BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026191
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|1XM8|B Chain B, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|2Q42|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
pdb|2Q42|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
Length = 254
Score = 243 bits (621), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 126/156 (80%)
Query: 76 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXX 135
+QIELVPCL+DNYAY+LHD DTGTVGVVDPSEA P+ID+L R RNLTYI
Sbjct: 1 MQIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHT 60
Query: 136 XXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFY 195
ELK RYGAKVIGS +DKDRIPGID+ L DGDKWMFAGHEVHV+DTPGHT+GHIS Y
Sbjct: 61 GGNLELKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLY 120
Query: 196 FPGSAAVFTGDTLFSLSCGKLFEGTPGQLIVYVTDV 231
FPGS A+FTGDT+FSLSCGKLFEGTP Q++ + +
Sbjct: 121 FPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKI 156
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
Glyoxalase Ii
Length = 258
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 75 SLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXX 134
S+ + +P +DNY ++L + D G +VDP EA PV+ A++ I
Sbjct: 7 SMNLNSIPAFQDNYIWVLTN-DEGRCVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDH 65
Query: 135 XXXXXELKARY-GAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHIS 193
EL + V G +D+ G ++ DGD G + + TPGHT GH+
Sbjct: 66 VGGVKELLQHFPQMTVYGPAETQDK--GATHLVGDGDTIRVLGEKFTLFATPGHTLGHVC 123
Query: 194 FYFPGSAAVFTGDTLFSLSCGKLFEGTPGQL 224
++ +F GDTLFS CG+LFEGTP Q+
Sbjct: 124 YF--SRPYLFCGDTLFSGGCGRLFEGTPSQM 152
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 76 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXX 135
+++E++P L DNY YL+ D +T +VDP + V+DA + LT +
Sbjct: 1 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHA 60
Query: 136 XXXXEL-KARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISF 194
+L K G KV G DRI + + V + TP HT GHI +
Sbjct: 61 GGNEKLVKLESGLKVYGG---DDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICY 117
Query: 195 YF--PGSA---AVFTGDTLFSLSCGKLFEGTPGQLIVYVTDVF 232
+ PG + AVFTGDTLF CGK +EGT ++ + +V
Sbjct: 118 FVSKPGGSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVL 160
>pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
pdb|2P1E|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
With D- Lactate At The Active Site
Length = 311
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 22/185 (11%)
Query: 56 LASRSLRVAEFCSISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVD-PSEAVPVIDA 114
L R + +C+ S+ + +VP L+DN++YL++D T T+ VD ++ P++
Sbjct: 10 LVPRGSHMRNYCT-KTFGSAFSVTVVPTLKDNFSYLINDHTTHTLAAVDVNADYKPILTY 68
Query: 115 LSRK-----NRNLTY----IXXXXXXXXXXXXXXELKARYGA-----KVIGSGVDKDRIP 160
+ N ++TY I +LKA A V+ G D IP
Sbjct: 69 IEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVGGANDSIP 128
Query: 161 GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISF-----YFPGSA-AVFTGDTLFSLSCG 214
+ + +GD+ V VID P HTRGH+ + P A+FTGDT+F G
Sbjct: 129 AVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMFIAGIG 188
Query: 215 KLFEG 219
FEG
Sbjct: 189 AFFEG 193
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Ycbl
Length = 210
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 140 ELKARYGAKVIGS------------------GVDKDRIPGIDIVLNDGDKWMFAGHEVHV 181
EL YG VIG G+D+ + D LNDGD+ + V
Sbjct: 67 ELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQV 126
Query: 182 IDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGK--LFEGTPGQLIVYVTDVFFPSEDNV 239
+ PGHT GH+ F+ S + +GD +F G+ G QLI + P D+V
Sbjct: 127 LHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSDFPRGDHTQLIDAIKRKLLPLGDDV 186
Query: 240 S 240
+
Sbjct: 187 T 187
>pdb|2ZWR|A Chain A, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZWR|B Chain B, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZZI|A Chain A, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
pdb|2ZZI|B Chain B, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
Length = 207
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 180 HVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGK 215
V+ PGH+ GH++FY P A VF+GD LF S G+
Sbjct: 118 QVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGR 153
>pdb|2ZO4|A Chain A, Crystal Structure Of Metallo-Beta-Lactamase Family Protein
Ttha1429 From Thermus Thermophilus Hb8
Length = 317
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 156 KDRI--PGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFS 210
++R+ P + L DG+ AG + V+ TPGH GH +FY + GD L
Sbjct: 138 RERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDALLE 194
>pdb|2GCU|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
Length = 245
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 20/109 (18%)
Query: 145 YGAKVIGSGVDKDRIPGI------------DIVLNDGDKWMFAGHEVHVIDTPGHTRGHI 192
+ V G+G+ K ++PG+ D+ L GDK + V TPGHT G +
Sbjct: 63 HADHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGCV 122
Query: 193 SFYF------PGSAAVFTGDTLFSLSCGK--LFEGTPGQLIVYVTDVFF 233
++ P FTGD + CG+ EG+ QL V F
Sbjct: 123 TYVTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIF 171
>pdb|4AD9|A Chain A, Crystal Structure Of Human Lactb2.
pdb|4AD9|B Chain B, Crystal Structure Of Human Lactb2.
pdb|4AD9|C Chain C, Crystal Structure Of Human Lactb2.
pdb|4AD9|D Chain D, Crystal Structure Of Human Lactb2.
pdb|4AD9|E Chain E, Crystal Structure Of Human Lactb2.
pdb|4AD9|F Chain F, Crystal Structure Of Human Lactb2
Length = 289
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 164 IVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLF 209
+ L DGD G + V+ TPGHT H++ A+F+GD +
Sbjct: 123 VYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCIL 168
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 165 VLNDGDKWMFAGHEVHVIDTPGHTRGHISF-YFPGSA------AVFTGDTLFSLSCGK-- 215
+L DGD+ F + V TPGHT H+S+ + G A+F+GD +F G+
Sbjct: 101 LLKDGDELHFGNVRIVVXHTPGHTPEHVSYLLYDGKTSPDVPXALFSGDFVFVGDVGRPD 160
Query: 216 LFEGTPGQ 223
L E G+
Sbjct: 161 LLERVAGE 168
>pdb|2VW8|A Chain A, Crystal Structure Of Quinolone Signal Response Protein
Pqse From Pseudomonas Aeruginosa
Length = 303
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 168 DGDKWMFAG--HEVHVIDTPGHTRGHISFYFPGSAAVFTGDTL 208
DG+ W+ G H + VI+ GH+ H+ FY +F GD L
Sbjct: 141 DGE-WLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDAL 182
>pdb|2Q0I|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 303
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 168 DGDKWMFAG--HEVHVIDTPGHTRGHISFYFPGSAAVFTGDTL 208
DG+ W+ G H + VI+ GH+ H+ FY +F GD L
Sbjct: 141 DGE-WLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDAL 182
>pdb|3DH8|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 303
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 168 DGDKWMFAG--HEVHVIDTPGHTRGHISFYFPGSAAVFTGDTL 208
DG+ W+ G H + VI+ GH+ H+ FY +F GD L
Sbjct: 141 DGE-WLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDAL 182
>pdb|2Q0J|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
pdb|2Q0J|B Chain B, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 321
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 168 DGDKWMFAG--HEVHVIDTPGHTRGHISFYFPGSAAVFTGDTL 208
DG+ W+ G H + VI+ GH+ H+ FY +F GD L
Sbjct: 159 DGE-WLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDAL 200
>pdb|3ADR|A Chain A, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
pdb|3ADR|B Chain B, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
Length = 261
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 154 VDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSC 213
+D+D++ I + +++ G+ +I TPGH R H S +FTGD+ +
Sbjct: 119 LDQDKV----IEVEGNEEFDLGGYRXRLIYTPGHARHHXSVLV--DDFLFTGDSAGAYFN 172
Query: 214 GKLFEGTP 221
G + TP
Sbjct: 173 GVVIPTTP 180
>pdb|4EFZ|A Chain A, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
pdb|4EFZ|B Chain B, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
Length = 298
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 163 DIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--------GSAAVFTGDTLF 209
D +L+DGD + + TPGHT +++ AA F GDTLF
Sbjct: 123 DRLLDDGDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDARDAAAFVGDTLF 177
>pdb|1L9Y|A Chain A, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
pdb|1L9Y|B Chain B, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
Length = 263
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 162 IDIVLNDGDKWMFAGHEVHVIDTPGHTRG 190
+D VL+DG++ G + TPGHTRG
Sbjct: 124 VDKVLHDGERVELGGTVLTAHLTPGHTRG 152
>pdb|1JT1|A Chain A, Fez-1 Metallo-Beta-Lactamase From Legionella Gormanii
Modelled With D- Captopril
pdb|1K07|A Chain A, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
pdb|1K07|B Chain B, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
Length = 263
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 162 IDIVLNDGDKWMFAGHEVHVIDTPGHTRG 190
+D VL+DG++ G + TPGHTRG
Sbjct: 124 VDKVLHDGERVELGGTVLTAHLTPGHTRG 152
>pdb|1ZTC|A Chain A, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|B Chain B, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|C Chain C, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|D Chain D, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
Length = 221
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 163 DIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAA---VFTGD 206
++VL G++ +F +V V TP H R H+SF A + TGD
Sbjct: 129 NVVLLKGEESLF-DEKVKVFHTPWHAREHLSFLLDTENAGRVLITGD 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,642,429
Number of Sequences: 62578
Number of extensions: 252617
Number of successful extensions: 719
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 21
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)