Query 026190
Match_columns 242
No_of_seqs 143 out of 281
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1doa_B RHO GDI 1, protein (GDP 100.0 4.5E-81 1.5E-85 549.9 18.6 187 53-241 31-219 (219)
2 1ds6_B RHO GDP-dissociation in 100.0 1.2E-80 4E-85 534.3 16.7 178 62-241 1-180 (180)
3 1kmt_A RHO GDP-dissociation in 100.0 2.3E-63 7.8E-68 412.9 15.2 138 104-241 2-141 (141)
4 2ag4_A GM2-AP, ganglioside GM2 90.0 2.4 8.1E-05 34.8 9.8 40 195-236 123-162 (164)
5 1xwv_A DER F II; beta sheets, 85.4 5.7 0.00019 31.1 9.0 95 136-237 24-129 (129)
6 3t5g_B Retinal ROD rhodopsin-s 80.4 3.6 0.00012 34.4 6.2 84 146-231 60-148 (152)
7 1nep_A EPV20, BNPC2, epididyma 79.8 19 0.00064 28.0 10.0 95 136-236 25-129 (130)
8 2r5o_A Putative ATP binding co 66.9 29 0.001 28.2 8.6 105 106-232 45-160 (188)
9 4goj_C Protein UNC-119 homolog 55.0 6.4 0.00022 35.0 2.5 83 150-233 146-236 (240)
10 1lyq_A PCOC copper resistance 43.3 51 0.0017 24.9 5.8 30 206-236 75-104 (104)
11 1xvs_A Protein APAG; MCSG APC2 40.0 69 0.0024 25.4 6.2 57 164-226 42-110 (126)
12 2oxg_Z SOXZ protein; immunoglo 29.8 1.9E+02 0.0063 22.1 8.8 76 142-232 15-104 (108)
13 1tza_A APAG protein, SOR45; st 26.4 1.4E+02 0.0049 23.8 6.1 57 164-226 42-110 (134)
14 2f1e_A Protein APAG; APAG prot 25.9 2E+02 0.0067 22.7 6.7 57 164-226 43-111 (127)
15 3nkg_A Uncharacterized protein 24.7 28 0.00096 29.5 1.6 37 122-158 5-43 (174)
16 2c9r_A COPC, copper resistance 20.9 1E+02 0.0035 23.1 3.9 30 206-236 73-102 (102)
17 2bn8_A CEDA, cell division act 20.2 61 0.0021 24.3 2.4 39 177-215 13-53 (87)
18 4gbs_A Putative lipoprotein; P 20.1 96 0.0033 25.3 4.0 25 210-235 170-198 (200)
No 1
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Probab=100.00 E-value=4.5e-81 Score=549.86 Aligned_cols=187 Identities=36% Similarity=0.637 Sum_probs=176.0
Q ss_pred CccccccccCCccCCcccCHHHHHhcCCCchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCC-CeEEeCCCC
Q 026190 53 DEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRN-DIVLAVPED 131 (242)
Q Consensus 53 ~~e~~~~~~~~y~~g~~ksl~E~~~lD~eDESL~kwKesLlG~~~~~~~~~~~~p~V~I~~l~l~~egr~-di~ldL~~~ 131 (242)
+||++++.+++|++|++|||+||++||+||||||||||||||.++ .+.++++|+|+|++|+|+++||| +|+|+|+++
T Consensus 31 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~--~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~~ 108 (219)
T 1doa_B 31 AENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA--VSADPNVPNVVVTRLTLVCSTAPGPLELDLTGD 108 (219)
T ss_dssp SSSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC--CCCCSSCCSBCCCEEEEECSSCSSCCEEECSSC
T ss_pred ccccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCCC
Confidence 445556677889999999999999999999999999999998776 46678889999999999999995 599999977
Q ss_pred C-CCCCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeeee
Q 026190 132 G-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARG 210 (242)
Q Consensus 132 ~-~~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG 210 (242)
. .+++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||
T Consensus 109 ~~~lk~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG 188 (219)
T 1doa_B 109 LESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARG 188 (219)
T ss_dssp CGGGGGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCS
T ss_pred hhhhcCCCEEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeee
Confidence 6 469999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEEEEeCCCceEEEEEEeEEeeccCCC
Q 026190 211 SYSARTKFLDDDNKCYLEINYSFDIRKEWAA 241 (242)
Q Consensus 211 ~Y~akSkFvDDDk~~hL~~ewsfeI~KdW~~ 241 (242)
+|+|+|+|+|||+++||+|+|+|+|+|||.+
T Consensus 189 ~Y~akSkF~DDD~~~hL~~eWsfeI~KdW~~ 219 (219)
T 1doa_B 189 SYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD 219 (219)
T ss_dssp EEEEEEEEECTTCCCCEEEEEEEEEESSTTC
T ss_pred eeeeeEEEEeCCCceEEEEEEEEEEecCCCC
Confidence 9999999999999999999999999999974
No 2
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A
Probab=100.00 E-value=1.2e-80 Score=534.27 Aligned_cols=178 Identities=39% Similarity=0.655 Sum_probs=170.4
Q ss_pred CCccCCcccCHHHHHhcCCCchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCC-CCeEEeCCCCC-CCCCceE
Q 026190 62 QDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGR-NDIVLAVPEDG-KPAGNWF 139 (242)
Q Consensus 62 ~~y~~g~~ksl~E~~~lD~eDESL~kwKesLlG~~~~~~~~~~~~p~V~I~~l~l~~egr-~di~ldL~~~~-~~k~~~F 139 (242)
++|++|++|||+||++||+||||||||||||||.++ +++++++|+|+|++|+|+++|| +||+++|+++. .+++.+|
T Consensus 1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~--~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~~f 78 (180)
T 1ds6_B 1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI 78 (180)
T ss_dssp CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCCCE
Confidence 469999999999999999999999999999998876 5678888999999999999999 88999999875 4689999
Q ss_pred EeccCCeEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEE
Q 026190 140 TLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFL 219 (242)
Q Consensus 140 ~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFv 219 (242)
+|||||.|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||+|+|+|+|+
T Consensus 79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~ 158 (180)
T 1ds6_B 79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT 158 (180)
T ss_dssp EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEEEEEeEEeeccCCC
Q 026190 220 DDDNKCYLEINYSFDIRKEWAA 241 (242)
Q Consensus 220 DDDk~~hL~~ewsfeI~KdW~~ 241 (242)
||||++||+|+|+|+|+|+|.+
T Consensus 159 DDD~~~hl~~~wsfeI~KdW~~ 180 (180)
T 1ds6_B 159 DDDKQDHLSWEWNLSIKKEWGE 180 (180)
T ss_dssp CTTCCCCEEEEEEEEEESSCC-
T ss_pred cCCCceEEEEEEEEEEeeCCCC
Confidence 9999999999999999999974
No 3
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=100.00 E-value=2.3e-63 Score=412.86 Aligned_cols=138 Identities=34% Similarity=0.671 Sum_probs=131.1
Q ss_pred CCCCeEEEEEEEEEeCCCC-CeEEeCCCCC-CCCCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEeccccc
Q 026190 104 TLEPEVRILSLSIVAPGRN-DIVLAVPEDG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQ 181 (242)
Q Consensus 104 ~~~p~V~I~~l~l~~egr~-di~ldL~~~~-~~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~ 181 (242)
+++|+|+|++|+|+++||| +|+++|+++. .+++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++
T Consensus 2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~ 81 (141)
T 1kmt_A 2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY 81 (141)
T ss_dssp CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccCceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceE
Confidence 4568999999999999976 6999999875 4699999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEeeccCCC
Q 026190 182 MLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAA 241 (242)
Q Consensus 182 miGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~~hL~~ewsfeI~KdW~~ 241 (242)
|||||+|++++|+|+||+|||||||||||+|+|+|+|+|||+++||+|+|+|+|+|||.+
T Consensus 82 mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~~hl~~~w~feI~KdW~~ 141 (141)
T 1kmt_A 82 MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWKD 141 (141)
T ss_dssp EEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEEEEESCC--
T ss_pred eeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCcEEEEEEEeEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999999999999974
No 4
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=90.01 E-value=2.4 Score=34.83 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=30.1
Q ss_pred ecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190 195 HEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR 236 (242)
Q Consensus 195 ~~fp~EeAPSGmLARG~Y~akSkFvDDDk~~hL~~ewsfeI~ 236 (242)
+.+|..+.|+ +|..|.|+++..+.| +++...=++-.|.|+
T Consensus 123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~-~~~~l~Ci~~~~~l~ 162 (164)
T 2ag4_A 123 FVVPDLELPS-WLTTGNYRIESVLSS-SGKRLGCIKIAASLK 162 (164)
T ss_dssp EEECCCCCCT-TCSSEEEEEEEEEEE-TTEEEEEEEEEEEEE
T ss_pred eecCcccccC-ccCCceEEEEEEEec-CCCEEEEEEEEEEEE
Confidence 5567778998 999999999999988 555554555566553
No 5
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=85.41 E-value=5.7 Score=31.10 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=64.1
Q ss_pred CceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEeccc--ccceeccC--CCC--CC--eeecCC-CCCCCcee
Q 026190 136 GNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSA--KQMLGTFS--PQP--EP--YIHEMP-EETTPSGM 206 (242)
Q Consensus 136 ~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~--e~miGSY~--P~~--e~--Y~~~fp-~EeAPSGm 206 (242)
..|=.|+-|..++|.|.|.-+.+ ++.|+-.=.++=.|+++-=. ..-.=++. |=. +. |++.+| +...|.
T Consensus 24 ~~pC~l~rG~~~~i~~~f~~~~~-~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CPl~~G~~~~y~~~~~v~~~~P~-- 100 (129)
T 1xwv_A 24 SDPCIIHRGKPFTLEALFDANQN-TKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPK-- 100 (129)
T ss_dssp TSCEEEETTSEEEEEEEEECCSC-BSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBCTTCEEEEEEEEECCTTSCC--
T ss_pred CCCCEEeCCCeEEEEEEEECCCc-cceEEEEEEEEEcCEEeecCCCCCCccCCccCcccCCEEEEEEEEeEecccCCC--
Confidence 45788999999999999998877 79999888888889887311 00000111 221 23 444565 334554
Q ss_pred eeeee-eeeeEEEEeCCCceEEEE-EEeEEeec
Q 026190 207 FARGS-YSARTKFLDDDNKCYLEI-NYSFDIRK 237 (242)
Q Consensus 207 LARG~-Y~akSkFvDDDk~~hL~~-ewsfeI~K 237 (242)
++ |.++-..+||++ ...=| .-.++|++
T Consensus 101 ---v~~~~v~~~L~d~~~-~l~Cf~~~~~~I~~ 129 (129)
T 1xwv_A 101 ---SENVVVTVKLVGDNG-VLACAIATHAKIRD 129 (129)
T ss_dssp ---BSCEEEEEEEEETTE-EEEEEEECCEEEEC
T ss_pred ---CceEEEEEEEEcCCC-cEEEEecccEEEeC
Confidence 57 999999999988 55556 66666654
No 6
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=80.42 E-value=3.6 Score=34.36 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=63.9
Q ss_pred eEEEEEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCC---eeecCCCC--CCCceeeeeeeeeeeEEEEe
Q 026190 146 KYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEP---YIHEMPEE--TTPSGMFARGSYSARTKFLD 220 (242)
Q Consensus 146 ~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~---Y~~~fp~E--eAPSGmLARG~Y~akSkFvD 220 (242)
.-.-+|.|.| .++|.++|-+|.++=+|-.+..-..-.|=-.|++.. ..+.+|++ --|. -..-|.-.+.++|+|
T Consensus 60 ~V~~~i~Fs~-~epi~nFRmierhyf~~~lle~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa-~~lsGnv~IeT~f~d 137 (152)
T 3t5g_B 60 AVSRELNFSS-TEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA-SVLTGNVIIETKFFD 137 (152)
T ss_dssp EEEEEEEEEE-SSCEEEEEEEEEEEETTEEEEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCH-HHHTTTEEEEEEEEE
T ss_pred hheEEEEEec-cccccccEEEEEEEEcCceeeeEeeeeeeEcCCCCcccceEEEcCCccccCCH-hHcCCcEEEEEEEec
Confidence 3455889999 799999999999999999998888888888898753 34555543 2232 233599999999999
Q ss_pred CCCceEEEEEE
Q 026190 221 DDNKCYLEINY 231 (242)
Q Consensus 221 DDk~~hL~~ew 231 (242)
+|.-+.-+--+
T Consensus 138 ~d~li~~s~vR 148 (152)
T 3t5g_B 138 DDLLVSTSRVR 148 (152)
T ss_dssp TTEEEEEEEEE
T ss_pred CCEEEEEeEEE
Confidence 99877654433
No 7
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=79.83 E-value=19 Score=28.04 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=63.9
Q ss_pred CceEEeccCCeEEEEEEEEEeceeeecceeEEEEEecceEec--ccc-cce--eccCCCC--CC--eeecCCC-CCCCce
Q 026190 136 GNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKVD--SAK-QML--GTFSPQP--EP--YIHEMPE-ETTPSG 205 (242)
Q Consensus 136 ~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK~GI~Vd--k~e-~mi--GSY~P~~--e~--Y~~~fp~-EeAPSG 205 (242)
..|=.|+-|..++|.|.|.-+.+ +++|+-.=.++=.||++- -.. .-- |..=|=. +. |++.+|. ...|.
T Consensus 25 ~~PC~l~rG~~~~i~i~f~~~~~-~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~lpV~~~~P~- 102 (130)
T 1nep_A 25 TQPCKLHRGQSYSVNVTFTSNTQ-SQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPS- 102 (130)
T ss_dssp SSSEEEETTCEEEEEEEEEESSC-BSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTSCS-
T ss_pred CCCCEEEcCCeEEEEEEEEcccc-cceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEEeEecccCCC-
Confidence 35678999999999999999877 577777666677888773 111 111 2222322 23 4555552 34554
Q ss_pred eeeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190 206 MFARGSYSARTKFLDDDNKCYLEINYSFDIR 236 (242)
Q Consensus 206 mLARG~Y~akSkFvDDDk~~hL~~ewsfeI~ 236 (242)
++|.++-..+|+++....=|.-.++|+
T Consensus 103 ----~~~~v~~~L~d~~~~~l~C~~~~~~I~ 129 (130)
T 1nep_A 103 ----IKVVVEWELTDDKNQRFFCWQIPIEVE 129 (130)
T ss_dssp ----SEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred ----ccEEEEEEEEcCCCCEEEEEEEeEEEE
Confidence 679999999999998766666666664
No 8
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=66.87 E-value=29 Score=28.17 Aligned_cols=105 Identities=8% Similarity=0.079 Sum_probs=61.7
Q ss_pred CCeEEEEEEEEEeC-CCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeceeeecceeEEEEEe-cceEecccccce
Q 026190 106 EPEVRILSLSIVAP-GRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWK-AGIKVDSAKQML 183 (242)
Q Consensus 106 ~p~V~I~~l~l~~e-gr~di~ldL~~~~~~k~~~F~IKEGs~Y~lki~FkVq~eIVsGLkY~q~VkK-~GI~Vdk~e~mi 183 (242)
...++|.++.|.-. |++. =++.-|..++|+|+|++..+ +..+..-=.+|. .|..|--...+.
T Consensus 45 sg~a~I~~v~l~d~~G~~~---------------~~~~~Ge~v~l~i~~~~~~~-i~~~v~G~~Ik~~~G~~I~g~nT~~ 108 (188)
T 2r5o_A 45 QGGAKIIDYHIQSAGVDFP---------------PSLTGNQQTDFLMKVVFEYD-FDCVVPGILIKTLDGLFLYGTNSFL 108 (188)
T ss_dssp CCSEEEEEEEEEETTEESC---------------SSEETTCEEEEEEEEEESSC-EEEEEEEEEEEETTCCEEEEEEHHH
T ss_pred CCcEEEEEEEEEECCCCEe---------------eEEeCCCEEEEEEEEEECCc-CCccEEEEEEECCCCCEEEecCccc
Confidence 35678888888654 3221 01556778888999999754 455554434444 487775554332
Q ss_pred eccCC-----CCCC-ee--ecCCCCCCCceeeeeeeeeeeEEEEeCC-CceEEEEEEe
Q 026190 184 GTFSP-----QPEP-YI--HEMPEETTPSGMFARGSYSARTKFLDDD-NKCYLEINYS 232 (242)
Q Consensus 184 GSY~P-----~~e~-Y~--~~fp~EeAPSGmLARG~Y~akSkFvDDD-k~~hL~~ews 232 (242)
-...+ ++.. +. |.|+ . .|.-|.|.+..-+.+.+ ...+..+.|-
T Consensus 109 ~~~~~~~~~~~~G~~~~v~f~f~---l---~L~~G~Y~lsv~i~~~~~~~~~~~~d~~ 160 (188)
T 2r5o_A 109 ASEGRENISVSRGDVRVFKFSLP---V---DLNSGDYLLSFGISAGNPQTDMTPLDRR 160 (188)
T ss_dssp HTTTCCCEEECTTCEEEEEEEEE---C---CBCSEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred ccccccccccCCCCEEEEEEEEe---c---ccCCCeEEEEEEEecCCcCCCcEEEEEE
Confidence 21222 2222 23 4444 2 48889999999988866 4455444443
No 9
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=55.01 E-value=6.4 Score=35.02 Aligned_cols=83 Identities=19% Similarity=0.301 Sum_probs=60.0
Q ss_pred EEEEEEeceeeecceeEEEEEecceEecccccceeccCCCCCC---eeecCC--CCCCCceeeeeeeeeee--EEEEeCC
Q 026190 150 KFTFEVSNNIVSGLKYTNTVWKAGIKVDSAKQMLGTFSPQPEP---YIHEMP--EETTPSGMFARGSYSAR--TKFLDDD 222 (242)
Q Consensus 150 ki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~miGSY~P~~e~---Y~~~fp--~EeAPSGmLARG~Y~ak--SkFvDDD 222 (242)
+|.|.|-.++|.+||-+|.++=+|..+..-.+-.|=--|++.. ..|.+| .+..|.-|+. |.|-.+ |.|.+||
T Consensus 146 ~i~Fsvgdkpv~nFRmiERhyFrd~lLksfDFeFGFcIPnS~NTWE~IyE~p~ls~~l~~emi~-~p~Et~sdSFYFvdd 224 (240)
T 4goj_C 146 TVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIR-HPYETQSDSFYFVDD 224 (240)
T ss_dssp EEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEEEEEECCCCCHHHHHHHHH-STTCEEEEEEEEETT
T ss_pred EEEEeeCceehhcceeeehhhhcccchheeccccceeccCCcccceeEEecCCcchhhHHHHHh-CCCceeeeeeEEECC
Confidence 3999998889999999999999999999999999988899863 456666 3344555555 888444 4444544
Q ss_pred C-ceEEEEEEeE
Q 026190 223 N-KCYLEINYSF 233 (242)
Q Consensus 223 k-~~hL~~ewsf 233 (242)
+ ..|=.-+|+|
T Consensus 225 kLvMHNKAdY~Y 236 (240)
T 4goj_C 225 RLVMHNKADYSY 236 (240)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEcchhhccc
Confidence 4 2344455555
No 10
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=43.28 E-value=51 Score=24.91 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=25.7
Q ss_pred eeeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190 206 MFARGSYSARTKFLDDDNKCYLEINYSFDIR 236 (242)
Q Consensus 206 mLARG~Y~akSkFvDDDk~~hL~~ewsfeI~ 236 (242)
-|.-|.|++.=+.+-.||+.- +=.|+|.++
T Consensus 75 ~L~~G~YtV~WrvvS~DGH~~-~G~~~FtV~ 104 (104)
T 1lyq_A 75 PLPAGTYRVDWRAVSSDTHPI-TGNYTFTVK 104 (104)
T ss_dssp CCCSEEEEEEEEECCTTSCCE-EEEEEEEEC
T ss_pred CCCCceEEEEEEEEecCCCcc-CCEEEEEEC
Confidence 477899999999999999987 778888764
No 11
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=40.01 E-value=69 Score=25.40 Aligned_cols=57 Identities=16% Similarity=0.324 Sum_probs=35.7
Q ss_pred eeEEEEEecceEecc--------cccceeccC---CCCCCeeecCC-CCCCCceeeeeeeeeeeEEEEeCCCceE
Q 026190 164 KYTNTVWKAGIKVDS--------AKQMLGTFS---PQPEPYIHEMP-EETTPSGMFARGSYSARTKFLDDDNKCY 226 (242)
Q Consensus 164 kY~q~VkK~GI~Vdk--------~e~miGSY~---P~~e~Y~~~fp-~EeAPSGmLARG~Y~akSkFvDDDk~~h 226 (242)
.=+|...|+=+--|. -+-.+|.++ |.. .|+|+.- .=.+|+| ..+|+|.. +++||..+
T Consensus 42 ~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe-~f~YtSg~~L~tp~G-~M~G~y~m----~~~~G~~F 110 (126)
T 1xvs_A 42 QTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKAND-EYTYSSGTALDTPVG-VMQGQYLM----IDEQGESF 110 (126)
T ss_dssp SCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTC-EEEEEEEEEESSSEE-EEEEEEEE----ECTTSCEE
T ss_pred CCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCC-ceEEeCCcCcCCCcE-EEEEEEEE----EECCCCEE
Confidence 345666666544342 234577776 654 6666654 3478999 67899996 57777643
No 12
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=29.77 E-value=1.9e+02 Score=22.07 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=44.6
Q ss_pred ccCCeEEEEEEEEEeceeeecce-----------eEEEEEecceEecccccceeccCCC--CCCee-ecCCCCCCCceee
Q 026190 142 KEGSKYSLKFTFEVSNNIVSGLK-----------YTNTVWKAGIKVDSAKQMLGTFSPQ--PEPYI-HEMPEETTPSGMF 207 (242)
Q Consensus 142 KEGs~Y~lki~FkVq~eIVsGLk-----------Y~q~VkK~GI~Vdk~e~miGSY~P~--~e~Y~-~~fp~EeAPSGmL 207 (242)
+-|...++++ .|+|---+||+ |+|.+. +..+-...+=-+.+|. .+||. |.|...++
T Consensus 15 ~~g~~~~vk~--~I~HPMetGl~~d~~g~~IPa~~I~~v~---~~~ng~~v~~~~~~~~iS~NP~~~F~~~~~~~----- 84 (108)
T 2oxg_Z 15 KAGETVTVKA--LISHKMESGQRKDADGKLIPRSIINRFT---CELNGVNVVDVAIDPAVSTNPYFEFDAKVDAA----- 84 (108)
T ss_dssp CTTEEEEEEE--EECCCCBCSCCBCTTSCBCCCBCEEEEE---EEETTEEEEEEEECTTBCSSCEEEEEEEECSS-----
T ss_pred cCCCCEEEEE--EeECCCccccccCcCCCccchHheEEEE---EEECCEEEEEEEeCCccccCCeEEEEEecCCC-----
Confidence 4555555444 68888888866 777664 2222222232344444 36764 76654332
Q ss_pred eeeeeeeeEEEEeCCCceEEEEEEe
Q 026190 208 ARGSYSARTKFLDDDNKCYLEINYS 232 (242)
Q Consensus 208 ARG~Y~akSkFvDDDk~~hL~~ews 232 (242)
| ..+...+|++|..+ +-++.
T Consensus 85 --g--~l~v~~~Dn~G~~~-~~~~~ 104 (108)
T 2oxg_Z 85 --G--EFKFTWYDDDGSVY-EDVKP 104 (108)
T ss_dssp --E--EEEEEEEETTSCEE-EEEEE
T ss_pred --c--EEEEEEEECCCCEE-EEEEE
Confidence 4 56789999999977 43433
No 13
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=26.39 E-value=1.4e+02 Score=23.81 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=35.2
Q ss_pred eeEEEEEecceEecc--------cccceeccC---CCCCCeeecCC-CCCCCceeeeeeeeeeeEEEEeCCCceE
Q 026190 164 KYTNTVWKAGIKVDS--------AKQMLGTFS---PQPEPYIHEMP-EETTPSGMFARGSYSARTKFLDDDNKCY 226 (242)
Q Consensus 164 kY~q~VkK~GI~Vdk--------~e~miGSY~---P~~e~Y~~~fp-~EeAPSGmLARG~Y~akSkFvDDDk~~h 226 (242)
.=+|...|+=+-.|. -+-.+|.++ |.. .|+|+.- .=.+|+| ..+|+|.. +++||..+
T Consensus 42 ~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe-~F~YtSg~~L~Tp~G-~M~G~y~m----~~~~G~~F 110 (134)
T 1tza_A 42 QAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNT-AYQYTSGTVLDTPFG-IMYGTYGM----VSESGEHF 110 (134)
T ss_dssp SCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTE-EEEEEEEEEESSSEE-EEEEEEEE----EETTCCEE
T ss_pred CCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCC-ceEEcCCcCcCCCce-EEEEEEEE----EECCCCEE
Confidence 345666665543342 234567776 554 5666654 3467999 67999996 46777644
No 14
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=25.87 E-value=2e+02 Score=22.69 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=35.1
Q ss_pred eeEEEEEecceEecc--------cccceeccC---CCCCCeeecCC-CCCCCceeeeeeeeeeeEEEEeCCCceE
Q 026190 164 KYTNTVWKAGIKVDS--------AKQMLGTFS---PQPEPYIHEMP-EETTPSGMFARGSYSARTKFLDDDNKCY 226 (242)
Q Consensus 164 kY~q~VkK~GI~Vdk--------~e~miGSY~---P~~e~Y~~~fp-~EeAPSGmLARG~Y~akSkFvDDDk~~h 226 (242)
.=+|...|+=+--|. -+-.+|.++ |.. .|+|+.- .=.+|+| ..+|+|.. +++||..+
T Consensus 43 ~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe-~f~YtSg~~L~tp~G-~M~G~y~m----~~~~G~~F 111 (127)
T 2f1e_A 43 VPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGE-AFHYTSGVLLETEQG-QMQGHYDM----VADDGTEF 111 (127)
T ss_dssp SCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEECTTC-EEEEEEEEEESSSCE-EEEEEEEE----EETTCCEE
T ss_pred CCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCCCCC-ceEEeCCcCcCCCcE-EEEEEEEE----EECCCCEE
Confidence 445666666544343 234467776 543 5666544 3468999 67899996 57777643
No 15
>3nkg_A Uncharacterized protein GEBA250068378; GEBA target, BATA-fold, structural genomics, PSI-2, protein initiative; 2.00A {Sulfurospirillum deleyianum}
Probab=24.71 E-value=28 Score=29.48 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=28.3
Q ss_pred CCeEE--eCCCCCCCCCceEEeccCCeEEEEEEEEEece
Q 026190 122 NDIVL--AVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNN 158 (242)
Q Consensus 122 ~di~l--dL~~~~~~k~~~F~IKEGs~Y~lki~FkVq~e 158 (242)
.+|.+ +|+..++--...|.|.|--.|.+.+.|.|+.+
T Consensus 5 ~pi~~pidlsqagsv~e~e~~i~e~~~y~l~l~F~v~dr 43 (174)
T 3nkg_A 5 NPISIPIDLSQAGSVVEKEVKIEESWSYHLILQFAVHDR 43 (174)
T ss_dssp CCEEEEECTTSTTEEEEEEEEECSSEEEEEEEEECCCCT
T ss_pred CceeeecChhhCcceeeeeeecccceeeeEEEEEEEccC
Confidence 34554 44555555667899999999999999999765
No 16
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=20.88 E-value=1e+02 Score=23.06 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=25.7
Q ss_pred eeeeeeeeeeEEEEeCCCceEEEEEEeEEee
Q 026190 206 MFARGSYSARTKFLDDDNKCYLEINYSFDIR 236 (242)
Q Consensus 206 mLARG~Y~akSkFvDDDk~~hL~~ewsfeI~ 236 (242)
-|.-|.|++.=+.+-.||+.- +=.|+|.++
T Consensus 73 ~L~~G~YtV~WrvvS~DGH~~-~G~~~FtV~ 102 (102)
T 2c9r_A 73 PLTAGTYKVDWRAVSSDTFPI-TGSVTFKVK 102 (102)
T ss_dssp CCCSEEEEEEEEECCTTCCCE-EEEEEEEEC
T ss_pred CCCCceEEEEEEEEecCCCcc-CCEEEEEEC
Confidence 577899999999999999986 778888764
No 17
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=20.24 E-value=61 Score=24.25 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=20.8
Q ss_pred cccccceeccCCCCCCe--eecCCCCCCCceeeeeeeeeee
Q 026190 177 DSAKQMLGTFSPQPEPY--IHEMPEETTPSGMFARGSYSAR 215 (242)
Q Consensus 177 dk~e~miGSY~P~~e~Y--~~~fp~EeAPSGmLARG~Y~ak 215 (242)
...+..|-||-|+.||- .+..-.+.--.=++.||+|-|-
T Consensus 13 rqqnrpvisyvprvepapp~ha~kmd~frdvw~lrgkyvaf 53 (87)
T 2bn8_A 13 RQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVAF 53 (87)
T ss_dssp --------CCCCCCCCBTTBSCBCTTTCTTEEEETTEEEEB
T ss_pred HhcCCcceeeccCCCCCCchHhhhcccchhheeeccceEEE
Confidence 34455677999999862 2333334444568999999873
No 18
>4gbs_A Putative lipoprotein; PF14064 family, transport, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MLY; 2.48A {Bacteroides fragilis}
Probab=20.13 E-value=96 Score=25.34 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=17.3
Q ss_pred eeeeeeEEEE----eCCCceEEEEEEeEEe
Q 026190 210 GSYSARTKFL----DDDNKCYLEINYSFDI 235 (242)
Q Consensus 210 G~Y~akSkFv----DDDk~~hL~~ewsfeI 235 (242)
|+| ||.+|+ |.+...|++|+|-|-+
T Consensus 170 G~Y-aKlq~~syyn~~g~~g~~tF~Y~yp~ 198 (200)
T 4gbs_A 170 DTM-AAIRLVSYMNAAGIXGYMTFDYIYPY 198 (200)
T ss_dssp SCE-EEEEEEEEECTTCCEEEEEEEEESSC
T ss_pred CCE-EEEEEEEeECCCCceeeEEEEEEeec
Confidence 776 566544 3556689999998744
Done!