BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026190
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1
PE=1 SV=1
Length = 240
Score = 328 bits (842), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 155/195 (79%), Positives = 174/195 (89%), Gaps = 2/195 (1%)
Query: 48 TVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEP 107
++ T+EE+DDD + +QLGPQYT+KE +EKDKDDESLRKWKEQLLGSVD NIGETL+P
Sbjct: 48 SLCATEEEEDDDSK--LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDP 105
Query: 108 EVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
EVRI SL+I++PGR DIVL VPE+G P G WFTLKEGSKY+LKFTF V+NNIVSGL+YTN
Sbjct: 106 EVRIDSLAIISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTN 165
Query: 168 TVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYL 227
TVWK G+KVD AK+MLGTFSPQ EPY H MPEETTPSGMFARGSYSARTKFLDDDNKCYL
Sbjct: 166 TVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYL 225
Query: 228 EINYSFDIRKEWAAV 242
EINYSFDIRKEW A+
Sbjct: 226 EINYSFDIRKEWPAL 240
>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1
SV=3
Length = 200
Score = 127 bits (318), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 115/195 (58%), Gaps = 9/195 (4%)
Query: 51 ETDEEDDD-DREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEV 109
+ +E DDD D + + + PQ +LKE E DKDDESL K+K+ LLG V + + P V
Sbjct: 9 QLEEADDDLDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPV--VADPTVPNV 66
Query: 110 RILSLSIV---APGRNDIVLAVPEDGKP-AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKY 165
+ LS+V APG I + + D + + F LKEG +Y +K F+V+ +IVSGLKY
Sbjct: 67 TVTRLSLVCDSAPGP--ITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKY 124
Query: 166 TNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKC 225
++ G++VD A M+G++ P+PE Y P E P GM ARG+Y ++ F DDD +
Sbjct: 125 VQHTYRTGMRVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQD 184
Query: 226 YLEINYSFDIRKEWA 240
+L ++ I+K+W
Sbjct: 185 HLTWEWNLAIKKDWT 199
>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3
Length = 200
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 112/193 (58%), Gaps = 10/193 (5%)
Query: 54 EEDDD--DREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRI 111
EEDDD D + + + PQ +LKE E DKDDESL K+K+ LLG D + + P V +
Sbjct: 11 EEDDDELDGKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DGPVVADPTAPNVTV 68
Query: 112 LSLSIV---APGRNDIVLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
L++V APG I + + D + F LKEG +Y +K F+V+ +IVSGLKY
Sbjct: 69 TRLTLVCESAPGP--ITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDIVSGLKYVQ 126
Query: 168 TVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYL 227
++ G+KVD A M+G++ P+PE Y P E P GM ARG+Y ++ F DDD +L
Sbjct: 127 HTYRTGVKVDKATFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFTDDDKHDHL 186
Query: 228 EINYSFDIRKEWA 240
++ I+K+W
Sbjct: 187 TWEWNLSIKKDWT 199
>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1
SV=3
Length = 201
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 8/177 (4%)
Query: 68 PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
PQ +LKE E DKDDESL K+K+ LLG D + + P V + L++V APG I
Sbjct: 28 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG--PI 83
Query: 125 VLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML 183
+ + D + LKEGS+Y +K F+V+ +IVSGLKY ++ G+KVD A M+
Sbjct: 84 TMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMV 143
Query: 184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 240
G++ P+PE Y P E P GM ARG+Y ++ F DDD + +L ++ I+KEW
Sbjct: 144 GSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWT 200
>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3
Length = 204
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)
Query: 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
E ++D+ + + Q +++E E DKDDESLRK+KE LLG V + P V +
Sbjct: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTR 74
Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
L++V APG ++ L + + F LKEG +Y +K +F V+ IVSG+KY +
Sbjct: 75 LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 171 KAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 230
+ G+K+D M+G++ P+ E Y P E P GM ARGSY+ +++F DDD +L
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWE 193
Query: 231 YSFDIRKEW 239
++ I+KEW
Sbjct: 194 WNLTIKKEW 202
>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia
PE=1 SV=1
Length = 204
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)
Query: 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
E ++D+ + + Q +++E E DKDDESLRK+KE LLG V + P V +
Sbjct: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVIVTR 74
Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
L++V APG ++ L + + F LKEG +Y +K +F V+ IVSG+KY +
Sbjct: 75 LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 171 KAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 230
+ G+K+D M+G++ P+ E Y P E P GM ARGSY+ +++F DDD +L
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWE 193
Query: 231 YSFDIRKEW 239
++ I+KEW
Sbjct: 194 WNLTIKKEW 202
>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1
SV=3
Length = 204
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)
Query: 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
E ++D+ + + Q +++E E DKDDESLRK+KE LLG V + P V +
Sbjct: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVIVTR 74
Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
L++V APG ++ L + + F LKEG +Y +K +F V+ IVSG+KY +
Sbjct: 75 LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 171 KAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 230
+ G+K+D M+G++ P+ E Y P E P GM ARGSY+ +++F DDD +L
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWE 193
Query: 231 YSFDIRKEW 239
++ I+KEW
Sbjct: 194 WNLTIKKEW 202
>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA
PE=2 SV=1
Length = 204
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)
Query: 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
E ++D+ + + Q +++E E DKDDESLRK+KE LLG V + P V +
Sbjct: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTG 74
Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
L++V APG ++ L + + F LKEG +Y +K +F V+ IVSG+KY +
Sbjct: 75 LTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 171 KAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 230
+ G+K+D M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWE 193
Query: 231 YSFDIRKEW 239
++ I+K+W
Sbjct: 194 WNLTIKKDW 202
>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1
SV=3
Length = 204
Score = 120 bits (302), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 6/189 (3%)
Query: 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
E ++D+ + + Q +++E E DKDDESLRK+KE LLG V + P V +
Sbjct: 17 ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTG 74
Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
L++V APG ++ L + + F LKEG +Y +K +F V+ IVSG+KY +
Sbjct: 75 LTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133
Query: 171 KAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 230
+ G+K+D M+G++ P+ E Y P E P GM ARGSYS +++F DDD +L
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWE 193
Query: 231 YSFDIRKEW 239
++ I+K+W
Sbjct: 194 WNLTIKKDW 202
>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium
discoideum GN=rdiA PE=1 SV=1
Length = 197
Score = 117 bits (293), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 104/183 (56%), Gaps = 12/183 (6%)
Query: 67 GPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVL 126
G ++ + ++D +DE+L+++KE LLG+ + + ++ + + I GR D +
Sbjct: 17 GKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEMKIQI--EGRPDTIY 74
Query: 127 AVPEDGKP-----AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQ 181
P D K F LKE Y + TF + ++IVSGLK TNTV++ GIKV + K
Sbjct: 75 --PLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTNTVYRKGIKVSTEKH 132
Query: 182 MLGTFSPQPEPYIHEMPE---ETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKE 238
MLG+F+PQ + P E PSGM ARGSY+A+ F DDDN+ +L + Y+F I+ +
Sbjct: 133 MLGSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAKVVFTDDDNEEHLSVEYAFSIKSD 192
Query: 239 WAA 241
W +
Sbjct: 193 WKS 195
>sp|O14224|GDIR_SCHPO Rho GDP-dissociation inhibitor OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC6F12.06 PE=1 SV=1
Length = 205
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 101/196 (51%), Gaps = 18/196 (9%)
Query: 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPE----- 108
E+D + + LG + +L E ++ D +DESL+KWK L G P
Sbjct: 17 EDDTFEHGPPVSLGEKKSLNEYMKMDAEDESLQKWKASL------GITGTGYSPSNDRRT 70
Query: 109 VRILSLSIVAPGRNDIVL-----AVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGL 163
V IL LS++ GR+ + + A E + G FT+KEGS++ + F V + ++SGL
Sbjct: 71 VVILKLSLLVDGRDPVDVNMEDAASVEQIRKKG--FTIKEGSEFKIGVKFRVQHEVISGL 128
Query: 164 KYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDN 223
+Y TV + G VD M+G++ P PY + P+GM ARG Y A KF+DDD
Sbjct: 129 RYVQTVRRRGFVVDKTSTMIGSYGPSETPYDFTSEPDEAPTGMLARGHYEANGKFVDDDK 188
Query: 224 KCYLEINYSFDIRKEW 239
+ E ++FD+ K W
Sbjct: 189 VVHHEFVWAFDVAKSW 204
>sp|Q20496|GDIR_CAEEL Probable rho GDP-dissociation inhibitor OS=Caenorhabditis elegans
GN=rhi-1 PE=2 SV=1
Length = 191
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 93/175 (53%), Gaps = 7/175 (4%)
Query: 68 PQYTLKEQIEKDKDDESLRKWKEQLLGS----VDFDNIGETLEPEVRILSLSIVAPGRND 123
PQ ++ E + DK+DESL+ +K +LLG VD N L VR + L I
Sbjct: 20 PQKSIDELLNADKEDESLKVYKAKLLGQGTVIVDEKN---PLRVIVRSVELLINGKTAQS 76
Query: 124 IVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML 183
L+ P + ++KEGS Y L F F V I SGL Y + V ++GI V++ K M+
Sbjct: 77 FDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHVQREITSGLHYKHKVKRSGITVENEKYMM 136
Query: 184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKE 238
G+++P+ E ++ P E PSGM RG Y +K DDDN YL+ ++ I KE
Sbjct: 137 GSYAPKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDWQWTLHITKE 191
>sp|Q12434|GDIR_YEAST Rho GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RDI1 PE=1 SV=1
Length = 202
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 110/198 (55%), Gaps = 13/198 (6%)
Query: 50 SETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVD---FDNIGETLE 106
S+ +EE ++D+ ++ + T+ E D +DESL KWKE L S D + G+ +
Sbjct: 9 SQFEEERNNDQ---YKVSAKKTVDEYKNLDAEDESLAKWKESLGLSSDVLPLEFPGDKRK 65
Query: 107 PEVRILSLSIVAPGRNDIVLAVPEDG---KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGL 163
V+ + L +V N I + + + A + +KE S Y LK F+V + I++GL
Sbjct: 66 VVVQKIQL-LVNTEPNPITFDLTNEKTIKELASKRYKIKENSIYKLKIVFKVQHEIITGL 124
Query: 164 KYTNTVWKAGIKVDSAKQMLGTFSP--QPEPYIH-EMPEETTPSGMFARGSYSARTKFLD 220
+Y + KAGI VD LG+++P + +P+ E+PE PSG ARG+YSA +KF+D
Sbjct: 125 RYVQYIKKAGIAVDKIDDHLGSYAPNTKTKPFYEVELPESEAPSGFLARGNYSAVSKFID 184
Query: 221 DDNKCYLEINYSFDIRKE 238
DD +L +N+ +I K+
Sbjct: 185 DDKTNHLTLNWGVEIVKK 202
>sp|Q0II80|GDIR3_BOVIN Rho GDP-dissociation inhibitor 3 OS=Bos taurus GN=ARHGDIG PE=2 SV=1
Length = 225
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 71 TLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIVLA 127
+L E + D DDESL K+K LLG V + +L P V++ L+++ APG IV+
Sbjct: 55 SLLEIQQLDPDDESLVKYKRALLGPV-LPAVDPSL-PNVQVTRLTLISEQAPG--PIVMD 110
Query: 128 VPEDGKPAGNW-FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTF 186
+ + N F LKEG Y +K TF+V+ IVSGLK + ++ G++VD A M+G++
Sbjct: 111 LTGELAALKNQVFVLKEGVDYKVKITFKVNKEIVSGLKCLHHTYRHGLRVDKAVYMVGSY 170
Query: 187 SPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
P + Y P E P G RG+Y + F DDD +L + + ++W
Sbjct: 171 GPSAQEYEFVTPVEEAPRGALVRGAYVVTSFFTDDDRTAHLSWEWGLYVCQDW 223
>sp|Q62160|GDIR3_MOUSE Rho GDP-dissociation inhibitor 3 OS=Mus musculus GN=Arhgdig PE=2
SV=1
Length = 225
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 8/165 (4%)
Query: 79 DKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIVLAVPEDGKPA 135
D D SL K+K+ LLG I + P V++ L+++ APG I++ + D
Sbjct: 63 DPGDVSLVKYKQALLGP--LPPIMDPSLPNVQVTRLTLLTEQAPG--PIIMDLTGDLDAL 118
Query: 136 GNW-FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYI 194
N F LKEG +Y +K TF+V+ IVSGLK + ++ G++VD A M+G++ P+ + Y
Sbjct: 119 KNQVFVLKEGIEYKVKITFKVNKEIVSGLKCLHHTYRRGLRVDKAIFMVGSYGPRAQEYE 178
Query: 195 HEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
E P G ARG Y R+ F DDD +L + + ++W
Sbjct: 179 FVTSVEEAPRGALARGLYVVRSLFTDDDRLNHLSWEWHLHVCQDW 223
>sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo sapiens GN=ARHGDIG PE=2
SV=2
Length = 225
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 71 TLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGR--NDIV 125
+L E + D DD SL K+K LLG + + +L P V++ L+++ APG D+
Sbjct: 55 SLLEIRQLDPDDRSLAKYKRVLLGPLP-PAVDPSL-PNVQVTRLTLLSEQAPGPVVMDLT 112
Query: 126 --LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQML 183
LAV +D F LKEG Y +K +F+V IVSGLK + ++ G++VD M+
Sbjct: 113 GDLAVLKD-----QVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMV 167
Query: 184 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 239
G++ P + Y P E P G RG Y + F DDD +L + I ++W
Sbjct: 168 GSYGPSAQEYEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDW 223
>sp|P80237|GDIR1_CAVPO Rho GDP-dissociation inhibitor 1 (Fragments) OS=Cavia porcellus
GN=ARHGDIA PE=1 SV=1
Length = 111
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 156 SNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSAR 215
S I +Y ++ G+K+D M+G++ P+ E Y P E P GM AR
Sbjct: 38 SFKIKISFRYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLAR------ 91
Query: 216 TKFLDDDNKCYLEINYSFDIRK 237
F DDD +L + I+K
Sbjct: 92 --FTDDDKTDHLSGERNLTIKK 111
>sp|Q8NBL1|PGLT1_HUMAN Protein O-glucosyltransferase 1 OS=Homo sapiens GN=POGLUT1 PE=1
SV=1
Length = 392
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 132 GKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPE 191
GKPA L + KY F F + + ++ + + + L F PQ +
Sbjct: 250 GKPAAKDVHLVDHCKYKYLFNFR---GVAASFRFKHLFLCGSLVFHVGDEWLEFFYPQLK 306
Query: 192 PYIHEMPEETTPSG-----------------MFARGSYSARTKFLDDDNKCYLE 228
P++H +P +T S + RGS R DD CY E
Sbjct: 307 PWVHYIPVKTDLSNVQELLQFVKANDDVAQEIAERGSQFIRNHLQMDDITCYWE 360
>sp|A4Y344|ASTD_SHEPC N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=astD PE=3
SV=1
Length = 486
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 174 IKVDSAKQM-LGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINY 231
+ VD+ KQ+ +G ++ QP+P++ M ET GM A A+ LD K +E+ +
Sbjct: 297 LLVDAVKQIKVGPWNAQPQPFMGSMISETAAKGMVA-----AQANLLDLGGKVLVELTH 350
>sp|A1RNU4|ASTD_SHESW N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella sp.
(strain W3-18-1) GN=astD PE=3 SV=1
Length = 486
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 174 IKVDSAKQM-LGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINY 231
+ VD+ KQ+ +G ++ QP+P++ M ET GM A A+ LD K +E+ +
Sbjct: 297 LLVDAVKQIKVGPWNAQPQPFMGSMISETAAKGMVA-----AQANLLDLGGKVLVELTH 350
>sp|Q56XP9|ERFL1_ARATH Ethylene-responsive transcription factor-like protein At4g13040
OS=Arabidopsis thaliana GN=At4g13040 PE=2 SV=2
Length = 226
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 159 IVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPE 191
++ G+ Y N W+A IKV+ + LGTFS Q E
Sbjct: 116 LMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEE 148
>sp|Q0AZ86|THIE_SYNWW Thiamine-phosphate synthase OS=Syntrophomonas wolfei subsp. wolfei
(strain Goettingen) GN=thiE PE=3 SV=1
Length = 209
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 71 TLKEQIEKD-KDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVP 129
+L E++ K K S+ + +E+ GS +F + +TL+ E+R L + ++ R DI LAV
Sbjct: 21 SLLEEVRKAVKGGVSMVQLREKEAGSREFYELAQTLQTELRELGVPLLINDRLDIALAVD 80
Query: 130 EDGKPAGN 137
DG G
Sbjct: 81 ADGLHLGQ 88
>sp|A7GSJ5|DXS_BACCN 1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus subsp.
cytotoxis (strain NVH 391-98) GN=dxs PE=3 SV=1
Length = 630
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 126 LAVPEDGK----PAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQ 181
L VP D + P G W TL+EG++ ++ TF I ++ + KAG+ V
Sbjct: 479 LGVPMDDEFKVIPIGTWETLREGTQAAI-VTF--GTTIPMAMEAAERLGKAGVSVKVVNA 535
Query: 182 MLGTFSPQPEPYIHEMPEETTP 203
P E Y+H++ + P
Sbjct: 536 RF--IKPMDEAYLHDLLGKNIP 555
>sp|B7HNU0|DXS_BACC7 1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain
AH187) GN=dxs PE=3 SV=1
Length = 630
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 134 PAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPY 193
P G+W TLKEG++ ++ TF I ++ + KAG+ V P E Y
Sbjct: 491 PIGSWETLKEGTQAAI-LTF--GTTIPMAMEAAERLEKAGVSVKVVNARF--IKPMDEAY 545
Query: 194 IHEMPEETTP 203
+H++ + P
Sbjct: 546 LHDLLGKNIP 555
>sp|Q6HDY8|DXS_BACHK 1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) GN=dxs PE=3 SV=1
Length = 630
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 134 PAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPY 193
P G+W TLKEG++ ++ TF I ++ + KAG+ V P E Y
Sbjct: 491 PIGSWETLKEGTQAAI-LTF--GTTIPMAMEAAERLEKAGVSVKVVNARF--IKPMDEAY 545
Query: 194 IHEMPEETTP 203
+H++ + P
Sbjct: 546 LHDLLGKNIP 555
>sp|Q635A7|DXS_BACCZ 1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain
ZK / E33L) GN=dxs PE=3 SV=1
Length = 630
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 134 PAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPY 193
P G+W TLKEG++ ++ TF I ++ + KAG+ V P E Y
Sbjct: 491 PIGSWETLKEGTQAAI-LTF--GTTIPMAMEAAERLEKAGVSVKVVNARF--IKPMDEAY 545
Query: 194 IHEMPEETTP 203
+H++ + P
Sbjct: 546 LHDLLGKNIP 555
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,338,091
Number of Sequences: 539616
Number of extensions: 4448356
Number of successful extensions: 18324
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 17423
Number of HSP's gapped (non-prelim): 722
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)