BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026190
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex
Length = 180
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 8/177 (4%)
Query: 68 PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
PQ +LKE E DKDDESL K+K+ LLG D + + P V + L++V APG I
Sbjct: 7 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG--PI 62
Query: 125 VLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML 183
+ + D + LKEGS+Y +K F+V+ +IVSGLKY ++ G+KVD A M+
Sbjct: 63 TMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMV 122
Query: 184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 240
G++ P+PE Y P E P GM ARG+Y ++ F DDD + +L ++ I+KEW
Sbjct: 123 GSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWG 179
>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
pdb|1FST|B Chain B, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
Length = 182
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 6/174 (3%)
Query: 69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
Q +++E E DKDDESLRK+KE LLG V + P V + L++V APG ++
Sbjct: 10 QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTGLTLVCSSAPGPLELD 67
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGT 185
L + + F LKEG +Y +K +F V+ IVSG+KY ++AG+ +D+ M+G+
Sbjct: 68 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGS 126
Query: 186 FSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
+ P+ E Y P E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 127 YGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 180
>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 219
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
Q +++E E DKDDESLRK+KE LLG V + P V + L++V APG ++
Sbjct: 47 QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTRLTLVCSTAPGPLELD 104
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGT 185
L + + F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D M+G+
Sbjct: 105 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 163
Query: 186 FSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
+ P+ E Y P E P GM ARGSY+ +++F DDD +L ++ I+KEW
Sbjct: 164 YGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 217
>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 204
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
Q +++E E DKDDESLRK+KE LLG V + P V + L++V APG ++
Sbjct: 32 QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTRLTLVCSTAPGPLELD 89
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGT 185
L + + F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D M+G+
Sbjct: 90 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148
Query: 186 FSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
+ P+ E Y P E P GM ARGSY+ +++F DDD +L ++ I+KEW
Sbjct: 149 YGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 202
>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|F Chain F, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1HH4|D Chain D, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|E Chain E, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 204
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 6/174 (3%)
Query: 69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
Q +++E E DKDDESLRK+KE LLG V + P V + L++V APG ++
Sbjct: 32 QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTGLTLVCSSAPGPLELD 89
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGT 185
L + + F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D M+G+
Sbjct: 90 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148
Query: 186 FSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
+ P+ E Y P E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 149 YGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 202
>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple
Mutant
Length = 139
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++AG+ +D+ M+G++ P+ E Y P
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGSYGPRAEEYEFLTP 96
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++F I+K+W
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNFTIKKDW 137
>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant
pdb|2JHW|B Chain B, Crystal Structure Of Rhogdi E155a, E157a Mutant
Length = 138
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D M+G++ P+ E Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|B Chain B, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|C Chain C, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|D Chain D, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
Length = 139
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D M+G++ P+ E Y P
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ IR++W
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIRRDW 137
>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant
pdb|1FT3|B Chain B, Crystal Structure Of Truncated Rhogdi K141a Mutant
Length = 139
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 64/101 (63%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D+ M+G++ P+ E Y P
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDATDYMVGSYGPRAEEYEFLTP 96
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 137
>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant
pdb|2JHZ|B Chain B, Crystal Structure Of Rhogdi E155s, E157s Mutant
Length = 138
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D M+G++ P+ E Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAESYSFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHX|B Chain B, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHY|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
Length = 138
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D M+G++ P+ E Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEHYHFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20
Structures
pdb|1GDF|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr,
Minimized Average Structure
Length = 145
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D M+G++ P+ E Y P
Sbjct: 43 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 102
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSY+ +++F DDD +L ++ I+KEW
Sbjct: 103 MEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 143
>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|B Chain B, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|C Chain C, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|D Chain D, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
Length = 138
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 63/101 (62%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+ +D+ M+G++ P+ E Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGVTIDTTDYMVGSYGPRAEEYEFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant
Length = 138
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+ +D M+G++ P+ E Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDYMVGSYGPRAEEYEFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
pdb|1KMT|B Chain B, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
Length = 141
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D M+G++ P+ Y P
Sbjct: 39 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 98
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 99 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 139
>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHU|B Chain B, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHV|A Chain A, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|B Chain B, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|C Chain C, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|D Chain D, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|E Chain E, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|F Chain F, Crystal Structure Of Rhogdi E154a,e155a Mutant
Length = 138
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+K+D M+G++ P+ Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
pdb|1FT0|B Chain B, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
Length = 139
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y + +F V+ IVSG+KY ++ G+K+D M+G++ P+ E Y P
Sbjct: 37 FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 137
>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant
Length = 138
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+ +D M+G++ P+ E Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVYIDYTDYMVGSYGPRAEEYEFLTP 97
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
pdb|2BXW|B Chain B, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
Length = 141
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG+KY ++ G+ +D M+G++ P+ E Y P
Sbjct: 39 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRYGVYIDYTDYMVGSYGPRAEEYEFLTP 98
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P GM ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 99 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 139
>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|B Chain B, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|C Chain C, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
Length = 145
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 60/101 (59%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMP 198
F LKEG +Y +K +F V+ IVSG KY ++ G+K+D +G++ P+ E Y P
Sbjct: 44 FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYXVGSYGPRAEEYEFLTP 103
Query: 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P G ARGSYS +++F DDD +L ++ I+K+W
Sbjct: 104 VEEAPKGXLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 144
>pdb|1RM6|B Chain B, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|E Chain E, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|B Chain B, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|E Chain E, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 324
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 110 RILSLSIVAPGRNDIVLAVPEDGKPAGNW-FTLKEGSKYSLKFTFEVSNNIVSGLKYTNT 168
RI L + G N L VP D GNW E ++ T V ++G+KY
Sbjct: 248 RIAGLRVAITGSNSAPLMVPVDALLGGNWDDAAAETLAQLVRKTSNVLRTTITGVKYRRR 307
Query: 169 V 169
V
Sbjct: 308 V 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,241,301
Number of Sequences: 62578
Number of extensions: 302171
Number of successful extensions: 598
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 27
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)