-93 (114)
123 2ki2_A SS-DNA binding protein 99.7 1.2E-18 4.2E-23 127.9 3.5 80 141-229 2-81 (90)
124 2krb_A Eukaryotic translation 99.7 3.6E-18 1.2E-22 123.5 5.8 73 140-222 1-80 (81)
125 2wbr_A GW182, gawky, LD47780P; 99.7 8.1E-18 2.8E-22 125.4 7.7 74 139-226 6-79 (89)
126 2i2y_A Fusion protein consists 99.7 1.4E-17 4.9E-22 133.7 9.8 80 137-229 70-149 (150)
127 1whx_A Hypothetical protein ri 99.7 1.1E-17 3.8E-22 128.6 8.7 76 138-227 8-83 (111)
128 3q2s_C Cleavage and polyadenyl 99.7 8.2E-18 2.8E-22 145.3 8.8 80 139-226 67-148 (229)
129 1sjr_A Polypyrimidine tract-bi 99.7 2E-17 7E-22 136.5 10.6 79 138-228 44-124 (164)
130 1x5p_A Negative elongation fac 99.7 7.2E-17 2.5E-21 120.4 12.3 77 137-229 12-88 (97)
131 1fjc_A Nucleolin RBD2, protein 99.7 1.6E-17 5.5E-22 123.3 8.5 80 137-229 13-92 (96)
132 3beg_B Splicing factor, argini 99.7 2.4E-17 8.2E-22 127.4 9.6 81 137-227 13-93 (115)
133 2lcw_A RNA-binding protein FUS 99.6 5.3E-19 1.8E-23 136.2 0.0 85 137-229 4-96 (116)
134 2hgl_A HNRPF protein, heteroge 99.7 1.6E-17 5.5E-22 133.0 8.5 80 137-226 41-123 (136)
135 1fj7_A Nucleolin RBD1, protein 99.7 2.8E-18 9.6E-23 128.7 3.5 83 137-229 14-96 (101)
136 2e5i_A Heterogeneous nuclear r 99.7 1E-16 3.4E-21 126.6 12.4 75 142-228 27-102 (124)
137 3zzy_A Polypyrimidine tract-bi 99.7 3.9E-17 1.3E-21 130.0 10.0 77 139-228 27-106 (130)
138 4f02_A Polyadenylate-binding p 99.7 4.5E-17 1.6E-21 137.8 10.9 84 137-228 12-95 (213)
139 1wg1_A KIAA1579 protein, homol 99.7 2.5E-17 8.4E-22 121.0 7.8 75 138-227 3-77 (88)
140 3egn_A RNA-binding protein 40; 99.7 2.8E-17 9.4E-22 131.0 8.4 82 137-229 42-131 (143)
141 2dnn_A RNA-binding protein 12; 99.7 4.3E-17 1.5E-21 125.7 8.4 78 138-226 14-91 (109)
142 2f3j_A RNA and export factor b 99.7 4.7E-17 1.6E-21 135.3 9.2 83 137-228 85-167 (177)
143 2lmi_A GRSF-1, G-rich sequence 99.7 2.1E-17 7.2E-22 125.9 6.4 81 137-227 8-91 (107)
144 1iqt_A AUF1, heterogeneous nuc 99.7 8.1E-18 2.8E-22 119.3 3.8 75 142-225 1-75 (75)
145 3md3_A Nuclear and cytoplasmic 99.7 2.1E-16 7.2E-21 126.2 12.2 82 137-226 84-165 (166)
146 2cq2_A Hypothetical protein LO 99.7 5.2E-17 1.8E-21 126.5 8.1 83 137-233 22-112 (114)
147 2e44_A Insulin-like growth fac 99.7 9.8E-17 3.4E-21 119.0 9.2 80 137-228 12-92 (96)
148 1fxl_A Paraneoplastic encephal 99.7 1.8E-16 6.2E-21 126.6 11.5 81 140-228 2-82 (167)
149 1b7f_A Protein (SXL-lethal pro 99.7 1.3E-16 4.5E-21 128.0 10.5 83 139-229 2-84 (168)
150 2xs2_A Deleted in azoospermia- 99.7 2.3E-17 8E-22 123.9 5.6 80 137-227 6-85 (102)
151 2qfj_A FBP-interacting repress 99.7 3E-16 1E-20 131.0 12.5 84 138-229 123-206 (216)
152 2hgn_A Heterogeneous nuclear r 99.7 1.7E-17 5.8E-22 133.4 4.3 83 137-230 43-125 (139)
153 2bz2_A Negative elongation fac 99.7 1.5E-16 5.3E-21 124.3 9.3 77 137-229 36-112 (121)
154 3tyt_A Heterogeneous nuclear r 99.7 2.1E-16 7.2E-21 134.0 10.7 78 138-228 2-80 (205)
155 3nmr_A Cugbp ELAV-like family 99.7 2E-16 6.7E-21 127.6 9.6 84 137-226 92-175 (175)
156 2g4b_A Splicing factor U2AF 65 99.7 2.4E-16 8.3E-21 127.1 9.8 81 138-226 92-172 (172)
157 3pgw_S U1-70K; protein-RNA com 99.7 2.7E-16 9.2E-21 147.7 11.2 83 137-227 99-181 (437)
158 2e5g_A U6 snRNA-specific termi 99.7 3.4E-16 1.2E-20 116.1 9.4 77 138-228 6-82 (94)
159 3pgw_A U1-A; protein-RNA compl 99.7 4.9E-16 1.7E-20 135.7 11.9 82 137-229 6-91 (282)
160 4f02_A Polyadenylate-binding p 99.7 3.1E-16 1.1E-20 132.6 10.2 79 139-227 102-180 (213)
161 2yh0_A Splicing factor U2AF 65 99.7 8.9E-16 3E-20 126.5 12.6 85 137-229 111-195 (198)
162 3md3_A Nuclear and cytoplasmic 99.7 3.7E-16 1.3E-20 124.7 9.9 80 141-229 1-80 (166)
163 3d2w_A TAR DNA-binding protein 99.7 2.7E-16 9.1E-21 116.3 8.4 74 137-227 8-83 (89)
164 1b7f_A Protein (SXL-lethal pro 99.6 1.3E-15 4.5E-20 122.1 12.4 81 137-225 86-168 (168)
165 2hgm_A HNRPF protein, heteroge 99.6 2.2E-16 7.6E-21 124.9 7.7 78 138-226 40-119 (126)
166 1l3k_A Heterogeneous nuclear r 99.6 4.5E-16 1.5E-20 128.1 9.7 84 136-228 9-92 (196)
167 2dha_A FLJ20171 protein; RRM d 99.6 1.6E-16 5.3E-21 125.1 6.4 79 138-226 21-103 (123)
168 1wf0_A TDP-43, TAR DNA-binding 99.6 1.5E-16 5.3E-21 116.4 5.9 77 138-229 3-79 (88)
169 1fxl_A Paraneoplastic encephal 99.6 1.2E-15 4.2E-20 121.8 11.2 82 138-225 86-167 (167)
170 2hzc_A Splicing factor U2AF 65 99.6 3.4E-16 1.2E-20 113.8 6.8 72 138-224 4-86 (87)
171 1l3k_A Heterogeneous nuclear r 99.6 1.1E-15 3.6E-20 125.8 10.5 84 137-229 101-184 (196)
172 3nmr_A Cugbp ELAV-like family 99.6 1.6E-15 5.6E-20 122.2 11.0 87 139-228 2-88 (175)
173 2diu_A KIAA0430 protein; struc 99.6 1.5E-15 5.3E-20 114.3 9.5 74 138-229 6-85 (96)
174 2dnl_A Cytoplasmic polyadenyla 99.6 5.5E-16 1.9E-20 119.3 7.3 67 138-205 6-72 (114)
175 2qfj_A FBP-interacting repress 99.6 1.2E-15 4.2E-20 127.3 10.0 83 138-228 26-108 (216)
176 3u1l_A PRE-mRNA-splicing facto 99.6 1.1E-15 3.6E-20 133.4 9.4 78 137-228 131-229 (240)
177 2cjk_A Nuclear polyadenylated 99.6 7.7E-16 2.6E-20 123.6 7.0 81 138-227 85-165 (167)
178 3pgw_A U1-A; protein-RNA compl 99.6 3.2E-15 1.1E-19 130.5 11.0 77 137-226 204-281 (282)
179 2adc_A Polypyrimidine tract-bi 99.6 4.6E-15 1.6E-19 126.7 10.4 79 137-228 31-110 (229)
180 2j8a_A Histone-lysine N-methyl 99.6 1.9E-15 6.7E-20 120.0 7.0 80 141-228 3-96 (136)
181 2pe8_A Splicing factor 45; RRM 99.6 9.2E-15 3.2E-19 111.8 10.4 83 138-227 6-93 (105)
182 2voo_A Lupus LA protein; RNA-b 99.6 6.2E-15 2.1E-19 124.0 9.8 81 139-229 108-188 (193)
183 2cjk_A Nuclear polyadenylated 99.6 3.4E-15 1.2E-19 119.8 7.4 79 139-227 2-80 (167)
184 1fje_B Nucleolin RBD12, protei 99.6 5.1E-15 1.7E-19 120.0 8.3 78 137-227 96-173 (175)
185 2adc_A Polypyrimidine tract-bi 99.6 9E-15 3.1E-19 124.9 9.9 78 138-228 149-228 (229)
186 1qm9_A Polypyrimidine tract-bi 99.6 1.1E-14 3.6E-19 120.7 9.8 78 138-228 118-197 (198)
187 3smz_A Protein raver-1, ribonu 99.5 2.1E-14 7.2E-19 125.5 11.2 83 137-228 181-264 (284)
188 1qm9_A Polypyrimidine tract-bi 99.5 6.2E-15 2.1E-19 122.2 7.1 76 140-228 3-79 (198)
189 3smz_A Protein raver-1, ribonu 99.5 2.3E-14 7.8E-19 125.2 10.9 84 138-229 93-176 (284)
190 3tyt_A Heterogeneous nuclear r 99.5 1.3E-14 4.6E-19 122.8 7.9 82 138-225 121-204 (205)
191 3sde_A Paraspeckle component 1 99.5 2.2E-14 7.7E-19 124.8 9.5 77 137-227 19-95 (261)
192 2dit_A HIV TAT specific factor 99.5 9.1E-14 3.1E-18 106.5 10.2 79 137-227 12-101 (112)
193 2g4b_A Splicing factor U2AF 65 99.5 2.4E-14 8.4E-19 115.3 7.3 75 139-228 3-88 (172)
194 1fje_B Nucleolin RBD12, protei 99.5 3.8E-15 1.3E-19 120.8 1.8 82 137-228 10-91 (175)
195 2yh0_A Splicing factor U2AF 65 99.5 3.2E-14 1.1E-18 117.1 7.3 75 139-228 3-88 (198)
196 2ghp_A U4/U6 snRNA-associated 99.5 3.5E-14 1.2E-18 124.5 7.7 83 137-227 207-290 (292)
197 3tht_A Alkylated DNA repair pr 99.5 1.1E-13 3.9E-18 126.3 9.9 84 134-226 12-97 (345)
198 3sde_A Paraspeckle component 1 99.5 2.5E-13 8.7E-18 118.1 11.0 80 139-227 95-178 (261)
199 2ghp_A U4/U6 snRNA-associated 99.5 1.1E-13 3.6E-18 121.4 7.9 82 139-229 116-198 (292)
200 3v4m_A Splicing factor U2AF 65 99.4 2E-13 6.8E-18 104.2 8.3 83 138-226 3-95 (105)
201 1jmt_A Splicing factor U2AF 35 99.4 2.9E-14 1E-18 108.6 3.1 72 145-225 20-103 (104)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 8.7E-13 3E-17 100.1 10.7 66 150-230 27-92 (100)
203 3ue2_A Poly(U)-binding-splicin 99.4 7E-13 2.4E-17 103.5 9.7 84 138-226 18-107 (118)
204 3s6e_A RNA-binding protein 39; 99.2 2.6E-11 8.8E-16 94.0 9.1 77 138-226 5-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 2.2E-10 7.4E-15 89.9 9.3 76 137-226 15-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 5.3E-10 1.8E-14 83.3 7.0 75 138-229 5-87 (91)
207 3dxb_A Thioredoxin N-terminall 98.8 1.5E-08 5.2E-13 85.6 9.4 70 152-226 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.7 6.6E-09 2.3E-13 77.8 3.8 71 138-225 13-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.3 1E-06 3.5E-11 67.6 6.8 72 138-223 19-95 (117)
210 1wey_A Calcipressin 1; structu 97.6 6.6E-05 2.2E-09 56.9 5.3 75 139-227 4-83 (104)
211 1uw4_A UPF3X; nonsense mediate 97.6 0.00064 2.2E-08 50.3 9.9 86 141-227 2-87 (91)
212 1whv_A Poly(A)-specific ribonu 97.5 0.0005 1.7E-08 51.5 8.7 57 138-206 14-70 (100)
213 3ctr_A Poly(A)-specific ribonu 96.7 0.0017 5.8E-08 48.7 4.6 54 141-206 7-60 (101)
214 2l08_A Regulator of nonsense t 96.7 0.0039 1.3E-07 46.6 6.5 88 139-227 8-95 (97)
215 2dhx_A Poly (ADP-ribose) polym 96.3 0.023 8E-07 42.8 8.7 67 139-222 7-78 (104)
216 1wwh_A Nucleoporin 35, nucleop 96.1 0.016 5.4E-07 44.8 7.0 65 138-213 22-86 (119)
217 2kn4_A Immunoglobulin G-bindin 95.5 0.011 3.9E-07 46.3 4.0 26 183-208 11-36 (158)
218 2i2y_A Fusion protein consists 95.0 0.0066 2.3E-07 47.5 1.3 40 182-227 10-50 (150)
219 3pq1_A Poly(A) RNA polymerase; 94.9 0.011 3.8E-07 55.7 2.7 55 139-202 52-106 (464)
220 3p3d_A Nucleoporin 53; structu 91.3 0.12 4E-06 40.6 2.8 78 141-225 8-96 (132)
221 3d45_A Poly(A)-specific ribonu 90.5 0.68 2.3E-05 43.8 7.9 56 139-206 439-494 (507)
222 2g0c_A ATP-dependent RNA helic 59.7 24 0.00082 23.7 5.8 68 142-226 2-75 (76)
223 4f25_A Polyadenylate-binding p 58.9 2.3 7.9E-05 31.2 0.4 19 138-156 95-113 (115)
224 4e8u_A Putative uncharacterize 25.3 1.3E+02 0.0045 24.1 5.7 55 142-202 14-80 (172)
225 3fry_A Probable copper-exporti 24.2 1.4E+02 0.0048 18.9 5.3 59 141-210 7-65 (73)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=146.12 Aligned_cols=81 Identities=23% Similarity=0.430 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
..+++|||+|||+++||++|+++|++||+|++|+|+.+ +..++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~--- 90 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD---KVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT--- 90 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC---SSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeec---CCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE---
Confidence 45689999999999999999999999999999999984 333699999999999999999999999999999998
Q ss_pred CceEEEeec
Q 026189 218 PTLKIQFAH 226 (242)
Q Consensus 218 ~~LrV~~ar 226 (242)
|+|+||+
T Consensus 91 --l~V~~Ak 97 (99)
T 4fxv_A 91 --IKVSYAR 97 (99)
T ss_dssp --CEEEECC
T ss_pred --EEEEEee
Confidence 9999997
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.9e-20 Score=135.20 Aligned_cols=85 Identities=22% Similarity=0.457 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
.++++|||+|||.++++++|+++|++||.|++|+++.+ +..++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 76 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKD---SDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP--- 76 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECC---SSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC---
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeec---CCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE---
Confidence 56789999999999999999999999999999999874 223589999999999999999999999999999998
Q ss_pred CceEEEeecCCCC
Q 026189 218 PTLKIQFAHFPFH 230 (242)
Q Consensus 218 ~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 77 --l~V~~a~~~~~ 87 (95)
T 2dnz_A 77 --MRVGHVTERLD 87 (95)
T ss_dssp --CEEEESSCCCC
T ss_pred --EEEEEcccccC
Confidence 99999986543
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=142.11 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
.+.++|||+|||++++|++|+++|++||.|++|+|+.+ +.+++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d---~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~--- 77 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLH---PRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI--- 77 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEC---CCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE---
Confidence 45789999999999999999999999999999999984 333699999999999999999999999999999998
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 78 --i~V~~a~~ 85 (110)
T 3s8s_A 78 --IHAQLDIK 85 (110)
T ss_dssp --CEEEECST
T ss_pred --EEEEECCC
Confidence 99999974
No 4
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=1.6e-19 Score=136.37 Aligned_cols=85 Identities=28% Similarity=0.377 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC---C
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD---K 213 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g---~ 213 (242)
..+.++|||+|||.++++++|+++|++||.|++|+|+.+. + ++++|||||+|.+.++|++|++.|+|..+.+ +
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP---D-GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS---S-SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C-CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3567899999999999999999999999999999999853 3 5899999999999999999999999999998 6
Q ss_pred CCCCCceEEEeecCCCC
Q 026189 214 KPDSPTLKIQFAHFPFH 230 (242)
Q Consensus 214 ~~~~~~LrV~~ar~~~~ 230 (242)
. |+|+|++....
T Consensus 88 ~-----l~V~~a~~~~~ 99 (105)
T 2dnh_A 88 S-----LVVKFADTDKE 99 (105)
T ss_dssp C-----CEEEESCSSCC
T ss_pred c-----EEEEECccCcc
Confidence 6 99999987554
No 5
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=136.09 Aligned_cols=85 Identities=27% Similarity=0.449 Sum_probs=77.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHH
Q 026189 134 PLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--------IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL 205 (242)
Q Consensus 134 ~~~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~--------vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L 205 (242)
+.+....++|||+|||.++++++|+++|++||.|.+ |+++.+ +..++++|||||+|.+.++|++|++.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~---~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD---RETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEEC---TTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEec---CCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 345677899999999999999999999999999999 999874 233689999999999999999999999
Q ss_pred CCceeCCCCCCCCceEEEeec
Q 026189 206 HGYKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 206 ~G~~i~g~~~~~~~LrV~~ar 226 (242)
+|..+.++. |+|+||+
T Consensus 84 ~g~~~~g~~-----l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGNP-----IKVSFAT 99 (99)
T ss_dssp TTCBSSSSB-----CEEEECC
T ss_pred CCCEeCCcE-----EEEEecC
Confidence 999999998 9999985
No 6
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=136.37 Aligned_cols=86 Identities=21% Similarity=0.411 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 86 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKD---KTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI-- 86 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEEC---SSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeec---CCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE--
Confidence 456789999999999999999999999999999999874 223689999999999999999999999999999998
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 87 ---l~v~~a~~~~~ 97 (103)
T 2cq0_A 87 ---LNVEWAKPSTN 97 (103)
T ss_dssp ---CEEEESSCCCC
T ss_pred ---EEEEECCCCCC
Confidence 99999986543
No 7
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=137.06 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
...+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +..++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 84 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPRE---PHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE- 84 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBC---SSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC-
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE-
Confidence 4567899999999999999999999999999999999874 233589999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCC
Q 026189 216 DSPTLKIQFAHFPFH 230 (242)
Q Consensus 216 ~~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 85 ----l~V~~a~~~~~ 95 (103)
T 2dnm_A 85 ----LRVQVARYGRR 95 (103)
T ss_dssp ----CEEEECSSCCS
T ss_pred ----EEEEECCcCCC
Confidence 99999986544
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=1.2e-19 Score=139.47 Aligned_cols=86 Identities=23% Similarity=0.453 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++++++|+++|++||.|++|+|+.+. ..++++|||||+|.+.++|++|++.|++..|.++.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 96 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK---QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR-- 96 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS---SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE--
Confidence 4567899999999999999999999999999999998842 23689999999999999999999999999999998
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 97 ---l~V~~a~~~~~ 107 (115)
T 2cpz_A 97 ---LKVQLKRSKND 107 (115)
T ss_dssp ---CEEECCCCSCC
T ss_pred ---EEEEEcCCCCc
Confidence 99999986443
No 9
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=136.26 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.....++|||+|||+++++++|+++|++||.|++|+++.+ +..++++|||||+|.+.++|++|++.|++..|.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKD---RVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP- 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBC---SSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB-
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE-
Confidence 3567789999999999999999999999999999999874 223689999999999999999999999999999988
Q ss_pred CCCceEEEeecCCCC
Q 026189 216 DSPTLKIQFAHFPFH 230 (242)
Q Consensus 216 ~~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 87 ----l~v~~a~~~~~ 97 (105)
T 1x5u_A 87 ----IRVNKASAHNK 97 (105)
T ss_dssp ----CEEEETTTTSC
T ss_pred ----EEEEECCCCCc
Confidence 99999986543
No 10
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=133.97 Aligned_cols=84 Identities=20% Similarity=0.449 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++++++|+++|++||.|++|+++.+. + ++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 87 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR---A-GKPKGLAYVEYENESQASQAVMKMDGMTIKENI-- 87 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---T-SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC---C-CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE--
Confidence 4567899999999999999999999999999999999853 3 589999999999999999999999999999988
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 88 ---l~v~~a~~~~ 97 (100)
T 2do4_A 88 ---IKVAISNSGP 97 (100)
T ss_dssp ---EEEEECCCCS
T ss_pred ---EEEEECCCCC
Confidence 9999998654
No 11
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=133.55 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++ |++..+.++.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~-- 80 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYD---AEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK-- 80 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCC---TTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE--
Confidence 467789999999999999999999999999999999874 2235889999999999999999998 9999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 81 ---l~V~~a~~~~~ 91 (99)
T 2dgs_A 81 ---VEVKRAEPRDS 91 (99)
T ss_dssp ---CEEEECCCCCC
T ss_pred ---EEEEECCCCcc
Confidence 99999986543
No 12
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.9e-19 Score=138.87 Aligned_cols=83 Identities=28% Similarity=0.513 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
...+.++|||+|||+++++++|+++|++||+|++|+|+.+ +..++++|||||+|.+.++|++|++.|||..|.++.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFID---KQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR- 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCC---SSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE-
Confidence 3456789999999999999999999999999999999874 223588999999999999999999999999999998
Q ss_pred CCCceEEEeec
Q 026189 216 DSPTLKIQFAH 226 (242)
Q Consensus 216 ~~~~LrV~~ar 226 (242)
|+|+|+|
T Consensus 112 ----l~V~~ak 118 (118)
T 2khc_A 112 ----LKVQLKK 118 (118)
T ss_dssp ----CCEEEC-
T ss_pred ----EEEEecC
Confidence 9999986
No 13
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=4.1e-19 Score=136.34 Aligned_cols=86 Identities=19% Similarity=0.292 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 86 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD---MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ-- 86 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEc---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE--
Confidence 456789999999999999999999999999999999874 223689999999999999999999999999999998
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 87 ---l~V~~a~~~~~ 97 (115)
T 2dgo_A 87 ---IRTNWATRKPP 97 (115)
T ss_dssp ---CEEEESSCCCC
T ss_pred ---EEEEEccCCCC
Confidence 99999986543
No 14
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=136.96 Aligned_cols=85 Identities=24% Similarity=0.486 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++|+++|+++|++||.|++|+|..+ ++++|||||+|.+.++|++|++.||+..|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 90 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR-- 90 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS------SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE--
Confidence 456789999999999999999999999999999999542 357889999999999999999999999999988
Q ss_pred CCceEEEeecCCCCCC
Q 026189 217 SPTLKIQFAHFPFHLP 232 (242)
Q Consensus 217 ~~~LrV~~ar~~~~~~ 232 (242)
|+|+|++...+.+
T Consensus 91 ---l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 91 ---LRVEFPRSGRGTG 103 (109)
T ss_dssp ---CEEECCCCCCCCC
T ss_pred ---EEEEEcccCCCCC
Confidence 9999998765433
No 15
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=139.75 Aligned_cols=85 Identities=21% Similarity=0.412 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.+..++|||+|||.++++++|+++|++||.|++|+|+.+. + ++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~-g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~-- 77 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR---T-SKSRGFAFITFENPADAKNAAKDMNGKSLHGKA-- 77 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST---T-TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC---C-CCcccEEEEEECCHHHHHHHHHHhCCCEECCEE--
Confidence 4567899999999999999999999999999999998753 2 589999999999999999999999999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++.+..
T Consensus 78 ---l~V~~a~~~~~ 88 (116)
T 2fy1_A 78 ---IKVEQAKKPSF 88 (116)
T ss_dssp ---CEEEECCCSSC
T ss_pred ---EEEEECCCCCC
Confidence 99999987543
No 16
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=1.1e-19 Score=140.43 Aligned_cols=80 Identities=19% Similarity=0.332 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
.+.+|||+|||+++||++|+++|++||.|++|+|+.++ +.++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~---- 74 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK---- 74 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE----
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-----CCCCceEEEEECCHHHHHHHHHHcCCCEECCEE----
Confidence 45789999999999999999999999999999999752 357899999999999999999999999999998
Q ss_pred ceEEEeecCC
Q 026189 219 TLKIQFAHFP 228 (242)
Q Consensus 219 ~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 75 -i~V~~a~~~ 83 (115)
T 4f25_A 75 -VFVGRFKSR 83 (115)
T ss_dssp -CEEEESSCC
T ss_pred -EEEEECCCc
Confidence 999999753
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=131.79 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
.+.++|||+|||.++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 77 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKD---MATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ--- 77 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE---
Confidence 46789999999999999999999999999999999874 223689999999999999999999999999999998
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 78 --l~v~~a~~ 85 (87)
T 3bs9_A 78 --IRTNWATR 85 (87)
T ss_dssp --CEEEEEC-
T ss_pred --EEEEecCC
Confidence 99999974
No 18
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=3.3e-19 Score=141.24 Aligned_cols=90 Identities=20% Similarity=0.371 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.....++|||+|||.++++++|+++|++||.|++|+|+.+. .+++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR---ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR- 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET---TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE-
Confidence 35677899999999999999999999999999999998852 23589999999999999999999999999999988
Q ss_pred CCCceEEEeecCCCCCCC
Q 026189 216 DSPTLKIQFAHFPFHLPS 233 (242)
Q Consensus 216 ~~~~LrV~~ar~~~~~~~ 233 (242)
|+|+|++.....++
T Consensus 114 ----l~v~~a~~~~~~~~ 127 (139)
T 1u6f_A 114 ----LKVALAASGHQRPG 127 (139)
T ss_dssp ----EEEEESSCCCCCCC
T ss_pred ----EEEEECCCCCCCCC
Confidence 99999987554443
No 19
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=133.33 Aligned_cols=83 Identities=18% Similarity=0.318 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..++++|||+|||.++++++|+++|++||.|++|+++.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 86 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD---QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR-- 86 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEEC---SSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEc---CCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE--
Confidence 466789999999999999999999999999999999874 233589999999999999999999999999999998
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 87 ---l~v~~a~~ 94 (95)
T 2cqc_A 87 ---IRVSGPSS 94 (95)
T ss_dssp ---EEEECCSC
T ss_pred ---EEEEecCC
Confidence 99999974
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=135.01 Aligned_cols=86 Identities=24% Similarity=0.421 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++.||+..|.++.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 83 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKD---RETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ-- 83 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCC---SSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 456789999999999999999999999999999999874 223588999999999999999999999999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 84 ---l~v~~a~~~~~ 94 (102)
T 1x5s_A 84 ---IRVDQAGKSSD 94 (102)
T ss_dssp ---CEEEEEECCCC
T ss_pred ---EEEEECCCCCC
Confidence 99999987544
No 21
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=2.5e-19 Score=132.04 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++++++|+++|++||.|++|+++.+ + ++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~----~-g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~-- 77 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME----N-GKSKGCGVVKFESPEVAERACRMMNGMKLSGRE-- 77 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES----S-SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc----C-CCcceEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 467789999999999999999999999999999999862 2 589999999999999999999999999999998
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 78 ---l~v~~a~~~~~ 88 (92)
T 2dgv_A 78 ---IDVRIDRNASG 88 (92)
T ss_dssp ---CCCEECSCCSS
T ss_pred ---EEEEEcCCCCC
Confidence 99999987654
No 22
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=133.16 Aligned_cols=82 Identities=15% Similarity=0.303 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.++.++|||+|||.++++++|+++|++||.|++|+++.+ +.+++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 87 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKD---KDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV-- 87 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCC---SSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE--
Confidence 456789999999999999999999999999999999873 333588999999999999999999999999999998
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
|+|+|||
T Consensus 88 ---l~v~~ak 94 (94)
T 2e5h_A 88 ---IKASIAI 94 (94)
T ss_dssp ---EEEEECC
T ss_pred ---EEEEecC
Confidence 9999986
No 23
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.6e-19 Score=133.05 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ + ++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~----~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 84 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME----G-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP-- 84 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC----S-SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----C-CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE--
Confidence 457789999999999999999999999999999999874 2 589999999999999999999999999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 85 ---l~V~~a~~~~~ 95 (103)
T 2d9p_A 85 ---LYVALAQRKEE 95 (103)
T ss_dssp ---CEEEECSSCCC
T ss_pred ---EEEEEeccccc
Confidence 99999986543
No 24
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=135.16 Aligned_cols=87 Identities=13% Similarity=0.248 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREI-RVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~v-rlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.++++|||+|||.++++++|+++|++||.|.+| +|+.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 77 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD---PDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP-- 77 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCC---TTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEc---CCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE--
Confidence 457899999999999999999999999999999 88763 223589999999999999999999999999999988
Q ss_pred CCceEEEeecCCCCCC
Q 026189 217 SPTLKIQFAHFPFHLP 232 (242)
Q Consensus 217 ~~~LrV~~ar~~~~~~ 232 (242)
|+|+|++......
T Consensus 78 ---l~v~~a~~~~~~~ 90 (96)
T 1x5t_A 78 ---ITVSYAFKKDSKG 90 (96)
T ss_dssp ---CEEEESCCCCCCC
T ss_pred ---EEEEEecccCCCC
Confidence 9999998755433
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.2e-19 Score=131.70 Aligned_cols=82 Identities=20% Similarity=0.385 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++++++|+++|++||.|.+|+++.+. ..++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 78 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY---ETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-- 78 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECC---CCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 4567899999999999999999999999999999998742 22589999999999999999999999999999988
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
|+|+|||
T Consensus 79 ---l~v~~ak 85 (85)
T 3mdf_A 79 ---IRVNLAK 85 (85)
T ss_dssp ---CEEEECC
T ss_pred ---EEEEEcC
Confidence 9999986
No 26
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=133.91 Aligned_cols=85 Identities=27% Similarity=0.448 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.....++|||+|||+++++++|+++|++||.|++|+|+.+. ..++|||||+|.+.++|++|++.|++..|.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 84 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH-----TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE- 84 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC-----CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE-
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC-----CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe-
Confidence 35677899999999999999999999999999999998742 236789999999999999999999999999988
Q ss_pred CCCceEEEeecCCCC
Q 026189 216 DSPTLKIQFAHFPFH 230 (242)
Q Consensus 216 ~~~~LrV~~ar~~~~ 230 (242)
|+|+|++.+..
T Consensus 85 ----l~V~~a~~~~~ 95 (103)
T 2cqi_A 85 ----VKVNWATTPSS 95 (103)
T ss_dssp ----EEEEECCCTTC
T ss_pred ----EEEEECCCCcc
Confidence 99999987554
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.3e-19 Score=133.74 Aligned_cols=87 Identities=24% Similarity=0.404 Sum_probs=77.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHH-CCceeCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL-HGYKFDDKK 214 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L-~G~~i~g~~ 214 (242)
.....++|||+|||+++++++|+++|++||.|++|+|+.+. +..++++|||||+|.+.++|++|++.| ++..|.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM--TGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCC--SSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCC--CCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 35677899999999999999999999999999999997631 223688999999999999999999999 999999988
Q ss_pred CCCCceEEEeecCCC
Q 026189 215 PDSPTLKIQFAHFPF 229 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 89 -----l~v~~a~~~~ 98 (107)
T 2cph_A 89 -----LVLEWADSEV 98 (107)
T ss_dssp -----CEEEECCCCC
T ss_pred -----EEEEeCCCCC
Confidence 9999998644
No 28
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=3.1e-19 Score=135.01 Aligned_cols=87 Identities=21% Similarity=0.309 Sum_probs=77.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCcee---CC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKF---DD 212 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i---~g 212 (242)
.....++|||+|||.++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++.|++..+ .+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKD---RFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCC---SSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec---CCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 3567789999999999999999999999999999999873 23358999999999999999999999999987 77
Q ss_pred CCCCCCceEEEeecCCCC
Q 026189 213 KKPDSPTLKIQFAHFPFH 230 (242)
Q Consensus 213 ~~~~~~~LrV~~ar~~~~ 230 (242)
+. |+|+|++...+
T Consensus 86 ~~-----l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RP-----IQVKPADSESR 98 (106)
T ss_dssp SC-----CEEEECCCCSC
T ss_pred ce-----EEEEECCcccc
Confidence 77 99999987554
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=8e-20 Score=137.67 Aligned_cols=82 Identities=16% Similarity=0.338 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCC--eEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCc----eeC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVG--YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY----KFD 211 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~--i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~----~i~ 211 (242)
..=+||||+|||+++|+++|+++|++||. +.+|+++.+ +.+++++|||||+|.+.++|++|++.|||. .|+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d---~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKD---KQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCC---SSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEec---CCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 45579999999999999999999999995 678988874 333699999999999999999999999997 588
Q ss_pred CCCCCCCceEEEeecC
Q 026189 212 DKKPDSPTLKIQFAHF 227 (242)
Q Consensus 212 g~~~~~~~LrV~~ar~ 227 (242)
|++ |+|+||++
T Consensus 84 Gr~-----i~V~~Aks 94 (95)
T 2lkz_A 84 GKT-----IGVDFAKS 94 (95)
T ss_dssp TEE-----EEEEECCC
T ss_pred CEE-----EEEEEccC
Confidence 988 99999985
No 30
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=136.29 Aligned_cols=83 Identities=24% Similarity=0.320 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++.|++ .|.++.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~-- 87 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITD---RQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK-- 87 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCC---SSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEc---CCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE--
Confidence 566789999999999999999999999999999999873 23358999999999999999999999998 899988
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 88 ---l~V~~a~~~ 96 (116)
T 2cqd_A 88 ---ANVNLAYLG 96 (116)
T ss_dssp ---CEEEESTTT
T ss_pred ---EEEEEcccC
Confidence 999999753
No 31
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=5e-19 Score=127.82 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCc
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 219 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~ 219 (242)
+.+|||+|||.++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~---~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~----- 72 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD---MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP----- 72 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEEC---TTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE-----
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEc---CCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE-----
Confidence 368999999999999999999999999999999874 223689999999999999999999999999999988
Q ss_pred eEEEeecC
Q 026189 220 LKIQFAHF 227 (242)
Q Consensus 220 LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 73 l~v~~a~~ 80 (83)
T 3md1_A 73 LRINWAAK 80 (83)
T ss_dssp CEEEECCC
T ss_pred EEEEecCc
Confidence 99999975
No 32
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=7.6e-19 Score=134.53 Aligned_cols=87 Identities=21% Similarity=0.418 Sum_probs=78.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 134 PLKKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 134 ~~~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
+....+.++|||+|||.++++++|+++|++||.|.+|+++.+. ..++++|||||+|.+.++|++|++.|+|..+.++
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS---ETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET---TTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3345677899999999999999999999999999999998742 2368999999999999999999999999999999
Q ss_pred CCCCCceEEEeecCC
Q 026189 214 KPDSPTLKIQFAHFP 228 (242)
Q Consensus 214 ~~~~~~LrV~~ar~~ 228 (242)
. |+|+|++..
T Consensus 97 ~-----l~V~~a~~k 106 (108)
T 2jrs_A 97 P-----MKVGHVTER 106 (108)
T ss_dssp C-----CEEECSCSS
T ss_pred E-----EEEEEcccC
Confidence 8 999999753
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=132.84 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 79 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPID---SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM-- 79 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCC---TTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEec---CCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 356789999999999999999999999999999999874 223589999999999999999999999999999988
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 80 ---l~V~~a~~~~ 89 (99)
T 1whw_A 80 ---LHVLPSTIKK 89 (99)
T ss_dssp ---EEEEECCCCS
T ss_pred ---EEEEEcCCCc
Confidence 9999998654
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=132.97 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
.++++|||+|||+++++++|+++|++||.|++|+|+.+......++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK--- 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE---
Confidence 46789999999999999999999999999999999875331112388999999999999999999999999999998
Q ss_pred CceEEEeecCCCC
Q 026189 218 PTLKIQFAHFPFH 230 (242)
Q Consensus 218 ~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 80 --l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 --LEVRISERATK 90 (98)
T ss_dssp --CEEECSSCSSC
T ss_pred --EEEEEccCCCC
Confidence 99999986543
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=134.17 Aligned_cols=86 Identities=20% Similarity=0.355 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC------Cce
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH------GYK 209 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~------G~~ 209 (242)
...+.++|||+|||+++++++|+++|++||.|.+|+|+.+ +..++++|||||+|.+.++|++|++.|+ +..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLH---PDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC---SSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 3567789999999999999999999999999999999874 2235889999999999999999999999 999
Q ss_pred eCCCCCCCCceEEEeecCCC
Q 026189 210 FDDKKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 210 i~g~~~~~~~LrV~~ar~~~ 229 (242)
|.++. |+|+|++...
T Consensus 88 ~~g~~-----l~v~~a~~~~ 102 (111)
T 1x4h_A 88 LDGRQ-----LKVDLAVTRD 102 (111)
T ss_dssp SSSCE-----EEEECCCCCC
T ss_pred EcCEE-----EEEEECCCCc
Confidence 99988 9999998643
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.9e-19 Score=133.17 Aligned_cols=83 Identities=19% Similarity=0.367 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
++++|||+|||.++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~---- 73 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFD---PQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF---- 73 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC---TTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE----
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE----
Confidence 4689999999999999999999999999999999874 233588999999999999999999999999999988
Q ss_pred ceEEEeecCCC
Q 026189 219 TLKIQFAHFPF 229 (242)
Q Consensus 219 ~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 74 -l~V~~a~~~~ 83 (96)
T 2x1f_A 74 -LKCGYSSNSD 83 (96)
T ss_dssp -CEEEECSCSS
T ss_pred -EEEEEcCCCC
Confidence 9999998643
No 37
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=133.21 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++++++|+++|++||+|++|+|+.+. . ++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~---~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 86 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR---E-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP-- 86 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT---T-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC---C-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE--
Confidence 4567899999999999999999999999999999998843 3 589999999999999999999999999999988
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 87 ---l~V~~a~~ 94 (95)
T 2ywk_A 87 ---INVSGPSS 94 (95)
T ss_dssp ---CEEECCCC
T ss_pred ---EEEEEcCC
Confidence 99999975
No 38
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=138.27 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=72.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC-CceeCCCCCCC
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH-GYKFDDKKPDS 217 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG-~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~-G~~i~g~~~~~ 217 (242)
+++|||+|||+++||++|+++|++|| .|++|+|+.+ +.+++++|||||+|.+.++|++|++.++ +..+.|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d---~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~--- 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRN---KSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK--- 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSC---SSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE---
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEec---CCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE---
Confidence 57999999999999999999999999 8999999873 3336899999999999999999999875 56799988
Q ss_pred CceEEEeecCC
Q 026189 218 PTLKIQFAHFP 228 (242)
Q Consensus 218 ~~LrV~~ar~~ 228 (242)
|+|+||+..
T Consensus 75 --i~V~~a~~~ 83 (91)
T 2lxi_A 75 --VSMHYSDPK 83 (91)
T ss_dssp --EEEECCCSC
T ss_pred --EEEEEcCCC
Confidence 999999854
No 39
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=133.81 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 83 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD---YETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-- 83 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCC---SSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEec---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 456789999999999999999999999999999999874 223588999999999999999999999999999998
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 84 ---l~V~~a~~~~~ 94 (102)
T 2cqb_A 84 ---IRVNLAKPMRI 94 (102)
T ss_dssp ---EEEEECCCCCC
T ss_pred ---EEEEeCCCCCC
Confidence 99999986543
No 40
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=7.8e-19 Score=132.40 Aligned_cols=85 Identities=20% Similarity=0.464 Sum_probs=76.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
+..+.++|||+|||+++++++|+++|++|| |++|+|+.+ +..++++|||||+|.+.++|++|+ .|+|..|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~- 84 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRD---KDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS- 84 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEEC---SSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE-
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeec---CCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE-
Confidence 456778999999999999999999999996 999999884 233689999999999999999999 99999999998
Q ss_pred CCCceEEEeecCCCC
Q 026189 216 DSPTLKIQFAHFPFH 230 (242)
Q Consensus 216 ~~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 85 ----l~V~~a~~~~~ 95 (103)
T 2dng_A 85 ----LRVDIAEGRKQ 95 (103)
T ss_dssp ----CEEEECCCCCC
T ss_pred ----EEEEEecCCCC
Confidence 99999986543
No 41
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=131.06 Aligned_cols=85 Identities=21% Similarity=0.356 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.....++|||+|||+++++++|+++|++||.|++|+|+.+.. .++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 84 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-----GSKGFGFVTFENSADADRAREKLHGTVVEGRK- 84 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-----TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-----CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE-
Confidence 356678999999999999999999999999999999987422 37889999999999999999999999999998
Q ss_pred CCCceEEEeecCCCC
Q 026189 216 DSPTLKIQFAHFPFH 230 (242)
Q Consensus 216 ~~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 85 ----l~v~~a~~~~~ 95 (103)
T 2cq3_A 85 ----IEVNNATARVM 95 (103)
T ss_dssp ----CEEEECCSSCC
T ss_pred ----EEEEEcccCCC
Confidence 99999986543
No 42
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=133.60 Aligned_cols=83 Identities=12% Similarity=0.175 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||.++++++|+++|++||.|++|+|+.++ + ++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~---~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 85 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK---D-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP-- 85 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT---T-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE--
Confidence 4567899999999999999999999999999999998853 3 589999999999999999999999999999988
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 86 ---l~v~~a~~~ 94 (114)
T 2do0_A 86 ---MHVKMDERA 94 (114)
T ss_dssp ---CEEEECSCC
T ss_pred ---EEEEEcccC
Confidence 999999753
No 43
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=5.4e-19 Score=142.92 Aligned_cols=86 Identities=22% Similarity=0.284 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++|+++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++.|++..|.++.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-- 110 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLD---KMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI-- 110 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 456789999999999999999999999999999999884 333589999999999999999999999999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 111 ---l~V~~a~~~~~ 121 (156)
T 1h2v_Z 111 ---IRTDWDAGFKE 121 (156)
T ss_dssp ---CEEEEESCCCT
T ss_pred ---EEEEECCCCCC
Confidence 99999986443
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=134.20 Aligned_cols=84 Identities=20% Similarity=0.352 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..++++|||+|||.++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 94 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD---RRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP-- 94 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEec---CCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE--
Confidence 456789999999999999999999999999999999874 233689999999999999999999999999999988
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 95 ---l~V~~a~~~ 103 (106)
T 1p27_B 95 ---ISVDWCFVR 103 (106)
T ss_dssp ---CEEEESEES
T ss_pred ---EEEEeecCC
Confidence 999999753
No 45
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=5.4e-19 Score=133.88 Aligned_cols=82 Identities=21% Similarity=0.300 Sum_probs=75.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
...+.++|||+|||+++++++|+++|++||.|++|+|+.+. + ++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 99 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR---S-GRSLGTADVHFERKADALKAMKQYNGVPLDGRP- 99 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT---T-SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE-
Confidence 35677899999999999999999999999999999999853 3 589999999999999999999999999999988
Q ss_pred CCCceEEEeec
Q 026189 216 DSPTLKIQFAH 226 (242)
Q Consensus 216 ~~~~LrV~~ar 226 (242)
|+|+|+.
T Consensus 100 ----l~V~~a~ 106 (107)
T 3ulh_A 100 ----MNIQLVT 106 (107)
T ss_dssp ----CEEEEEC
T ss_pred ----EEEEEeC
Confidence 9999986
No 46
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=3.2e-19 Score=139.05 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=76.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
....+++|||+|||+++|+++|+++|++||.|.+|+|+.+ +..++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLD---RRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP- 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBC---TTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE-
Confidence 3456789999999999999999999999999999999874 223688999999999999999999999999999988
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 94 ----l~v~~a~~~ 102 (126)
T 3ex7_B 94 ----ISVDWCFVR 102 (126)
T ss_dssp ----CEEEESEES
T ss_pred ----EEEEEecCC
Confidence 999999753
No 47
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=129.81 Aligned_cols=84 Identities=15% Similarity=0.321 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..++|||+|||.++++++|+++|++||.|.+|+++.+.. ++++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~---- 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM--HPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE---- 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT--EEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC--CCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE----
Confidence 468999999999999999999999999999999987532 22348899999999999999999999999999998
Q ss_pred ceEEEeecCCC
Q 026189 219 TLKIQFAHFPF 229 (242)
Q Consensus 219 ~LrV~~ar~~~ 229 (242)
|+|+|++.+.
T Consensus 77 -l~v~~a~~~~ 86 (88)
T 4a8x_A 77 -ITATAVLAPW 86 (88)
T ss_dssp -CEEEEECCCC
T ss_pred -EEEEECCCCC
Confidence 9999998654
No 48
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.9e-19 Score=132.32 Aligned_cols=85 Identities=20% Similarity=0.373 Sum_probs=75.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
+..+.++|||+|||+++++++|+++|++|| |++|+|+.+. .+.++++|||||+|.+.++|++|+ .|++..|.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~--~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~- 85 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP--SNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR- 85 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS--SCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE-
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCC--CCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE-
Confidence 345678999999999999999999999999 9999998742 221588999999999999999999 99999999998
Q ss_pred CCCceEEEeecCCC
Q 026189 216 DSPTLKIQFAHFPF 229 (242)
Q Consensus 216 ~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 86 ----l~V~~a~~~~ 95 (104)
T 1wi8_A 86 ----IRVDVADQAQ 95 (104)
T ss_dssp ----CEEEECCCCC
T ss_pred ----EEEEEccCCC
Confidence 9999998654
No 49
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.2e-19 Score=134.26 Aligned_cols=86 Identities=20% Similarity=0.361 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeE--------EEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCc
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYR--------EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 208 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~--------~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~ 208 (242)
....++|||+|||.++++++|+++|++||.|. .|+|+.+ +..++++|||||+|.+.++|++|++.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLD---KETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBC---TTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEe---CCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 45778999999999999999999999999998 6888873 223689999999999999999999999999
Q ss_pred eeCCCCCCCCceEEEeecCCCC
Q 026189 209 KFDDKKPDSPTLKIQFAHFPFH 230 (242)
Q Consensus 209 ~i~g~~~~~~~LrV~~ar~~~~ 230 (242)
.|.++. |+|+|++....
T Consensus 89 ~~~g~~-----l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSK-----LKVSLARKKPP 105 (113)
T ss_dssp EETTEE-----CEEECSSCCCC
T ss_pred ccCCCE-----EEEEECCCCCC
Confidence 999988 99999986543
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=1.2e-19 Score=134.01 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=69.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFV--GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG--~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
.+|||+|||+++|+++|+++|++|| .|.+|+++.+ +..++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~---~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~---- 74 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN---RANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN---- 74 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEEC---TTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC----
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEec---CCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE----
Confidence 4799999999999999999999999 9999999984 333699999999999999999999999999999998
Q ss_pred ceEEEeecCCC
Q 026189 219 TLKIQFAHFPF 229 (242)
Q Consensus 219 ~LrV~~ar~~~ 229 (242)
|+|+++..+.
T Consensus 75 -i~V~~~~~~~ 84 (90)
T 3p5t_L 75 -PVVTPSNKLE 84 (90)
T ss_dssp -CEECCC----
T ss_pred -EEEEECCCCc
Confidence 9999998654
No 51
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-19 Score=132.78 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.+..++|||+|||+++++++|+++|++||.|.+++++.+ +..++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-- 86 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKY---NEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK-- 86 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEE---CSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEE---CCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE--
Confidence 355689999999999999999999999999988877764 223589999999999999999999999999999998
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++.+.
T Consensus 87 ---l~V~~a~~~~ 96 (98)
T 2cqp_A 87 ---VKLVLGSGPS 96 (98)
T ss_dssp ---CEEEESSCSS
T ss_pred ---EEEEEcCCCC
Confidence 9999998653
No 52
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8e-19 Score=131.13 Aligned_cols=89 Identities=19% Similarity=0.338 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeE-EEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYR-EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~-~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
...+++|||+|||+++++++|+++|++||.|+ +|+++.+ +..++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 81 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRN---RLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT- 81 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEEC---SSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS-
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeec---CCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC-
Confidence 45679999999999999999999999999999 9999884 223689999999999999999999999999999874
Q ss_pred CCCceEEEeecCCC
Q 026189 216 DSPTLKIQFAHFPF 229 (242)
Q Consensus 216 ~~~~LrV~~ar~~~ 229 (242)
-...|+|+|++...
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 11228999998654
No 53
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-19 Score=131.53 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..++++|||+|||+++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 76 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILD---KTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM-- 76 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECC---SSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE--
Confidence 356789999999999999999999999999999999874 223588999999999999999999999999999988
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+++|+++
T Consensus 77 ---~~~~~~~s 84 (85)
T 1x4e_A 77 ---AKQSGPSS 84 (85)
T ss_dssp ---CCSSCCCC
T ss_pred ---EeecCCCC
Confidence 88887653
No 54
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=4.8e-19 Score=134.92 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||.++++++|+++|++||.|++|+++.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-- 97 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD---RRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT-- 97 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBC---TTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec---CCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE--
Confidence 456789999999999999999999999999999999773 223689999999999999999999999999999988
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 98 ---l~V~~a~~~ 106 (110)
T 1oo0_B 98 ---IQVDWCFVK 106 (110)
T ss_dssp ---CEEEESEES
T ss_pred ---EEEEEcccC
Confidence 999999854
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=131.89 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcC-CCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCce-eCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRP-FVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYK-FDDKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~-fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~-i~g~~ 214 (242)
..+.++|||+|||+++|+++|+++|++ ||.|.+|+|+.+. + ++++|||||+|.+.++|++|++.|++.. +.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~---~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ---T-GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT---T-CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC---C-CCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 466789999999999999999999999 9999999999853 3 5899999999999999999999999999 99988
Q ss_pred CCCCceEEEeecCCC
Q 026189 215 PDSPTLKIQFAHFPF 229 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 82 -----l~v~~a~~~~ 91 (104)
T 2dhg_A 82 -----VRLSVAIPKA 91 (104)
T ss_dssp -----CCCCBCCCCC
T ss_pred -----EEEEEccCCC
Confidence 9999997543
No 56
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=132.82 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC----
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD---- 212 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g---- 212 (242)
....++|||+|||+++++++|+++|++||+|++|+|+.+ |||||+|.+.++|++|++.|||..|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 456789999999999999999999999999999999752 599999999999999999999999999
Q ss_pred -CCCCCCceEEEeecCCCC
Q 026189 213 -KKPDSPTLKIQFAHFPFH 230 (242)
Q Consensus 213 -~~~~~~~LrV~~ar~~~~ 230 (242)
+. |+|+|++...+
T Consensus 82 ~~~-----i~V~~a~~~~~ 95 (108)
T 1x4c_A 82 TAY-----IRVKVDGPRSP 95 (108)
T ss_dssp EEE-----EEEEESSCCSC
T ss_pred ceE-----EEEEeCCCCCC
Confidence 66 99999986544
No 57
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=8.8e-19 Score=138.55 Aligned_cols=85 Identities=19% Similarity=0.359 Sum_probs=77.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
..+++++|||+|||.++++++|+++|++||+|++|+|+.+ +..++++|||||+|.+.++|++|++.|+|..|.+++
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~- 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYD---QQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR- 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECC---SSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE-
Confidence 3567789999999999999999999999999999999874 223588999999999999999999999999999998
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 118 ----l~V~~a~~~ 126 (129)
T 2kxn_B 118 ----IRVDFSITK 126 (129)
T ss_dssp ----CEESCCSSS
T ss_pred ----EEEEEecCC
Confidence 999999854
No 58
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=139.97 Aligned_cols=86 Identities=15% Similarity=0.291 Sum_probs=76.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE--EEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCc----e
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY----K 209 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~--vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~----~ 209 (242)
....+++|||+|||+++||++|+++|++||.|.. |+|+.+ +..++++|||||+|.+. +|++|++.|+|. .
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d---~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKD---KQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBC---SSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEc---CCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3456789999999999999999999999999977 999874 32369999999999999 999999999999 9
Q ss_pred eCCCCCCCCceEEEeecCCCC
Q 026189 210 FDDKKPDSPTLKIQFAHFPFH 230 (242)
Q Consensus 210 i~g~~~~~~~LrV~~ar~~~~ 230 (242)
+.++. |+|+|++...+
T Consensus 95 ~~gr~-----l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKT-----INVEFAKGSKR 110 (131)
T ss_dssp GGGCC-----CCCEECCCSCC
T ss_pred CCCEE-----EEEEECCCCCC
Confidence 99998 99999986544
No 59
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=3.1e-19 Score=134.65 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC
Q 026189 138 GESNLLFVDGLPT------DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 211 (242)
Q Consensus 138 ~~~~tLfVgnLp~------~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~ 211 (242)
..+++|||+|||. ++++++|+++|++||.|.+|+|+.+ +..++++|||||+|.+.++|++|++.|||..+.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d---~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPID---EATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEE---TTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEc---CCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 3468999999999 9999999999999999999999874 233599999999999999999999999999999
Q ss_pred C-CCCCCCceEEEeecC
Q 026189 212 D-KKPDSPTLKIQFAHF 227 (242)
Q Consensus 212 g-~~~~~~~LrV~~ar~ 227 (242)
+ +. |+|+|++.
T Consensus 81 g~r~-----l~V~~a~~ 92 (100)
T 3ns6_A 81 LKHR-----LFLYTMKD 92 (100)
T ss_dssp SSCB-----CEEEESHH
T ss_pred CCeE-----EEEEECch
Confidence 9 77 99999963
No 60
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.1e-19 Score=134.34 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---HhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVS---HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~---~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
...++|||+|||+++++++|+ ++|++||+|++|+|+.+......++++|||||+|.+.++|++|++.|||..|.++.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456899999999999999999 99999999999999875332112367799999999999999999999999999998
Q ss_pred CCCCceEEEeecCC
Q 026189 215 PDSPTLKIQFAHFP 228 (242)
Q Consensus 215 ~~~~~LrV~~ar~~ 228 (242)
|+|+||+..
T Consensus 93 -----l~V~~a~~k 101 (111)
T 2cpi_A 93 -----LKASLGTTK 101 (111)
T ss_dssp -----EEEESCCCC
T ss_pred -----EEEEecccc
Confidence 999999864
No 61
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=126.54 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=71.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHH-CCceeCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL-HGYKFDDKK 214 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L-~G~~i~g~~ 214 (242)
.....++|||+|||.++++++|+++|++||.|.+|+++. ++|||||+|.+.++|++|++.| ++..+.++.
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 356778999999999999999999999999999999974 4679999999999999999999 999999988
Q ss_pred CCCCceEEEeec
Q 026189 215 PDSPTLKIQFAH 226 (242)
Q Consensus 215 ~~~~~LrV~~ar 226 (242)
|+|+|||
T Consensus 79 -----l~v~~ak 85 (85)
T 2ytc_A 79 -----LNVKWGR 85 (85)
T ss_dssp -----CCEEECC
T ss_pred -----EEEEecC
Confidence 9999986
No 62
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.9e-19 Score=133.86 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCc--eeCCC
Q 026189 137 KGESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY--KFDDK 213 (242)
Q Consensus 137 ~~~~~tLfVgnLp~-~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~--~i~g~ 213 (242)
.+++++|||+|||+ ++||+||+++|++||.|.+|+|+. .+|||||+|++.++|++|++.|++. .|.|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---------KINEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 45789999999999 999999999999999999999964 2469999999999999999999865 58998
Q ss_pred CCCCCceEEEeecCCCC
Q 026189 214 KPDSPTLKIQFAHFPFH 230 (242)
Q Consensus 214 ~~~~~~LrV~~ar~~~~ 230 (242)
. |+|+||+...+
T Consensus 83 ~-----l~V~~a~~~~~ 94 (102)
T 1x4d_A 83 P-----VRVHLSQKYKR 94 (102)
T ss_dssp E-----CEEEEECCCTT
T ss_pred E-----EEEEECCCCCC
Confidence 8 99999986443
No 63
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-18 Score=130.41 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCc--eeCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY--KFDDKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~--~i~g~~ 214 (242)
..++++|||+|||++++|++|+++|++||.|++|+++. .||||||+|++.++|++|++.|++. .+.++.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 45678999999999999999999999999999999864 2579999999999999999999765 488887
Q ss_pred CCCCceEEEeecCCC
Q 026189 215 PDSPTLKIQFAHFPF 229 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 83 -----l~V~~a~~~~ 92 (104)
T 1wex_A 83 -----AFFNYSTSKR 92 (104)
T ss_dssp -----CEEEECSSSS
T ss_pred -----EEEEEccCcc
Confidence 9999998643
No 64
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=126.20 Aligned_cols=78 Identities=24% Similarity=0.410 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++++++|+++|++||.|++|+++ +|||||+|.+.++|++|++.|++..+.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 71 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN-- 71 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB--
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcE--
Confidence 4567899999999999999999999999999999986 249999999999999999999999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 72 ---l~v~~a~~~~~ 82 (90)
T 2dnq_A 72 ---INVEASKNKSK 82 (90)
T ss_dssp ---CEEECSSCCCC
T ss_pred ---EEEEECCCCCC
Confidence 99999987544
No 65
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-19 Score=134.02 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
+...++|||+|||.++++++|+++|++||.|.+|+++.+. ..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 79 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR---ETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA-- 79 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET---TTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC--
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC---CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE--
Confidence 3456899999999999999999999999999999998742 23689999999999999999999999999999998
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 80 ---l~v~~a~~~~ 89 (104)
T 1p1t_A 80 ---LRVDNAASEK 89 (104)
T ss_dssp ---BEEEETTCTT
T ss_pred ---EEEEeCCCcc
Confidence 9999998643
No 66
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.1e-19 Score=135.21 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCC--ceeCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG--YKFDDKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G--~~i~g~~ 214 (242)
+.+.++|||+|||+++||++|+++|++||+|++|+|+. .||||||+|++.++|++|++.|++ ..|.|+.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~---------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 45678999999999999999999999999999999974 257999999999999999999874 7899988
Q ss_pred CCCCceEEEeecCCC
Q 026189 215 PDSPTLKIQFAHFPF 229 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 84 -----l~V~~A~~~~ 93 (105)
T 1sjq_A 84 -----IYIQFSNHKE 93 (105)
T ss_dssp -----CCBCCCSSSS
T ss_pred -----EEEEEcCCCC
Confidence 9999998643
No 67
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.2e-18 Score=127.41 Aligned_cols=81 Identities=16% Similarity=0.297 Sum_probs=73.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCc
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 219 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~ 219 (242)
.++|||+|||.++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|+ .|+|..+.++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~----- 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCD---KFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQ----- 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEES---CSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEE-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEec---CCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcE-----
Confidence 579999999999999999999999999999999874 223588999999999999999999 99999999998
Q ss_pred eEEEeecCCC
Q 026189 220 LKIQFAHFPF 229 (242)
Q Consensus 220 LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 77 l~V~~a~~~~ 86 (89)
T 3ucg_A 77 IKVIPKRTNR 86 (89)
T ss_dssp CEEEETTTTS
T ss_pred EEEEEccCCC
Confidence 9999998643
No 68
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=131.64 Aligned_cols=85 Identities=20% Similarity=0.334 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++++++|+++|++||+|++|+|+.+ +..++++|||||+|.+.++|++|++. ++..|.++.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~-- 86 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD---KTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN-- 86 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEEC---SSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE--
Confidence 567789999999999999999999999999999999884 22368999999999999999999988 999999998
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 87 ---l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 ---IDPKPCTPRGM 97 (105)
T ss_dssp ---EBCCCSCCSSC
T ss_pred ---EEEEEccCCCC
Confidence 99999986544
No 69
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6e-18 Score=129.59 Aligned_cols=88 Identities=13% Similarity=0.300 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC-
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP- 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~- 215 (242)
....++|||+|||.++++++|+++|++||.|.+|+|+.+. + ++++|||||+|.+.++|++|++.|||..|.++.-
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS---S-GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS---S-SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC---C-CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 4567899999999999999999999999999999999853 2 5899999999999999999999999999954320
Q ss_pred --CCCceEEEeecCC
Q 026189 216 --DSPTLKIQFAHFP 228 (242)
Q Consensus 216 --~~~~LrV~~ar~~ 228 (242)
...+|+|.|++.+
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 1234999999844
No 70
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=128.57 Aligned_cols=79 Identities=18% Similarity=0.355 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++++++|+++|++||.|. ++++. ++++|||||+|.+.++|++|++.|||..|.++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 85 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-------QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT-- 85 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-------ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC--
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-------CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 45678999999999999999999999999997 67765 366789999999999999999999999999998
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 86 ---l~V~~a~~~ 94 (97)
T 2e5j_A 86 ---LRVALARQQ 94 (97)
T ss_dssp ---CEEEECCCC
T ss_pred ---EEEEEcCCC
Confidence 999999864
No 71
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.6e-19 Score=134.63 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++. ++..|.++.
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~-- 97 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRD---PASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRV-- 97 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECC---TTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEE--
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEEC---CCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEE--
Confidence 345689999999999999999999999999999999874 33358999999999999999999988 999999998
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 98 ---l~V~~a~~~~~ 108 (116)
T 1x4b_A 98 ---VEPKRAVAREE 108 (116)
T ss_dssp ---EEEECCSSCCC
T ss_pred ---EEEEECCCCcc
Confidence 99999986543
No 72
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.6e-18 Score=125.43 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~-- 81 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMD---PNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRV-- 81 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEEC---TTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeec---CCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEE--
Confidence 567789999999999999999999999999999999874 2336899999999999999999994 5888999988
Q ss_pred CCceEEEee
Q 026189 217 SPTLKIQFA 225 (242)
Q Consensus 217 ~~~LrV~~a 225 (242)
|+|++|
T Consensus 82 ---i~v~~A 87 (87)
T 3s7r_A 82 ---IDPKKA 87 (87)
T ss_dssp ---EEEEEC
T ss_pred ---EEEEeC
Confidence 999986
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=129.19 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVS----HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~----~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
....++|||+|||+++++++|+ ++|++||.|++|+|+.+.. . +|||||+|.+.++|++|++.|||..+.+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~-----~-rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD-----Y-QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS-----T-TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC-----C-CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456899999999999999999 9999999999999986422 1 6799999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCC
Q 026189 213 KKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 213 ~~~~~~~LrV~~ar~~~ 229 (242)
+. |+|+|++...
T Consensus 80 r~-----l~V~~a~~~~ 91 (96)
T 2dgx_A 80 KK-----ILVSLATGAS 91 (96)
T ss_dssp EE-----EEEEECCCSS
T ss_pred eE-----EEEEEcCCCC
Confidence 98 9999998643
No 74
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=127.58 Aligned_cols=83 Identities=25% Similarity=0.384 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++++++|+++|++|+ +|+++.+ +..++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 83 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTD---RETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK-- 83 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEEC---SSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEec---CCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE--
Confidence 56778999999999999999999999874 5677763 222589999999999999999999999999999998
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 84 ---l~V~~a~~~~~ 94 (102)
T 2fc8_A 84 ---VTLDWAKPKGE 94 (102)
T ss_dssp ---CEEEECCCCCS
T ss_pred ---EEEEEecCCCC
Confidence 99999986543
No 75
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=132.26 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCce--eCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYK--FDDKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~--i~g~~ 214 (242)
..++++|||+|||+++|+++|+++|++||.|.+|++++ .||||||+|++.++|++|++.|++.. +.|++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 45789999999999999999999999999999999973 35799999999999999999999885 77887
Q ss_pred CCCCceEEEeecCC
Q 026189 215 PDSPTLKIQFAHFP 228 (242)
Q Consensus 215 ~~~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 89 -----i~V~~S~~k 97 (100)
T 3r27_A 89 -----AFVNYSTSQ 97 (100)
T ss_dssp -----EEEEECSCS
T ss_pred -----EEEEecccc
Confidence 999999753
No 76
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=127.95 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++++++|+++|++||.| +++.+ .+ ++++|||||+|.+.++|++|++.|++..|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~---~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 82 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN---QN-GKSKGYAFIEFASFEDAKEALNSCNKREIEGRA-- 82 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC---SS-SCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC---CC-CCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE--
Confidence 4567999999999999999999999999976 45543 22 588999999999999999999999999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++...+
T Consensus 83 ---l~v~~a~~~~~ 93 (101)
T 2fc9_A 83 ---IRLELQGPRGS 93 (101)
T ss_dssp ---EEEEECSSCCC
T ss_pred ---EEEEEcCCCCC
Confidence 99999986543
No 77
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=131.42 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCe----EEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGY----REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i----~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
..++++|||+|||.++|+++|+++|++||.| +.+++.. ++++|||||+|.+.++|++|++.|+|..|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-------g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT-------GRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC-------SSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC-------CccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4567899999999999999999999999998 5555542 5888999999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCCC
Q 026189 213 KKPDSPTLKIQFAHFPFH 230 (242)
Q Consensus 213 ~~~~~~~LrV~~ar~~~~ 230 (242)
+. |+|+|++....
T Consensus 95 ~~-----l~v~~a~~~~~ 107 (115)
T 2cpx_A 95 KI-----LVIEFGKNKKQ 107 (115)
T ss_dssp CB-----CEEEECCCCSC
T ss_pred cE-----EEEEEccCCCC
Confidence 88 99999986543
No 78
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=5.6e-18 Score=131.95 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
....+++|||+|||.++++++|+++|++||.|++|+|+.+. + ++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~- 105 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR---S-GRSLGTADVHFERRADALKAMKQYKGVPLDGRP- 105 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS---S-SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC---C-CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE-
Confidence 35677899999999999999999999999999999998743 2 589999999999999999999999999999988
Q ss_pred CCCceEEEeecCCC
Q 026189 216 DSPTLKIQFAHFPF 229 (242)
Q Consensus 216 ~~~~LrV~~ar~~~ 229 (242)
|+|+||....
T Consensus 106 ----l~V~~a~~~~ 115 (124)
T 2kt5_A 106 ----MDIQLVASQI 115 (124)
T ss_dssp ----EEEEEECCTT
T ss_pred ----EEEEEeCCCC
Confidence 9999998644
No 79
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=136.42 Aligned_cols=83 Identities=18% Similarity=0.332 Sum_probs=73.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVS----HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 211 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~----~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~ 211 (242)
...++++|||+|||+.+++++|+ ++|++||.|++|.+.. + ++++|||||+|.+.++|++|++.|||..|.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-----~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-----S-DDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-----C-CSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-----C-CCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34567899999999999999876 6999999999988742 2 478999999999999999999999999999
Q ss_pred CCCCCCCceEEEeecCCC
Q 026189 212 DKKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 212 g~~~~~~~LrV~~ar~~~ 229 (242)
|+. |+|+|++...
T Consensus 99 gr~-----l~V~~a~~~~ 111 (127)
T 2a3j_A 99 GNP-----LVITFSETPQ 111 (127)
T ss_dssp TSC-----CEEEECCCCC
T ss_pred CCE-----EEEEEccCcc
Confidence 998 9999998643
No 80
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.8e-18 Score=127.88 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC--CceeCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH--GYKFDDKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~--G~~i~g~~ 214 (242)
..++++|||+|||++++|++|+++|++||.|++|+++. .||||||+|++.++|++|++.|+ +..+.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK---------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 45678999999999999999999999999999998864 25799999999999999999874 67899988
Q ss_pred CCCCceEEEeecCC
Q 026189 215 PDSPTLKIQFAHFP 228 (242)
Q Consensus 215 ~~~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 83 -----l~V~~a~~~ 91 (101)
T 2cq1_A 83 -----IYIQYSNHK 91 (101)
T ss_dssp -----CEEEECSCS
T ss_pred -----EEEEEcCcc
Confidence 999999854
No 81
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=7.2e-19 Score=130.27 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
+..++|||+|||+++++++|+++|++||.|++++++.+. ..++++|||||+|.+.++|++|++.||+..|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~--- 86 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK--- 86 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC---TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC---CCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE---
Confidence 345899999999999999999999999999988888742 23589999999999999999999999999999998
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|+++.+
T Consensus 87 --l~v~~a~s 94 (95)
T 2ek1_A 87 --VKLSGPSS 94 (95)
T ss_dssp --CEEECCC-
T ss_pred --EEEEeccC
Confidence 99999864
No 82
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2.5e-18 Score=140.65 Aligned_cols=86 Identities=19% Similarity=0.279 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
...+++|||+|||+++++++|+++|++||.|+.|+|+.+ +..++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-- 143 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLD---RRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT-- 143 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEec---CCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE--
Confidence 456789999999999999999999999999999999874 233689999999999999999999999999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 144 ---l~V~~a~~~~~ 154 (165)
T 1rk8_A 144 ---IQVDWCFVKGP 154 (165)
T ss_dssp ---CEEEESEECC-
T ss_pred ---EEEEEecCCCC
Confidence 99999986443
No 83
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=126.51 Aligned_cols=79 Identities=24% Similarity=0.357 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++++++|+++|++||.|++|++.. ++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~---------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~-- 80 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK---------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQ-- 80 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET---------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCEeCCce--
Confidence 35678999999999999999999999999999999963 3579999999999999999999999999998
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 81 ---l~v~~a~~~~ 90 (99)
T 2cpj_A 81 ---LRVRFACHSA 90 (99)
T ss_dssp ---CEEEESSCCS
T ss_pred ---EEEEEcCCCC
Confidence 9999998644
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=132.16 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+ +. ++++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d---~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~--- 80 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT---LH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETD--- 80 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECC---CT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTT---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEEC---CC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEE---
Confidence 45689999999999999999999999999999999874 33 5899999999999999999998 9999999998
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|.|++.
T Consensus 81 --l~V~~~~~ 88 (103)
T 1s79_A 81 --LLILFKDD 88 (103)
T ss_dssp --CEEEEHHH
T ss_pred --EEEEEchH
Confidence 99999864
No 85
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-18 Score=126.28 Aligned_cols=79 Identities=19% Similarity=0.424 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC--CCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD--DKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~--g~~ 214 (242)
..+.++|||+|||.++++++|+++|++||.|++|+++. .+|||||+|.+.++|++|++.|||..+. ++.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK---------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS---------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC---------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 45678999999999999999999999999999998853 2569999999999999999999999999 777
Q ss_pred CCCCceEEEeecCCC
Q 026189 215 PDSPTLKIQFAHFPF 229 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 85 -----l~V~~a~~~~ 94 (97)
T 1why_A 85 -----LRVDFAKSGP 94 (97)
T ss_dssp -----CEEEECCCCC
T ss_pred -----EEEEECCCCC
Confidence 9999998643
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=2e-18 Score=134.13 Aligned_cols=83 Identities=12% Similarity=0.254 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..++|||+|||.++|+++|+++|++||.|++|+++.+. ..++++|||||+|.+.++|++|+ .|+|..|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~---- 106 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDK---FSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT---- 106 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEEC---TTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---CCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeE----
Confidence 46799999999999999999999999999999998842 22589999999999999999999 89999999998
Q ss_pred ceEEEeecCCCC
Q 026189 219 TLKIQFAHFPFH 230 (242)
Q Consensus 219 ~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 107 -l~V~~a~~~~~ 117 (124)
T 2jwn_A 107 -IKVLPKRTNMP 117 (124)
T ss_dssp -CEEEESSCCCS
T ss_pred -EEEEECCCCCC
Confidence 99999986554
No 87
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=6.7e-19 Score=140.14 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=78.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
...+.++|||+|||+++|+++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~- 118 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD---RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE- 118 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC---SSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE-
Confidence 3456789999999999999999999999999999999863 223589999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCC
Q 026189 216 DSPTLKIQFAHFPFHLP 232 (242)
Q Consensus 216 ~~~~LrV~~ar~~~~~~ 232 (242)
|+|+|++.....+
T Consensus 119 ----l~V~~a~~~~~~~ 131 (135)
T 2lea_A 119 ----LRVQMARYGRPPD 131 (135)
T ss_dssp ----CEEEECCCCCCCT
T ss_pred ----EEEEECCCCCCCc
Confidence 9999998755433
No 88
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.8e-18 Score=124.67 Aligned_cols=81 Identities=14% Similarity=0.247 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++++++|+++|++| +|.+|+|+.+ .+ ++++|||||+|.+.++|++|++ |+|..|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~---~~-g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~-- 78 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN---AH-GNKTGYIFVDFSNEEEVKQALK-CNREYMGGRY-- 78 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC---TT-SCEEEEEEEECSSHHHHHHHHH-SCSEEETTEE--
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC---CC-CCCceEEEEEECCHHHHHHHHH-hCCceeCCcE--
Confidence 4567899999999999999999999999 9999999985 22 5899999999999999999999 9999999998
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|.+++..
T Consensus 79 ---i~v~~a~~~ 87 (91)
T 2dgw_A 79 ---IEVFREKSG 87 (91)
T ss_dssp ---EEEEEESSC
T ss_pred ---EEEEECCcC
Confidence 999999754
No 89
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=133.99 Aligned_cols=81 Identities=20% Similarity=0.359 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||+++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|+ .|+|..|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~--- 95 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISD---RNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVP--- 95 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCS---CCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEec---CCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeE---
Confidence 45679999999999999999999999999999999874 333588999999999999999999 99999999998
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 96 --l~V~~a~~ 103 (114)
T 2cq4_A 96 --IIVQASQA 103 (114)
T ss_dssp --EEEEEHHH
T ss_pred --EEEEecCC
Confidence 99999974
No 90
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.6e-18 Score=126.51 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=74.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
...+.++|||+|||+++++++|+++|++||.|++|+|+.+ +..++++|||||+|.+.++|++|++ ++..+.++.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~- 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD---LKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRW- 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEEC---SSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEE-
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEec---CCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeE-
Confidence 3566789999999999999999999999999999999874 2336999999999999999999997 578999988
Q ss_pred CCCceEEEeecCCC
Q 026189 216 DSPTLKIQFAHFPF 229 (242)
Q Consensus 216 ~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 85 ----l~v~~a~~~~ 94 (103)
T 2cqg_A 85 ----CDCKLPNSKQ 94 (103)
T ss_dssp ----EEEECCCTTC
T ss_pred ----EEEEecCCCC
Confidence 9999998644
No 91
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=140.56 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFV--GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG--~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
...++|||+|||+++|+++|+++|++|| .|++|+|+.+ +..|+++|||||+|.+.++|++|++.|+|..|.|+.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d---~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~- 128 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAEN---RANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK- 128 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEEC---TTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE-
Confidence 3568999999999999999999999999 9999999984 333699999999999999999999999999999998
Q ss_pred CCCceEEEeec
Q 026189 216 DSPTLKIQFAH 226 (242)
Q Consensus 216 ~~~~LrV~~ar 226 (242)
|+|+|+.
T Consensus 129 ----l~V~~a~ 135 (156)
T 3n9u_C 129 ----VDVRPAT 135 (156)
T ss_dssp ----CEEEECC
T ss_pred ----eEEEEcC
Confidence 9999996
No 92
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.1e-18 Score=124.95 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++++++|+++|++||.|++|++++ +||||+|.+.++|++|++.|+|..+.++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 73 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----------DYAFVHMERAEDAVEAIRGLDNTEFQGKR-- 73 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----------SEEEEEESCHHHHHHHHHHHTTEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCeeCCcE--
Confidence 56778999999999999999999999999999999853 29999999999999999999999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 74 ---l~V~~a~~~~~ 84 (92)
T 2dgt_A 74 ---MHVQLSTSRLR 84 (92)
T ss_dssp ---EEEEESSCCCS
T ss_pred ---EEEEEccCCCC
Confidence 99999986544
No 93
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.75 E-value=3.9e-18 Score=137.65 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++++++|+++|++||.|.+|+|+.+ +..++++|||||+|.+.++|++|++.|||..|.++.
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 141 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD---RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE-- 141 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCC---SSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeec---CCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 456789999999999999999999999999999999874 223689999999999999999999999999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 142 ---l~v~~a~~~~~ 152 (158)
T 2kn4_A 142 ---LRVQMARYGRP 152 (158)
T ss_dssp ---EEEEEECCSSC
T ss_pred ---EEEEECCCCCC
Confidence 99999986543
No 94
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=128.78 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++||+||+++|++|| +++|+|+.++ + ++++|||||+|.+.++|++|+ .+++..|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~---~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~-- 83 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP---D-GRVTGEADVEFATHEDAVAAM-AKDKANMQHRY-- 83 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS---S-SCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC---C-CCEeeEEEEEECCHHHHHHHH-HhCCCeECCcE--
Confidence 35568999999999999999999999999 5599998853 3 699999999999999999999 57999999998
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|.++..+.+
T Consensus 84 ---i~V~~~~~~~~ 94 (102)
T 1wez_A 84 ---VELFLNSTAGT 94 (102)
T ss_dssp ---CEEEEECCCCC
T ss_pred ---EEEEECCCCCC
Confidence 99999986554
No 95
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=3e-18 Score=131.27 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.....++|||+|||+++++++|+++|++||.|.+|+|+.+ +.+++++|||||+|.+.++|++|++.+ +..+.|+.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~- 95 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD---PLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT- 95 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCC---TTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEE-
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEEC---CCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE-
Confidence 3567789999999999999999999999999999999873 333689999999999999999999876 59999988
Q ss_pred CCCceEEEeecCCC
Q 026189 216 DSPTLKIQFAHFPF 229 (242)
Q Consensus 216 ~~~~LrV~~ar~~~ 229 (242)
|+|+|+....
T Consensus 96 ----l~V~~a~~~~ 105 (109)
T 2rs2_A 96 ----IDPKVAFPRR 105 (109)
T ss_dssp ----EEEEECCCCC
T ss_pred ----EEEEEccCCC
Confidence 9999998543
No 96
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6e-18 Score=132.76 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCC--ceeCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG--YKFDDKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G--~~i~g~~ 214 (242)
..++++|||+|||+++||++|+++|++||.|++|+|+. .||||||+|++.++|++|++.|++ ..|.|+.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~---------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG---------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 45678999999999999999999999999999999974 257999999999999999999984 6899988
Q ss_pred CCCCceEEEeecCCC
Q 026189 215 PDSPTLKIQFAHFPF 229 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 99 -----l~V~~a~~k~ 108 (119)
T 2ad9_A 99 -----IYIQFSNHKE 108 (119)
T ss_dssp -----CEEEECSSSS
T ss_pred -----EEEEEccCCC
Confidence 9999998643
No 97
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=5.3e-18 Score=130.10 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
++++++|||+|||+++++++|+++|++||.|.+|+++.+ ++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 76 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRY-- 76 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCB--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE--
Confidence 467789999999999999999999999999999999753 356889999999999999999999999999988
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 77 ---l~v~~a~~ 84 (115)
T 3lqv_A 77 ---LVVLYYNA 84 (115)
T ss_dssp ---CEEEECCH
T ss_pred ---EEEEEecC
Confidence 99999974
No 98
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=131.30 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||.++++++|+++|++||.|++|+++.+. +.++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-----~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~-- 98 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-----RGSKGFGFVTFENSADADRAREKLHGTVVEGRK-- 98 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-----TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-----CCCceEEEEEECCHHHHHHHHHHcCCCEECCEE--
Confidence 4567899999999999999999999999999999998642 257899999999999999999999999999998
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 99 ---l~V~~a~~ 106 (109)
T 2err_A 99 ---IEVNNATA 106 (109)
T ss_dssp ---CEEEECCC
T ss_pred ---EEEEECCC
Confidence 99999974
No 99
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=131.11 Aligned_cols=83 Identities=19% Similarity=0.389 Sum_probs=71.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.....++|||+|||+++++++|+++|++|| |++|+|+.+. ...++++|||||+|.+.++|++|+ .|+|..|.++.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~--~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~- 89 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP--SNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR- 89 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCT--TTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC--CcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE-
Confidence 356778999999999999999999999999 9999998642 123689999999999999999999 99999999998
Q ss_pred CCCceEEEeecC
Q 026189 216 DSPTLKIQFAHF 227 (242)
Q Consensus 216 ~~~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 90 ----l~V~~a~~ 97 (100)
T 2j76_E 90 ----IRVDVADQ 97 (100)
T ss_dssp ----CCCEECCC
T ss_pred ----EEEEeccC
Confidence 99999974
No 100
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.1e-18 Score=127.16 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~-~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.++.++|||+|||+ ++++++|+++|++||.|++|++. +|||||+|.+.++|++|++.|+|..+.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 74 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFGKK- 74 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBTTT-
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCCcE-
Confidence 45688999999998 99999999999999999999883 359999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCCC
Q 026189 216 DSPTLKIQFAHFPFHLPS 233 (242)
Q Consensus 216 ~~~~LrV~~ar~~~~~~~ 233 (242)
|+|+|++...+...
T Consensus 75 ----l~V~~a~~~~~~~~ 88 (96)
T 2kvi_A 75 ----LILEVSSSNARPQF 88 (96)
T ss_dssp ----BCEEEEECCCC---
T ss_pred ----EEEEEcCcCCCCCC
Confidence 99999987554333
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=2.6e-18 Score=130.50 Aligned_cols=82 Identities=18% Similarity=0.328 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCC------CHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCcee
Q 026189 137 KGESNLLFVDGLPTDC------TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKF 210 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~------te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i 210 (242)
....++|||+|||+.+ |+++|+++|++||.|.+|+|+ + .+ |+++|||||+|.+.++|++|++.|||..+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~---~~-g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-E---ED-GKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-C---BT-TBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-C---CC-CCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 4457899999999999 789999999999999999986 2 22 58999999999999999999999999999
Q ss_pred CCC-CCCCCceEEEeecCC
Q 026189 211 DDK-KPDSPTLKIQFAHFP 228 (242)
Q Consensus 211 ~g~-~~~~~~LrV~~ar~~ 228 (242)
.++ . |+|+|+..-
T Consensus 87 ~g~~~-----l~V~~a~~~ 100 (105)
T 2nlw_A 87 DKQHT-----FRVNLFTDF 100 (105)
T ss_dssp STTCE-----EEEECSCCC
T ss_pred CCCce-----EEEEEcchH
Confidence 998 7 999999743
No 102
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=2e-18 Score=128.37 Aligned_cols=83 Identities=22% Similarity=0.397 Sum_probs=74.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVS----HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 211 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~----~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~ 211 (242)
..+++++|||+|||.++++++|+ ++|++||.|.+|++.. + ++++|||||+|.+.++|++|++.|+|..+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-----~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-----S-LKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-----H-HHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-----C-CCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 35678999999999999999999 9999999999998863 2 478899999999999999999999999999
Q ss_pred CCCCCCCceEEEeecCCC
Q 026189 212 DKKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 212 g~~~~~~~LrV~~ar~~~ 229 (242)
++. |+|+|++...
T Consensus 78 g~~-----l~v~~a~~~~ 90 (97)
T 1nu4_A 78 DKP-----MRIQYAKTDS 90 (97)
T ss_dssp TEE-----CEEEECSSCC
T ss_pred CcE-----EEEEEccCCC
Confidence 988 9999998654
No 103
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.5e-18 Score=123.32 Aligned_cols=75 Identities=23% Similarity=0.400 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceE
Q 026189 142 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 221 (242)
Q Consensus 142 tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~Lr 221 (242)
+|||+|||+++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++ |++..+.++. |+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~-----l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFD---KTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKM-----VE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBC---SSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCC-----CE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEec---CCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEE-----EE
Confidence 5999999999999999999999999999999874 2235899999999999999999997 9999999998 99
Q ss_pred EEee
Q 026189 222 IQFA 225 (242)
Q Consensus 222 V~~a 225 (242)
|+||
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9986
No 104
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=124.54 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++|+++|+++|++||.|.+|++++ +||||+|.+.++|++|++.|+|..+.++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 72 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----------DYAFVHMEKEADAKAAIAQLNGKEVKGKR-- 72 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESCHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCEECCcE--
Confidence 45678999999999999999999999999999999853 29999999999999999999999999998
Q ss_pred CCceEEEeecCCCCCC
Q 026189 217 SPTLKIQFAHFPFHLP 232 (242)
Q Consensus 217 ~~~LrV~~ar~~~~~~ 232 (242)
|+|+|++.....+
T Consensus 73 ---l~v~~a~~~~~~~ 85 (90)
T 2dnp_A 73 ---INVELSTKGQKKS 85 (90)
T ss_dssp ---CEEEESCCCCCCC
T ss_pred ---EEEEECCCCCCCC
Confidence 9999998764433
No 105
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=7.6e-18 Score=128.54 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPTD-CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~-~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
....++|||+|||++ +++++|+++|++||.|++|++ ++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 91 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----------HKGYAFVQYSNERHARAAVLGENGRVLAGQT- 91 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----------ETTEEEEECSSSHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----------eCCEEEEEECCHHHHHHHHHHcCCCEECCeE-
Confidence 445689999999999 999999999999999999988 2359999999999999999999999999998
Q ss_pred CCCceEEEeecCCCC
Q 026189 216 DSPTLKIQFAHFPFH 230 (242)
Q Consensus 216 ~~~~LrV~~ar~~~~ 230 (242)
|+|+|++.+..
T Consensus 92 ----l~V~~a~~~~~ 102 (110)
T 1wf1_A 92 ----LDINMAGEPKP 102 (110)
T ss_dssp ----CCEEESCCCCS
T ss_pred ----EEEEECCCCCC
Confidence 99999986543
No 106
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.5e-18 Score=130.59 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCC--ceeCCC
Q 026189 137 KGESNLLFVDGLPTD-CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG--YKFDDK 213 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~-~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G--~~i~g~ 213 (242)
..++++|||+|||++ ++|++|+++|++||+|.+|+|++ ++|||||+|++.++|++|++.|++ ..|.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---------MKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---------CCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 456889999999998 99999999999999999999963 457999999999999999998864 568998
Q ss_pred CCCCCceEEEeecCCC
Q 026189 214 KPDSPTLKIQFAHFPF 229 (242)
Q Consensus 214 ~~~~~~LrV~~ar~~~ 229 (242)
. |+|+|++...
T Consensus 93 ~-----l~V~~a~~~~ 103 (112)
T 1x4f_A 93 C-----VKVDLSEKYK 103 (112)
T ss_dssp C-----CEEEEECSCS
T ss_pred E-----EEEEECcccc
Confidence 8 9999997543
No 107
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=1.6e-18 Score=134.27 Aligned_cols=81 Identities=15% Similarity=0.170 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG-~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
+...++|||+|||+++++++|+++|++|| +|..|++.. .+++|||||+|.+.++|++|++.|||..+.++.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~- 96 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-------RDFDGTGALEFPSEEILVEALERLNNIEFRGSV- 96 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE-
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE-
Confidence 34568999999999999999999999999 899998853 256789999999999999999999999999998
Q ss_pred CCCceEEEeecCCC
Q 026189 216 DSPTLKIQFAHFPF 229 (242)
Q Consensus 216 ~~~~LrV~~ar~~~ 229 (242)
|+|++++.+.
T Consensus 97 ----i~V~~a~~~p 106 (111)
T 2jvr_A 97 ----ITVERDDNPP 106 (111)
T ss_dssp ----EEEEESCC--
T ss_pred ----EEEEECCCCC
Confidence 9999998653
No 108
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.2e-18 Score=128.41 Aligned_cols=77 Identities=17% Similarity=0.338 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
...+++|||+|||.++++++|+++|++||.|++|+++ +++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~-- 92 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN-- 92 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE--
Confidence 3456899999999999999999999999999999996 34579999999999999999999999999998
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 93 ---l~V~~a~~ 100 (101)
T 2la4_A 93 ---LRTGWGKE 100 (101)
T ss_dssp ---CCCCBCCC
T ss_pred ---EEEEeccC
Confidence 99999974
No 109
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=9.9e-18 Score=125.78 Aligned_cols=78 Identities=21% Similarity=0.375 Sum_probs=70.9
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 136 KKGESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~-~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
..+++++|||+|||+ ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|+|..+.+++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 356788999999998 99999999999999999999882 359999999999999999999999999998
Q ss_pred CCCCceEEEeecCCC
Q 026189 215 PDSPTLKIQFAHFPF 229 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 87 -----l~V~~a~~~~ 96 (97)
T 2xnq_A 87 -----LILEVSSSNA 96 (97)
T ss_dssp -----CEEEECCCCC
T ss_pred -----EEEEecCCCC
Confidence 9999998643
No 110
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=123.40 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPF--VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~f--G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~ 214 (242)
..+.++|||+|||+++++++|+++|++| |.|.+|++. +|||||+|.+.++|++|++.|||..|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4567899999999999999999999999 999988763 359999999999999999999999999988
Q ss_pred CCCCceEEEeecCCCC
Q 026189 215 PDSPTLKIQFAHFPFH 230 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~~ 230 (242)
|+|+|++...+
T Consensus 81 -----l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 -----IEVTLAKPVDK 91 (99)
T ss_dssp -----EEEECCCCCCC
T ss_pred -----EEEEECCCCCC
Confidence 99999986543
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=7.8e-18 Score=128.96 Aligned_cols=79 Identities=27% Similarity=0.600 Sum_probs=71.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.....++|||+|||.++++++|+++|++||.|++|+++ +|||||+|.+.++|++|++.|+|..+.++.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~- 94 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFANQP- 94 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeE-
Confidence 35677899999999999999999999999999999996 359999999999999999999999999988
Q ss_pred CCCceEEEeecCCCC
Q 026189 216 DSPTLKIQFAHFPFH 230 (242)
Q Consensus 216 ~~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 95 ----l~V~~a~~~~~ 105 (108)
T 2jvo_A 95 ----LEVVYSKLPAK 105 (108)
T ss_dssp ----CEEESCSCCC-
T ss_pred ----EEEEEecCCCC
Confidence 99999986543
No 112
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=122.80 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=69.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
++|||+|||.++++++|+++|++||+|.+|+++.+ +..++++|||||+|.+.++|++|++.++ ..+.|+. |
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~-----l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRD---PLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKT-----I 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECC---CCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCC-----C
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecC---CCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEE-----E
Confidence 47999999999999999999999999999999873 3336899999999999999999999999 9999988 9
Q ss_pred EEEee
Q 026189 221 KIQFA 225 (242)
Q Consensus 221 rV~~a 225 (242)
+|+||
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 113
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-18 Score=128.62 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC--CceeCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVG-YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH--GYKFDDKK 214 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~-i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~--G~~i~g~~ 214 (242)
.+.++|||+|||+++++++|+++|++||. |++|+++.. .+..++++|||||+|.+.++|++|++.|+ +..+.++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~--~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYAS--AADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSS--SCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEcc--CCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 45789999999999999999999999998 999988732 22235899999999999999999999996 58999998
Q ss_pred CCCCceEEEeecCCC
Q 026189 215 PDSPTLKIQFAHFPF 229 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 84 -----l~V~~a~~~~ 93 (109)
T 2dis_A 84 -----IAVDWAEPEI 93 (109)
T ss_dssp -----CEEEESCSSC
T ss_pred -----EEEEEcCCCC
Confidence 9999998543
No 114
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=132.99 Aligned_cols=81 Identities=20% Similarity=0.390 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++++++|+++|++||.|++|+++.+ +..++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 134 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLD---YETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT-- 134 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCC---TTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE--
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeec---CCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE--
Confidence 456789999999999999999999999999999999874 223589999999999999999999999999999988
Q ss_pred CCceEEEee
Q 026189 217 SPTLKIQFA 225 (242)
Q Consensus 217 ~~~LrV~~a 225 (242)
|+|+||
T Consensus 135 ---l~v~~A 140 (140)
T 2ku7_A 135 ---IRVNLA 140 (140)
T ss_dssp ---EEEEC-
T ss_pred ---EEEEeC
Confidence 999986
No 115
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.4e-18 Score=132.83 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=72.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++|+++|+++|++||.|.++.++.+ ..+ ++++|||||+|.+.++|++|++ |++..|.++.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~--~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~-- 95 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAY--GPN-GKATGEGFVEFRNEADYKAALC-RHKQYMGNRF-- 95 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEE--CTT-SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSC--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEE--CCC-CCCCeEEEEEECCHHHHHHHHH-hCCCeECCcE--
Confidence 456789999999999999999999999999988555553 223 6999999999999999999998 9999999998
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|.++..
T Consensus 96 ---i~V~~a~~ 103 (124)
T 1wel_A 96 ---IQVHPITK 103 (124)
T ss_dssp ---BEEEEECH
T ss_pred ---EEEEECCH
Confidence 99999863
No 116
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=1.5e-17 Score=125.45 Aligned_cols=78 Identities=23% Similarity=0.443 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++|+++|+++|++||.|++|++++ +||||+|.+.++|++|++.|++..|.++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 74 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-----------DYAFIHFDERDGAVKAMEEMNGKDLEGEN-- 74 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESSHHHHHHHHHHHTTEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------CEEEEEeCCHHHHHHHHHHHCCCccCCCE--
Confidence 35678999999999999999999999999999998852 39999999999999999999999999988
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|+|++....
T Consensus 75 ---l~v~~a~~~~~ 85 (103)
T 2dgu_A 75 ---IEIVFAKPPDQ 85 (103)
T ss_dssp ---EEEEECCCCCC
T ss_pred ---EEEEEcCCCcc
Confidence 99999986544
No 117
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.5e-18 Score=125.31 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCC-ceeCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVG-YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG-YKFDDKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~-i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G-~~i~g~~ 214 (242)
....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..+.++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------CCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 456789999999999999999999999999 5555552 356999999999999999999999 9999988
Q ss_pred CCCCceEEEeecCCC
Q 026189 215 PDSPTLKIQFAHFPF 229 (242)
Q Consensus 215 ~~~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 75 -----l~v~~a~~~~ 84 (93)
T 2cqh_A 75 -----MEVDYSVSKK 84 (93)
T ss_dssp -----CEEEECCCCC
T ss_pred -----EEEEEccCcc
Confidence 9999998643
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=127.18 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||.++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|++|++.|+|..|.++.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 90 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---------KGYSFVRFSTHESAAHAIVSVNGTTIEGHV-- 90 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHcCCCEECCcE--
Confidence 456789999999999999999999999999999999752 569999999999999999999999999988
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 91 ---l~v~~a~~~~ 100 (109)
T 1x4g_A 91 ---VKCYWGKESP 100 (109)
T ss_dssp ---CEEECCCCCC
T ss_pred ---EEEEecCCCC
Confidence 9999998643
No 119
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=6.5e-18 Score=126.75 Aligned_cols=76 Identities=21% Similarity=0.350 Sum_probs=70.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
++|||+|||.++|+++|+++|++||+|++|+++.+ ++|||||+|.+.++|++|++.|+|..+.++. |
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-----l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSR-----V 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCC-----C
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------CCCEEEEEECCHHHHHHHHHHHCCCeECCcE-----E
Confidence 58999999999999999999999999999999752 5679999999999999999999999999998 9
Q ss_pred EEEeecCCC
Q 026189 221 KIQFAHFPF 229 (242)
Q Consensus 221 rV~~ar~~~ 229 (242)
+|+|++...
T Consensus 68 ~V~~a~~~~ 76 (101)
T 2hvz_A 68 RVELSTGMP 76 (101)
T ss_dssp EEEESSSCC
T ss_pred EEEEccCCC
Confidence 999998644
No 120
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=8.1e-18 Score=130.71 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVG---YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~---i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
....++|||+|||+++|+++|+++|++||. |.+|+|+.+. . ++++|||||+|.+.++|++|++ +++..|.++
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~---~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR---E-GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS---S-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC---C-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 456789999999999999999999999999 8999998743 3 5899999999999999999998 999999999
Q ss_pred CCCCCceEEEeec
Q 026189 214 KPDSPTLKIQFAH 226 (242)
Q Consensus 214 ~~~~~~LrV~~ar 226 (242)
. |+|.++.
T Consensus 89 ~-----i~V~~a~ 96 (118)
T 2db1_A 89 Y-----IEVFKSH 96 (118)
T ss_dssp E-----EEEEEEC
T ss_pred E-----EEEEECC
Confidence 8 9999985
No 121
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=125.22 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE-IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~-vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
....++|||+|||+++|+++|+++|++||.|.+ |+|+.+ .+ ++++|||||+|.+.++|++|++. ++..+.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~---~~-g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~- 85 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD---FQ-GRSTGEAFVQFASQEIAEKALKK-HKERIGHRY- 85 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC---SS-SCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC---CC-CCcceEEEEEECCHHHHHHHHHh-CcchhCCcE-
Confidence 456789999999999999999999999999987 777764 22 58999999999999999999987 999999998
Q ss_pred CCCceEEEeecC
Q 026189 216 DSPTLKIQFAHF 227 (242)
Q Consensus 216 ~~~~LrV~~ar~ 227 (242)
|+|.++..
T Consensus 86 ----i~v~~~~~ 93 (104)
T 1wg5_A 86 ----IEIFKSSR 93 (104)
T ss_dssp ----CEEEEECT
T ss_pred ----EEEEECCH
Confidence 99999864
No 122
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.5e-18 Score=129.79 Aligned_cols=81 Identities=12% Similarity=0.236 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCe-EEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGY-REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i-~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
..+.++|||+|||+++|+++|+++|++||.| ..|+|+.+. + ++++|||||+|.+.++|++|++. ++..|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~---~-g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~- 85 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN---N-GQGLGQALVQFKNEDDARKSERL-HRKKLNGRE- 85 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT---T-SSCSSCEEEECSSHHHHHHHGGG-CSEEETTEE-
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC---C-CCcceEEEEEECCHHHHHHHHHh-CCCccCCeE-
Confidence 4567899999999999999999999999999 889998743 3 58999999999999999999977 999999998
Q ss_pred CCCceEEEeecC
Q 026189 216 DSPTLKIQFAHF 227 (242)
Q Consensus 216 ~~~~LrV~~ar~ 227 (242)
|+|.|+..
T Consensus 86 ----i~v~~a~~ 93 (114)
T 2cpy_A 86 ----AFVHVVTL 93 (114)
T ss_dssp ----EEEEEECH
T ss_pred ----EEEEECCH
Confidence 99999974
No 123
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.2e-18 Score=127.90 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=70.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
++|||+|||.++++++|+++|++||.|++|+++.+ +..++++|||||+|.+.+ |++|++.|+|..+.|+. |
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~-----l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYD---RETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT-----I 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCC---SSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS-----C
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEc---CCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE-----E
Confidence 58999999999999999999999999999999863 223588999999999999 99999999999999998 9
Q ss_pred EEEeecCCC
Q 026189 221 KIQFAHFPF 229 (242)
Q Consensus 221 rV~~ar~~~ 229 (242)
+|+||....
T Consensus 73 ~V~~a~~~~ 81 (90)
T 2ki2_A 73 RVTEANPKK 81 (90)
T ss_dssp SEEEC----
T ss_pred EEEEcCCCC
Confidence 999998643
No 124
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=3.6e-18 Score=123.50 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=65.9
Q ss_pred CCEEEEcCCCCCC------CHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 140 SNLLFVDGLPTDC------TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 140 ~~tLfVgnLp~~~------te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
+++|||+|||.++ ++++|+++|++||.|.+|++.. .+ ++++|||||+|.+.++|++|++.|||..+.++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~----~~-g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE----ED-GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC----BT-TBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC----CC-CcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 4799999999999 7799999999999999999862 22 58999999999999999999999999999998
Q ss_pred -CCCCCceEE
Q 026189 214 -KPDSPTLKI 222 (242)
Q Consensus 214 -~~~~~~LrV 222 (242)
. |+|
T Consensus 76 ~~-----l~V 80 (81)
T 2krb_A 76 HT-----FRV 80 (81)
T ss_dssp SC-----CCC
T ss_pred ee-----EEe
Confidence 6 765
No 125
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=8.1e-18 Score=125.35 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
.+.-|||+||++.+||++|+++|.+||+|++++++ .++|||||+|.++++|++|++.||+.++.+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~---------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~---- 72 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY---------LNQGIALCKYTTREEANKAQMALNNCVLANTT---- 72 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHTTEEETTEE----
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc---------CCCcEEEEEECCHHHHHHHHHHhcCCEECCcE----
Confidence 46789999999999999999999999999999996 35789999999999999999999999999998
Q ss_pred ceEEEeec
Q 026189 219 TLKIQFAH 226 (242)
Q Consensus 219 ~LrV~~ar 226 (242)
|+|++|.
T Consensus 73 -I~V~~A~ 79 (89)
T 2wbr_A 73 -IFAESPS 79 (89)
T ss_dssp -EEEECCC
T ss_pred -EEEEECC
Confidence 9999984
No 126
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.4e-17 Score=133.65 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..+.++.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 139 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--------PPGFAFVEFEDPRDAADAVRELDGRTLCGCR-- 139 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--------CCcEEEEEECCHHHHHHHHHHcCCCEECCeE--
Confidence 456789999999999999999999999999999999752 4679999999999999999999999999988
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 140 ---l~v~~a~~~~ 149 (150)
T 2i2y_A 140 ---VRVELSNGEK 149 (150)
T ss_dssp ---CEEEECCCCC
T ss_pred ---EEEEEcCCCC
Confidence 9999998653
No 127
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=128.58 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||+++++++|+++|++||.|.+|+|+ +++|||||+|.+.++|++|++.|||+.+.++.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~--- 75 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVP--- 75 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE---
Confidence 346799999999999999999999999999999885 34579999999999999999999999999988
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 76 --l~V~~a~~ 83 (111)
T 1whx_A 76 --LYLEWAPI 83 (111)
T ss_dssp --CEEEEEET
T ss_pred --EEEEECCC
Confidence 99999985
No 128
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.72 E-value=8.2e-18 Score=145.28 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFV--GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG--~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..++|||+|||+++|+++|+++|++|| .|++|+|+.+ +..++++|||||+|.+.++|++||+.|++..|.+++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d---~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~-- 141 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFEN---RANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN-- 141 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEEC---TTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC--
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEec---CCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE--
Confidence 567999999999999999999999999 9999999984 333699999999999999999999999999999998
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
|+|+|++
T Consensus 142 ---l~V~~a~ 148 (229)
T 3q2s_C 142 ---PVVTPVN 148 (229)
T ss_dssp ---CEEEECC
T ss_pred ---eEEEECC
Confidence 9999985
No 129
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=2e-17 Score=136.47 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC--CCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD--KKP 215 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g--~~~ 215 (242)
....+|||+||++.+|+++|+++|++||+|++|+|+.+ +++|||||+|++.++|++|++.|||..|.+ ++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-------~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~- 115 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT- 115 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-------SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSC-
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-------CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcE-
Confidence 34568999999999999999999999999999999752 346799999999999999999999999976 66
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 116 ----L~V~~Ak~~ 124 (164)
T 1sjr_A 116 ----LRIDFSKLT 124 (164)
T ss_dssp ----EEEEECSSS
T ss_pred ----EEEEEecCC
Confidence 999999864
No 130
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.2e-17 Score=120.41 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|| ++|+++|+++|++||+|++|+|. +++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~-- 78 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQ-- 78 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEE--
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeE--
Confidence 456789999996 89999999999999999999983 45679999999999999999999999999988
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 79 ---l~v~~a~~~~ 88 (97)
T 1x5p_A 79 ---LKVNIARKQP 88 (97)
T ss_dssp ---EEEECCSSCC
T ss_pred ---EEEEECCCCC
Confidence 9999998644
No 131
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=123.31 Aligned_cols=80 Identities=14% Similarity=0.275 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||.++++++|+++|++||.|..+ . .. ++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~-~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 82 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---S-QD----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS-- 82 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---E-ET----TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---C-CC----CCcceEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 4567899999999999999999999999987665 1 11 588999999999999999999999999999998
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 83 ---l~v~~a~~~~ 92 (96)
T 1fjc_A 83 ---VSLYYTGEKG 92 (96)
T ss_dssp ---EEEEECSSSC
T ss_pred ---EEEEEcCCCC
Confidence 9999997644
No 132
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=2.4e-17 Score=127.35 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=67.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++++++|+++|++||+|++|+|+.+ |||||+|++.++|++|++.|||++|.+++-.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 345689999999999999999999999999999999641 5999999999999999999999999998633
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
...|+|..++.
T Consensus 83 ~~~i~v~~~~~ 93 (115)
T 3beg_B 83 TAYIRVKVDGP 93 (115)
T ss_dssp CCBCEEEECC-
T ss_pred eEEEEeccCCC
Confidence 33466766654
No 133
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.3e-19 Score=136.24 Aligned_cols=85 Identities=27% Similarity=0.436 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE--------EEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCc
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYRE--------IRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 208 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~--------vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~ 208 (242)
..+.++|||+|||.++++++|+++|++||.|.+ |+|+.+ +..++++|||||+|.+.++|++|++.|+|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTD---RETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 356789999999999999999999999999998 888763 223588999999999999999999999999
Q ss_pred eeCCCCCCCCceEEEeecCCC
Q 026189 209 KFDDKKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 209 ~i~g~~~~~~~LrV~~ar~~~ 229 (242)
.+.++. |+|+|++...
T Consensus 81 ~~~g~~-----l~V~~a~~~~ 96 (116)
T 2lcw_A 81 EFSGNP-----IKVSFATRRA 96 (116)
Confidence 999998 9999998643
No 134
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.6e-17 Score=132.96 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVG---YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~---i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
....++|||+|||+++|+++|+++|++||. |.+|+|+.+ +. ++++|||||+|.+.++|++|++ |++..|.++
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d---~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYT---RE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEEC---SS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEEC---CC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 356789999999999999999999999999 889999884 33 5999999999999999999998 999999999
Q ss_pred CCCCCceEEEeec
Q 026189 214 KPDSPTLKIQFAH 226 (242)
Q Consensus 214 ~~~~~~LrV~~ar 226 (242)
. |+|.++.
T Consensus 116 ~-----i~V~~a~ 123 (136)
T 2hgl_A 116 Y-----IEVFKSH 123 (136)
T ss_dssp E-----EEEEECC
T ss_pred E-----EEEEECC
Confidence 8 9999985
No 135
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=2.8e-18 Score=128.74 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++|+++|+++|++||.|.. +++.+ +..++++|||||+|.+.++|++|++ |+|..|.++.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~---~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~-- 86 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVD---VRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNE-- 86 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCE---EEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEec---CCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcE--
Confidence 345789999999999999999999999999877 44432 1125889999999999999999998 9999999998
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 87 ---l~V~~a~~~~ 96 (101)
T 1fj7_A 87 ---IKLEKPKGRD 96 (101)
T ss_dssp ---CEEECCSCCC
T ss_pred ---EEEEEcCCCC
Confidence 9999998644
No 136
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1e-16 Score=126.62 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccE-EEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 142 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVL-CFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 142 tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGf-aFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
.|||+||++.+|+++|+++|++||+|++|+|+.+ + || |||+|.+.++|+.|+++|||..|.++. ..|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~-----Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~---~~l 94 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----N-----GIQAMVEFESVLCAQKAKAALNGADIYAGC---CTL 94 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----S-----SEEEEEEESSHHHHHHHHHHHTTCCCBTTB---SEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----C-----CCEEEEEECCHHHHHHHHHHhCCCEecCCC---eEE
Confidence 5789999999999999999999999999999641 1 56 999999999999999999999998741 139
Q ss_pred EEEeecCC
Q 026189 221 KIQFAHFP 228 (242)
Q Consensus 221 rV~~ar~~ 228 (242)
+|+||+..
T Consensus 95 ~V~~Ak~~ 102 (124)
T 2e5i_A 95 KIEYARPT 102 (124)
T ss_dssp EEECCSCS
T ss_pred EEEEecCC
Confidence 99999864
No 137
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=3.9e-17 Score=129.98 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccE-EEEEeCCHHHHHHHHHHHCCceeCC--CCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVL-CFVEFDDPKCARTAMDALHGYKFDD--KKP 215 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGf-aFV~F~~~~~Ae~A~~~L~G~~i~g--~~~ 215 (242)
..-+|||+||++.+|+++|+++|++||+|.+|+++.+ .+|| |||+|.+.++|++|++.|||..|.+ +.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--------~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~- 97 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--------NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT- 97 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--------TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE-
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--------CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE-
Confidence 3347889999999999999999999999999998752 3467 9999999999999999999999988 55
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 98 ----LrI~~ak~~ 106 (130)
T 3zzy_A 98 ----LRIDFSKLT 106 (130)
T ss_dssp ----EEEEECSCS
T ss_pred ----EEEEecCCC
Confidence 999999864
No 138
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=4.5e-17 Score=137.77 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++||++|+++|++||+|++|+|+.+ +..++++|||||+|.+.++|++|++.+++..+.++.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~-- 86 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD---MITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP-- 86 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecc---cCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc--
Confidence 456789999999999999999999999999999999984 233689999999999999999999999999999988
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|++.++...
T Consensus 87 ---i~~~~~~~~ 95 (213)
T 4f02_A 87 ---VRIMWSQRD 95 (213)
T ss_dssp ---CEEEECCCC
T ss_pred ---ccccccccc
Confidence 999998753
No 139
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=2.5e-17 Score=120.98 Aligned_cols=75 Identities=27% Similarity=0.400 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||+++++++|+++|++| +|++|++. +++|||||+|.+.++|++|++.|+|..+.+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~--- 69 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD--- 69 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcE---
Confidence 356899999999999999999999999 99999883 56789999999999999999999999999998
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|+|+..
T Consensus 70 --l~V~~a~~ 77 (88)
T 1wg1_A 70 --LIVQLQPT 77 (88)
T ss_dssp --EEEEECCC
T ss_pred --EEEEEcCC
Confidence 99999975
No 140
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=131.01 Aligned_cols=82 Identities=20% Similarity=0.373 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEE--------EEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCc
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREI--------RVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 208 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~v--------rlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~ 208 (242)
..++++|||+|||+++|+++|+++|++||.|..| ++.. + ++++|||||+|.+.++|++|++.|||+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-----~-g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-----E-GRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-----E-TTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-----C-CCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 4677899999999999999999999999998763 3322 1 588999999999999999999999999
Q ss_pred eeCCCCCCCCceEEEeecCCC
Q 026189 209 KFDDKKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 209 ~i~g~~~~~~~LrV~~ar~~~ 229 (242)
.|.++. |+|+|++...
T Consensus 116 ~~~g~~-----l~V~~a~~~~ 131 (143)
T 3egn_A 116 VLFGKP-----MVVQFARSAR 131 (143)
T ss_dssp EETTEE-----CEEEECCCSC
T ss_pred EeCCcE-----EEEEECCCCC
Confidence 999988 9999998644
No 141
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=125.66 Aligned_cols=78 Identities=14% Similarity=0.228 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
....+|||+|||+++|+++|+++|++| .|.+|+|+.+ +. |+++|||||+|.+.++|++|+ .+++..|.++.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d---~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~--- 84 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKD---HV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY--- 84 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCC---TT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEEC---CC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE---
Confidence 345799999999999999999999999 8999999874 33 589999999999999999999 79999999998
Q ss_pred CceEEEeec
Q 026189 218 PTLKIQFAH 226 (242)
Q Consensus 218 ~~LrV~~ar 226 (242)
|+|..+.
T Consensus 85 --i~V~~a~ 91 (109)
T 2dnn_A 85 --VEVSPAT 91 (109)
T ss_dssp --EEEEECC
T ss_pred --EEEEECC
Confidence 9998875
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=4.7e-17 Score=135.33 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
...+++|||+|||+++++++|+++|++||.|++|+|+.+. + ++++|||||+|.+.++|++|++.|+|..|.++.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~---~-g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~-- 158 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR---S-GRSLGTADVHFERRADALKAMKQYKGVPLDGRP-- 158 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT---T-SSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---C-CCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE--
Confidence 4567899999999999999999999999999999998743 2 589999999999999999999999999999988
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|+|+...
T Consensus 159 ---l~V~~a~~~ 167 (177)
T 2f3j_A 159 ---MDIQLVASQ 167 (177)
T ss_dssp ---CEEEEESSG
T ss_pred ---EEEEEecCC
Confidence 999999753
No 143
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=2.1e-17 Score=125.87 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCC---eEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVG---YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~---i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
....++|||+|||+++|+++|+++|++||. |.+|+|+.+ +. |+++|||||+|.+.++|++|++ +++..+.++
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~---~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLN---RD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCC---TT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEEC---CC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 456789999999999999999999999988 899999864 33 5899999999999999999998 999999998
Q ss_pred CCCCCceEEEeecC
Q 026189 214 KPDSPTLKIQFAHF 227 (242)
Q Consensus 214 ~~~~~~LrV~~ar~ 227 (242)
. |+|.++..
T Consensus 83 ~-----i~V~~a~~ 91 (107)
T 2lmi_A 83 Y-----VEVYEINN 91 (107)
T ss_dssp C-----CCCEECCH
T ss_pred E-----EEEEECCH
Confidence 8 99999863
No 144
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=8.1e-18 Score=119.29 Aligned_cols=75 Identities=20% Similarity=0.368 Sum_probs=67.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceE
Q 026189 142 LLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLK 221 (242)
Q Consensus 142 tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~Lr 221 (242)
+|||+|||.++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++. ++..+.|+. |+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~-----l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD---NKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSK-----CE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCS---CCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBC-----CC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEE-----EE
Confidence 6999999999999999999999999999998763 23358999999999999999999974 999999998 99
Q ss_pred EEee
Q 026189 222 IQFA 225 (242)
Q Consensus 222 V~~a 225 (242)
|++|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9886
No 145
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.1e-16 Score=126.15 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||.++++++|+++|++||.|.+++++.+ ...++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 158 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD---MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP-- 158 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEEC---TTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEec---CCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE--
Confidence 456789999999999999999999999999999999874 223689999999999999999999999999999988
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
|+|+||+
T Consensus 159 ---i~v~~a~ 165 (166)
T 3md3_A 159 ---LRINWAA 165 (166)
T ss_dssp ---CEEEESC
T ss_pred ---EEEEecC
Confidence 9999996
No 146
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.2e-17 Score=126.53 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=70.6
Q ss_pred CCCCCEEEE--cCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCcee----
Q 026189 137 KGESNLLFV--DGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKF---- 210 (242)
Q Consensus 137 ~~~~~tLfV--gnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i---- 210 (242)
..++++||| +||+++++|++|+++|++||.|.+|.++. .+|||||+|.+.++|++|++.|||.++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 456789999 88999999999999999999999987742 257999999999999999999999998
Q ss_pred -CCCCCCCCceEEEeecC-CCCCCC
Q 026189 211 -DDKKPDSPTLKIQFAHF-PFHLPS 233 (242)
Q Consensus 211 -~g~~~~~~~LrV~~ar~-~~~~~~ 233 (242)
.++. |.|.|++. |...|+
T Consensus 93 g~g~~-----l~v~~a~~~p~~~~~ 112 (114)
T 2cq2_A 93 GQKIT-----LYLNFVEKVQWSGPS 112 (114)
T ss_dssp SCEEE-----CEEEEESCCCCSSCC
T ss_pred CCCcE-----EEEEecccCcccCCC
Confidence 4444 99999975 444443
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.8e-17 Score=119.02 Aligned_cols=80 Identities=16% Similarity=0.274 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEE-EEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIR-VIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vr-lv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
....++|||+|||+++++++|+++|++||.|++|+ ++.+ +..+.|||+|.+.++|++|++.|+|..+.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~-------~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~- 83 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD-------SETAVVNVTYSSKDQARQALDKLNGFQLENFT- 83 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS-------SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB-
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC-------CCCCEEEEEECCHHHHHHHHHHhCCCEECCcE-
Confidence 35578999999999999999999999999999995 6542 22235999999999999999999999999988
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 84 ----l~V~~a~~~ 92 (96)
T 2e44_A 84 ----LKVAYIPDE 92 (96)
T ss_dssp ----CEEEECCCC
T ss_pred ----EEEEEcCcc
Confidence 999999754
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.8e-16 Score=126.63 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=74.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCc
Q 026189 140 SNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPT 219 (242)
Q Consensus 140 ~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~ 219 (242)
+++|||+|||.++++++|+++|++||+|.+|+++.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~---~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~----- 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD---KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT----- 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE-----
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce-----
Confidence 589999999999999999999999999999999884 222589999999999999999999999999999988
Q ss_pred eEEEeecCC
Q 026189 220 LKIQFAHFP 228 (242)
Q Consensus 220 LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 74 l~v~~~~~~ 82 (167)
T 1fxl_A 74 IKVSYARPS 82 (167)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999999854
No 149
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.3e-16 Score=128.01 Aligned_cols=83 Identities=27% Similarity=0.384 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
++++|||+|||.++++++|+++|++||+|.+|+++.+. ..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~---- 74 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY---KTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR---- 74 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET---TTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE----
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeC---CCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE----
Confidence 46899999999999999999999999999999998742 22589999999999999999999999999999988
Q ss_pred ceEEEeecCCC
Q 026189 219 TLKIQFAHFPF 229 (242)
Q Consensus 219 ~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 75 -l~v~~~~~~~ 84 (168)
T 1b7f_A 75 -LKVSYARPGG 84 (168)
T ss_dssp -CEEEECCCCS
T ss_pred -EEEEecCCCc
Confidence 9999998644
No 150
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=2.3e-17 Score=123.90 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++++++|+++|++||.|.+|+++.+. + ++++|||||+|.+.++|++|++ ++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~-g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~-- 77 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR---T-GVSKGYGFVSFYNDVDVQKIVE--SQINFHGKK-- 77 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT---T-SCEEEEEEEEESSCCCHHHHTT--CCCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC---C-CCccceEEEEECCHHHHHHHHh--CCCeECCEE--
Confidence 4566899999999999999999999999999999999853 3 6899999999999999999998 999999988
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|.++..
T Consensus 78 ---l~v~~a~~ 85 (102)
T 2xs2_A 78 ---LKLGPAIR 85 (102)
T ss_dssp ---CEEEEEEE
T ss_pred ---EEEEECCc
Confidence 99999974
No 151
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=3e-16 Score=131.05 Aligned_cols=84 Identities=14% Similarity=0.310 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||.++++++|+++|++||.|++|+++.+. ..++++|||||+|.+.++|++|++.|||..|.++.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~--- 196 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP---TTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY--- 196 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB---
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC---CCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE---
Confidence 456899999999999999999999999999999998842 23689999999999999999999999999999998
Q ss_pred CceEEEeecCCC
Q 026189 218 PTLKIQFAHFPF 229 (242)
Q Consensus 218 ~~LrV~~ar~~~ 229 (242)
|+|+|++.+.
T Consensus 197 --i~V~~a~~~~ 206 (216)
T 2qfj_A 197 --LRVGKAVTPP 206 (216)
T ss_dssp --CEEEECSSCS
T ss_pred --EEEEEecCCC
Confidence 9999998754
No 152
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.7e-17 Score=133.36 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++||+||+++|++|| |++|+|+.+ +. ++++|||||+|++.++|++|+ .+++..|.++.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d---~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~-- 114 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIG---PD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRY-- 114 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCS---SS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCC--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEEC---CC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEE--
Confidence 34568999999999999999999999999 779999874 33 589999999999999999999 89999999998
Q ss_pred CCceEEEeecCCCC
Q 026189 217 SPTLKIQFAHFPFH 230 (242)
Q Consensus 217 ~~~LrV~~ar~~~~ 230 (242)
|+|.++.....
T Consensus 115 ---i~V~~a~~~~~ 125 (139)
T 2hgn_A 115 ---IELFLNSTTGA 125 (139)
T ss_dssp ---CCCEECCCSCC
T ss_pred ---EEEEECCCCCC
Confidence 99999876443
No 153
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.67 E-value=1.5e-16 Score=124.34 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..++++|||+|| ++|+++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~-- 102 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQ-- 102 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB--
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 456789999996 79999999999999999999985 45679999999999999999999999999988
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 103 ---l~V~~a~~~~ 112 (121)
T 2bz2_A 103 ---LKVNIARKQP 112 (121)
T ss_dssp ---CEEEECCSSC
T ss_pred ---EEEEEeCCCC
Confidence 9999998653
No 154
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=2.1e-16 Score=134.01 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 138 GESNLLFVDGLP-TDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 138 ~~~~tLfVgnLp-~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
.++++|||+||| +.+++++|+++|++||.|.+|+++. ..+|||||+|.+.++|++|++.|||..+.++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~-- 71 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK--------SKPGAAMVEMADGYAVDRAITHLNNNFMFGQK-- 71 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT--------TSTTCEEEEESSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCce--
Confidence 357899999999 8999999999999999999999975 23579999999999999999999999999998
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|.|++..
T Consensus 72 ---l~v~~s~~~ 80 (205)
T 3tyt_A 72 ---MNVCVSKQP 80 (205)
T ss_dssp ---CEEEECSCS
T ss_pred ---EEEEEccCC
Confidence 999999854
No 155
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=2e-16 Score=127.58 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||.++|+++|+++|++||.|.+|+++.+. + ++++|||||+|.+.++|++|++.|||..+.+..
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~---~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~-- 165 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP---D-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGC-- 165 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---T-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTC--
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC---C-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCC--
Confidence 3467899999999999999999999999999999998753 3 589999999999999999999999999887521
Q ss_pred CCceEEEeec
Q 026189 217 SPTLKIQFAH 226 (242)
Q Consensus 217 ~~~LrV~~ar 226 (242)
..+|+|+||.
T Consensus 166 ~~~l~V~~ad 175 (175)
T 3nmr_A 166 SSPMVVKFAD 175 (175)
T ss_dssp SSCCEEEECC
T ss_pred CCCeEEEecC
Confidence 1239999983
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=2.4e-16 Score=127.13 Aligned_cols=81 Identities=25% Similarity=0.408 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||.++++++|+++|++||.|.+|+++.+. ..++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 165 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS---ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK--- 165 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT---TTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE---
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE---
Confidence 457899999999999999999999999999999998742 22689999999999999999999999999999998
Q ss_pred CceEEEeec
Q 026189 218 PTLKIQFAH 226 (242)
Q Consensus 218 ~~LrV~~ar 226 (242)
|+|+||.
T Consensus 166 --l~V~~As 172 (172)
T 2g4b_A 166 --LLVQRAS 172 (172)
T ss_dssp --CEEEECC
T ss_pred --EEEEeCC
Confidence 9999973
No 157
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.66 E-value=2.7e-16 Score=147.75 Aligned_cols=83 Identities=16% Similarity=0.298 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
..+.++|||+|||+++|+++|+++|++||.|+.|.|+.+ +..++++|||||+|.+.++|++||+.|||..|.++.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d---~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~-- 173 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYS---KRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR-- 173 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeecc---CCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE--
Confidence 456789999999999999999999999999999999874 223689999999999999999999999999999998
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 174 ---i~V~~a~~ 181 (437)
T 3pgw_S 174 ---VLVDVERG 181 (437)
T ss_pred ---EEEEEeCC
Confidence 99999974
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=116.09 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||+++|+++|+++|++||.|.+| +.. ..+ ++ ||||+|.+.++|++|++ |+|..|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~---~~~-g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~--- 73 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMD---KDK-GV---FAIVEMGDVGAREAVLS-QSQHSLGGHR--- 73 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EEC---SSS-CC---EEEEEESSHHHHHHHHT-CSCCEETTEE---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEc---CCC-Cc---EEEEEECCHHHHHHHHh-cCCeEECCEE---
Confidence 456899999999999999999999999999988 332 122 23 99999999999999999 9999999998
Q ss_pred CceEEEeecCC
Q 026189 218 PTLKIQFAHFP 228 (242)
Q Consensus 218 ~~LrV~~ar~~ 228 (242)
|+|+++...
T Consensus 74 --l~V~~a~~~ 82 (94)
T 2e5g_A 74 --LRVRPREQK 82 (94)
T ss_dssp --CCCBCSCCS
T ss_pred --EEEEECCcC
Confidence 999998753
No 159
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=4.9e-16 Score=135.74 Aligned_cols=82 Identities=22% Similarity=0.400 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVS----HLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~----~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
..++++|||+|||+++|+++|+ ++|++||.|++|+++. + ++++|||||+|.+.++|++|++.|||..|.+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-----~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-----S-LKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-----C-CCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 4678999999999999999977 8999999999999864 2 5789999999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCC
Q 026189 213 KKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 213 ~~~~~~~LrV~~ar~~~ 229 (242)
+. |+|+|++...
T Consensus 80 ~~-----l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KP-----MRIQYAKTDS 91 (282)
T ss_pred cE-----EEEEEeccCc
Confidence 88 9999997643
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=3.1e-16 Score=132.58 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..++|||+|||+++|+++|+++|++||.|++|+|+.++ +.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-----~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~---- 172 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK---- 172 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE----
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-----CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE----
Confidence 45799999999999999999999999999999998753 257899999999999999999999999999998
Q ss_pred ceEEEeecC
Q 026189 219 TLKIQFAHF 227 (242)
Q Consensus 219 ~LrV~~ar~ 227 (242)
|+|+||+.
T Consensus 173 -i~V~~a~~ 180 (213)
T 4f02_A 173 -VFVGRFKS 180 (213)
T ss_dssp -CEEEECCC
T ss_pred -EEEEEcCC
Confidence 99999974
No 161
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.66 E-value=8.9e-16 Score=126.50 Aligned_cols=85 Identities=24% Similarity=0.380 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||.++++++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-- 185 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD---SATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK-- 185 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC---TTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec---CCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE--
Confidence 356789999999999999999999999999999999874 223589999999999999999999999999999988
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|+|++...
T Consensus 186 ---l~v~~a~~~~ 195 (198)
T 2yh0_A 186 ---LLVQRASVGA 195 (198)
T ss_dssp ---CEEEESCCCC
T ss_pred ---EEEEECCCCC
Confidence 9999998643
No 162
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.7e-16 Score=124.73 Aligned_cols=80 Identities=20% Similarity=0.363 Sum_probs=73.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
++|||+|||.++|+++|+++|++||.|.+|+++.+. . ++++|||||+|.+.++|++|++.|+|..+.++. |
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-----i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK---N-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNI-----V 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC---C--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE-----C
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC---C-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe-----e
Confidence 589999999999999999999999999999998743 3 478999999999999999999999999999988 9
Q ss_pred EEEeecCCC
Q 026189 221 KIQFAHFPF 229 (242)
Q Consensus 221 rV~~ar~~~ 229 (242)
+|+|+....
T Consensus 72 ~v~~~~~~~ 80 (166)
T 3md3_A 72 KINWAFQSQ 80 (166)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999997654
No 163
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=2.7e-16 Score=116.33 Aligned_cols=74 Identities=22% Similarity=0.285 Sum_probs=61.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC--CCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD--DKK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~--g~~ 214 (242)
..+.++|||+|||+++||++|+++|++||.|++|+|+. +++|||||+|.+.++|++ +++..+. +++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--------~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--------PFRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--------SCCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--------CCCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 56778999999999999999999999999999999975 367899999999999883 5666654 655
Q ss_pred CCCCceEEEeecC
Q 026189 215 PDSPTLKIQFAHF 227 (242)
Q Consensus 215 ~~~~~LrV~~ar~ 227 (242)
|+|.+++.
T Consensus 76 -----v~v~~a~~ 83 (89)
T 3d2w_A 76 -----VHISNAEP 83 (89)
T ss_dssp -----EEEEECC-
T ss_pred -----EEEEEcCC
Confidence 88888874
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=1.3e-15 Score=122.10 Aligned_cols=81 Identities=19% Similarity=0.340 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC--CC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD--KK 214 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g--~~ 214 (242)
....++|||+|||.++++++|+++|++||.|.+++++.+. ..++++|||||+|.+.++|++|++.|||..+.+ +.
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 162 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK---LTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQP 162 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC---CCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeE
Confidence 3467899999999999999999999999999999998743 225889999999999999999999999999987 55
Q ss_pred CCCCceEEEee
Q 026189 215 PDSPTLKIQFA 225 (242)
Q Consensus 215 ~~~~~LrV~~a 225 (242)
|+|+||
T Consensus 163 -----l~V~~A 168 (168)
T 1b7f_A 163 -----LSVRLA 168 (168)
T ss_dssp -----CEEEEC
T ss_pred -----EEEEeC
Confidence 999986
No 165
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=2.2e-16 Score=124.88 Aligned_cols=78 Identities=18% Similarity=0.349 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeE--EEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYR--EIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~--~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
...++|||+|||+++||++|+++|++| +|+ +|+|+.+ +. |+++|||||+|.+.++|++|++. ++..|.++.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d---~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~- 112 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVD---PE-GKITGEAFVQFASQELAEKALGK-HKERIGHRY- 112 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCC---SS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEEC---CC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEE-
Confidence 456899999999999999999999999 788 8988864 33 58999999999999999999974 779999988
Q ss_pred CCCceEEEeec
Q 026189 216 DSPTLKIQFAH 226 (242)
Q Consensus 216 ~~~~LrV~~ar 226 (242)
|+|..+.
T Consensus 113 ----I~V~~a~ 119 (126)
T 2hgm_A 113 ----IEVFKSS 119 (126)
T ss_dssp ----CCCEEEC
T ss_pred ----EEEEECC
Confidence 9998874
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=4.5e-16 Score=128.08 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 136 KKGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 136 ~~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.....++|||+|||+++|+++|+++|++||.|.+|+|+.+ +..++++|||||+|.+.++|++|++. ++..+.++.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~- 83 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRD---PNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRV- 83 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEE-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEc---CCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEE-
Confidence 3467789999999999999999999999999999999884 33368999999999999999999966 999999988
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|.++...
T Consensus 84 ----l~v~~~~~~ 92 (196)
T 1l3k_A 84 ----VEPKRAVSR 92 (196)
T ss_dssp ----CEEEECCC-
T ss_pred ----eeeecccCc
Confidence 999999753
No 167
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=125.14 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCe----EEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGY----REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i----~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
....+|||+|||+++|+++|+++|++||.| .+|+|+.+ ++ |+++|||||+|.+.++|++|++. ++..+.++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d---~~-gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY---PD-GRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC---TT-SCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC---CC-CCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 456899999999999999999999999875 68999874 23 69999999999999999999976 99999988
Q ss_pred CCCCCceEEEeec
Q 026189 214 KPDSPTLKIQFAH 226 (242)
Q Consensus 214 ~~~~~~LrV~~ar 226 (242)
. |+|..+.
T Consensus 96 ~-----i~V~~a~ 103 (123)
T 2dha_A 96 Y-----IELFRST 103 (123)
T ss_dssp E-----ECCEEEC
T ss_pred E-----EEEEECC
Confidence 7 8888774
No 168
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-16 Score=116.41 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
..+++|||+|||+++++++|+++|++||.|++|+++. +++|||||+|.+.++|++|... ...+.+++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--------~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~--- 69 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK--------PFRAFAFVTFADDQIAQSLCGE--DLIIKGIS--- 69 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS--------SCCSCCEEECSCHHHHHHTTTC--EEEETTEE---
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec--------CCCCEEEEEECCHHHHHHHhcC--CceeCCEE---
Confidence 4568999999999999999999999999999999964 3567999999999999764321 23446666
Q ss_pred CceEEEeecCCC
Q 026189 218 PTLKIQFAHFPF 229 (242)
Q Consensus 218 ~~LrV~~ar~~~ 229 (242)
|+|.|++...
T Consensus 70 --l~v~~a~~~~ 79 (88)
T 1wf0_A 70 --VHISNAEPKH 79 (88)
T ss_dssp --EEEECCCCCC
T ss_pred --EEEEecCCCC
Confidence 9999987543
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=1.2e-15 Score=121.78 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||.++++++|+++|++||.|.+++++.+. ..++++|||||+|.+.++|++|++.|||..+.++.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--- 159 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ---VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT--- 159 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT---TTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS---
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC---CCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc---
Confidence 456899999999999999999999999999999998742 22588999999999999999999999999999864
Q ss_pred CceEEEee
Q 026189 218 PTLKIQFA 225 (242)
Q Consensus 218 ~~LrV~~a 225 (242)
.+|+|+||
T Consensus 160 ~~i~v~~A 167 (167)
T 1fxl_A 160 EPITVKFA 167 (167)
T ss_dssp SCCEEEEC
T ss_pred cceEEEeC
Confidence 35899986
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=3.4e-16 Score=113.75 Aligned_cols=72 Identities=24% Similarity=0.389 Sum_probs=65.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPF----V-------GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 206 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~f----G-------~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~ 206 (242)
.+.++|||+|||+++++++|+++|++| | .|.+|++.. ++|||||+|.+.++|++|+ .|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~---------~kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS---------SSSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC---------CCcEEEEEcCCHHHHHHHH-hcC
Confidence 456899999999999999999999999 8 899998853 3679999999999999999 999
Q ss_pred CceeCCCCCCCCceEEEe
Q 026189 207 GYKFDDKKPDSPTLKIQF 224 (242)
Q Consensus 207 G~~i~g~~~~~~~LrV~~ 224 (242)
|..+.++. |+|+.
T Consensus 74 g~~~~g~~-----l~V~r 86 (87)
T 2hzc_A 74 GIIFQGQS-----LKIRR 86 (87)
T ss_dssp TCEETTEE-----CEEEC
T ss_pred CCEECCeE-----EEEeC
Confidence 99999988 88874
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.1e-15 Score=125.82 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||.++|+++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++. ++..+.|+.
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~-- 174 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD---RGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHN-- 174 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEE--
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec---CCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEE--
Confidence 345689999999999999999999999999999999884 22358999999999999999999976 899999998
Q ss_pred CCceEEEeecCCC
Q 026189 217 SPTLKIQFAHFPF 229 (242)
Q Consensus 217 ~~~LrV~~ar~~~ 229 (242)
|+|.|+....
T Consensus 175 ---i~v~~a~~k~ 184 (196)
T 1l3k_A 175 ---CEVRKALSKQ 184 (196)
T ss_dssp ---CEEEECC---
T ss_pred ---EEEEecCChh
Confidence 9999997643
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1.6e-15 Score=122.16 Aligned_cols=87 Identities=23% Similarity=0.372 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..++|||+|||+++|+++|+++|++||.|.+|+++.+..... ++++|||||+|.+.++|++|++.|++..+.+.. ..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~--~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP-PQSKGCCFVTFYTRKAALEAQNALHNMKVLPGM--HH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS-CEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTC--SS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC-CCcceEEEEEECCHHHHHHHHHHhcCcEEccCC--cc
Confidence 467999999999999999999999999999999998543211 189999999999999999999999999887543 34
Q ss_pred ceEEEeecCC
Q 026189 219 TLKIQFAHFP 228 (242)
Q Consensus 219 ~LrV~~ar~~ 228 (242)
.+++.++...
T Consensus 79 ~~~~~~~~~~ 88 (175)
T 3nmr_A 79 PIQMKPADSE 88 (175)
T ss_dssp CCEEEECGGG
T ss_pred ceEEcccccc
Confidence 5888888754
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=114.28 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=65.0
Q ss_pred CCCCE-EEEcCCCCCCCHHH----HHHhhcCC-CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC
Q 026189 138 GESNL-LFVDGLPTDCTRRE----VSHLFRPF-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 211 (242)
Q Consensus 138 ~~~~t-LfVgnLp~~~te~e----L~~~F~~f-G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~ 211 (242)
+++.| |||+|||+.+++++ |+++|++| |+|++| . + |||||+|.+.++|++|++.|||..+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---t-------g---G~AfV~F~~~esA~~A~~~l~G~~l~ 72 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---T-------G---CSAILRFINQDSAERAQKRMENEDVF 72 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---C-------T---TCEEEEESSHHHHHHHHHHHTTCCSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---e-------c---CEEEEEECCHHHHHHHHHHhcCCccC
Confidence 44566 99999999999988 55899999 599887 1 2 69999999999999999999999999
Q ss_pred CCCCCCCceEEEeecCCC
Q 026189 212 DKKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 212 g~~~~~~~LrV~~ar~~~ 229 (242)
++. |+|+||+...
T Consensus 73 gr~-----i~v~~A~~~s 85 (96)
T 2diu_A 73 GNR-----IIVSFTPKNR 85 (96)
T ss_dssp SSC-----CEEESSCCSC
T ss_pred Cce-----EEEEecCCCc
Confidence 998 9999998643
No 174
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.5e-16 Score=119.26 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=57.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHH
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL 205 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L 205 (242)
...++|||+|||+++|+++|+++|++||.|. +.++.+...+..|+++|||||+|.+.++|++|++.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4568999999999999999999999999999 777664322222589999999999999999999998
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=1.2e-15 Score=127.32 Aligned_cols=83 Identities=14% Similarity=0.280 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||.++|+++|+++|++||.|++|+++.+. ..++++|||||+|.+.++|++|++.|++..+.++.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~---~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~--- 99 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS---VTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN--- 99 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC----CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC---
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC---CCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee---
Confidence 356899999999999999999999999999999998742 22588999999999999999999999999999998
Q ss_pred CceEEEeecCC
Q 026189 218 PTLKIQFAHFP 228 (242)
Q Consensus 218 ~~LrV~~ar~~ 228 (242)
|+|.++...
T Consensus 100 --l~v~~~~~~ 108 (216)
T 2qfj_A 100 --IKVGRPSNI 108 (216)
T ss_dssp --CEEECCSCC
T ss_pred --EEEecCCCc
Confidence 999988653
No 176
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1.1e-15 Score=133.38 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCC
Q 026189 137 KGESNLLFVDGLPTDC---------TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 207 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~---------te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G 207 (242)
...+++|||+||+.++ +|++|+++|++||+|++|+|+. ++|||||+|.+.++|+.|+++|+|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---------~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---------SKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---------CCCEEEEEeCCHHHHHHHHHHhCC
Confidence 5577899999999998 7999999999999999999973 467999999999999999999999
Q ss_pred cee------------CCCCCCCCceEEEeecCC
Q 026189 208 YKF------------DDKKPDSPTLKIQFAHFP 228 (242)
Q Consensus 208 ~~i------------~g~~~~~~~LrV~~ar~~ 228 (242)
..| .++. |+|.||+..
T Consensus 202 ~~l~~~~~~e~~~~~~gr~-----L~V~wA~~~ 229 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTG-----LLVKWANED 229 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCC-----CEEEECC--
T ss_pred CEEeccccccccccCCCCE-----EEEEEccCC
Confidence 999 6766 999999863
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=7.7e-16 Score=123.58 Aligned_cols=81 Identities=17% Similarity=0.326 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||.++++++|+++|++||.|.+|+++.+. ..++++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~---~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~--- 157 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK---DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK--- 157 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS---SSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSC---
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC---CCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeE---
Confidence 346799999999999999999999999999999998742 235899999999999999999997 8999999998
Q ss_pred CceEEEeecC
Q 026189 218 PTLKIQFAHF 227 (242)
Q Consensus 218 ~~LrV~~ar~ 227 (242)
|+|+||+.
T Consensus 158 --i~V~~a~p 165 (167)
T 2cjk_A 158 --IEIKRAEP 165 (167)
T ss_dssp --EEEEECCC
T ss_pred --EEEeecCC
Confidence 99999974
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=3.2e-15 Score=130.52 Aligned_cols=77 Identities=36% Similarity=0.673 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC-CCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD-DKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~-g~~~ 215 (242)
..++++|||+|||.++++++|+++|++||.|++|+++.+ + +|||||+|.+.++|++|++.|||+.|. ++.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~---~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~- 274 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG---R-----HDIAFVEFDNEVQAGAARDALQGFKITQNNA- 274 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC---C-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE-
Confidence 456789999999999999999999999999999999852 1 469999999999999999999999999 877
Q ss_pred CCCceEEEeec
Q 026189 216 DSPTLKIQFAH 226 (242)
Q Consensus 216 ~~~~LrV~~ar 226 (242)
|+|+|+|
T Consensus 275 ----l~v~~ak 281 (282)
T 3pgw_A 275 ----MKISFAK 281 (282)
T ss_pred ----EEEEEec
Confidence 9999997
No 179
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=4.6e-15 Score=126.70 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~-~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
..++++|||+|||+ ++++++|+++|++||.|++|+++.+ .+|||||+|.+.++|++|++.|+|..+.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~--------~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~- 101 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--------KKENALVQMADGNQAQLAMSHLNGHKLHGKP- 101 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT--------TSCCEEEEESCHHHHHHHHHHHTTCBCSSSB-
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC--------CCCEEEEEECCHHHHHHHHHHhCCCeECCeE-
Confidence 46788999999999 9999999999999999999999763 1569999999999999999999999999988
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 102 ----l~v~~a~~~ 110 (229)
T 2adc_A 102 ----IRITLSKHQ 110 (229)
T ss_dssp ----CEEECCSCC
T ss_pred ----EEEEEecCc
Confidence 999999854
No 180
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.9e-15 Score=120.02 Aligned_cols=80 Identities=9% Similarity=0.135 Sum_probs=69.9
Q ss_pred CEEEEcCC----CCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCC----HHH----HHHHHH--HHC
Q 026189 141 NLLFVDGL----PTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDD----PKC----ARTAMD--ALH 206 (242)
Q Consensus 141 ~tLfVgnL----p~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~----~~~----Ae~A~~--~L~ 206 (242)
++|||+|| |+.++|.+|+++|++||+|.+|+++.+ +.+|+++|||||+|.+ .++ |.+|++ .|+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~D---p~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFND---PNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEEC---TTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEec---CCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 999999999999999999999999984 4457999999999996 323 788888 789
Q ss_pred CceeCCCCCCCCceEEEeecCC
Q 026189 207 GYKFDDKKPDSPTLKIQFAHFP 228 (242)
Q Consensus 207 G~~i~g~~~~~~~LrV~~ar~~ 228 (242)
|..|+|++ |+|++-+..
T Consensus 80 g~~I~Gr~-----irV~ln~~g 96 (136)
T 2j8a_A 80 GCFIMGFK-----FEVILNKHS 96 (136)
T ss_dssp CEEETTEE-----EEEEECCTT
T ss_pred CCeecCcE-----EEEEECccc
Confidence 99999998 999987653
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=9.2e-15 Score=111.75 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 138 GESNLLFVDGLPT-----DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 138 ~~~~tLfVgnLp~-----~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
.++++|+|.||.. +-++++|+++|++||.|.+|+|+.+. ..+++++||+||+|.+.++|++|++.|||..+.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~--~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIP--GAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECS--SCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCC--CCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4678999999973 23789999999999999999998742 2225789999999999999999999999999999
Q ss_pred CCCCCCceEEEeecC
Q 026189 213 KKPDSPTLKIQFAHF 227 (242)
Q Consensus 213 ~~~~~~~LrV~~ar~ 227 (242)
+. |+|+|+..
T Consensus 84 r~-----i~v~~a~~ 93 (105)
T 2pe8_A 84 RV-----VKACFYNL 93 (105)
T ss_dssp EE-----CEEEECCH
T ss_pred cE-----EEEEEcCH
Confidence 98 99999963
No 182
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=6.2e-15 Score=123.98 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
..++|||+|||+++|+++|+++|++||.|.+|+|..+. + ++++|||||+|++.++|++|++.++ ..+.|+.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~---- 178 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL---H-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETD---- 178 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT---T-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEE----
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC---C-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEE----
Confidence 35799999999999999999999999999999998743 3 5899999999999999999996654 5999998
Q ss_pred ceEEEeecCCC
Q 026189 219 TLKIQFAHFPF 229 (242)
Q Consensus 219 ~LrV~~ar~~~ 229 (242)
|+|.|++...
T Consensus 179 -l~V~~~~~y~ 188 (193)
T 2voo_A 179 -LLILFKDDYF 188 (193)
T ss_dssp -CEEEETTTC-
T ss_pred -EEEEEhHHHH
Confidence 9999987643
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=3.4e-15 Score=119.79 Aligned_cols=79 Identities=19% Similarity=0.330 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
++++|||+|||+++|+++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++. +..+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~---- 72 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKD---PATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKV---- 72 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCC---TTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEE----
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEC---CCCCCccceEEEEEccHHHHHHHHhc--ccccCCeE----
Confidence 4689999999999999999999999999999999873 23368999999999999999999974 67888887
Q ss_pred ceEEEeecC
Q 026189 219 TLKIQFAHF 227 (242)
Q Consensus 219 ~LrV~~ar~ 227 (242)
|+|.++..
T Consensus 73 -i~v~~~~~ 80 (167)
T 2cjk_A 73 -IDPKRAIP 80 (167)
T ss_dssp -CCCEECCC
T ss_pred -cccccccc
Confidence 88888753
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=5.1e-15 Score=120.00 Aligned_cols=78 Identities=14% Similarity=0.308 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||.++++++|+++|++||.|..+ ..+ ++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 165 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQD----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS-- 165 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSS----SSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE--
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCC----CCCceEEEEEECCHHHHHHHHHHhCCCEECCeE--
Confidence 3467899999999999999999999999987655 222 578899999999999999999999999999988
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 166 ---i~v~~a~~ 173 (175)
T 1fje_B 166 ---VSLYYTGE 173 (175)
T ss_dssp ---EEEEECSS
T ss_pred ---EEEEecCC
Confidence 99999974
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=9e-15 Score=124.88 Aligned_cols=78 Identities=14% Similarity=0.295 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC-CCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD-DKKP 215 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG-~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~-g~~~ 215 (242)
.++++|||+|||.++++++|+++|++|| .|.+|+++. +++|||||+|.+.++|++|++.|+|..+. ++.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~- 219 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH- 219 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS--------SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCB-
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE--------CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCe-
Confidence 4578999999999999999999999999 999999965 23579999999999999999999999999 777
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|+|++.+
T Consensus 220 ----l~v~~a~~~ 228 (229)
T 2adc_A 220 ----LRVSFSKST 228 (229)
T ss_dssp ----CEEEECSSC
T ss_pred ----EEEEEecCC
Confidence 999999854
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=120.73 Aligned_cols=78 Identities=14% Similarity=0.295 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC-CCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD-DKKP 215 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG-~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~-g~~~ 215 (242)
.++++|||+|||.++++++|+++|++|| .|.+|+++. +.+|||||+|.+.++|++|++.|+|..+. ++.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~- 188 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHH- 188 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS--------TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCS-
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe--------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCe-
Confidence 4678999999999999999999999999 999999965 23579999999999999999999999999 777
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|+|++.+
T Consensus 189 ----l~v~~a~~~ 197 (198)
T 1qm9_A 189 ----LRVSFSKST 197 (198)
T ss_dssp ----CCEEEECCC
T ss_pred ----EEEEeeccc
Confidence 999999854
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.55 E-value=2.1e-14 Score=125.46 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPTDC-TRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~-te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
....++|||+|||.++ ++++|+++|++||.|.+|+|+.+. + |+++|||||+|.+.++|++|++.|+|..+.|+.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~---~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~- 255 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ---D-GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSH- 255 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS---S-CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEE-
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC---C-CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE-
Confidence 4567899999999995 999999999999999999998753 2 589999999999999999999999999999988
Q ss_pred CCCceEEEeecCC
Q 026189 216 DSPTLKIQFAHFP 228 (242)
Q Consensus 216 ~~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 256 ----l~v~~a~~~ 264 (284)
T 3smz_A 256 ----LRVSFCAPG 264 (284)
T ss_dssp ----CEEEECCSS
T ss_pred ----EEEEEecCC
Confidence 999999754
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=6.2e-15 Score=122.16 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=69.9
Q ss_pred CCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 140 SNLLFVDGLPT-DCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 140 ~~tLfVgnLp~-~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
+++|||+|||+ ++++++|+++|++||.|.+|+++.+ .+|||||+|.+.++|++|++.|+|..+.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~---- 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--------KKENALVQMADGNQAQLAMSHLNGHKLHGKP---- 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT--------CSSCCEEECTTTHHHHHHHHHHTTCCCSSCC----
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC--------CCCEEEEEECCHHHHHHHHHHhCCCeecCeE----
Confidence 58999999999 9999999999999999999999752 1569999999999999999999999999988
Q ss_pred ceEEEeecCC
Q 026189 219 TLKIQFAHFP 228 (242)
Q Consensus 219 ~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 71 -l~v~~a~~~ 79 (198)
T 1qm9_A 71 -IRITLSKHQ 79 (198)
T ss_dssp -CEEEECCCC
T ss_pred -EEEEEecCC
Confidence 999999854
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=2.3e-14 Score=125.24 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
...++|||+|||+++|+++|+++|++||.|.+|+++.+ +..++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~---~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--- 166 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYS---ERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT--- 166 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC---TTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEee---CCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE---
Confidence 35579999999999999999999999999999999874 223689999999999999999999999999999988
Q ss_pred CceEEEeecCCC
Q 026189 218 PTLKIQFAHFPF 229 (242)
Q Consensus 218 ~~LrV~~ar~~~ 229 (242)
|+|.|+....
T Consensus 167 --i~v~~a~~~~ 176 (284)
T 3smz_A 167 --LYVHWTDAGQ 176 (284)
T ss_dssp --CEEEECCGGG
T ss_pred --EEEEECCCCC
Confidence 9999997644
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.53 E-value=1.3e-14 Score=122.85 Aligned_cols=82 Identities=13% Similarity=0.204 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCe--EEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGY--REIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i--~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
.++++|||+|||+++|+++|+++|++||.| .+|+++.++ ++.+|||||+|.+.++|++|+..|||+.|.+..
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-----~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~- 194 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-----SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN- 194 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-----SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS-
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-----CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC-
Confidence 467899999999999999999999999999 899987632 245689999999999999999999999999874
Q ss_pred CCCceEEEee
Q 026189 216 DSPTLKIQFA 225 (242)
Q Consensus 216 ~~~~LrV~~a 225 (242)
...++.|.|+
T Consensus 195 ~~~p~~vk~~ 204 (205)
T 3tyt_A 195 GPYPYTLKLC 204 (205)
T ss_dssp SSSCEECEEE
T ss_pred CCcceEEEec
Confidence 2446777776
No 191
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=2.2e-14 Score=124.84 Aligned_cols=77 Identities=27% Similarity=0.411 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||+++|+++|+++|++||.|.+|++. +++|||||+|.+.++|++|+..|+|..+.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~-- 87 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---------RDRGFGFIRLESRTLAEIAKAELDGTILKSRP-- 87 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCcEEEEEECCHHHHHHHHHHcCCcEECCce--
Confidence 3556799999999999999999999999999999995 34679999999999999999999999999988
Q ss_pred CCceEEEeecC
Q 026189 217 SPTLKIQFAHF 227 (242)
Q Consensus 217 ~~~LrV~~ar~ 227 (242)
|+|.|+..
T Consensus 88 ---l~v~~a~~ 95 (261)
T 3sde_A 88 ---LRIRFATH 95 (261)
T ss_dssp ---CEEEECCC
T ss_pred ---eEeeeccc
Confidence 99999974
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.1e-14 Score=106.51 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCCCC-----------HHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHH
Q 026189 137 KGESNLLFVDGLPTDCT-----------RREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDAL 205 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~t-----------e~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L 205 (242)
..++++|+|.||..... +++|+++|++||.|++|.| .+ + .++|||||+|.+.++|++|++.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~---~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FD---R---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ET---T---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ec---C---CCCEEEEEEECCHHHHHHHHHHc
Confidence 45688999999944332 5899999999999999966 32 1 36789999999999999999999
Q ss_pred CCceeCCCCCCCCceEEEeecC
Q 026189 206 HGYKFDDKKPDSPTLKIQFAHF 227 (242)
Q Consensus 206 ~G~~i~g~~~~~~~LrV~~ar~ 227 (242)
||..+.++. |+|+|+..
T Consensus 85 ng~~~~gr~-----l~v~~a~~ 101 (112)
T 2dit_A 85 DGRWFGGRQ-----ITAQAWDG 101 (112)
T ss_dssp TTCEETTEE-----CEEEECCS
T ss_pred CCCEECCcE-----EEEEEeCC
Confidence 999999988 99999975
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=2.4e-14 Score=115.26 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPF----V-------GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 207 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~f----G-------~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G 207 (242)
+.++|||+|||.++|+++|+++|++| | .|.++++. +++|||||+|.+.++|++|+ .|+|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---------~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---------TTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---------CCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 46899999999999999999999999 6 77777773 45679999999999999999 9999
Q ss_pred ceeCCCCCCCCceEEEeecCC
Q 026189 208 YKFDDKKPDSPTLKIQFAHFP 228 (242)
Q Consensus 208 ~~i~g~~~~~~~LrV~~ar~~ 228 (242)
..+.++. |+|++++..
T Consensus 73 ~~~~g~~-----i~v~~~~~~ 88 (172)
T 2g4b_A 73 IIFQGQS-----LKIRRPHDY 88 (172)
T ss_dssp CEETTEE-----CEEECCSSC
T ss_pred cEecCce-----eeecCCccc
Confidence 9999988 999998754
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=3.8e-15 Score=120.78 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=69.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCC
Q 026189 137 KGESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPD 216 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~ 216 (242)
....++|||+|||.++|+++|+++|++||.+..+.+... .+ ++++|||||+|.+.++|++|+ +|+|..+.++.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~---~~-~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~-- 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV---RT-GTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNE-- 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEE---EE-ETTTTEEEEEESSHHHHHHHH-HGGGEEETTEE--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEEC---CC-CccccEEEEEECCHHHHHHHH-hcCCCEeCCeE--
Confidence 466789999999999999999999999987765323221 12 578899999999999999999 59999999988
Q ss_pred CCceEEEeecCC
Q 026189 217 SPTLKIQFAHFP 228 (242)
Q Consensus 217 ~~~LrV~~ar~~ 228 (242)
|+|+|++..
T Consensus 83 ---l~v~~~~~~ 91 (175)
T 1fje_B 83 ---IKLEKPKGR 91 (175)
T ss_dssp ---EEEECCCCS
T ss_pred ---EEEecCCCc
Confidence 999999754
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=3.2e-14 Score=117.12 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPF----V-------GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 207 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~f----G-------~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G 207 (242)
.+++|||+|||+++|+++|+++|++| | .|.++++ ++++|||||+|.+.++|++|+ .|+|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---------~~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---------NQDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---------ETTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---------cCCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 46899999999999999999999999 5 6666666 255789999999999999999 8999
Q ss_pred ceeCCCCCCCCceEEEeecCC
Q 026189 208 YKFDDKKPDSPTLKIQFAHFP 228 (242)
Q Consensus 208 ~~i~g~~~~~~~LrV~~ar~~ 228 (242)
..+.++. |+|+|++..
T Consensus 73 ~~~~g~~-----i~v~~~~~~ 88 (198)
T 2yh0_A 73 IIFQGQS-----LKIRRPHDY 88 (198)
T ss_dssp EEETTEE-----EEEECCCCC
T ss_pred CEEcCce-----EEEeCCCCC
Confidence 9999998 999999754
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.49 E-value=3.5e-14 Score=124.47 Aligned_cols=83 Identities=13% Similarity=0.238 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 137 KGESNLLFVDGLPTD-CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~-~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
....++|||+|||.+ +++++|+++|++||.|.+|+++.+.. ..++++|||||+|.+.++|++|+ .|||..|.++.
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~--~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~- 282 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQK--EHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNRE- 282 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETTEE-
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCC--cCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcE-
Confidence 456789999999999 99999999999999999999976321 01488999999999999999999 99999999988
Q ss_pred CCCceEEEeecC
Q 026189 216 DSPTLKIQFAHF 227 (242)
Q Consensus 216 ~~~~LrV~~ar~ 227 (242)
|+|+|++.
T Consensus 283 ----i~V~~a~~ 290 (292)
T 2ghp_A 283 ----ISVSLADK 290 (292)
T ss_dssp ----EEEEECCC
T ss_pred ----EEEEEecC
Confidence 99999974
No 197
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.47 E-value=1.1e-13 Score=126.33 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=68.6
Q ss_pred CCCCCCCCEEEEcC--CCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeC
Q 026189 134 PLKKGESNLLFVDG--LPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 211 (242)
Q Consensus 134 ~~~~~~~~tLfVgn--Lp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~ 211 (242)
.....++++|||+| |++.+||++|+++|++||+|++|++. .+||||||+|.+.++|++|+++|||.++.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~---------~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---------PNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC---------TTCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 33467889999999 58899999999999999999988763 24679999999999999999999999995
Q ss_pred CCCCCCCceEEEeec
Q 026189 212 DKKPDSPTLKIQFAH 226 (242)
Q Consensus 212 g~~~~~~~LrV~~ar 226 (242)
+...++.+|.|.|+.
T Consensus 83 ~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 83 DDLGQKITLYLNFVE 97 (345)
T ss_dssp CTTSCEEECEEEECS
T ss_pred cccCCceEEEEEEee
Confidence 331112357888874
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=2.5e-13 Score=118.14 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC-CceeC---CCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH-GYKFD---DKK 214 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~-G~~i~---g~~ 214 (242)
+.++|||+|||..+|+++|+++|++||.|.+|+++.++ + |+++|||||+|.+.++|++|++.|+ +..+. ++.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~---~-g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~ 170 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD---R-GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP 170 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET---T-SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC---C-CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce
Confidence 46799999999999999999999999999999999863 2 5899999999999999999999995 55554 554
Q ss_pred CCCCceEEEeecC
Q 026189 215 PDSPTLKIQFAHF 227 (242)
Q Consensus 215 ~~~~~LrV~~ar~ 227 (242)
|+|.|+..
T Consensus 171 -----i~v~~~~~ 178 (261)
T 3sde_A 171 -----VIVEPMEQ 178 (261)
T ss_dssp -----CEEEECCC
T ss_pred -----EEEeeccc
Confidence 99999975
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.45 E-value=1.1e-13 Score=121.43 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFV-GYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDS 217 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG-~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~ 217 (242)
..++|||+|||.++++++|+++|++|| .|.+|+++.+.. ++++|||||+|.+.++|++|++.|+|..+.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 188 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF----NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT--- 188 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEE---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE---
Confidence 578999999999999999999999999 999999987432 478999999999999999999999999999987
Q ss_pred CceEEEeecCCC
Q 026189 218 PTLKIQFAHFPF 229 (242)
Q Consensus 218 ~~LrV~~ar~~~ 229 (242)
|+|.|+....
T Consensus 189 --l~v~~a~~~~ 198 (292)
T 2ghp_A 189 --LVTKVSNPLE 198 (292)
T ss_dssp --CEEEECCCC-
T ss_pred --EEEEECCCCc
Confidence 9999997543
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=2e-13 Score=104.22 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=69.0
Q ss_pred CCCCEEEEcCC--CCCCC--------HHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCC
Q 026189 138 GESNLLFVDGL--PTDCT--------RREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 207 (242)
Q Consensus 138 ~~~~tLfVgnL--p~~~t--------e~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G 207 (242)
.+++.|.|.|+ |.++. ++||++.|++||.|++|+|..+....+ ++++||+||+|.+.++|++|+++|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-CTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-cCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35788999998 44443 368999999999999999976432211 26789999999999999999999999
Q ss_pred ceeCCCCCCCCceEEEeec
Q 026189 208 YKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 208 ~~i~g~~~~~~~LrV~~ar 226 (242)
..+.|+. |+|+|+.
T Consensus 82 ~~f~GR~-----i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRV-----VVTKYCD 95 (105)
T ss_dssp CEETTEE-----CEEEEEC
T ss_pred CEeCCCE-----EEEEEeC
Confidence 9999998 9999985
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=2.9e-14 Score=108.63 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=63.6
Q ss_pred EcCCCCCCCHHHHHHhh------------cCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 145 VDGLPTDCTRREVSHLF------------RPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 145 VgnLp~~~te~eL~~~F------------~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
+.||++++++++|+++| ++||.|.+|+|+.+ +. ++++|||||+|.+.++|++|++.|||..+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~---~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN---LG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCS---SS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeC---CC-CCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67888888988887777 99999999999863 22 4889999999999999999999999999999
Q ss_pred CCCCCCceEEEee
Q 026189 213 KKPDSPTLKIQFA 225 (242)
Q Consensus 213 ~~~~~~~LrV~~a 225 (242)
+. |+|+|+
T Consensus 96 r~-----i~v~~s 103 (104)
T 1jmt_A 96 QP-----IHAELS 103 (104)
T ss_dssp EE-----CCEEEC
T ss_pred EE-----EEEEEc
Confidence 98 999986
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=8.7e-13 Score=100.10 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceEEEeecCCC
Q 026189 150 TDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 150 ~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV~~ar~~~ 229 (242)
.++++++|+++|++||+|++|+|+. +++|||||+|++.++|+.|++.+++ +.++. |+|+|++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~--------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~-----l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS--------KKPGTAVVEFATVKAAELAVQNEVG--LVDNP-----LKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES--------SSSSEEEEEESCHHHHHHHHHTCCB--CSSSB-----CEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc--------CCCCEEEEEECCHHHHHHHHHhcCC--CCCCe-----EEEEEccCCC
Confidence 5689999999999999999999972 6678999999999999999988655 45665 9999998654
Q ss_pred C
Q 026189 230 H 230 (242)
Q Consensus 230 ~ 230 (242)
.
T Consensus 92 ~ 92 (100)
T 2d9o_A 92 Q 92 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=7e-13 Score=103.49 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCC--CC---CHHHHHHhhcCCCCeEEEEEEecCCC-CCCCccccEEEEEeCCHHHHHHHHHHHCCceeC
Q 026189 138 GESNLLFVDGLPT--DC---TRREVSHLFRPFVGYREIRVIHKEPR-RTGDRAMVLCFVEFDDPKCARTAMDALHGYKFD 211 (242)
Q Consensus 138 ~~~~tLfVgnLp~--~~---te~eL~~~F~~fG~i~~vrlv~~~~~-~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~ 211 (242)
.++++|+|.|+-. ++ -++||++.|++||.|.+|+|+.+... ...++++||+||+|.+.++|++|++.|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678999999842 22 36899999999999999999885321 112478899999999999999999999999999
Q ss_pred CCCCCCCceEEEeec
Q 026189 212 DKKPDSPTLKIQFAH 226 (242)
Q Consensus 212 g~~~~~~~LrV~~ar 226 (242)
|+. |+|+|+.
T Consensus 98 GR~-----i~v~~~~ 107 (118)
T 3ue2_A 98 GRK-----VVAEVYD 107 (118)
T ss_dssp TEE-----CEEEEEC
T ss_pred CcE-----EEEEEcC
Confidence 998 9999985
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=2.6e-11 Score=94.02 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=64.2
Q ss_pred CCCCEEEEcCCCCCCC----------HHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCC
Q 026189 138 GESNLLFVDGLPTDCT----------RREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHG 207 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~t----------e~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G 207 (242)
-+++.|.+.|+=..-. ++||++.|++||.|++|.|..+ ..+||+||+|.+.++|++|++.|||
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-------~~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-------SAQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-------CTTCCEEEECSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-------CCcEEEEEEECCHHHHHHHHHHhCC
Confidence 3567888888643221 3588999999999999988531 2478999999999999999999999
Q ss_pred ceeCCCCCCCCceEEEeec
Q 026189 208 YKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 208 ~~i~g~~~~~~~LrV~~ar 226 (242)
..+.|+. |+|+|+.
T Consensus 78 ~~f~GR~-----i~v~~~~ 91 (114)
T 3s6e_A 78 RWFAGKM-----ITAAYVP 91 (114)
T ss_dssp CEETTEE-----CEEEEEC
T ss_pred CEECCEE-----EEEEEEc
Confidence 9999998 9999985
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=2.2e-10 Score=89.89 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=65.2
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCC-HHHHHHHHHHHC--CceeCC
Q 026189 137 KGESNLLFVDGLPTD-CTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDD-PKCARTAMDALH--GYKFDD 212 (242)
Q Consensus 137 ~~~~~tLfVgnLp~~-~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~-~~~Ae~A~~~L~--G~~i~g 212 (242)
-..++.|||+||+.+ +++++|+++|++||+|.+|.++.... .|||.|.+ ..+|+.|++.|+ +.+|.+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 467899999999999 99999999999999999999975321 79999999 899999999994 778888
Q ss_pred CCCCCCceEEEeec
Q 026189 213 KKPDSPTLKIQFAH 226 (242)
Q Consensus 213 ~~~~~~~LrV~~ar 226 (242)
.. ++++...
T Consensus 86 ~~-----~~~evL~ 94 (121)
T 1owx_A 86 KE-----VTWEVLE 94 (121)
T ss_dssp SS-----EEEEECC
T ss_pred cE-----EEEEECC
Confidence 66 7776543
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=5.3e-10 Score=83.29 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=62.2
Q ss_pred CCCCEEEEcCCCC----CCCH----HHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCce
Q 026189 138 GESNLLFVDGLPT----DCTR----REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYK 209 (242)
Q Consensus 138 ~~~~tLfVgnLp~----~~te----~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~ 209 (242)
++..||+|.-++. +.-. .+|.+.|.+||+|+.++++.+ .+||+|.+.++|.+|++ |+|+.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----------~~fVtF~d~~sAlaAi~-mnG~~ 72 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----------KMWVTFLEGSSALNVLS-LNGKE 72 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----------SEEEEESSHHHHHHGGG-GTTCE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----------CEEEEECChHHHHHHHh-cCCeE
Confidence 4456788877662 2323 579999999999999999762 38999999999999998 99999
Q ss_pred eCCCCCCCCceEEEeecCCC
Q 026189 210 FDDKKPDSPTLKIQFAHFPF 229 (242)
Q Consensus 210 i~g~~~~~~~LrV~~ar~~~ 229 (242)
+.++. |+|++++..+
T Consensus 73 v~Gr~-----LkV~lkt~dW 87 (91)
T 2dnr_A 73 LLNRT-----ITIALKSPSG 87 (91)
T ss_dssp ETTEE-----EEEEECCCSS
T ss_pred eCCeE-----EEEEeCCCCc
Confidence 99998 9999998655
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=1.5e-08 Score=85.59 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=60.1
Q ss_pred CCHHHHHHhhcCCCCeEEEEEEecCC-CCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCceEEEeec
Q 026189 152 CTRREVSHLFRPFVGYREIRVIHKEP-RRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTLKIQFAH 226 (242)
Q Consensus 152 ~te~eL~~~F~~fG~i~~vrlv~~~~-~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~LrV~~ar 226 (242)
-.+++|++.|++||.|.+++|..... .+..++++|++||+|.+.++|++|++.|+|..+.||. |+++|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~-----i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK-----VVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB-----CEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE-----EEEEEcC
Confidence 34678999999999999999976322 2233589999999999999999999999999999998 9999974
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=6.6e-09 Score=77.83 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=59.8
Q ss_pred CCCCEEEEcCCCCC------CCH---HHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCc
Q 026189 138 GESNLLFVDGLPTD------CTR---REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGY 208 (242)
Q Consensus 138 ~~~~tLfVgnLp~~------~te---~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~ 208 (242)
++..||+|.-++.. ..+ .+|.+.|.+||+|+.+|++.+ -+||+|.+.++|.+|++ |+|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----------~~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----------QMLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----------EEEEECSCSHHHHHHHH-GGGS
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----------cEEEEEcChHHHHHHHh-cCCe
Confidence 45678999888642 232 469999999999999999862 29999999999999998 9999
Q ss_pred eeCCCCCCCCceEEEee
Q 026189 209 KFDDKKPDSPTLKIQFA 225 (242)
Q Consensus 209 ~i~g~~~~~~~LrV~~a 225 (242)
++.++. |+|++-
T Consensus 81 ~v~Gr~-----L~V~~k 92 (95)
T 1ufw_A 81 KVKGRA-----VKISGP 92 (95)
T ss_dssp EETTEE-----EEEECC
T ss_pred eeCCeE-----EEEecc
Confidence 999998 999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.34 E-value=1e-06 Score=67.63 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=64.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCC-----CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPF-----VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDD 212 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~f-----G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g 212 (242)
+..++|-+-|||..+++..|+.+..++ |+|+.+.|+. +. +-|+|+|.+...|-+|.-+|+|++|.+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p---DH------~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS---DF------NGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET---TT------TEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec---CC------CceEEEEccchhhHHHHhhcCCeeecC
Confidence 446889999999999999999999999 9999999975 22 259999999999999999999999999
Q ss_pred CCCCCCceEEE
Q 026189 213 KKPDSPTLKIQ 223 (242)
Q Consensus 213 ~~~~~~~LrV~ 223 (242)
++ |++.
T Consensus 90 r~-----Lr~g 95 (117)
T 2l9w_A 90 KV-----IRSG 95 (117)
T ss_dssp EE-----EEEE
T ss_pred eE-----EEec
Confidence 88 8864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=6.6e-05 Score=56.95 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=62.6
Q ss_pred CCCEEEEcCCCCCC-CH----HHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 139 ESNLLFVDGLPTDC-TR----REVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 139 ~~~tLfVgnLp~~~-te----~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
-.++|+|-||+.++ +. ++++++|.+|+++......+ +..-..|.|.+.++|.+|...||++.+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk---------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK---------SFKRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET---------TTTEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC---------cceEEEEEeCChHHHHHHHHHhccceecCc
Confidence 35789999999876 33 46789999999988876653 223578999999999999999999999999
Q ss_pred CCCCCceEEEeecC
Q 026189 214 KPDSPTLKIQFAHF 227 (242)
Q Consensus 214 ~~~~~~LrV~~ar~ 227 (242)
+ |||-|+..
T Consensus 75 ~-----~r~YFgq~ 83 (104)
T 1wey_A 75 E-----MKLYFAQT 83 (104)
T ss_dssp E-----CEEECCCC
T ss_pred e-----eEEEecCC
Confidence 8 99999973
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.58 E-value=0.00064 Score=50.30 Aligned_cols=86 Identities=16% Similarity=0.291 Sum_probs=65.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSPTL 220 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~~L 220 (242)
++|-|.+||+.+||+++.+.+....++.....+.-+... .-....-|||.|.+.+++..-.+.++|+.+.+.+....+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~-~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL-YPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS-TTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC-CCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 578899999999999999999998877666665522111 1234457999999999999999999999998876333344
Q ss_pred EEEeecC
Q 026189 221 KIQFAHF 227 (242)
Q Consensus 221 rV~~ar~ 227 (242)
.|+||-+
T Consensus 81 ~VE~AP~ 87 (91)
T 1uw4_A 81 IVEFAPF 87 (91)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 6787754
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.52 E-value=0.0005 Score=51.50 Aligned_cols=57 Identities=21% Similarity=0.419 Sum_probs=47.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 206 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~ 206 (242)
.....++| ++|.++...||.++|++||.| .|+.+-+ + -|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-T---------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-T---------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-T---------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-C---------eEEEEecCHHHHHHHHHhcc
Confidence 44567778 999999999999999999964 4777642 1 69999999999999998763
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.72 E-value=0.0017 Score=48.75 Aligned_cols=54 Identities=22% Similarity=0.440 Sum_probs=45.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 206 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~ 206 (242)
..++| ++|.++...||.++|++||. ..|+.+-+ + -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-T---------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-T---------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-T---------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-C---------eEEEEecCHHHHHHHHHhcc
Confidence 45677 99999999999999999995 45777642 1 69999999999999998774
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.70 E-value=0.0039 Score=46.61 Aligned_cols=88 Identities=19% Similarity=0.318 Sum_probs=61.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCCCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKPDSP 218 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~~~~ 218 (242)
.+-+|.|..||+.+||+++.+.+..+-++.....+.-+.. ........|||.|.+.++...-.+.++|+.+.+.+...-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s-~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLS-LYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSS-SCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccC-CCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 3568999999999999999888877644322222211000 011223468999999999999999999999988763333
Q ss_pred ceEEEeecC
Q 026189 219 TLKIQFAHF 227 (242)
Q Consensus 219 ~LrV~~ar~ 227 (242)
+-.|+||-+
T Consensus 87 ~a~VE~APy 95 (97)
T 2l08_A 87 PAVVEFAPF 95 (97)
T ss_dssp EEEEEECCC
T ss_pred eeEEEecCC
Confidence 556777743
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.32 E-value=0.023 Score=42.79 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=51.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcC----C-CCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRP----F-VGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~----f-G~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
..++|.|.|||.++.++.|+-+|++ - |+|..+.... .-|+|+|.+.+.|++.++. .-+.+.+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----------~~AvItF~d~~va~rVL~k-~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----------CGGVLTFREPADAERVLAQ-ADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----------TEEEEEESSHHHHHHHHTC-SCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----------CcEEEEEcChHHHHHHhcC-CcceecCe
Confidence 4579999999999999999999986 2 5666666632 2699999999999998733 34566665
Q ss_pred CCCCCceEE
Q 026189 214 KPDSPTLKI 222 (242)
Q Consensus 214 ~~~~~~LrV 222 (242)
. |.|
T Consensus 75 ~-----LsV 78 (104)
T 2dhx_A 75 Q-----LSL 78 (104)
T ss_dssp B-----CEE
T ss_pred E-----EEE
Confidence 4 666
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.12 E-value=0.016 Score=44.83 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=51.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCC
Q 026189 138 GESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDK 213 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~ 213 (242)
...+-|.|-+.|... -..|.+.|++||.|++.... .. .-+-.|.|.++.+|++|+ ..||..+.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~-----~NWihI~Y~s~~~A~rAL-~kNG~ii~g~ 86 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT-----GNWMHIRYQSKLQARKAL-SKDGRIFGES 86 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS-----SSEEEEEESSHHHHHHHH-TTTTCEETTT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC-----CCeEEEEeCCHHHHHHHH-HhCCeEecCC
Confidence 345688899999885 56777899999999987761 11 129999999999999999 6699999753
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.47 E-value=0.011 Score=46.30 Aligned_cols=26 Identities=12% Similarity=-0.092 Sum_probs=23.6
Q ss_pred ccccEEEEEeCCHHHHHHHHHHHCCc
Q 026189 183 RAMVLCFVEFDDPKCARTAMDALHGY 208 (242)
Q Consensus 183 k~kGfaFV~F~~~~~Ae~A~~~L~G~ 208 (242)
+++|||||+|.+.++|++|++.+++.
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhccc
Confidence 68899999999999999999888753
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.05 E-value=0.0066 Score=47.51 Aligned_cols=40 Identities=13% Similarity=-0.038 Sum_probs=36.8
Q ss_pred CccccEEEEEeCCHHHHHHHHHHH-CCceeCCCCCCCCceEEEeecC
Q 026189 182 DRAMVLCFVEFDDPKCARTAMDAL-HGYKFDDKKPDSPTLKIQFAHF 227 (242)
Q Consensus 182 gk~kGfaFV~F~~~~~Ae~A~~~L-~G~~i~g~~~~~~~LrV~~ar~ 227 (242)
.+.+|+++|+|.+.+.|++|++++ ||..++| . ++++++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~-----~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-E-----WTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-E-----EEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-c-----eecccccC
Confidence 477899999999999999999999 9999999 7 99999874
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.94 E-value=0.011 Score=55.66 Aligned_cols=55 Identities=9% Similarity=0.118 Sum_probs=40.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHH
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAM 202 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~ 202 (242)
..+.|||. .|.++++.+|.+.|++||.|.++.+..+ ...|+.|+|.+.+++.+++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--------~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--------FGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--------SSEEEEEECC---CCHHHH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--------CCeEEEEEeCCHHHHHHHH
Confidence 45799997 7999999999999999999999877531 1249999999999888665
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.26 E-value=0.12 Score=40.57 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=51.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEE-EEe----------cCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCce
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIR-VIH----------KEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYK 209 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vr-lv~----------~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~ 209 (242)
.-|.|-+.|...+ ..+-+.|++||.|++-. ... +...-+.-....+-.|+|++..+|++|+ ..||.+
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 4577778876655 45666899999997721 100 0000000012348899999999999999 789999
Q ss_pred eCCCCCCCCceEEEee
Q 026189 210 FDDKKPDSPTLKIQFA 225 (242)
Q Consensus 210 i~g~~~~~~~LrV~~a 225 (242)
|.|.. |-|...
T Consensus 86 i~G~m-----IGV~Py 96 (132)
T 3p3d_A 86 FNGVL-----LGVIPY 96 (132)
T ss_dssp ETTEE-----CEEEEC
T ss_pred eCcEE-----EEEEEC
Confidence 98865 666554
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.49 E-value=0.68 Score=43.78 Aligned_cols=56 Identities=21% Similarity=0.434 Sum_probs=45.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHC
Q 026189 139 ESNLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALH 206 (242)
Q Consensus 139 ~~~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~ 206 (242)
....++|+ +|..+...+|.++|+.||.+ +|+.+. . -.|||.|.+.+.|..++.++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----d------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----D------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----S------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----C------CeEEEEECCHHHHHHHHHHHH
Confidence 44577787 88899999999999999964 565542 1 179999999999999999885
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=59.71 E-value=24 Score=23.71 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=40.9
Q ss_pred EEEEc-CCCCCCCHHHHHHhhcCCCC-----eEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCceeCCCCC
Q 026189 142 LLFVD-GLPTDCTRREVSHLFRPFVG-----YREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKFDDKKP 215 (242)
Q Consensus 142 tLfVg-nLp~~~te~eL~~~F~~fG~-----i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i~g~~~ 215 (242)
+|||. +=-..+...+|..++..-+. |-.+++.. .|.||+-.. +.|+.+++.|++..+.+++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-----------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~- 68 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD-----------NASYVEILN-GKGPHVLKVMKNTTVKGKQ- 68 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS-----------SCEEEEECT-TCHHHHHHHHTTCCC---C-
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC-----------CcEEEEECH-HHHHHHHHHhccccCcCce-
Confidence 56663 22234566677666664443 34455531 188999875 5678899999999999988
Q ss_pred CCCceEEEeec
Q 026189 216 DSPTLKIQFAH 226 (242)
Q Consensus 216 ~~~~LrV~~ar 226 (242)
++|+.++
T Consensus 69 ----~~v~~~~ 75 (76)
T 2g0c_A 69 ----LKVNKAN 75 (76)
T ss_dssp ----CCEEECC
T ss_pred ----EEEEECC
Confidence 8887764
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=58.94 E-value=2.3 Score=31.19 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCCCEEEEcCCCCCCCHHH
Q 026189 138 GESNLLFVDGLPTDCTRRE 156 (242)
Q Consensus 138 ~~~~tLfVgnLp~~~te~e 156 (242)
...++|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999999863
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=25.35 E-value=1.3e+02 Score=24.12 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=35.6
Q ss_pred EEEEcCCCC-C--------CCHHHHHHhh--cCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHH-HHHH
Q 026189 142 LLFVDGLPT-D--------CTRREVSHLF--RPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCA-RTAM 202 (242)
Q Consensus 142 tLfVgnLp~-~--------~te~eL~~~F--~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~A-e~A~ 202 (242)
+..|-|+|. . .+..+|++.| +.|.+++ |+.+.. .. -+.|++.|+|..--.. ..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~---~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWN---YL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEEC---SS--BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEeccc---CC--CCceeEEEEecCChHHHHHHH
Confidence 555677776 2 3457899977 9999876 444442 22 3678999999974333 3444
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.22 E-value=1.4e+02 Score=18.88 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=42.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCCCccccEEEEEeCCHHHHHHHHHHHCCcee
Q 026189 141 NLLFVDGLPTDCTRREVSHLFRPFVGYREIRVIHKEPRRTGDRAMVLCFVEFDDPKCARTAMDALHGYKF 210 (242)
Q Consensus 141 ~tLfVgnLp~~~te~eL~~~F~~fG~i~~vrlv~~~~~~~ggk~kGfaFV~F~~~~~Ae~A~~~L~G~~i 210 (242)
.++.|.++.-.-....|+..+.+ -+|..+.+-. ..+-+.|+|.+.+....+++. -||..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~---------~~~~~~v~~~~~~~i~~~i~~-~Gy~~ 65 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL---------NEAVVAGNKEDVDKYIKAVEA-AGYQA 65 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS---------SEEEEEEEGGGHHHHHHHHHH-TTCEE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc---------cCCEEEEEECCHHHHHHHHHH-cCCce
Confidence 46889999888888999999998 8888887732 223677888755555666654 35543
Done!