Query 026190
Match_columns 242
No_of_seqs 143 out of 281
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3205 Rho GDP-dissociation i 100.0 2.1E-82 4.5E-87 547.7 22.3 185 54-240 14-200 (200)
2 PF02115 Rho_GDI: RHO protein 100.0 1.3E-78 2.9E-83 529.9 16.7 186 51-238 14-200 (200)
3 PF02221 E1_DerP2_DerF2: ML do 95.9 0.16 3.4E-06 40.1 10.8 93 138-235 25-134 (134)
4 cd00917 PG-PI_TP The phosphati 92.6 1.5 3.3E-05 35.2 9.6 83 141-227 24-116 (122)
5 smart00737 ML Domain involved 89.7 3.9 8.5E-05 31.9 9.0 80 142-227 22-112 (118)
6 cd00258 GM2-AP GM2 activator p 85.7 11 0.00025 32.8 10.2 39 196-236 122-160 (162)
7 PF11797 DUF3324: Protein of u 84.9 10 0.00022 31.3 9.3 84 148-237 43-131 (140)
8 KOG4680 Uncharacterized conser 71.2 69 0.0015 27.8 10.8 80 150-236 59-145 (153)
9 cd00912 ML The ML (MD-2-relate 69.8 53 0.0012 26.1 9.0 87 138-226 23-120 (127)
10 PF04234 CopC: CopC domain; I 64.4 45 0.00097 25.6 7.3 29 207-236 69-97 (97)
11 PF15432 Sec-ASP3: Accessory S 59.5 27 0.00059 29.1 5.6 81 135-236 45-125 (128)
12 cd00915 MD-1_MD-2 MD-1 and MD- 52.3 1.4E+02 0.0031 25.0 9.6 83 138-227 28-124 (130)
13 PF14524 Wzt_C: Wzt C-terminal 45.5 1.4E+02 0.003 22.9 7.8 96 106-220 10-109 (142)
14 PF00379 Chitin_bind_4: Insect 44.1 48 0.001 22.7 4.1 29 199-232 18-46 (52)
15 PF05351 GMP_PDE_delta: GMP-PD 42.4 52 0.0011 28.6 4.9 78 147-225 63-147 (157)
16 cd00916 Npc2_like Niemann-Pick 41.5 1.9E+02 0.004 23.3 9.7 84 137-226 22-116 (123)
17 PF15043 CNRIP1: CB1 cannabino 38.1 1.6E+02 0.0034 25.8 7.1 50 107-156 5-55 (161)
18 COG2372 CopC Uncharacterized p 36.8 1.1E+02 0.0023 25.9 5.7 76 150-237 50-126 (127)
19 TIGR03711 acc_sec_asp3 accesso 34.8 96 0.0021 26.3 5.2 76 135-230 56-131 (135)
20 PHA00407 phage lambda Rz1-like 33.9 16 0.00036 28.5 0.4 12 84-95 27-38 (84)
21 TIGR03593 yidC_nterm membrane 33.5 2.6E+02 0.0057 26.1 8.5 12 81-92 95-106 (366)
22 PF13752 DUF4165: Domain of un 29.1 86 0.0019 26.4 4.0 30 207-236 91-120 (124)
23 smart00700 JHBP Juvenile hormo 27.4 4.1E+02 0.0088 23.0 9.1 10 83-92 21-30 (225)
24 PF12119 DUF3581: Protein of u 26.9 1.6E+02 0.0035 27.0 5.6 17 103-119 145-161 (218)
25 PF04787 Pox_H7: Late protein 25.8 55 0.0012 28.3 2.3 25 208-232 29-54 (147)
26 PF02494 HYR: HYR domain; Int 25.6 2E+02 0.0043 20.9 5.0 26 201-226 48-73 (81)
27 PF10651 DUF2479: Domain of un 24.7 78 0.0017 26.7 3.1 41 192-238 83-126 (170)
28 PF11687 DUF3284: Domain of un 24.5 2.3E+02 0.0051 22.7 5.7 61 161-234 40-101 (120)
29 cd07816 Bet_v1-like Ligand-bin 22.9 3.4E+02 0.0075 22.0 6.5 50 185-236 70-120 (148)
30 PF10666 Phage_Gp14: Phage pro 20.7 57 0.0012 27.8 1.4 14 79-92 28-41 (140)
31 PRK10579 hypothetical protein; 20.4 2.6E+02 0.0055 22.5 5.0 18 135-152 67-84 (94)
32 COG2967 ApaG Uncharacterized p 20.2 1.6E+02 0.0034 25.0 3.8 31 191-226 79-110 (126)
33 PRK10301 hypothetical protein; 20.2 1.1E+02 0.0024 25.0 2.9 30 206-236 95-124 (124)
No 1
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-82 Score=547.66 Aligned_cols=185 Identities=56% Similarity=0.956 Sum_probs=175.9
Q ss_pred ccccccccCCccCCcccCHHHHHhcCCCchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCCeEEeCCCCCC
Q 026190 54 EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGK 133 (242)
Q Consensus 54 ~e~~~~~~~~y~~g~~ksl~E~~~lD~eDESL~kwKesLlG~~~~~~~~~~~~p~V~I~~l~l~~egr~di~ldL~~~~~ 133 (242)
++++++.+..|++||||||+||+++|+|||||||||++|||.++ .++++++|+|+|.+|+|+|+||||++|+|++++.
T Consensus 14 ~~~e~~~d~~yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~--~~~~~~dp~VvV~~LtLl~~~r~pi~ldlt~~~~ 91 (200)
T KOG3205|consen 14 EEDEEDEDENYKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD--VIVDPNDPRVVVLKLTLLSEGRPPIVLDLTGDLS 91 (200)
T ss_pred cccccccccccCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC--cccCCCCCeEEEEEEEEEeCCCCCeEEeCCCCcc
Confidence 33444444599999999999999999999999999999999987 5779999999999999999999999999998885
Q ss_pred --CCCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeeeee
Q 026190 134 --PAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGS 211 (242)
Q Consensus 134 --~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG~ 211 (242)
+++.+|+|||||.|+|+|+|+|||+|||||||+|+|||.||+|||+..|||||+|++++|+|.+|+|||||||||||+
T Consensus 92 ~~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p~eeAPsGmlaRG~ 171 (200)
T KOG3205|consen 92 PELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSYGPQAEPYEFVTPEEEAPSGMLARGS 171 (200)
T ss_pred ccccCceEEeecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccCCCCCcceeeeCCcccCCccceeecc
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEeCCCceEEEEEEeEEeeccCC
Q 026190 212 YSARTKFLDDDNKCYLEINYSFDIRKEWA 240 (242)
Q Consensus 212 Y~akSkFvDDDk~~hL~~ewsfeI~KdW~ 240 (242)
|+|+|+|+|||++|||+|+|+|+|+|+|.
T Consensus 172 Ys~~skF~DDDk~~hLe~~w~~~I~K~W~ 200 (200)
T KOG3205|consen 172 YSAKSKFTDDDKTCHLEWNWTFDIKKEWK 200 (200)
T ss_pred eeeeeEEecCCCceEEEEEEEEEEeeccC
Confidence 99999999999999999999999999995
No 2
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=100.00 E-value=1.3e-78 Score=529.95 Aligned_cols=186 Identities=51% Similarity=0.835 Sum_probs=150.0
Q ss_pred CCCccccccccCCccCCcccCHHHHHhcCCCchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCCeEEeCCC
Q 026190 51 ETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPE 130 (242)
Q Consensus 51 ~~~~e~~~~~~~~y~~g~~ksl~E~~~lD~eDESL~kwKesLlG~~~~~~~~~~~~p~V~I~~l~l~~egr~di~ldL~~ 130 (242)
..+|+++++.+.+|++|++|||+||++||++|||||||||||||.++ .++++++|+|+|++|+|+|+|||||+|+|++
T Consensus 14 ~~~~~~~~~~~~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~--~~~d~~~p~V~v~~l~l~~eg~p~i~ldl~~ 91 (200)
T PF02115_consen 14 EEEEDEEDEETPGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD--VIGDPNDPKVIVKSLTLVVEGRPPIVLDLTG 91 (200)
T ss_dssp CTSSSSS---S----------HHHHHHTTTT-HHHHHHHHHHH-SS----SS-STS-SEEEEEEEEEETTSS-EEEETTS
T ss_pred ccccccccccccccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc--ccCCCCCCeEEEEEEEEEcCCCCCeeeeccC
Confidence 34556666677889999999999999999999999999999999887 5778889999999999999999999999998
Q ss_pred CC-CCCCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeee
Q 026190 131 DG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFAR 209 (242)
Q Consensus 131 ~~-~~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLAR 209 (242)
+. .+++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||+++.|||||+|++++|+|+||+|+||||||||
T Consensus 92 ~~~~~k~~~f~IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG~laR 171 (200)
T PF02115_consen 92 DLEDLKKKPFTIKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSGMLAR 171 (200)
T ss_dssp -GGGGGGSEEEEETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BSTTT-
T ss_pred ccccccCCcEEccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcceEEeCcCccCCCceeEe
Confidence 86 47899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeEEEEeCCCceEEEEEEeEEeecc
Q 026190 210 GSYSARTKFLDDDNKCYLEINYSFDIRKE 238 (242)
Q Consensus 210 G~Y~akSkFvDDDk~~hL~~ewsfeI~Kd 238 (242)
|+|+|+|+|+|||+++||+|+|+|+|+|+
T Consensus 172 G~Y~aks~f~DdD~~~~l~~~w~feI~Kd 200 (200)
T PF02115_consen 172 GSYTAKSKFVDDDKNVHLEWEWSFEIKKD 200 (200)
T ss_dssp EEEEEEEEEEETTSSECEEEEEEEEEESS
T ss_pred eeeeEEEEEEeCCCcEEEEEEEEEEEecC
Confidence 99999999999999999999999999996
No 3
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=95.90 E-value=0.16 Score=40.09 Aligned_cols=93 Identities=22% Similarity=0.332 Sum_probs=64.5
Q ss_pred eEEeccCCeEEEEEEEEEeceeeecceeEEEEEecc-eEeccc----c-cceec---cC---CCC-C---CeeecCC-CC
Q 026190 138 WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAG-IKVDSA----K-QMLGT---FS---PQP-E---PYIHEMP-EE 200 (242)
Q Consensus 138 ~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~G-I~Vdk~----e-~miGS---Y~---P~~-e---~Y~~~fp-~E 200 (242)
+-.++-|..++|++.|.+.++..++++-.-.++-.| ++|--. . ..... .. |-. . .|++.++ +.
T Consensus 25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~~~~~~~~~i~~ 104 (134)
T PF02221_consen 25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEYYTYTYTIPIPK 104 (134)
T ss_dssp SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEEEEEEEEEEEST
T ss_pred CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcccccccCccCCCcEEEEEEEEEccc
Confidence 366889999999999999999999999877778887 877554 2 23221 11 222 1 2344443 34
Q ss_pred CCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEe
Q 026190 201 TTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDI 235 (242)
Q Consensus 201 eAPSGmLARG~Y~akSkFvDDDk~~hL~~ewsfeI 235 (242)
..|. |+|+++.+++|+++...+=++..++|
T Consensus 105 ~~p~-----~~~~i~~~l~d~~~~~i~C~~~~v~I 134 (134)
T PF02221_consen 105 IYPP-----GKYTIQWKLTDQDGEEIACFEFPVKI 134 (134)
T ss_dssp TSSS-----EEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred ceee-----EEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence 4444 59999999999998777666665554
No 4
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=92.58 E-value=1.5 Score=35.17 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=55.9
Q ss_pred eccCCeEEEEEEEEEeceeeecceeEEEEEecceEeccccc-c---e---eccCCCC-CC--eeecCCCCCCCceeeeee
Q 026190 141 LKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQ-M---L---GTFSPQP-EP--YIHEMPEETTPSGMFARG 210 (242)
Q Consensus 141 IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~-m---i---GSY~P~~-e~--Y~~~fp~EeAPSGmLARG 210 (242)
++.|...+|.+.|....++-+|++-.=.++-.||++-.... . + |--=|=. -. |.++ -+-| +++-.|
T Consensus 24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~~G~~~~~~~---~~ip-~~~P~g 99 (122)
T cd00917 24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIEPGDKFLTKL---VDLP-GEIPPG 99 (122)
T ss_pred cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcCCCcEEEEEE---eeCC-CCCCCc
Confidence 77889999999999998888887776688888988764433 1 1 2111221 12 3332 2344 455568
Q ss_pred eeeeeEEEEeCCCceEE
Q 026190 211 SYSARTKFLDDDNKCYL 227 (242)
Q Consensus 211 ~Y~akSkFvDDDk~~hL 227 (242)
+|+++.++.|+|+....
T Consensus 100 ~y~v~~~l~d~~~~~i~ 116 (122)
T cd00917 100 KYTVSARAYTKDDEEIT 116 (122)
T ss_pred eEEEEEEEECCCCCEEE
Confidence 99999999998776553
No 5
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=89.66 E-value=3.9 Score=31.94 Aligned_cols=80 Identities=23% Similarity=0.494 Sum_probs=49.6
Q ss_pred ccCCeEEEEEEEEEeceeeecceeEEEEEe-cc--eEeccccc-c---eeccCCCC--CC--eeecCCCCCCCceeeeee
Q 026190 142 KEGSKYSLKFTFEVSNNIVSGLKYTNTVWK-AG--IKVDSAKQ-M---LGTFSPQP--EP--YIHEMPEETTPSGMFARG 210 (242)
Q Consensus 142 KEGs~Y~lki~FkVq~eIVsGLkY~q~VkK-~G--I~Vdk~e~-m---iGSY~P~~--e~--Y~~~fp~EeAPSGmLARG 210 (242)
+-|...+|.+.|...+++-+ |+ +.+..+ .| |++-.... . +|..=|-. +. |+..++ .|+ .+-+|
T Consensus 22 ~~g~~~~i~i~f~~~~~~~~-~~-~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G~~~~~~~~~~---v~~-~~P~~ 95 (118)
T smart00737 22 VRGKTLTISISFTLNEDISK-LK-VVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKGETVNYTNSLT---VPG-IFPPG 95 (118)
T ss_pred CCCCEEEEEEEEEEcccceE-EE-EEEEEEECCEEEeccCCCCCccccCCCCCCCCCCeeEEEEEeeE---ccc-cCCCe
Confidence 78899999999999877655 54 444444 44 55543222 1 23333433 23 333332 232 55578
Q ss_pred eeeeeEEEEeCCCceEE
Q 026190 211 SYSARTKFLDDDNKCYL 227 (242)
Q Consensus 211 ~Y~akSkFvDDDk~~hL 227 (242)
+|+++..++|+|+....
T Consensus 96 ~~~v~~~l~d~~~~~i~ 112 (118)
T smart00737 96 KYTVKWELTDEDGEELA 112 (118)
T ss_pred EEEEEEEEEcCCCCEEE
Confidence 99999999998877643
No 6
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=85.66 E-value=11 Score=32.80 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=28.2
Q ss_pred cCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190 196 EMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR 236 (242)
Q Consensus 196 ~fp~EeAPSGmLARG~Y~akSkFvDDDk~~hL~~ewsfeI~ 236 (242)
..|.=+-|+ +|.+|+|.++... +.+++..-=.+-+|.++
T Consensus 122 ~lP~~~LPs-~l~~G~Y~i~~~l-~~~g~~l~C~~~~~sL~ 160 (162)
T cd00258 122 TLPNVDLPS-WLTNGNYRITGIL-MADGKELGCGKFTFSLE 160 (162)
T ss_pred ecccccCCC-ccCCCcEEEEEEE-CCCCCEEEEEEEEEEEe
Confidence 445445674 9999999999966 77777665566666664
No 7
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=84.93 E-value=10 Score=31.33 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=56.4
Q ss_pred EEEEEEEEec---eeeecceeEEEEEecce--EecccccceeccCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCC
Q 026190 148 SLKFTFEVSN---NIVSGLKYTNTVWKAGI--KVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDD 222 (242)
Q Consensus 148 ~lki~FkVq~---eIVsGLkY~q~VkK~GI--~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDD 222 (242)
+-.|..+++| .+++.|+..-.|+++|= .+-+.+..-.+.||++. +.|..++..- -|.=|+|+++.+...++
T Consensus 43 ~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~-f~~~i~~~~~---~lk~G~Y~l~~~~~~~~ 118 (140)
T PF11797_consen 43 RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSN-FNFPIPLGGK---KLKPGKYTLKITAKSGK 118 (140)
T ss_pred eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCe-EEeEecCCCc---CccCCEEEEEEEEEcCC
Confidence 3444455544 47889999989988883 55666666678999876 4444555321 46669999999999988
Q ss_pred CceEEEEEEeEEeec
Q 026190 223 NKCYLEINYSFDIRK 237 (242)
Q Consensus 223 k~~hL~~ewsfeI~K 237 (242)
++- .|+=.|.|+.
T Consensus 119 ~~W--~f~k~F~It~ 131 (140)
T PF11797_consen 119 KTW--TFTKDFTITA 131 (140)
T ss_pred cEE--EEEEEEEECH
Confidence 822 3333677754
No 8
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=71.18 E-value=69 Score=27.77 Aligned_cols=80 Identities=29% Similarity=0.379 Sum_probs=54.2
Q ss_pred EEEEEEeceeeecceeEEEEEecceEecccccceeccC--CC-CC----CeeecCCCCCCCceeeeeeeeeeeEEEEeCC
Q 026190 150 KFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFS--PQ-PE----PYIHEMPEETTPSGMFARGSYSARTKFLDDD 222 (242)
Q Consensus 150 ki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~--P~-~e----~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDD 222 (242)
++.=.|- +-|++=+|+-.|+=.||+|-+...-|=+-. |- .- .++-..|+.+.| |+|.++.+-+|.+
T Consensus 59 ~i~~ntg-~tIs~Gk~VIeV~y~gi~ihsethDLCdetsCPVepG~f~~~hsq~LPg~tPP------G~Y~lkm~~~d~~ 131 (153)
T KOG4680|consen 59 SISGNTG-ETISEGKYVIEVSYGGIRIHSETHDLCDETSCPVEPGDFLVAHSQVLPGYTPP------GSYVLKMTAYDAK 131 (153)
T ss_pred EEecccc-cEeeCCeEEEEEEEeeEEEeeccccccccccCCcCcCceeeeeeEeccCcCCC------ceEEEEEEeecCC
Confidence 3333443 346777999889999999877655543322 11 11 144567776666 7999999999999
Q ss_pred CceEEEEEEeEEee
Q 026190 223 NKCYLEINYSFDIR 236 (242)
Q Consensus 223 k~~hL~~ewsfeI~ 236 (242)
|...-=+..+|+|.
T Consensus 132 ~~~LTCisfsf~i~ 145 (153)
T KOG4680|consen 132 GKELTCISFSFDIG 145 (153)
T ss_pred CCEEEEEEEEEEee
Confidence 98776667777775
No 9
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=69.84 E-value=53 Score=26.08 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=57.5
Q ss_pred eEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEeccc---ccce------eccCCCC--CCeeecCCCCCCCcee
Q 026190 138 WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSA---KQML------GTFSPQP--EPYIHEMPEETTPSGM 206 (242)
Q Consensus 138 ~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~---e~mi------GSY~P~~--e~Y~~~fp~EeAPSGm 206 (242)
+=.++-|..++|.+.|..+.++ +.|+-.=.++..||++-.. ...- +..=|-. +.|.|..... -|+=+
T Consensus 23 pC~~~~g~~~~i~~~f~~~~~~-~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~~~CPl~~G~~~~~~~~~~-v~~~~ 100 (127)
T cd00912 23 PCPDHRGGNYNLSVTGTLREDI-KSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKPSFCPLRKGQQYSYAKTVN-VPEFT 100 (127)
T ss_pred CCcccCCCeEEEEEEEEECccc-cEEEEEEEEEECCEEeccCCCCCCcccccCcccccCCcCCCCEEEEEEEEe-cCccc
Confidence 5668889999999999887665 5556666777889886542 2121 3344543 2455443221 33335
Q ss_pred eeeeeeeeeEEEEeCCCceE
Q 026190 207 FARGSYSARTKFLDDDNKCY 226 (242)
Q Consensus 207 LARG~Y~akSkFvDDDk~~h 226 (242)
+.++.|.++..-+|+|+...
T Consensus 101 ~P~~~~~v~~~l~~~~~~~v 120 (127)
T cd00912 101 IPTIEYQVVLEDVTDKGEVL 120 (127)
T ss_pred CCCeeEEEEEEEEcCCCCEE
Confidence 67789999999999887754
No 10
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=64.44 E-value=45 Score=25.62 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=23.7
Q ss_pred eeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190 207 FARGSYSARTKFLDDDNKCYLEINYSFDIR 236 (242)
Q Consensus 207 LARG~Y~akSkFvDDDk~~hL~~ewsfeI~ 236 (242)
|+-|.|++.-+.+-.||+.- +=.|+|.++
T Consensus 69 l~~G~YtV~wrvvs~DGH~~-~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPV-SGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEE-EEEEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCc-CCEEEEEEC
Confidence 77799999999999999987 888888874
No 11
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=59.46 E-value=27 Score=29.14 Aligned_cols=81 Identities=22% Similarity=0.353 Sum_probs=57.6
Q ss_pred CCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeeeeeeee
Q 026190 135 AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSA 214 (242)
Q Consensus 135 k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~a 214 (242)
-..|+ ||.|.+|+|++.+.+.. .+--|++.+.- |+..+.|+..-=+...-+|+.|.+. |+-
T Consensus 45 P~LPl-Lk~G~~Y~l~~~~~~~P---~~svylki~F~-----dr~~e~i~~~i~k~~~~~F~yP~~a----------ysY 105 (128)
T PF15432_consen 45 PSLPL-LKRGHTYQLKFNIDVVP---ENSVYLKIIFF-----DRQGEEIEEQIIKNDSFEFTYPEEA----------YSY 105 (128)
T ss_pred CCCCE-ecCCCEEEEEEEEEEcc---CCeEEEEEEEE-----ccCCCEeeEEEEecCceEEeCCCCc----------eEE
Confidence 35565 99999999999999974 46667877766 8888888887777777778887764 344
Q ss_pred eEEEEeCCCceEEEEEEeEEee
Q 026190 215 RTKFLDDDNKCYLEINYSFDIR 236 (242)
Q Consensus 215 kSkFvDDDk~~hL~~ewsfeI~ 236 (242)
+..-+.- |..+|.|. .|.|.
T Consensus 106 ~I~Lina-G~~~l~F~-~i~I~ 125 (128)
T PF15432_consen 106 TISLINA-GCQSLTFH-SIEIS 125 (128)
T ss_pred EEEEeeC-CCCeeEEe-EEEEE
Confidence 4444554 55566654 56654
No 12
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=52.35 E-value=1.4e+02 Score=25.03 Aligned_cols=83 Identities=14% Similarity=0.282 Sum_probs=58.5
Q ss_pred eEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEeccccccee--------ccCCCC--CC--ee--ecCCCCCCC
Q 026190 138 WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLG--------TFSPQP--EP--YI--HEMPEETTP 203 (242)
Q Consensus 138 ~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miG--------SY~P~~--e~--Y~--~~fp~EeAP 203 (242)
+=.++-|..+.|.+.|.-..+ +.-|+-.=...=.||++=...+. | ++=|.. +. |. +.+|-..=|
T Consensus 28 pC~l~rg~n~~I~~~f~~~~d-~~~L~~~v~~~~~g~~lP~~~e~-~C~~g~~~~s~CP~~kGet~~Y~~p~slpi~~yP 105 (130)
T cd00915 28 PCSTLKGTNGFIRIKFILRRD-IKELYFNLSLNVNGIEVLTRSEI-ICHGYLDKYSFCGALKGETVYYVGPFSFKGILIP 105 (130)
T ss_pred cccceeCCcEEEEEEEEECcc-cceeEEEEEEEECCccCCCCCcc-cccCCCcccccCCccCCceEEEeeeecccccccC
Confidence 345788999999999988654 78888877778889555433333 4 666664 34 44 456655455
Q ss_pred ceeeeeeeeeeeEEEEeCCCceEE
Q 026190 204 SGMFARGSYSARTKFLDDDNKCYL 227 (242)
Q Consensus 204 SGmLARG~Y~akSkFvDDDk~~hL 227 (242)
. |+|.++-..+|+++....
T Consensus 106 ~-----~~y~V~weL~d~~~~~l~ 124 (130)
T cd00915 106 Q-----GQYRCVAELIVENRETVA 124 (130)
T ss_pred C-----ccEEEEEEEECCCCCEEE
Confidence 4 799999999998776543
No 13
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=45.47 E-value=1.4e+02 Score=22.93 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=51.1
Q ss_pred CCeEEEEEEEEEeCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeceeeecceeEEEE-EecceEeccc-ccce
Q 026190 106 EPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTV-WKAGIKVDSA-KQML 183 (242)
Q Consensus 106 ~p~V~I~~l~l~~egr~di~ldL~~~~~~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~V-kK~GI~Vdk~-e~mi 183 (242)
+.++.|.++.|.-.+..+ ... +.-|..++++|+|++.+ .+.++..-=.+ ...|+.|-.. ..+.
T Consensus 10 ~~~~~I~~v~i~~~~g~~------------~~~--~~~ge~~~i~i~~~~~~-~i~~~~~~~~i~~~~g~~v~~~~t~~~ 74 (142)
T PF14524_consen 10 NGEARITSVRILDSDGEP------------TSS--FESGEPIRIRIDYEVNE-DIDDPVFGFAIRDSDGQRVFGTNTYDS 74 (142)
T ss_dssp -SSEEEEEEEEEETTEES-------------SS--EETTSEEEEEEEEEESS--EEEEEEEEEEEETT--EEEEEEHHHH
T ss_pred CCCEEEEEEEEEeCCCCE------------eeE--EeCCCEEEEEEEEEECC-CCCccEEEEEEEcCCCCEEEEECcccc
Confidence 357888888887642211 111 55688889999999954 45666543333 4556655332 2233
Q ss_pred eccCCC--CCCeeecCCCCCCCceeeeeeeeeeeEEEEe
Q 026190 184 GTFSPQ--PEPYIHEMPEETTPSGMFARGSYSARTKFLD 220 (242)
Q Consensus 184 GSY~P~--~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvD 220 (242)
+..-+. ...|++.+ +-|.= |.-|.|.+..-+.+
T Consensus 75 ~~~~~~~~~g~~~~~~---~i~~~-L~~G~Y~i~v~l~~ 109 (142)
T PF14524_consen 75 GFPIPLSEGGTYEVTF---TIPKP-LNPGEYSISVGLGD 109 (142)
T ss_dssp T--EEE-TT-EEEEEE---EEE---B-SEEEEEEEEEEE
T ss_pred CccccccCCCEEEEEE---EEcCc-cCCCeEEEEEEEEe
Confidence 322222 44455443 33444 88899999999943
No 14
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=44.13 E-value=48 Score=22.73 Aligned_cols=29 Identities=38% Similarity=0.670 Sum_probs=21.7
Q ss_pred CCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEe
Q 026190 199 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYS 232 (242)
Q Consensus 199 ~EeAPSGmLARG~Y~akSkFvDDDk~~hL~~ews 232 (242)
.++...+--.||+|. |+|+||+.+ ++.|.
T Consensus 18 ~~~~~~~~~v~GsY~----y~~pdG~~~-~V~Y~ 46 (52)
T PF00379_consen 18 PETEDEGGVVRGSYS----YIDPDGQTR-TVTYV 46 (52)
T ss_pred cccCCCCCEEEEEEE----EECCCCCEE-EEEEE
Confidence 344556677789997 899999877 77774
No 15
>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3.1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.
Probab=42.41 E-value=52 Score=28.55 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=55.4
Q ss_pred EEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCC---eeecCCC--CCCCceeeeeeee--eeeEEEE
Q 026190 147 YSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEP---YIHEMPE--ETTPSGMFARGSY--SARTKFL 219 (242)
Q Consensus 147 Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~---Y~~~fp~--EeAPSGmLARG~Y--~akSkFv 219 (242)
-.-+|.|.|-.++|.++|-+|.++=+|-.+..-..-.|=--|++.. ..|.+|+ +.-|.-|+ .|.| ..-|.|.
T Consensus 63 V~~~i~Fsvg~~pv~nFRmierhyF~~~llk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi-~gp~et~sdSfyf 141 (157)
T PF05351_consen 63 VGREIEFSVGDEPVNNFRMIERHYFRDQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMI-SGPYETKSDSFYF 141 (157)
T ss_dssp EEEEEEEEE-SS-ECCEEEEEEEEETTEEEEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHH-CTTTTEEEEEEEE
T ss_pred heEEEEEEECceeccccEeeEeeeecCceeeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHH-cCCCcceEEEEEE
Confidence 3457999998899999999999999999999888888888899762 4566663 34444444 3766 4667788
Q ss_pred eCCCce
Q 026190 220 DDDNKC 225 (242)
Q Consensus 220 DDDk~~ 225 (242)
+||+-+
T Consensus 142 v~~~Li 147 (157)
T PF05351_consen 142 VDDKLI 147 (157)
T ss_dssp ETTEEE
T ss_pred eCCEEE
Confidence 877644
No 16
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=41.53 E-value=1.9e+02 Score=23.29 Aligned_cols=84 Identities=25% Similarity=0.273 Sum_probs=55.4
Q ss_pred ceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEeccc----cc--ceeccCCCC--CC--eeecCCCC-CCCce
Q 026190 137 NWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSA----KQ--MLGTFSPQP--EP--YIHEMPEE-TTPSG 205 (242)
Q Consensus 137 ~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~----e~--miGSY~P~~--e~--Y~~~fp~E-eAPSG 205 (242)
.|=+|+-|...+|.|.|.-+.+ +..|+-.-...-.||++-=. .. -+|.-=|=. +. |++.+|.. ..|
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~-~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~v~~~~P-- 98 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFD-STSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLPVLAPYP-- 98 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcc-cceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeeeccccCC--
Confidence 5778999999999999966555 57777777777778775421 10 112222322 22 56666643 345
Q ss_pred eeeeeeeeeeEEEEeCCCceE
Q 026190 206 MFARGSYSARTKFLDDDNKCY 226 (242)
Q Consensus 206 mLARG~Y~akSkFvDDDk~~h 226 (242)
.++|.++-..+|+++...
T Consensus 99 ---~i~~~v~~~L~d~~~~~~ 116 (123)
T cd00916 99 ---GISVTVEWELTDDDGQVL 116 (123)
T ss_pred ---CeEEEEEEEEEcCCCCEE
Confidence 467999999999877754
No 17
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=38.07 E-value=1.6e+02 Score=25.84 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=33.3
Q ss_pred CeEEEEEEEEEeC-CCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEe
Q 026190 107 PEVRILSLSIVAP-GRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVS 156 (242)
Q Consensus 107 p~V~I~~l~l~~e-gr~di~ldL~~~~~~k~~~F~IKEGs~Y~lki~FkVq 156 (242)
|...-.+|+|..+ +..|+.+-..+.---+...++|-=|++|+|.|.||=-
T Consensus 5 ~~~f~vslslk~~pn~~PVffKvDG~RF~q~RTiKl~tdskYkv~V~~kP~ 55 (161)
T PF15043_consen 5 PGLFRVSLSLKIQPNDGPVFFKVDGQRFGQNRTIKLLTDSKYKVDVTIKPP 55 (161)
T ss_pred CceEEEEEEEEeCCCCCcEEEEecccccCCceEEEEecCCEEEEEEEEcCC
Confidence 4445556666653 3345777744332235678888899999999999864
No 18
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=36.78 E-value=1.1e+02 Score=25.88 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=52.5
Q ss_pred EEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCC-eeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEE
Q 026190 150 KFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEP-YIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLE 228 (242)
Q Consensus 150 ki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~-Y~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~~hL~ 228 (242)
.+.| +..|-.|+-+.+.+.-.|-.|.....++.. .. ...+.| +.--|.+|.|.+.=+++-.||+.- +
T Consensus 50 ~L~F--se~ve~~fs~~~l~~~d~~~v~t~~~~~~~-----~~~~~l~v~----l~~~L~aG~Y~v~WrvvS~DGH~v-~ 117 (127)
T COG2372 50 TLEF--SEGVEPGFSGAKLTGPDGEEVATAGTKLDE-----QNHTQLEVP----LPQPLKAGVYTVDWRVVSSDGHVV-K 117 (127)
T ss_pred EEec--CCccCCCcceeEEECCCCCccccCcccccc-----cCCcEEEec----CcccCCCCcEEEEEEEEecCCcEe-c
Confidence 4555 233556778888888887777666555532 22 112222 223588999999999999999987 7
Q ss_pred EEEeEEeec
Q 026190 229 INYSFDIRK 237 (242)
Q Consensus 229 ~ewsfeI~K 237 (242)
=.++|.|++
T Consensus 118 G~~sFsV~~ 126 (127)
T COG2372 118 GSISFSVGA 126 (127)
T ss_pred cEEEEEecC
Confidence 788998864
No 19
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=34.83 E-value=96 Score=26.33 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=50.2
Q ss_pred CCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeeeeeeee
Q 026190 135 AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSA 214 (242)
Q Consensus 135 k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~a 214 (242)
-..|+ ||.|.+|+|.+.+.+.. .|--|++.+.= |+..+.|++.-=+...-.|..|.+. |+=
T Consensus 56 P~LPl-Lk~g~~Y~i~~n~~~~P---~~s~~~ki~F~-----dr~~~ei~~~i~~~~~~~F~yP~~a----------ysY 116 (135)
T TIGR03711 56 PSLPL-LKRGQTYKLSLNADASP---EGSVYLKITFF-----DRQGEEIGTEIEKDDSIIFIYPDEA----------YFY 116 (135)
T ss_pred CCCcE-EcCCCEEEEEEeeeeCC---CceEEEEEEEe-----ccCCceeceEEEecCceEEECCCcc----------eEE
Confidence 45666 99999999999998864 45667766643 6777777777766666667777653 333
Q ss_pred eEEEEeCCCceEEEEE
Q 026190 215 RTKFLDDDNKCYLEIN 230 (242)
Q Consensus 215 kSkFvDDDk~~hL~~e 230 (242)
+..-+.. |..+|+|.
T Consensus 117 ~i~Lina-G~~~l~F~ 131 (135)
T TIGR03711 117 KISLISA-GSESFTFH 131 (135)
T ss_pred EEEeeeC-CCceeEEE
Confidence 4444443 55555554
No 20
>PHA00407 phage lambda Rz1-like protein
Probab=33.87 E-value=16 Score=28.55 Aligned_cols=12 Identities=50% Similarity=1.149 Sum_probs=10.0
Q ss_pred hHHHHHHHhcCC
Q 026190 84 SLRKWKEQLLGS 95 (242)
Q Consensus 84 SL~kwKesLlG~ 95 (242)
-|+|||.+|.|.
T Consensus 27 tl~rwkaaLIGl 38 (84)
T PHA00407 27 TLRRWKAALIGL 38 (84)
T ss_pred hhHHHHHHHHHH
Confidence 489999999774
No 21
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=33.52 E-value=2.6e+02 Score=26.06 Aligned_cols=12 Identities=50% Similarity=0.761 Sum_probs=6.7
Q ss_pred CchhHHHHHHHh
Q 026190 81 DDESLRKWKEQL 92 (242)
Q Consensus 81 eDESL~kwKesL 92 (242)
.+=.|.+||+.+
T Consensus 95 ~~~~Lk~y~~~~ 106 (366)
T TIGR03593 95 DSLELKKYKETL 106 (366)
T ss_pred eeeccccCcccc
Confidence 344566666665
No 22
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=29.11 E-value=86 Score=26.37 Aligned_cols=30 Identities=23% Similarity=0.589 Sum_probs=27.5
Q ss_pred eeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190 207 FARGSYSARTKFLDDDNKCYLEINYSFDIR 236 (242)
Q Consensus 207 LARG~Y~akSkFvDDDk~~hL~~ewsfeI~ 236 (242)
|.-|.|++++-..|-++.+.-++.|.|-|-
T Consensus 91 l~dG~ytvk~eiL~s~g~vV~t~s~~~~ID 120 (124)
T PF13752_consen 91 LGDGTYTVKSEILDSQGTVVQTYSYPFTID 120 (124)
T ss_pred CCCCcEEEEEEeeccCCCEEEeeeEeEEEe
Confidence 477999999999999999999999999873
No 23
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=27.42 E-value=4.1e+02 Score=22.98 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=6.5
Q ss_pred hhHHHHHHHh
Q 026190 83 ESLRKWKEQL 92 (242)
Q Consensus 83 ESL~kwKesL 92 (242)
++++.+..+|
T Consensus 21 ~~~~~~~~~~ 30 (225)
T smart00700 21 DAIEALLPQL 30 (225)
T ss_pred HHHHHHHHHH
Confidence 4566677776
No 24
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=26.91 E-value=1.6e+02 Score=26.96 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=14.8
Q ss_pred CCCCCeEEEEEEEEEeC
Q 026190 103 ETLEPEVRILSLSIVAP 119 (242)
Q Consensus 103 ~~~~p~V~I~~l~l~~e 119 (242)
.|..|-|+-.+|++...
T Consensus 145 Np~RPLViYESMs~~l~ 161 (218)
T PF12119_consen 145 NPARPLVIYESMSFELD 161 (218)
T ss_pred cCCCceEEeEeeEEEec
Confidence 56778999999999987
No 25
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=25.80 E-value=55 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=22.4
Q ss_pred eeeeeeeeEEE-EeCCCceEEEEEEe
Q 026190 208 ARGSYSARTKF-LDDDNKCYLEINYS 232 (242)
Q Consensus 208 ARG~Y~akSkF-vDDDk~~hL~~ews 232 (242)
.||.++....| +|+||+..++|+|.
T Consensus 29 L~~~~P~~tifsid~~g~f~iDF~Yd 54 (147)
T PF04787_consen 29 LLNKHPNDTIFSIDEDGKFFIDFEYD 54 (147)
T ss_pred HhcCCCcceeeeEcCCCCEEEEeeeC
Confidence 47899999999 99999999999983
No 26
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=25.60 E-value=2e+02 Score=20.90 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCCceeeeeeeeeeeEEEEeCCCceE
Q 026190 201 TTPSGMFARGSYSARTKFLDDDNKCY 226 (242)
Q Consensus 201 eAPSGmLARG~Y~akSkFvDDDk~~h 226 (242)
..|+++|.-|.|.++-+.+|.-|+.-
T Consensus 48 ~~~g~~f~~G~t~V~ytA~D~~GN~a 73 (81)
T PF02494_consen 48 HPPGDLFPVGTTTVTYTATDAAGNSA 73 (81)
T ss_pred CCCCceEeeceEEEEEEEEECCCCEE
Confidence 45677999999999999999988765
No 27
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=24.72 E-value=78 Score=26.69 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=24.5
Q ss_pred CeeecCCCCCCCceeee-eeeeeeeEEEEe--CCCceEEEEEEeEEeecc
Q 026190 192 PYIHEMPEETTPSGMFA-RGSYSARTKFLD--DDNKCYLEINYSFDIRKE 238 (242)
Q Consensus 192 ~Y~~~fp~EeAPSGmLA-RG~Y~akSkFvD--DDk~~hL~~ewsfeI~Kd 238 (242)
...|++|.+ +|+ -|.|.|...|.. ++...| +-+.+|.|.++
T Consensus 83 ~i~y~lp~~-----~l~~~G~v~a~~~i~~~~~~~~~~-t~~F~F~V~~s 126 (170)
T PF10651_consen 83 IIQYTLPDE-----FLKHVGKVKAQLFIYYNGDGQSIS-TANFTFEVEDS 126 (170)
T ss_dssp EEEEE--TT-----TTHSSEEEEEEEEEEEESSSEEEE----EEEEEE--
T ss_pred EEEEEECHH-----HhccCcEEEEEEEEEECCCCCEEE-EeeEEEEEecc
Confidence 356666554 444 499999988888 555555 88899999875
No 28
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=24.48 E-value=2.3e+02 Score=22.69 Aligned_cols=61 Identities=15% Similarity=0.313 Sum_probs=40.5
Q ss_pred ecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCc-eEEEEEEeEE
Q 026190 161 SGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNK-CYLEINYSFD 234 (242)
Q Consensus 161 sGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~-~hL~~ewsfe 234 (242)
.|++|.....+.+ ....-|-.|.|+ ..|.+.| .-+||++.++=.+.+-|.. +-++++-.++
T Consensus 40 ~G~~Y~K~~~~~~----~~~v~It~~~~~-~~Y~~~~--------~s~~~~~~i~Y~i~~~~~~~~~v~y~E~~~ 101 (120)
T PF11687_consen 40 KGFSYQKKFKNKR----EAKVKITEYEPN-KRYAATF--------SSSRGTFTISYEIEPLDDGSIEVTYEEEYE 101 (120)
T ss_pred CCcEEEEEcCCCC----EEEEEEEEEcCC-CEEEEEE--------EecCCCEEEEEEEEECCCCcEEEEEEEEEc
Confidence 8888888887764 333347778764 4566554 3457888888888876655 6666655544
No 29
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=22.90 E-value=3.4e+02 Score=21.97 Aligned_cols=50 Identities=16% Similarity=0.299 Sum_probs=30.5
Q ss_pred ccCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeC-CCceEEEEEEeEEee
Q 026190 185 TFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDD-DNKCYLEINYSFDIR 236 (242)
Q Consensus 185 SY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDD-Dk~~hL~~ewsfeI~ 236 (242)
.+-+....++|.+-+...|. +---+|.+..+|+.. ++.+.+.|...|+-.
T Consensus 70 ~~D~~~~~~~y~vveg~~~~--~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~ 120 (148)
T cd07816 70 AVDEENKTYKYTVIEGDVLK--DGYKSYKVEIKFVPKGDGGCVVKWTIEYEKK 120 (148)
T ss_pred EEcccccEEEEEEEeccccc--CceEEEEEEEEEEECCCCCEEEEEEEEEEEC
Confidence 34444444555543333332 123688899999875 667888888888754
No 30
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=20.69 E-value=57 Score=27.78 Aligned_cols=14 Identities=50% Similarity=0.648 Sum_probs=11.5
Q ss_pred CCCchhHHHHHHHh
Q 026190 79 DKDDESLRKWKEQL 92 (242)
Q Consensus 79 D~eDESL~kwKesL 92 (242)
--+|||+|||-++-
T Consensus 28 ~~~DE~~rk~~e~~ 41 (140)
T PF10666_consen 28 SLDDEMRRKWIEAD 41 (140)
T ss_pred ecChHHHHHHHHHH
Confidence 34899999998875
No 31
>PRK10579 hypothetical protein; Provisional
Probab=20.40 E-value=2.6e+02 Score=22.49 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.7
Q ss_pred CCceEEeccCCeEEEEEE
Q 026190 135 AGNWFTLKEGSKYSLKFT 152 (242)
Q Consensus 135 k~~~F~IKEGs~Y~lki~ 152 (242)
....|.++.++.|+|++.
T Consensus 67 aG~sF~VpanssF~l~v~ 84 (94)
T PRK10579 67 AGEVFNVPGHSEFHLQVA 84 (94)
T ss_pred CCCEEEECCCCeEEEEEC
Confidence 678899999999999865
No 32
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=20.22 E-value=1.6e+02 Score=24.96 Aligned_cols=31 Identities=32% Similarity=0.609 Sum_probs=22.9
Q ss_pred CCeeecCC-CCCCCceeeeeeeeeeeEEEEeCCCceE
Q 026190 191 EPYIHEMP-EETTPSGMFARGSYSARTKFLDDDNKCY 226 (242)
Q Consensus 191 e~Y~~~fp-~EeAPSGmLARG~Y~akSkFvDDDk~~h 226 (242)
+.|+|+.- +=.||+|.+ ||+|.+ +|+||..+
T Consensus 79 ~~y~YtSg~~l~Tp~G~M-~GhY~M----~~e~G~~F 110 (126)
T COG2967 79 EEYQYTSGCPLDTPSGTM-QGHYEM----IDEDGETF 110 (126)
T ss_pred CceEEcCCcCccCCcceE-EEEEEE----ecCCCcEE
Confidence 45777655 568899965 899985 57788765
No 33
>PRK10301 hypothetical protein; Provisional
Probab=20.19 E-value=1.1e+02 Score=25.01 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=25.4
Q ss_pred eeeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190 206 MFARGSYSARTKFLDDDNKCYLEINYSFDIR 236 (242)
Q Consensus 206 mLARG~Y~akSkFvDDDk~~hL~~ewsfeI~ 236 (242)
-|.-|.|++.=+.+-.|||.- +=.|+|.|+
T Consensus 95 ~L~~G~YtV~Wrvvs~DGH~~-~G~~~F~V~ 124 (124)
T PRK10301 95 SLKPGTYTVDWHVVSVDGHKT-KGHYTFSVK 124 (124)
T ss_pred CCCCccEEEEEEEEecCCCcc-CCeEEEEEC
Confidence 456799999999999999986 778888774
Done!