Query 026191
Match_columns 242
No_of_seqs 202 out of 1656
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02398 hydroxyacylglutathion 100.0 7.2E-45 1.6E-49 316.8 20.3 237 1-238 1-238 (329)
2 PLN02469 hydroxyacylglutathion 100.0 2.1E-32 4.5E-37 232.9 20.9 161 76-238 1-167 (258)
3 TIGR03413 GSH_gloB hydroxyacyl 100.0 1.2E-31 2.6E-36 227.4 19.9 157 79-238 2-158 (248)
4 PRK10241 hydroxyacylglutathion 100.0 3.5E-30 7.6E-35 218.7 19.3 158 76-238 1-159 (251)
5 KOG0813 Glyoxylase [General fu 100.0 9.5E-29 2.1E-33 206.8 16.1 156 81-238 7-171 (265)
6 PLN02962 hydroxyacylglutathion 100.0 1.9E-27 4E-32 201.3 20.3 149 86-237 22-184 (251)
7 COG0491 GloB Zn-dependent hydr 99.9 2.1E-20 4.6E-25 156.5 17.2 151 86-237 24-202 (252)
8 PRK11921 metallo-beta-lactamas 99.8 1.2E-20 2.6E-25 170.1 13.8 128 81-211 27-167 (394)
9 smart00849 Lactamase_B Metallo 99.8 1.2E-19 2.5E-24 145.3 16.3 150 87-238 6-178 (183)
10 PRK05452 anaerobic nitric oxid 99.8 9.8E-20 2.1E-24 167.5 12.1 125 84-211 32-171 (479)
11 KOG0814 Glyoxylase [General fu 99.8 1.7E-19 3.7E-24 140.8 11.4 149 86-238 20-174 (237)
12 PF00753 Lactamase_B: Metallo- 99.8 1.2E-18 2.6E-23 139.4 11.5 153 86-240 5-191 (194)
13 COG0426 FpaA Uncharacterized f 99.8 1.5E-17 3.2E-22 146.5 13.8 143 84-229 33-189 (388)
14 TIGR00649 MG423 conserved hypo 99.7 7.7E-17 1.7E-21 146.7 14.2 136 87-224 14-176 (422)
15 PRK11539 ComEC family competen 99.7 5.8E-16 1.3E-20 149.9 15.9 127 74-208 499-641 (755)
16 TIGR00361 ComEC_Rec2 DNA inter 99.7 1.1E-15 2.4E-20 146.1 15.8 131 75-209 439-585 (662)
17 COG2333 ComEC Predicted hydrol 99.7 1.7E-15 3.6E-20 130.3 14.0 133 76-211 44-195 (293)
18 PF14597 Lactamase_B_5: Metall 99.7 3.4E-15 7.4E-20 117.6 14.3 139 88-235 24-171 (199)
19 TIGR03675 arCOG00543 arCOG0054 99.5 1.6E-13 3.5E-18 129.9 9.5 134 74-210 173-350 (630)
20 COG0595 mRNA degradation ribon 99.4 1.1E-12 2.4E-17 121.6 12.9 161 75-237 8-198 (555)
21 PRK00685 metal-dependent hydro 99.4 9.4E-13 2E-17 109.9 8.8 119 88-210 9-146 (228)
22 TIGR03307 PhnP phosphonate met 99.4 7E-12 1.5E-16 105.6 11.9 115 89-209 29-155 (238)
23 PRK11244 phnP carbon-phosphoru 99.4 9E-12 2E-16 105.7 12.0 115 89-209 39-165 (250)
24 PRK04286 hypothetical protein; 99.3 8.8E-12 1.9E-16 108.5 11.7 120 87-208 15-187 (298)
25 PRK02113 putative hydrolase; P 99.3 1.3E-11 2.8E-16 104.8 11.4 115 88-209 36-172 (252)
26 PRK02126 ribonuclease Z; Provi 99.3 2.6E-11 5.7E-16 107.0 11.9 69 84-156 14-87 (334)
27 PRK05184 pyrroloquinoline quin 99.3 2.1E-11 4.6E-16 106.3 10.4 117 88-207 40-199 (302)
28 TIGR02108 PQQ_syn_pqqB coenzym 99.3 3.4E-11 7.3E-16 104.9 10.4 119 89-208 40-200 (302)
29 TIGR02651 RNase_Z ribonuclease 99.2 4.9E-11 1.1E-15 103.6 9.1 105 88-197 19-147 (299)
30 PF12706 Lactamase_B_2: Beta-l 99.2 2.2E-11 4.8E-16 98.7 6.2 109 100-209 2-140 (194)
31 COG1782 Predicted metal-depend 99.2 3.4E-11 7.4E-16 108.0 7.4 134 74-211 179-357 (637)
32 TIGR02649 true_RNase_BN ribonu 99.2 1.4E-10 3.1E-15 101.1 11.0 107 88-197 18-149 (303)
33 COG1236 YSH1 Predicted exonucl 99.2 5.6E-11 1.2E-15 108.2 8.4 117 89-209 16-166 (427)
34 COG1237 Metal-dependent hydrol 99.1 3.8E-10 8.3E-15 94.2 7.2 70 86-157 21-96 (259)
35 PRK00055 ribonuclease Z; Revie 99.0 4.2E-10 9E-15 96.0 5.5 67 87-157 20-96 (270)
36 KOG1136 Predicted cleavage and 98.9 3.7E-09 8.1E-14 90.9 7.9 133 76-211 4-183 (501)
37 PRK11709 putative L-ascorbate 98.9 9.6E-09 2.1E-13 91.3 9.7 91 120-210 108-231 (355)
38 COG2015 Alkyl sulfatase and re 98.9 2.6E-09 5.7E-14 95.7 5.5 153 84-238 123-339 (655)
39 PF13483 Lactamase_B_3: Beta-l 98.7 6.2E-08 1.3E-12 76.8 8.9 127 84-232 5-155 (163)
40 COG2220 Predicted Zn-dependent 98.4 3.5E-06 7.5E-11 71.8 11.3 129 75-209 6-162 (258)
41 KOG1137 mRNA cleavage and poly 98.4 3.3E-07 7.1E-12 83.4 4.6 119 89-210 29-185 (668)
42 KOG1135 mRNA cleavage and poly 98.3 5.3E-06 1.1E-10 77.4 10.8 119 88-209 16-174 (764)
43 COG1234 ElaC Metal-dependent h 98.3 2.3E-06 5E-11 74.4 7.1 64 89-156 22-95 (292)
44 KOG4736 Uncharacterized conser 98.3 1.2E-06 2.5E-11 74.5 4.9 112 89-211 97-215 (302)
45 COG1235 PhnP Metal-dependent h 98.2 3.1E-06 6.8E-11 72.6 5.5 54 99-154 41-95 (269)
46 COG2248 Predicted hydrolase (m 98.1 2.7E-05 5.9E-10 65.0 10.4 148 89-238 17-241 (304)
47 TIGR02650 RNase_Z_T_toga ribon 98.0 1.3E-05 2.8E-10 68.6 6.8 58 98-157 18-84 (277)
48 KOG1361 Predicted hydrolase in 97.3 0.00031 6.7E-09 64.2 5.2 87 121-210 112-208 (481)
49 PF02112 PDEase_II: cAMP phosp 96.8 0.0032 6.9E-08 55.6 6.1 38 121-158 79-122 (335)
50 KOG2121 Predicted metal-depend 92.5 0.074 1.6E-06 50.9 2.0 55 89-144 463-524 (746)
51 COG5212 PDE1 Low-affinity cAMP 91.5 0.19 4E-06 43.0 3.2 38 121-158 112-153 (356)
52 PF14234 DUF4336: Domain of un 91.3 3 6.4E-05 36.2 10.4 122 89-211 22-162 (285)
53 KOG3798 Predicted Zn-dependent 91.3 0.81 1.7E-05 38.8 6.6 92 120-211 131-243 (343)
54 PF13691 Lactamase_B_4: tRNase 91.2 0.59 1.3E-05 30.9 4.7 47 89-137 14-63 (63)
55 KOG3592 Microtubule-associated 85.1 1.1 2.5E-05 43.1 4.0 53 89-144 50-104 (934)
56 PF14572 Pribosyl_synth: Phosp 69.7 15 0.00032 29.8 5.7 50 102-153 92-143 (184)
57 PRK02458 ribose-phosphate pyro 41.5 63 0.0014 28.5 5.4 54 98-154 219-279 (323)
58 PRK13663 hypothetical protein; 41.3 1.1E+02 0.0025 28.1 6.9 80 108-190 94-181 (493)
59 PRK04923 ribose-phosphate pyro 36.9 83 0.0018 27.7 5.4 56 97-154 217-278 (319)
60 COG4566 TtrR Response regulato 34.8 79 0.0017 25.9 4.5 43 98-141 49-95 (202)
61 PF06415 iPGM_N: BPG-independe 32.8 16 0.00035 30.5 0.3 26 128-153 41-67 (223)
62 KOG1138 Predicted cleavage and 32.6 91 0.002 29.4 5.0 59 96-157 71-132 (653)
63 PRK00553 ribose-phosphate pyro 32.6 1.2E+02 0.0025 27.0 5.6 56 96-153 217-282 (332)
64 COG0462 PrsA Phosphoribosylpyr 30.9 1.2E+02 0.0025 26.8 5.2 63 89-153 206-274 (314)
65 PF08149 BING4CT: BING4CT (NUC 28.7 1.1E+02 0.0024 21.2 3.8 52 185-241 26-77 (80)
66 PRK02269 ribose-phosphate pyro 28.3 2.1E+02 0.0046 25.1 6.6 50 102-154 226-278 (320)
67 COG1107 Archaea-specific RecJ- 27.7 46 0.001 31.9 2.3 37 100-136 421-458 (715)
68 COG2877 KdsA 3-deoxy-D-manno-o 27.1 49 0.0011 28.0 2.2 40 97-136 189-245 (279)
69 PF01339 CheB_methylest: CheB 25.1 1.2E+02 0.0025 24.3 4.0 79 106-184 9-91 (182)
70 PRK07199 phosphoribosylpyropho 25.1 1.4E+02 0.003 26.1 4.8 54 98-153 212-271 (301)
71 PTZ00145 phosphoribosylpyropho 24.7 1.4E+02 0.0031 27.6 4.9 51 102-154 344-396 (439)
72 KOG1448 Ribose-phosphate pyrop 24.1 1.8E+02 0.0039 25.5 5.1 51 88-140 205-260 (316)
73 COG4868 Uncharacterized protei 23.2 2.5E+02 0.0055 25.1 5.8 55 110-166 96-153 (493)
74 TIGR01530 nadN NAD pyrophospha 23.0 5E+02 0.011 24.7 8.5 41 109-153 72-115 (550)
75 PF10411 DsbC_N: Disulfide bon 21.7 1.1E+02 0.0023 19.4 2.6 20 190-209 33-52 (57)
76 PF13174 TPR_6: Tetratricopept 20.2 47 0.001 17.4 0.6 20 219-238 14-33 (33)
No 1
>PLN02398 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=7.2e-45 Score=316.81 Aligned_cols=237 Identities=81% Similarity=1.276 Sum_probs=220.9
Q ss_pred CchhhhhhhcceeeeeeccCC-CccccCCCccceeccCceeeeeehhccCCcccccccccceeeeeeeecccCCccceEE
Q 026191 1 MQMISRASSAAMASFTCSRGQ-SGLCVVPGPRQLCLRKGLLYGFMRLLSMPFKTLHLASRSLRVAEFCSISNMSSSLQIE 79 (242)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~v~~~~~~~~~~~~~~i~ 79 (242)
|||||-||| +++...|++.+ +..+.+|..|+.+.+++++++.+.++.+|+++..+.++...+.+++....++..+++.
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 79 (329)
T PLN02398 1 MQMISKASS-AMSSFRCSRRIRGQLCVRPGVRQLCLRKSLLYGVMKLLSMPLKTLRGAGRTLKVAQFCSVSNVSSSLQIE 79 (329)
T ss_pred Ccchhhhhh-ccccCcchhhhcCcccccchhhhhhcccchhHHHHHHHhCchhhccccchhhhhhhhhcccCCCCCcEEE
Confidence 899999999 78888887766 7788999999999999999999999999999999999999999998877787789999
Q ss_pred EeccccceeEEEEEECCCCeEEEEcCCCcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcCCEEEeccccccCC
Q 026191 80 LVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRI 159 (242)
Q Consensus 80 ~~~~~~~~~~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~ 159 (242)
.+|.+.+||+|||.+++++++++|||+..+.+++++++.+.+|++|++||.|+||+||+.++.+.++++||++..+.+.+
T Consensus 80 ~ip~l~dNy~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~ga~V~g~~~~~~~i 159 (329)
T PLN02398 80 LVPCLKDNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARYGAKVIGSAVDKDRI 159 (329)
T ss_pred EEeeeCceEEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhcCCEEEEehHHhhhc
Confidence 99999999999999877889999999999999999999999999999999999999999999999999999998877777
Q ss_pred CCccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeCCCcEEEEcccccccccCCCCCCCHHHHHHHHHHhcCCCCCC
Q 026191 160 PGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQLIVYVTDVFFPSEDN 238 (242)
Q Consensus 160 ~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~ 238 (242)
+..+..+.+|+.+.+|+.+++++++||||+||++|++++.++||+||++|..++|++++++.++|++|++++.++.++.
T Consensus 160 ~~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI~~~~~~~~vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~~L~~~t 238 (329)
T PLN02398 160 PGIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDT 238 (329)
T ss_pred cCCcEEeCCCCEEEECCeEEEEEeCCCcCCCCEEEEECCCCEEEECCCcCCCCcCCCCCCCHHHHHHHHHHHHcCCCCe
Confidence 7778899999999999999999999999999999999888899999999999999999999999999999999876654
No 2
>PLN02469 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=2.1e-32 Score=232.89 Aligned_cols=161 Identities=41% Similarity=0.702 Sum_probs=140.6
Q ss_pred ceEEEeccccceeEEEEEECCCCeEEEEcCCCcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhc-CCEEEeccc
Q 026191 76 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGV 154 (242)
Q Consensus 76 ~~i~~~~~~~~~~~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~-~~~i~~~~~ 154 (242)
|++..+|.+.+|++|||.+.+++++++|||+..+.+++.+++.+.+|++|++||.|+||+||+..+++.+ +++||++..
T Consensus 1 ~~i~~~~~~~dNy~Yli~d~~~~~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~ 80 (258)
T PLN02469 1 MKIIPVPCLEDNYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSL 80 (258)
T ss_pred CeEEEeccccceEEEEEEeCCCCeEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEech
Confidence 3567778888988999998777889999999988899999999999999999999999999999999987 699998865
Q ss_pred cccCCCCccEEecCCCEEEECC-eEEEEEEcCCCCCCCEEEEeCC----CcEEEEcccccccccCCCCCCCHHHHHHHHH
Q 026191 155 DKDRIPGIDIVLNDGDKWMFAG-HEVHVIDTPGHTRGHISFYFPG----SAAVFTGDTLFSLSCGKLFEGTPGQLIVYVT 229 (242)
Q Consensus 155 ~~~~~~~~~~~~~~g~~~~~g~-~~i~~~~~pgHt~gs~~~~~~~----~~vlftGD~~~~~~~~~~~~~~~~~~~~sl~ 229 (242)
+. .+.....+.+|+.+.+|+ ..+++++|||||+||++|++++ .++|||||++|.+++|++++++.++|.+|++
T Consensus 81 ~~--~~~~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~Gr~~~g~~~~~~~Sl~ 158 (258)
T PLN02469 81 DN--VKGCTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKFFEGTAEQMYQSLC 158 (258)
T ss_pred hc--CCCCCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcCCCCCCCHHHHHHHHH
Confidence 42 334467889999999986 5899999999999999999863 4699999999999999999999999999999
Q ss_pred HhcCCCCCC
Q 026191 230 DVFFPSEDN 238 (242)
Q Consensus 230 ~l~~~~~~~ 238 (242)
+++..+|+.
T Consensus 159 ~~l~~Lp~~ 167 (258)
T PLN02469 159 VTLGSLPKP 167 (258)
T ss_pred HHHHcCCCC
Confidence 876655544
No 3
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=100.00 E-value=1.2e-31 Score=227.36 Aligned_cols=157 Identities=50% Similarity=0.842 Sum_probs=142.3
Q ss_pred EEeccccceeEEEEEECCCCeEEEEcCCCcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcCCEEEeccccccC
Q 026191 79 ELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDR 158 (242)
Q Consensus 79 ~~~~~~~~~~~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~ 158 (242)
..+|.+++|++|||.+++ ++.++||+|....+.++|++.|.++++|++||.|+||+||+..+.+.++++||+++.+ .
T Consensus 2 ~~~~~~~dN~~yli~~~~-~~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~~~V~~~~~~--~ 78 (248)
T TIGR03413 2 IPIPALSDNYIWLLHDPD-GQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEE--R 78 (248)
T ss_pred EEecccccEEEEEEEcCC-CCEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCCCeEEecccc--c
Confidence 457788999999998865 6899999998888999999999899999999999999999999999889999998765 3
Q ss_pred CCCccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeCCCcEEEEcccccccccCCCCCCCHHHHHHHHHHhcCCCCCC
Q 026191 159 IPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQLIVYVTDVFFPSEDN 238 (242)
Q Consensus 159 ~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~ 238 (242)
++.....+.+|+.+.+|+.+++++++|||++||++|++++.++||+||++|..++|++++++.++|.+|++++.++.++.
T Consensus 79 ~~~~~~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~~~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~ 158 (248)
T TIGR03413 79 IPGITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLPDSPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDT 158 (248)
T ss_pred CCCCcEEeCCCCEEEECCEEEEEEECCCCCcccEEEEECCCCEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCe
Confidence 45557789999999999999999999999999999999988999999999999999999999999999999998876654
No 4
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.97 E-value=3.5e-30 Score=218.72 Aligned_cols=158 Identities=40% Similarity=0.710 Sum_probs=139.8
Q ss_pred ceEEEeccccceeEEEEEECCCCeEEEEcCCCcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhc-CCEEEeccc
Q 026191 76 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGV 154 (242)
Q Consensus 76 ~~i~~~~~~~~~~~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~-~~~i~~~~~ 154 (242)
|++..+|.+.+|++|+|.+. ++++++||||..+.+++.+++.|.++++|++||.|.||+||+..+.+.+ +++||++..
T Consensus 1 ~~i~~~~~~~dNy~~li~~~-~~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~ 79 (251)
T PRK10241 1 MNLNSIPAFDDNYIWVLNDE-AGRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQE 79 (251)
T ss_pred CeeEEeeeecceEEEEEEcC-CCcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEeccc
Confidence 46788899999999999875 4779999999989999999999989999999999999999999999998 479998765
Q ss_pred cccCCCCccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeCCCcEEEEcccccccccCCCCCCCHHHHHHHHHHhcCC
Q 026191 155 DKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQLIVYVTDVFFP 234 (242)
Q Consensus 155 ~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~sl~~l~~~ 234 (242)
... +.....+.+|+.+.+++.+++++++||||+||++|+.+ +++|+||++|.+++|++++++.++|.+|++++.++
T Consensus 80 ~~~--~~~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~~--~~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~~l 155 (251)
T PRK10241 80 TQD--KGTTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFSK--PYLFCGDTLFSGGCGRLFEGTASQMYQSLKKINAL 155 (251)
T ss_pred ccc--cCCceEeCCCCEEEeCCcEEEEEEcCCCCccceeeecC--CcEEEcCeeccCCcCCCCCCCHHHHHHHHHHHHcC
Confidence 432 23456788999999999999999999999999999864 68999999999999999999999999999999887
Q ss_pred CCCC
Q 026191 235 SEDN 238 (242)
Q Consensus 235 ~~~~ 238 (242)
.++.
T Consensus 156 ~~~t 159 (251)
T PRK10241 156 PDDT 159 (251)
T ss_pred CCCE
Confidence 6654
No 5
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.96 E-value=9.5e-29 Score=206.83 Aligned_cols=156 Identities=48% Similarity=0.814 Sum_probs=139.8
Q ss_pred eccccceeEEEEEE-CCCCeEEEEcCCCcHHHHHHHHc---CCCCccEEEcCCCCCCccCChHHHHHh--cCCEEEeccc
Q 026191 81 VPCLRDNYAYLLHD-MDTGTVGVVDPSEAVPVIDALSR---KNRNLTYILNTHHHHDHTGGNLELKAR--YGAKVIGSGV 154 (242)
Q Consensus 81 ~~~~~~~~~~lI~~-~d~g~~~liD~g~~~~~~~~l~~---~g~~i~~vilTH~H~DH~gg~~~l~~~--~~~~i~~~~~ 154 (242)
.+.+++||+||+.+ ++++.+.++||...+.+.+.+++ .+.+|.+|+.||.|+||+||+..+.+. +++++|.+.
T Consensus 7 ~~~~~~Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~- 85 (265)
T KOG0813|consen 7 LPTLQDNYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA- 85 (265)
T ss_pred ccccCCceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCC-
Confidence 56788999999998 77788999999988888888887 668999999999999999999999888 368888775
Q ss_pred cccCCCCccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeCC---CcEEEEcccccccccCCCCCCCHHHHHHHHHHh
Q 026191 155 DKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPG---SAAVFTGDTLFSLSCGKLFEGTPGQLIVYVTDV 231 (242)
Q Consensus 155 ~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~~---~~vlftGD~~~~~~~~~~~~~~~~~~~~sl~~l 231 (242)
.+..+...+.+++|+.+.++|.++++++|||||.||+||++.+ .+.+|+||++|..+||+++++..++|..|+..+
T Consensus 86 -~~r~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf~~GcG~~FEgt~~~M~~sl~~l 164 (265)
T KOG0813|consen 86 -DDRIPGITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLFGAGCGRFFEGTAEQMDSSLNEL 164 (265)
T ss_pred -hhcCccccccCCCCcEEEECCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCceeecCccchhcCCHHHHHHhHHHh
Confidence 4556667778999999999999999999999999999999985 899999999999999999999999999999997
Q ss_pred cCCCCCC
Q 026191 232 FFPSEDN 238 (242)
Q Consensus 232 ~~~~~~~ 238 (242)
+.+.+++
T Consensus 165 ~~L~~~t 171 (265)
T KOG0813|consen 165 IALPDDT 171 (265)
T ss_pred hcCCCCc
Confidence 7777664
No 6
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.96 E-value=1.9e-27 Score=201.33 Aligned_cols=149 Identities=32% Similarity=0.499 Sum_probs=125.4
Q ss_pred ceeEEEEEEC--CCCeEEEEcCC--CcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhc-CCEEEeccccccCCC
Q 026191 86 DNYAYLLHDM--DTGTVGVVDPS--EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGVDKDRIP 160 (242)
Q Consensus 86 ~~~~~lI~~~--d~g~~~liD~g--~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~-~~~i~~~~~~~~~~~ 160 (242)
.+|+|||.+. .++++++|||+ ....+++.+++.+.+|.+|++||.|+||++|+..+++.+ ++++++++... .
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a~v~~~~~~~---~ 98 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSIISKASG---S 98 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCCeEEeccccC---C
Confidence 4569999875 25789999998 346778899999999999999999999999999999877 78999876432 2
Q ss_pred CccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeCC------CcEEEEcccccccccCC--CCCCCHHHHHHHHHH-h
Q 026191 161 GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPG------SAAVFTGDTLFSLSCGK--LFEGTPGQLIVYVTD-V 231 (242)
Q Consensus 161 ~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~~------~~vlftGD~~~~~~~~~--~~~~~~~~~~~sl~~-l 231 (242)
..+..+.+|+.+.+|+.++++++|||||+||++|++++ .+++|+||++|.+++|+ ++.++.+++++|+++ +
T Consensus 99 ~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~~~g~~~~l~~Sl~~~l 178 (251)
T PLN02962 99 KADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSDQLYKSVHSQI 178 (251)
T ss_pred CCCEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCCCCCCHHHHHHHHHHHH
Confidence 24567899999999999999999999999999999853 36999999999999998 467999999999975 5
Q ss_pred cCCCCC
Q 026191 232 FFPSED 237 (242)
Q Consensus 232 ~~~~~~ 237 (242)
..+.++
T Consensus 179 ~~L~~~ 184 (251)
T PLN02962 179 FTLPKD 184 (251)
T ss_pred HcCCCC
Confidence 554443
No 7
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.86 E-value=2.1e-20 Score=156.49 Aligned_cols=151 Identities=36% Similarity=0.533 Sum_probs=116.9
Q ss_pred ceeEEEEEECCCCeEEEEcCCC----cHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcC-CEEEecccccc---
Q 026191 86 DNYAYLLHDMDTGTVGVVDPSE----AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYG-AKVIGSGVDKD--- 157 (242)
Q Consensus 86 ~~~~~lI~~~d~g~~~liD~g~----~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~-~~i~~~~~~~~--- 157 (242)
.++++++.+.+ ++.++||+|. ...+.+.+.+.+.+|++|++||.|+||+||+..+.+... ++++.++....
T Consensus 24 ~~~~~~~~~~~-~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~~~~~ 102 (252)
T COG0491 24 GNSVYLLVDGE-GGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVPLLLR 102 (252)
T ss_pred cccEEEEEcCC-CceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhhhhhh
Confidence 44466666532 4699999993 356778888888899999999999999999999988775 77744332111
Q ss_pred --------------CCC--CccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeCCCcEEEEcccccccc--cCCC--C
Q 026191 158 --------------RIP--GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLS--CGKL--F 217 (242)
Q Consensus 158 --------------~~~--~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~~~~vlftGD~~~~~~--~~~~--~ 217 (242)
..+ .....+.+++.+.+++..++++++||||+||+++++++.++||+||+++... .+.. +
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~~~~l~~gD~~~~~~~~~~~~~~~ 182 (252)
T COG0491 103 EEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLFAGDTGVGRLDLP 182 (252)
T ss_pred cccccccccccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECCccEEEecceeccCCCCCccccCC
Confidence 111 2244566899999999999999999999999999999877999999999885 3333 2
Q ss_pred CCCHHHHHHHHHHhcCCCCC
Q 026191 218 EGTPGQLIVYVTDVFFPSED 237 (242)
Q Consensus 218 ~~~~~~~~~sl~~l~~~~~~ 237 (242)
..+..++.+++++++....+
T Consensus 183 ~~~~~~~~~s~~~~~~~~~~ 202 (252)
T COG0491 183 GGDAAQLLASLRRLLLLLLP 202 (252)
T ss_pred CCCHHHHHHHHHHHHhccCC
Confidence 33489999999998887765
No 8
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=170.13 Aligned_cols=128 Identities=20% Similarity=0.315 Sum_probs=103.1
Q ss_pred eccccceeEEEEEECCCCeEEEEcCCC---cHHHHHHHHcC-C-CCccEEEcCCCCCCccCChHHHHHhc-CCEEEeccc
Q 026191 81 VPCLRDNYAYLLHDMDTGTVGVVDPSE---AVPVIDALSRK-N-RNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGV 154 (242)
Q Consensus 81 ~~~~~~~~~~lI~~~d~g~~~liD~g~---~~~~~~~l~~~-g-~~i~~vilTH~H~DH~gg~~~l~~~~-~~~i~~~~~ 154 (242)
.+.+...|+|||.+ ++.+|||+|. .+.+++.+++. + .+||+||+||.|+||+||+..+.+.+ +++||+++.
T Consensus 27 ~~~g~~~NsyLI~~---~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~~ 103 (394)
T PRK11921 27 THRGSSYNSYLIKD---EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTKN 103 (394)
T ss_pred cCCceEEEEEEEeC---CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECHH
Confidence 34444567999964 4589999984 35567777653 3 58999999999999999999998876 789999876
Q ss_pred cccCCC------CccEEecCCCEEEECCeEEEEEEcCC-CCCCCEEEEeCCCcEEEEccccccc
Q 026191 155 DKDRIP------GIDIVLNDGDKWMFAGHEVHVIDTPG-HTRGHISFYFPGSAAVFTGDTLFSL 211 (242)
Q Consensus 155 ~~~~~~------~~~~~~~~g~~~~~g~~~i~~~~~pg-Ht~gs~~~~~~~~~vlftGD~~~~~ 211 (242)
+.+.+. .....+++|+.+++|+.+++++++|| |+||++++++++.++||+||+|-..
T Consensus 104 ~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~~~~vLFsgD~fG~~ 167 (394)
T PRK11921 104 GAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLTGDNILFSNDAFGQH 167 (394)
T ss_pred HHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEcCCCEEEecCccccc
Confidence 543221 13456889999999999999999998 9999999999999999999986543
No 9
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.84 E-value=1.2e-19 Score=145.30 Aligned_cols=150 Identities=29% Similarity=0.421 Sum_probs=119.1
Q ss_pred eeEEEEEECCCCeEEEEcCCC--cHHHHHHHHcCC-CCccEEEcCCCCCCccCChHHHHHhcCCEEEeccccccCCC---
Q 026191 87 NYAYLLHDMDTGTVGVVDPSE--AVPVIDALSRKN-RNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIP--- 160 (242)
Q Consensus 87 ~~~~lI~~~d~g~~~liD~g~--~~~~~~~l~~~g-~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~--- 160 (242)
.|+++|+.+ +..+|||+|. ....++.+++.+ .+|++|++||.|.||++|+..+.+..++++|+++...+.+.
T Consensus 6 ~~~~li~~~--~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~~~~i~~~~~~~~~~~~~~ 83 (183)
T smart00849 6 VNSYLVEGD--GGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAPGAPVYAPEGTAELLKDLL 83 (183)
T ss_pred eeEEEEEeC--CceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhCCCCcEEEchhhhHHHhccc
Confidence 359999874 5589999993 224555576665 69999999999999999999998878889998877664332
Q ss_pred -------------CccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeCCCcEEEEccccccccc-CCC---CCCCHHH
Q 026191 161 -------------GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSC-GKL---FEGTPGQ 223 (242)
Q Consensus 161 -------------~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~~~~vlftGD~~~~~~~-~~~---~~~~~~~ 223 (242)
.....+..++.+.+++.+++++++|||+++++++++++.+++|+||+.+.... ... ...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~vl~~gD~~~~~~~~~~~~~~~~~~~~~ 163 (183)
T smart00849 84 KLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDGGDASASD 163 (183)
T ss_pred hhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECCCCEEEECCeeeccCCCCcccCCCCccHHH
Confidence 12356788999999999999999999999999999999999999999998763 222 3467788
Q ss_pred HHHHHHHhcCCCCCC
Q 026191 224 LIVYVTDVFFPSEDN 238 (242)
Q Consensus 224 ~~~sl~~l~~~~~~~ 238 (242)
|.++++++.....+.
T Consensus 164 ~~~~~~~~~~~~~~~ 178 (183)
T smart00849 164 SLESLLKLLALDPEL 178 (183)
T ss_pred HHHHHHHhhcCCccE
Confidence 889998877655443
No 10
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.82 E-value=9.8e-20 Score=167.48 Aligned_cols=125 Identities=22% Similarity=0.342 Sum_probs=100.2
Q ss_pred ccceeEEEEEECCCCeEEEEcCCC---cHHHHHHHHc-CC-CCccEEEcCCCCCCccCChHHHHHhc-CCEEEecccccc
Q 026191 84 LRDNYAYLLHDMDTGTVGVVDPSE---AVPVIDALSR-KN-RNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGVDKD 157 (242)
Q Consensus 84 ~~~~~~~lI~~~d~g~~~liD~g~---~~~~~~~l~~-~g-~~i~~vilTH~H~DH~gg~~~l~~~~-~~~i~~~~~~~~ 157 (242)
+...|+|||.+ ++.+|||++. ...++..+++ .+ .+|++||+||.|+||+||+..+.+.+ +++||+++.+..
T Consensus 32 G~t~NsYLI~~---~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~ 108 (479)
T PRK05452 32 GSSYNSYLIRE---EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANAID 108 (479)
T ss_pred CcEEEEEEEEC---CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECHHHHH
Confidence 33456999974 4589999984 3456666664 23 58999999999999999999998876 789999877653
Q ss_pred CCC-------CccEEecCCCEEEEC-CeEEEEEEcCC-CCCCCEEEEeCCCcEEEEccccccc
Q 026191 158 RIP-------GIDIVLNDGDKWMFA-GHEVHVIDTPG-HTRGHISFYFPGSAAVFTGDTLFSL 211 (242)
Q Consensus 158 ~~~-------~~~~~~~~g~~~~~g-~~~i~~~~~pg-Ht~gs~~~~~~~~~vlftGD~~~~~ 211 (242)
.+. .....+++|+.+++| +.+++++++|+ |+||++++++++.++|||||++-..
T Consensus 109 ~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~~~vLFsgD~fG~~ 171 (479)
T PRK05452 109 SINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQH 171 (479)
T ss_pred HHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEcCCCEEEecccccCC
Confidence 321 123678899999999 47999999997 9999999999999999999986543
No 11
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=99.81 E-value=1.7e-19 Score=140.80 Aligned_cols=149 Identities=34% Similarity=0.544 Sum_probs=123.3
Q ss_pred ceeEEEEEECCCCeEEEEcCC--CcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhc-CCE-EEeccccccCCCC
Q 026191 86 DNYAYLLHDMDTGTVGVVDPS--EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY-GAK-VIGSGVDKDRIPG 161 (242)
Q Consensus 86 ~~~~~lI~~~d~g~~~liD~g--~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~-~~~-i~~~~~~~~~~~~ 161 (242)
..++||+.+-.++++++|||- ...+-++.++..|.++-|-+.||.|.||+-|..+++..+ +++ |+..... ..
T Consensus 20 sTytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~kSVis~~SG----ak 95 (237)
T KOG0814|consen 20 STYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCKSVISSASG----AK 95 (237)
T ss_pred ceEEEEeeeCCCCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHhcccHHHHhhhccc----cc
Confidence 457999998888999999987 233344667888889999999999999999999998876 443 3322211 22
Q ss_pred ccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeCCCcEEEEcccccccccCC--CCCCCHHHHHHHHHHhcCCCCCC
Q 026191 162 IDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGK--LFEGTPGQLIVYVTDVFFPSEDN 238 (242)
Q Consensus 162 ~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~~~~vlftGD~~~~~~~~~--~~~~~~~~~~~sl~~l~~~~~~~ 238 (242)
.+..+++|+.+++|+..+++..+||||+|.+.|...+.+..||||.+...+||+ +-++.++.+++|+..-+-.+|++
T Consensus 96 AD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d~~~aFTGDalLIRgCGRTDFQqG~~~~LyesVH~kIFTLP~d 174 (237)
T KOG0814|consen 96 ADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEHDLRMAFTGDALLIRGCGRTDFQQGCPASLYESVHSKIFTLPED 174 (237)
T ss_pred cccccCCCCEEEEccEEEEEecCCCCCCceEEEEecCcceeeecceeEEeccCccchhccChHHHHHHHhHHheeCCCc
Confidence 467889999999999999999999999999999999999999999999999999 45789999999999666666655
No 12
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.79 E-value=1.2e-18 Score=139.40 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=111.5
Q ss_pred ceeEEEEEECCCCeEEEEcCCCcHHHHHH-----HHcCCCCccEEEcCCCCCCccCChHHHHHhcCCEEEeccccccCC-
Q 026191 86 DNYAYLLHDMDTGTVGVVDPSEAVPVIDA-----LSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRI- 159 (242)
Q Consensus 86 ~~~~~lI~~~d~g~~~liD~g~~~~~~~~-----l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~- 159 (242)
..|+|+|+++ ++.+|||+|........ ....+.+|++||+||.|+||+||+..+.+......+.........
T Consensus 5 ~~n~~li~~~--~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~~~ 82 (194)
T PF00753_consen 5 GSNSYLIEGG--DGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAKAI 82 (194)
T ss_dssp EEEEEEEEET--TEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHHHH
T ss_pred eEEEEEEEEC--CEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeeccccccccc
Confidence 3459999973 67999999954433222 333557999999999999999999999998766554433222111
Q ss_pred ---------------CCcc-EEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeCCCcEEEEcccccccccCCCC------
Q 026191 160 ---------------PGID-IVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLF------ 217 (242)
Q Consensus 160 ---------------~~~~-~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~~~~vlftGD~~~~~~~~~~~------ 217 (242)
.... ...........++..+.+...++|++++++++.++.++||+||+++........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~ 162 (194)
T PF00753_consen 83 RPPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGKVLFTGDLLFSNEHPNPDPDLPLR 162 (194)
T ss_dssp HHHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTTEEEEETTSCTTTSSSSSTSHTTT
T ss_pred cccccccccccccccccccceeeecccccccccccccceeccccCCcceEEEeCCCcEEEeeeEeccCCccccccccccc
Confidence 0111 223344445557778888899999999999999999999999999977554432
Q ss_pred ------CCCHHHHHHHHHHhcCCCCCCcc
Q 026191 218 ------EGTPGQLIVYVTDVFFPSEDNVS 240 (242)
Q Consensus 218 ------~~~~~~~~~sl~~l~~~~~~~~~ 240 (242)
..+..++.++++++.++-++.++
T Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ii 191 (194)
T PF00753_consen 163 GADVRYGSNWEESIEALRRLEALDPEVII 191 (194)
T ss_dssp THTTSHTTHHHHHHHHHHHHHTSTTSEEE
T ss_pred cccccCcHHHHHHHHHHHHHHCCCCCEEE
Confidence 36778999999999988777653
No 13
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.75 E-value=1.5e-17 Score=146.47 Aligned_cols=143 Identities=22% Similarity=0.330 Sum_probs=113.9
Q ss_pred ccceeEEEEEECCCCeEEEEcCCC---cHHHHHHHHcC--CCCccEEEcCCCCCCccCChHHHHHhc-CCEEEecccccc
Q 026191 84 LRDNYAYLLHDMDTGTVGVVDPSE---AVPVIDALSRK--NRNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGVDKD 157 (242)
Q Consensus 84 ~~~~~~~lI~~~d~g~~~liD~g~---~~~~~~~l~~~--g~~i~~vilTH~H~DH~gg~~~l~~~~-~~~i~~~~~~~~ 157 (242)
+..-|+|||.+ ++.+||||+. .+.++..|++. .++|||||.+|..+||+|+++.+.+.. +++|++++....
T Consensus 33 GttyNSYLI~~---~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~ 109 (388)
T COG0426 33 GTTYNSYLIVG---DKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKLAAR 109 (388)
T ss_pred CceeeeEEEeC---CcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHH
Confidence 44456999983 5699999984 44455666653 267999999999999999999998776 899999988766
Q ss_pred CCCC------ccEEecCCCEEEECCeEEEEEEcCC-CCCCCEEEEeCCCcEEEEcccccccccC-CCCCCCHHHHHHHHH
Q 026191 158 RIPG------IDIVLNDGDKWMFAGHEVHVIDTPG-HTRGHISFYFPGSAAVFTGDTLFSLSCG-KLFEGTPGQLIVYVT 229 (242)
Q Consensus 158 ~~~~------~~~~~~~g~~~~~g~~~i~~~~~pg-Ht~gs~~~~~~~~~vlftGD~~~~~~~~-~~~~~~~~~~~~sl~ 229 (242)
.++. ....++.|+.+++||.+++|+.+|= |+||+++.|.++.++|||+|++=.-.|. ..++.+.+++....+
T Consensus 110 ~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd~~~kILFS~D~fG~h~~~~~~fded~~~~~~~~~ 189 (388)
T COG0426 110 FLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYDPEDKILFSCDAFGAHVCDDYRFDEDIEELLPDMR 189 (388)
T ss_pred HHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEeecCCcEEEccccccccccchhccccCHHHHHHHHH
Confidence 5531 2467899999999999999999884 9999999999999999999998665555 457777765555444
No 14
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.72 E-value=7.7e-17 Score=146.65 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=102.7
Q ss_pred eeEEEEEECCCCeEEEEcCCCc---HHH---------HHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcC-CEEEecc
Q 026191 87 NYAYLLHDMDTGTVGVVDPSEA---VPV---------IDALSRKNRNLTYILNTHHHHDHTGGNLELKARYG-AKVIGSG 153 (242)
Q Consensus 87 ~~~~lI~~~d~g~~~liD~g~~---~~~---------~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~-~~i~~~~ 153 (242)
.|+|+|+. ++..+|||+|.. ..+ .+++++...++++|++||.|.||+||++.+.+.++ ++||+++
T Consensus 14 ~n~~ll~~--~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~~~ 91 (422)
T TIGR00649 14 KNMYVVEI--DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYGTP 91 (422)
T ss_pred CeEEEEEE--CCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEEeCH
Confidence 45999986 366999999931 111 35676666789999999999999999999988776 6899987
Q ss_pred ccccCC-----------CCccEEecCCCEEEEC-CeEEEEEEcCCCCCCCEEEEe--CCCcEEEEcccccccccCCCCCC
Q 026191 154 VDKDRI-----------PGIDIVLNDGDKWMFA-GHEVHVIDTPGHTRGHISFYF--PGSAAVFTGDTLFSLSCGKLFEG 219 (242)
Q Consensus 154 ~~~~~~-----------~~~~~~~~~g~~~~~g-~~~i~~~~~pgHt~gs~~~~~--~~~~vlftGD~~~~~~~~~~~~~ 219 (242)
.+...+ ......++.++.+++| +.+++++.+++|.||+.+|++ ++.+++||||+.+.......+..
T Consensus 92 ~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~~~~~~~~~~~ 171 (422)
T TIGR00649 92 LTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKFDNTPVIGEPP 171 (422)
T ss_pred HHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCCCCCccCCccc
Confidence 764322 1224568889999996 599999999888899999988 46789999999886544332233
Q ss_pred CHHHH
Q 026191 220 TPGQL 224 (242)
Q Consensus 220 ~~~~~ 224 (242)
+...+
T Consensus 172 d~~~l 176 (422)
T TIGR00649 172 DLNRI 176 (422)
T ss_pred CHHHH
Confidence 44333
No 15
>PRK11539 ComEC family competence protein; Provisional
Probab=99.69 E-value=5.8e-16 Score=149.86 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=103.8
Q ss_pred ccceEEEeccccceeEEEEEECCCCeEEEEcCCC--------cHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhc
Q 026191 74 SSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSE--------AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY 145 (242)
Q Consensus 74 ~~~~i~~~~~~~~~~~~lI~~~d~g~~~liD~g~--------~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~ 145 (242)
..+++++++++++. +.+|++ .+++++||+|. .+.+.++|+++|.++|++|+||.|.||+||+..+.+.+
T Consensus 499 ~~~~v~~lDVGqG~-a~li~~--~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~ 575 (755)
T PRK11539 499 YEWRVDMLDVGHGL-AVVIER--NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAW 575 (755)
T ss_pred CcEEEEEEEccCce-EEEEEE--CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhC
Confidence 55789999999998 889986 47899999984 35688999999988999999999999999999999988
Q ss_pred CC-EEEeccccccCCCCccEEecCCCEEEECCeEEEEEEcCCC-----CCCCEEEEeC--CCcEEEEcccc
Q 026191 146 GA-KVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGH-----TRGHISFYFP--GSAAVFTGDTL 208 (242)
Q Consensus 146 ~~-~i~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~pgH-----t~gs~~~~~~--~~~vlftGD~~ 208 (242)
+. +++.+..... ...+..|+.+.+++.+++++++|+| |++|+++.++ +.++|||||+=
T Consensus 576 ~~~~i~~~~~~~~-----~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi~ 641 (755)
T PRK11539 576 PMAWIRSPLNWAN-----HLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDLE 641 (755)
T ss_pred CcceeeccCcccC-----cccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCCC
Confidence 54 7776542221 1235789999999999999997754 4678888885 67899999973
No 16
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.67 E-value=1.1e-15 Score=146.12 Aligned_cols=131 Identities=19% Similarity=0.249 Sum_probs=105.2
Q ss_pred cceEEEeccccceeEEEEEECCCCeEEEEcCCCc--------HHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcC
Q 026191 75 SLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEA--------VPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYG 146 (242)
Q Consensus 75 ~~~i~~~~~~~~~~~~lI~~~d~g~~~liD~g~~--------~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~ 146 (242)
..+++++++++++ +.+|+++ ++.++||+|+. ..+.++|++.|.+||++++||.|.||+||+..+.+.++
T Consensus 439 ~~~v~~lDVGqGd-aili~~~--~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~ 515 (662)
T TIGR00361 439 SWQVDMLDVGQGL-AMFIGAN--GKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHP 515 (662)
T ss_pred CEEEEEEecCCce-EEEEEEC--CeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCC
Confidence 5788999999998 9999874 57999999842 55899999999669999999999999999999999987
Q ss_pred C-EEEeccccccCCCCccEEecCCCEEEECCeEEEEEEcC-----CCCCCCEEEEeC--CCcEEEEccccc
Q 026191 147 A-KVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTP-----GHTRGHISFYFP--GSAAVFTGDTLF 209 (242)
Q Consensus 147 ~-~i~~~~~~~~~~~~~~~~~~~g~~~~~g~~~i~~~~~p-----gHt~gs~~~~~~--~~~vlftGD~~~ 209 (242)
+ +++.+..... .......+..|+.+++++.++++++++ ..+++|+++.++ +.++|||||+=.
T Consensus 516 v~~i~~~~~~~~-~~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~ 585 (662)
T TIGR00361 516 VKRLVIPKGFVE-EGVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEA 585 (662)
T ss_pred ccEEEeccchhh-CCCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCH
Confidence 6 6776644221 122345688999999999999999853 235667887775 678999999965
No 17
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=130.34 Aligned_cols=133 Identities=19% Similarity=0.209 Sum_probs=108.9
Q ss_pred ceEEEeccccceeEEEEEECCCCeEEEEcCCC---cHHHHHHHHcCC-CCccEEEcCCCCCCccCChHHHHHhcCC-EEE
Q 026191 76 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSE---AVPVIDALSRKN-RNLTYILNTHHHHDHTGGNLELKARYGA-KVI 150 (242)
Q Consensus 76 ~~i~~~~~~~~~~~~lI~~~d~g~~~liD~g~---~~~~~~~l~~~g-~~i~~vilTH~H~DH~gg~~~l~~~~~~-~i~ 150 (242)
+++..++++++. +.+++.+ +..+++|+|. ...++++|+++| .+||.+|+||.|.||+||+..+.+.+.+ ++|
T Consensus 44 ~~~~~lDvGqg~-a~li~~~--~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~ 120 (293)
T COG2333 44 WKVHMLDVGQGL-ATLIRSE--GKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELW 120 (293)
T ss_pred ceEEEEEcCCCe-EEEEeeC--CceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEE
Confidence 688999999987 8888874 4489999984 556899999999 5799999999999999999999998876 677
Q ss_pred eccccccCC-------CCccEEecCCCEEEECCeEEEEEEcCC-----CCCCCEEEEeC--CCcEEEEccccccc
Q 026191 151 GSGVDKDRI-------PGIDIVLNDGDKWMFAGHEVHVIDTPG-----HTRGHISFYFP--GSAAVFTGDTLFSL 211 (242)
Q Consensus 151 ~~~~~~~~~-------~~~~~~~~~g~~~~~g~~~i~~~~~pg-----Ht~gs~~~~~~--~~~vlftGD~~~~~ 211 (242)
+........ ......++.|+.+.+++..++++.+++ -+..|+++++. +.++|||||+=-.+
T Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e~~~ 195 (293)
T COG2333 121 IYAGSDSTSTFVLRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLEEKG 195 (293)
T ss_pred EeCCCCccchhhhhhcCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCCCchh
Confidence 665555432 345677889999999999999999764 45678898885 67899999986543
No 18
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.66 E-value=3.4e-15 Score=117.64 Aligned_cols=139 Identities=23% Similarity=0.330 Sum_probs=98.4
Q ss_pred eEEEEEECCCCeEEEEcCC-CcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcCCEEEeccccccCCCC-ccEE
Q 026191 88 YAYLLHDMDTGTVGVVDPS-EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIPG-IDIV 165 (242)
Q Consensus 88 ~~~lI~~~d~g~~~liD~g-~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~-~~~~ 165 (242)
|+|+...++ +.++|||. -.....+.|.+.| .+++|++|| .||+.....++++++++||++..+.+.++- .+.+
T Consensus 24 ng~~~~~p~--GnilIDP~~ls~~~~~~l~a~g-gv~~IvLTn--~dHvR~A~~ya~~~~a~i~~p~~d~~~~p~~~D~~ 98 (199)
T PF14597_consen 24 NGHAWRRPE--GNILIDPPPLSAHDWKHLDALG-GVAWIVLTN--RDHVRAAEDYAEQTGAKIYGPAADAAQFPLACDRW 98 (199)
T ss_dssp EEEEE--TT----EEES-----HHHHHHHHHTT---SEEE-SS--GGG-TTHHHHHHHS--EEEEEGGGCCC-SS--SEE
T ss_pred eeEEEEcCC--CCEEecCccccHHHHHHHHhcC-CceEEEEeC--ChhHhHHHHHHHHhCCeeeccHHHHhhCCCCCccc
Confidence 478877654 37999988 4555778888876 588999998 799999999999999999999999987764 5779
Q ss_pred ecCCCEEEECCeEEEEEEcCC-CCCCCEEEEeCCCcEEEEcccccccccCC---CCC---CCHHHHHHHHHHhcCCC
Q 026191 166 LNDGDKWMFAGHEVHVIDTPG-HTRGHISFYFPGSAAVFTGDTLFSLSCGK---LFE---GTPGQLIVYVTDVFFPS 235 (242)
Q Consensus 166 ~~~g~~~~~g~~~i~~~~~pg-Ht~gs~~~~~~~~~vlftGD~~~~~~~~~---~~~---~~~~~~~~sl~~l~~~~ 235 (242)
+.+|+.+ ++| ++++..|| ||||.+++++++ ++||+||++-....|. +++ .|+.++++|++||.++.
T Consensus 99 l~dge~i-~~g--~~vi~l~G~ktpGE~ALlled-~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~~sl~RLa~~~ 171 (199)
T PF14597_consen 99 LADGEEI-VPG--LWVIHLPGSKTPGELALLLED-RVLITGDLLRSHPAGSLSLLPDEKLYDPTEARASLRRLAAYP 171 (199)
T ss_dssp E-TT-BS-STT--EEEEEE-SSSSTTEEEEEETT-TEEEESSSEEBSSTTS-EE--GGG-S-HHHHHHHHHHHHT-T
T ss_pred cccCCCc-cCc--eEEEEcCCCCCCceeEEEecc-ceEEecceeeecCCCCeEECChHHcCCHHHHHHHHHHHhccc
Confidence 9999843 577 88899899 999999999986 6999999887655444 454 69999999999999874
No 19
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.47 E-value=1.6e-13 Score=129.86 Aligned_cols=134 Identities=22% Similarity=0.230 Sum_probs=94.7
Q ss_pred ccceEEEecccc--ceeEEEEEECCCCeEEEEcCCCcH-----HHHHHHHcC---CCCccEEEcCCCCCCccCChHHHHH
Q 026191 74 SSLQIELVPCLR--DNYAYLLHDMDTGTVGVVDPSEAV-----PVIDALSRK---NRNLTYILNTHHHHDHTGGNLELKA 143 (242)
Q Consensus 74 ~~~~i~~~~~~~--~~~~~lI~~~d~g~~~liD~g~~~-----~~~~~l~~~---g~~i~~vilTH~H~DH~gg~~~l~~ 143 (242)
..|++.++++.+ +.+||+|..+ +..+|+|||... ...+.+... ..+||+||+||.|.||+|+++.+.+
T Consensus 173 ~~m~i~~LGg~~eVG~Sc~Ll~~~--~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k 250 (630)
T TIGR03675 173 RWVRVTALGGFREVGRSALLLSTP--ESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFK 250 (630)
T ss_pred CeEEEEEEecCCccCCCEEEEEEC--CCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHH
Confidence 347777777622 2349999874 458999999322 122333322 2579999999999999999999876
Q ss_pred h-cCCEEEeccccccCC-----------------C-----------CccEEecCCCEEEE-CCeEEEEEEcCCCCCCCEE
Q 026191 144 R-YGAKVIGSGVDKDRI-----------------P-----------GIDIVLNDGDKWMF-AGHEVHVIDTPGHTRGHIS 193 (242)
Q Consensus 144 ~-~~~~i~~~~~~~~~~-----------------~-----------~~~~~~~~g~~~~~-g~~~i~~~~~pgHt~gs~~ 193 (242)
. ++.+||++..+.+.. + .....+..++.+++ ++.+++++++ ||++|+.+
T Consensus 251 ~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~A-GHilGsa~ 329 (630)
T TIGR03675 251 YGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNA-GHILGSAI 329 (630)
T ss_pred hCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecC-ccccCceE
Confidence 4 577999987643211 0 11346778888888 5788888875 99999987
Q ss_pred EEeC--C--CcEEEEcccccc
Q 026191 194 FYFP--G--SAAVFTGDTLFS 210 (242)
Q Consensus 194 ~~~~--~--~~vlftGD~~~~ 210 (242)
+.+. + .+++||||+-+.
T Consensus 330 ~~~~i~dg~~~IvYTGD~~~~ 350 (630)
T TIGR03675 330 AHLHIGDGLYNIVYTGDFKYE 350 (630)
T ss_pred EEEEECCCCEEEEEeCCCCCC
Confidence 7652 2 489999998764
No 20
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.44 E-value=1.1e-12 Score=121.63 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=113.4
Q ss_pred cceEEEecccc--ceeEEEEEECCCCeEEEEcCC---C------cHHH---HHHHHcCCCCccEEEcCCCCCCccCChHH
Q 026191 75 SLQIELVPCLR--DNYAYLLHDMDTGTVGVVDPS---E------AVPV---IDALSRKNRNLTYILNTHHHHDHTGGNLE 140 (242)
Q Consensus 75 ~~~i~~~~~~~--~~~~~lI~~~d~g~~~liD~g---~------~~~~---~~~l~~~g~~i~~vilTH~H~DH~gg~~~ 140 (242)
.+++..+.+.+ +.|+|+++-. ++.+++|+| + .+.+ ..+|.+...+++++|+||+|.||+|++++
T Consensus 8 ~i~i~~lGG~~EiGkN~~vve~~--~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ 85 (555)
T COG0595 8 KIKIFALGGVGEIGKNMYVVEYG--DDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPY 85 (555)
T ss_pred ceEEEEecChhhhccceEEEEEC--CcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHH
Confidence 34555555421 2459999874 469999998 1 1112 24567776799999999999999999999
Q ss_pred HHHhcC-CEEEeccccccCC----------C--CccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeC--CCcEEEEc
Q 026191 141 LKARYG-AKVIGSGVDKDRI----------P--GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--GSAAVFTG 205 (242)
Q Consensus 141 l~~~~~-~~i~~~~~~~~~~----------~--~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~--~~~vlftG 205 (242)
+..+.+ ++||+++.+...+ . .....++.++.+++++..++++.+..--|+++.+.+. ...+++||
T Consensus 86 ll~~~~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TG 165 (555)
T COG0595 86 LLKQVLFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTG 165 (555)
T ss_pred HHhcCCcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCccEEEeC
Confidence 988776 8999987665432 1 2456788999999999999999986555899988884 66799999
Q ss_pred ccccccccCCCCCCCHHHHHHHHHH-hcCCCCC
Q 026191 206 DTLFSLSCGKLFEGTPGQLIVYVTD-VFFPSED 237 (242)
Q Consensus 206 D~~~~~~~~~~~~~~~~~~~~sl~~-l~~~~~~ 237 (242)
|.-|...+..=+..|...+.+--++ ++.++.|
T Consensus 166 DFk~d~~~~~g~~~d~~r~~~~g~eGVl~Lisd 198 (555)
T COG0595 166 DFKFDPTPVDGEPTDLARLAEIGKEGVLALISD 198 (555)
T ss_pred CEEecCCcCCCCcCCHHHHHHhccCCcEEEEeC
Confidence 9998664433223444444444443 3333333
No 21
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.40 E-value=9.4e-13 Score=109.94 Aligned_cols=119 Identities=28% Similarity=0.405 Sum_probs=83.3
Q ss_pred eEEEEEECCCCeEEEEcCCCc-HHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcCCEEEeccccccCCCC----c
Q 026191 88 YAYLLHDMDTGTVGVVDPSEA-VPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIPG----I 162 (242)
Q Consensus 88 ~~~lI~~~d~g~~~liD~g~~-~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~----~ 162 (242)
.+|+|+. ++..+||||... .... .++....++|+|++||.|.||++++..+..+.++++|++....+.+.. .
T Consensus 9 s~~li~~--~~~~iLiDP~~~~~~~~-~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 85 (228)
T PRK00685 9 SAFLIET--GGKKILIDPFITGNPLA-DLKPEDVKVDYILLTHGHGDHLGDTVEIAKRTGATVIANAELANYLSEKGVEK 85 (228)
T ss_pred eEEEEEE--CCEEEEECCCCCCCCCC-CCChhcCcccEEEeCCCCccccccHHHHHHhCCCEEEEeHHHHHHHHhcCCCc
Confidence 4999986 467999998411 0000 111122489999999999999999888776668899988765543321 2
Q ss_pred cEEecCCCEEEECCeEEEEEEcCCCCCC------------CEEEEe--CCCcEEEEcccccc
Q 026191 163 DIVLNDGDKWMFAGHEVHVIDTPGHTRG------------HISFYF--PGSAAVFTGDTLFS 210 (242)
Q Consensus 163 ~~~~~~g~~~~~g~~~i~~~~~pgHt~g------------s~~~~~--~~~~vlftGD~~~~ 210 (242)
...++.|+.+++++.+++++++ -|.+. ..+|.+ ++.+++|+||+-+.
T Consensus 86 ~~~~~~~~~~~~~~~~i~~~p~-~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~ 146 (228)
T PRK00685 86 THPMNIGGTVEFDGGKVKLTPA-LHSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLF 146 (228)
T ss_pred eeeccCCCcEEECCEEEEEEEE-EcCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccch
Confidence 3567788999999998888764 24332 356666 47799999998764
No 22
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.37 E-value=7e-12 Score=105.60 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=82.1
Q ss_pred EEEEEECCCCeEEEEcCCCcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhc--CCEEEecccccc---CC--C-
Q 026191 89 AYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY--GAKVIGSGVDKD---RI--P- 160 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~--~~~i~~~~~~~~---~~--~- 160 (242)
+++|... +..+|||+|... +...+ ...+||+|++||.|.||++|+..+.... +++||+++.... .+ +
T Consensus 29 s~~i~~~--~~~iliD~G~~~-~~~~~--~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 103 (238)
T TIGR03307 29 SAVIEFN--GARTLIDAGLTD-LAERF--PPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHPG 103 (238)
T ss_pred EEEEEEC--CcEEEEECCChh-Hhhcc--CccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHHHhcCcc
Confidence 6777753 568999999432 21111 2258999999999999999997765432 578998765421 11 1
Q ss_pred --CccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeC--CCcEEEEccccc
Q 026191 161 --GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--GSAAVFTGDTLF 209 (242)
Q Consensus 161 --~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~--~~~vlftGD~~~ 209 (242)
.....+..++.+.+++.+|+.+.+ .|..+++.|.++ +++++|+||+-.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~H~~~~~g~~i~~~~~~i~y~gDt~~ 155 (238)
T TIGR03307 104 ILDFSKPLEAFEPFDLGGLRVTPLPL-VHSKLTFGYLLETDGQRVAYLTDTAG 155 (238)
T ss_pred cccccccccCCceEEECCEEEEEEec-CCCCcceEEEEecCCcEEEEEecCCC
Confidence 111236778899999999998887 688888988885 668999999854
No 23
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.36 E-value=9e-12 Score=105.74 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=82.8
Q ss_pred EEEEEECCCCeEEEEcCCCcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHh--cCCEEEecccccc--CC---C-
Q 026191 89 AYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKAR--YGAKVIGSGVDKD--RI---P- 160 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~--~~~~i~~~~~~~~--~~---~- 160 (242)
+++|+.. +..+|||+|... +...+ ...+||+|++||.|.||++|+..+... .+++||++..... .+ +
T Consensus 39 s~li~~~--~~~iLiD~G~~~-~~~~~--~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~ 113 (250)
T PRK11244 39 SALIEFN--GARTLIDAGLPD-LAERF--PPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDDLFKHPG 113 (250)
T ss_pred EEEEEEC--CCEEEEECCChH-HhhcC--CcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHHHhcCcc
Confidence 7888763 458999999432 21111 226899999999999999999877533 3568898765321 11 1
Q ss_pred --CccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeC--CCcEEEEccccc
Q 026191 161 --GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--GSAAVFTGDTLF 209 (242)
Q Consensus 161 --~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~--~~~vlftGD~~~ 209 (242)
.....++.++.+.+++.+++.+.+ .|+.++++|+++ +.+++|+||+-.
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~I~~~~~-~H~~~s~g~~i~~~~~~i~ysgDt~~ 165 (250)
T PRK11244 114 ILDFSHPLEPFEPFDLGGLQVTPLPL-NHSKLTFGYLLETAHSRVAYLTDTVG 165 (250)
T ss_pred ccccccccCCCCCeeECCEEEEEEee-CCCcceeEEEEecCCeEEEEEcCCCC
Confidence 111346788999999999998887 688889999885 568999999864
No 24
>PRK04286 hypothetical protein; Provisional
Probab=99.35 E-value=8.8e-12 Score=108.53 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=75.8
Q ss_pred eeEEEEEECCCCeEEEEcCCCc---------------HHHHHHHHcCC---CCccEEEcCCCCCCccCChHHH-----HH
Q 026191 87 NYAYLLHDMDTGTVGVVDPSEA---------------VPVIDALSRKN---RNLTYILNTHHHHDHTGGNLEL-----KA 143 (242)
Q Consensus 87 ~~~~lI~~~d~g~~~liD~g~~---------------~~~~~~l~~~g---~~i~~vilTH~H~DH~gg~~~l-----~~ 143 (242)
+||++|.+. +..+|||+|.. ..+.+.+.+.+ .+||+||+||.|+||++|+..+ .+
T Consensus 15 ~~~~~I~~~--~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~ 92 (298)
T PRK04286 15 SMATFVETK--DVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSDE 92 (298)
T ss_pred eeEEEEEEC--CeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccccc
Confidence 469999873 66999999922 33334343332 5899999999999999988664 11
Q ss_pred hcCCEEEeccccccC----------------C------CCccEEecCCCEEEECCeEEEEEEcCCCCCC--CEEE----E
Q 026191 144 RYGAKVIGSGVDKDR----------------I------PGIDIVLNDGDKWMFAGHEVHVIDTPGHTRG--HISF----Y 195 (242)
Q Consensus 144 ~~~~~i~~~~~~~~~----------------~------~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~g--s~~~----~ 195 (242)
.+++++|........ + ......+..++.+.+|+.++++.....|... .+.+ .
T Consensus 93 ~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~~r 172 (298)
T PRK04286 93 EIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIMVR 172 (298)
T ss_pred cchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEEEEE
Confidence 122333332222110 0 0023456788899999988887754356432 3332 3
Q ss_pred e--CCCcEEEEcccc
Q 026191 196 F--PGSAAVFTGDTL 208 (242)
Q Consensus 196 ~--~~~~vlftGD~~ 208 (242)
+ .+.+++|+||+-
T Consensus 173 i~~gg~~~~~~gDt~ 187 (298)
T PRK04286 173 ISDGDESFVFASDVQ 187 (298)
T ss_pred EEeCCEEEEEECCCC
Confidence 3 367899999997
No 25
>PRK02113 putative hydrolase; Provisional
Probab=99.33 E-value=1.3e-11 Score=104.79 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=82.1
Q ss_pred eEEEEEECCCCeEEEEcCCCcHHHHHHHHcCC-CCccEEEcCCCCCCccCChHHHHHh---cCCEEEeccccccCCC---
Q 026191 88 YAYLLHDMDTGTVGVVDPSEAVPVIDALSRKN-RNLTYILNTHHHHDHTGGNLELKAR---YGAKVIGSGVDKDRIP--- 160 (242)
Q Consensus 88 ~~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g-~~i~~vilTH~H~DH~gg~~~l~~~---~~~~i~~~~~~~~~~~--- 160 (242)
.+|+|+.. +..+|||+|..- ...+.+.+ .++|+|++||.|.||++|+..+... .+++||+++...+.+.
T Consensus 36 ~s~li~~~--~~~iLiD~G~g~--~~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~ 111 (252)
T PRK02113 36 TSALVETE--GARILIDCGPDF--REQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRM 111 (252)
T ss_pred eEEEEEEC--CeEEEEECCchH--HHHHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhC
Confidence 47888763 568999999542 22333334 6899999999999999999877432 2678998865443221
Q ss_pred --------------CccEEecCCCEEEECCeEEEEEEcCCCCC-CCEEEEeCCCcEEEEccccc
Q 026191 161 --------------GIDIVLNDGDKWMFAGHEVHVIDTPGHTR-GHISFYFPGSAAVFTGDTLF 209 (242)
Q Consensus 161 --------------~~~~~~~~g~~~~~g~~~i~~~~~pgHt~-gs~~~~~~~~~vlftGD~~~ 209 (242)
.....++.|+.+++++.+++.+... |.+ .+..|.+ .+++|+||+-+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i--~~i~y~~Dt~~ 172 (252)
T PRK02113 112 PYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRI--GKMAYITDMLT 172 (252)
T ss_pred CeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEe--CCEEEccCCCC
Confidence 0124567788999999999998874 653 4677777 47999999864
No 26
>PRK02126 ribonuclease Z; Provisional
Probab=99.30 E-value=2.6e-11 Score=106.97 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=52.5
Q ss_pred ccceeEEEEEECCCCeEEEEcCCCcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhc-----CCEEEeccccc
Q 026191 84 LRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY-----GAKVIGSGVDK 156 (242)
Q Consensus 84 ~~~~~~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~-----~~~i~~~~~~~ 156 (242)
+++ |+|+|....++..+|||+|. +...++....+|++|++||.|.||++|+..+.+.+ +++||+++...
T Consensus 14 ~~d-n~~~l~~~~~~~~iLiD~G~---~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~ 87 (334)
T PRK02126 14 FDD-PGLYVDFLFERRALLFDLGD---LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFA 87 (334)
T ss_pred CCC-cEEEEEECCCCeEEEEcCCC---HHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHH
Confidence 444 48888875568899999998 32323333378999999999999999999997664 46899876554
No 27
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.28 E-value=2.1e-11 Score=106.34 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=82.7
Q ss_pred eEEEEEECCCCeEEEEcCCCcHHHHHHHHcC-------C---CCccEEEcCCCCCCccCChHHHHHhcCCEEEecccccc
Q 026191 88 YAYLLHDMDTGTVGVVDPSEAVPVIDALSRK-------N---RNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKD 157 (242)
Q Consensus 88 ~~~lI~~~d~g~~~liD~g~~~~~~~~l~~~-------g---~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~ 157 (242)
.+++|++. ++..+|||+|.. +..++.+. | .+||+||+||.|+||+.|+..++...+++||+++...+
T Consensus 40 ss~li~~~-g~~~iLiD~G~g--~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~~l~Vyg~~~~~~ 116 (302)
T PRK05184 40 SSIAVSAD-GEDWVLLNASPD--IRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQPFPVYATPAVLE 116 (302)
T ss_pred cEEEEEcC-CCEEEEEECChh--HHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCCCeEEEeCHHHHH
Confidence 48888752 345799999943 22334432 2 37999999999999999999997666789999876554
Q ss_pred CCCC--------------ccEEecCCCEEEEC---CeEEEEEEcC------------CCCCCCEEEEeC----CCcEEEE
Q 026191 158 RIPG--------------IDIVLNDGDKWMFA---GHEVHVIDTP------------GHTRGHISFYFP----GSAAVFT 204 (242)
Q Consensus 158 ~~~~--------------~~~~~~~g~~~~~g---~~~i~~~~~p------------gHt~gs~~~~~~----~~~vlft 204 (242)
.+.. ....+..++.++++ +.+|+.+..+ -|...++.|.++ +++++|+
T Consensus 117 ~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~ 196 (302)
T PRK05184 117 DLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYA 196 (302)
T ss_pred HHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEE
Confidence 2211 12356667778886 7888888874 245668899982 4568999
Q ss_pred ccc
Q 026191 205 GDT 207 (242)
Q Consensus 205 GD~ 207 (242)
+|.
T Consensus 197 tD~ 199 (302)
T PRK05184 197 PGL 199 (302)
T ss_pred CCC
Confidence 776
No 28
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.26 E-value=3.4e-11 Score=104.94 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=83.2
Q ss_pred EEEEEECCCCeEEEEcCCC-cHHHHHHHHcC----C---CCccEEEcCCCCCCccCChHHHHHhcCCEEEeccccccCCC
Q 026191 89 AYLLHDMDTGTVGVVDPSE-AVPVIDALSRK----N---RNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIP 160 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g~-~~~~~~~l~~~----g---~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~ 160 (242)
+++|.+ +++..+|||+|. .......+++. | .+||+||+||.|.||+.|+..+++..+++||+++...+.+.
T Consensus 40 s~ll~~-~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~~lpVya~~~t~~~L~ 118 (302)
T TIGR02108 40 SIAVSA-DGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQPFTLYATEMVLQDLS 118 (302)
T ss_pred EEEEEe-CCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCCCceEEECHHHHHHHH
Confidence 778865 345689999993 22222222222 2 57999999999999999999998777899999988765442
Q ss_pred C---------c---cEEecCCCEEEEC-----CeEEEEEEcCC-------C------CCCCEEEEeC----CCcEEEEcc
Q 026191 161 G---------I---DIVLNDGDKWMFA-----GHEVHVIDTPG-------H------TRGHISFYFP----GSAAVFTGD 206 (242)
Q Consensus 161 ~---------~---~~~~~~g~~~~~g-----~~~i~~~~~pg-------H------t~gs~~~~~~----~~~vlftGD 206 (242)
. . ...+..++.+.++ +.+|+.+.++. | ..+.+.|.++ +++++|++|
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD 198 (302)
T TIGR02108 119 DNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPG 198 (302)
T ss_pred hCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECC
Confidence 1 0 1345666677664 47888888761 3 2367888884 457999999
Q ss_pred cc
Q 026191 207 TL 208 (242)
Q Consensus 207 ~~ 208 (242)
+-
T Consensus 199 ~g 200 (302)
T TIGR02108 199 CA 200 (302)
T ss_pred CC
Confidence 84
No 29
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.22 E-value=4.9e-11 Score=103.63 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=74.2
Q ss_pred eEEEEEECCCCeEEEEcCCCcHHHHHHHHcCC---CCccEEEcCCCCCCccCChHHHHHhc-------CCEEEecccccc
Q 026191 88 YAYLLHDMDTGTVGVVDPSEAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARY-------GAKVIGSGVDKD 157 (242)
Q Consensus 88 ~~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g---~~i~~vilTH~H~DH~gg~~~l~~~~-------~~~i~~~~~~~~ 157 (242)
++++|+.. +..+|||+|.. ....+.+.+ .++++||+||.|.||++|+..+.... +++||+++...+
T Consensus 19 ~~~~v~~~--~~~iLiD~G~g--~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~ 94 (299)
T TIGR02651 19 PSIALKLN--GELWLFDCGEG--TQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKE 94 (299)
T ss_pred ceEEEEEC--CeEEEEECCHH--HHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHH
Confidence 48888863 56899999954 334554444 47999999999999999999886532 457888876543
Q ss_pred CCC----------C---ccEEecCCC-EEEECCeEEEEEEcCCCCCCCEEEEeC
Q 026191 158 RIP----------G---IDIVLNDGD-KWMFAGHEVHVIDTPGHTRGHISFYFP 197 (242)
Q Consensus 158 ~~~----------~---~~~~~~~g~-~~~~g~~~i~~~~~pgHt~gs~~~~~~ 197 (242)
.+. . ....+.+++ .+..++.+++.+.+ -|...++.|.++
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~H~~~~~gy~i~ 147 (299)
T TIGR02651 95 FIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPL-DHSIPSLGYRFE 147 (299)
T ss_pred HHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEc-CCCCceEEEEEE
Confidence 221 0 123456676 58889989988887 477778887764
No 30
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.21 E-value=2.2e-11 Score=98.66 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=77.6
Q ss_pred EEEEcCCCcHH---HHHHHHcCC---CCccEEEcCCCCCCccCChHHHHHhc---CCEEEeccccccCCC----------
Q 026191 100 VGVVDPSEAVP---VIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARY---GAKVIGSGVDKDRIP---------- 160 (242)
Q Consensus 100 ~~liD~g~~~~---~~~~l~~~g---~~i~~vilTH~H~DH~gg~~~l~~~~---~~~i~~~~~~~~~~~---------- 160 (242)
.+|||+|.... +...+.... .+||+|++||.|.||+.|+..+.+.. +.+||+++...+.+.
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 81 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGILDLY 81 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHHTTC
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhccccccc
Confidence 68999996543 222333322 28999999999999999987775543 228999876554332
Q ss_pred -----CccEEecCCCEEEECCeEEEEEEcCCCCCCCEE----EEe--CCCcEEEEccccc
Q 026191 161 -----GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHIS----FYF--PGSAAVFTGDTLF 209 (242)
Q Consensus 161 -----~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~----~~~--~~~~vlftGD~~~ 209 (242)
.....+..++.+++++.+++++.+ .|..+..+ |.+ ++.+++|+||+-+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 82 PEEDNFDIIEISPGDEFEIGDFRITPFPA-NHGPPSYGGNKGFVIEPDGKKIFYSGDTNY 140 (194)
T ss_dssp CTTSGEEEEEECTTEEEEETTEEEEEEEE-ESSSCCEEECCEEEEEETTEEEEEETSSSS
T ss_pred ccccceeEEEeccCceEEeceEEEEEEec-cccccccccCceEEEecCCcceEEeeccch
Confidence 123567778899999999999987 57777765 666 4789999999988
No 31
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.20 E-value=3.4e-11 Score=108.04 Aligned_cols=134 Identities=20% Similarity=0.216 Sum_probs=98.0
Q ss_pred ccceEEEecc---ccceeEEEEEECCCCeEEEEcCC---Cc--HHHHHHHHcCC---CCccEEEcCCCCCCccCChHHHH
Q 026191 74 SSLQIELVPC---LRDNYAYLLHDMDTGTVGVVDPS---EA--VPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELK 142 (242)
Q Consensus 74 ~~~~i~~~~~---~~~~~~~lI~~~d~g~~~liD~g---~~--~~~~~~l~~~g---~~i~~vilTH~H~DH~gg~~~l~ 142 (242)
..++++.+++ .+.. |+|+.++++ .+|+||| .. ....+++..-. ..+|+||+||.|-||+|-++.|-
T Consensus 179 ~wvRvt~LGg~~EVGRS-a~lv~T~eS--rVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lf 255 (637)
T COG1782 179 RWVRVTALGGFREVGRS-ALLVSTPES--RVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLF 255 (637)
T ss_pred ceEEEEeeccchhccce-eEEEecCCc--eEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhh
Confidence 3455666655 2333 888887655 8999998 11 34445544321 37999999999999999999986
Q ss_pred Hh-cCCEEEeccccccCC-----------------C-----------CccEEecCCCEEEE-CCeEEEEEEcCCCCCCCE
Q 026191 143 AR-YGAKVIGSGVDKDRI-----------------P-----------GIDIVLNDGDKWMF-AGHEVHVIDTPGHTRGHI 192 (242)
Q Consensus 143 ~~-~~~~i~~~~~~~~~~-----------------~-----------~~~~~~~~g~~~~~-g~~~i~~~~~pgHt~gs~ 192 (242)
+. |+-+|||++++.+.. + .-+.++..|+.-++ .+.++.+.++ ||--||.
T Consensus 256 kYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NA-GHILGSA 334 (637)
T COG1782 256 KYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNA-GHILGSA 334 (637)
T ss_pred hcCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecc-cchhcce
Confidence 63 467999998876532 0 11467888888888 5789999996 9999999
Q ss_pred EEEeC----CCcEEEEccccccc
Q 026191 193 SFYFP----GSAAVFTGDTLFSL 211 (242)
Q Consensus 193 ~~~~~----~~~vlftGD~~~~~ 211 (242)
+..+. ..+++||||.=|..
T Consensus 335 ~~HlHIGdGlyNi~yTGDfk~~~ 357 (637)
T COG1782 335 MAHLHIGDGLYNIVYTGDFKFEK 357 (637)
T ss_pred eeEEEecCCceeEEEecccccce
Confidence 88873 35899999997743
No 32
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.19 E-value=1.4e-10 Score=101.11 Aligned_cols=107 Identities=17% Similarity=0.092 Sum_probs=73.5
Q ss_pred eEEEEEECC--CCeEEEEcCCCcHHHHHHHHcCC---CCccEEEcCCCCCCccCChHHHHHh-------cCCEEEecccc
Q 026191 88 YAYLLHDMD--TGTVGVVDPSEAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKAR-------YGAKVIGSGVD 155 (242)
Q Consensus 88 ~~~lI~~~d--~g~~~liD~g~~~~~~~~l~~~g---~~i~~vilTH~H~DH~gg~~~l~~~-------~~~~i~~~~~~ 155 (242)
.+|+|...+ .+..+|||+|..- ...+.+.+ .+||+||+||.|.||++|+..+... .+++||+++..
T Consensus 18 s~~lv~~~~~~~~~~iLiD~G~g~--~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~ 95 (303)
T TIGR02649 18 TAILLNLQHPTQSGLWLFDCGEGT--QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGI 95 (303)
T ss_pred cEEEEEccCCCCCCEEEEECCccH--HHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhH
Confidence 378886421 1468999999553 23444443 5899999999999999999887532 14689998765
Q ss_pred ccCCC-------------CccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeC
Q 026191 156 KDRIP-------------GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP 197 (242)
Q Consensus 156 ~~~~~-------------~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~ 197 (242)
.+.+. .....+..++.+..++.+++.+.. -|+..++.|.++
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~-~H~~~~~gy~i~ 149 (303)
T TIGR02649 96 REFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPL-EHPLECYGYRIE 149 (303)
T ss_pred HHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEc-cCccceEEEEEe
Confidence 43221 112345667777778878888876 577778888874
No 33
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.6e-11 Score=108.19 Aligned_cols=117 Identities=22% Similarity=0.233 Sum_probs=87.4
Q ss_pred EEEEEECCCCeEEEEcCCCcHH----HHHHHHcCCCCccEEEcCCCCCCccCChHHHHHh-cCCEEEeccccccCC----
Q 026191 89 AYLLHDMDTGTVGVVDPSEAVP----VIDALSRKNRNLTYILNTHHHHDHTGGNLELKAR-YGAKVIGSGVDKDRI---- 159 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g~~~~----~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~-~~~~i~~~~~~~~~~---- 159 (242)
|.+|... +..+++|+|.... ..+..... .++|++++||.|.||+|+++.+... ++.+||+++.+....
T Consensus 16 ~~~l~~~--~~~il~D~G~~~~~~~~~~p~~~~~-~~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~l 92 (427)
T COG1236 16 CVLLETG--GTRILLDCGLFPGDPSPERPLLPPF-PKVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVLL 92 (427)
T ss_pred EEEEEEC--CceEEEECCCCcCcCCccCCCCCCC-CCcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHHHHHHH
Confidence 7888763 4699999993221 11111111 2589999999999999999998663 467899887765422
Q ss_pred ------C-----------------CccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeC--CCcEEEEccccc
Q 026191 160 ------P-----------------GIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--GSAAVFTGDTLF 209 (242)
Q Consensus 160 ------~-----------------~~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~--~~~vlftGD~~~ 209 (242)
. ...+.+.-|+.+++++.+++++++ ||.+|+..+.++ +.+++||||.=.
T Consensus 93 ~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~A-GHilGsa~~~le~~~~~ilytGD~~~ 166 (427)
T COG1236 93 GDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNA-GHILGSAAILLEVDGGRILYTGDVKR 166 (427)
T ss_pred HHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecC-CCccceeEEEEEeCCceEEEEeccCC
Confidence 1 113458899999999988888886 999999999986 667999999875
No 34
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.06 E-value=3.8e-10 Score=94.23 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=58.4
Q ss_pred ceeEEEEEECCCCeEEEEcCC-CcHHHHHHHHcCC---CCccEEEcCCCCCCccCChHHHHHhc--CCEEEecccccc
Q 026191 86 DNYAYLLHDMDTGTVGVVDPS-EAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARY--GAKVIGSGVDKD 157 (242)
Q Consensus 86 ~~~~~lI~~~d~g~~~liD~g-~~~~~~~~l~~~g---~~i~~vilTH~H~DH~gg~~~l~~~~--~~~i~~~~~~~~ 157 (242)
...++||++. +..+|||+| ....++..++..| .+||++++||.|+||+||+.++.+.- +++||+++....
T Consensus 21 hGfS~LVE~~--~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 21 HGFSALVEDE--GTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred CceEEEEEcC--CeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 4458999863 579999999 7777888899888 48999999999999999999987643 678999876644
No 35
>PRK00055 ribonuclease Z; Reviewed
Probab=99.01 E-value=4.2e-10 Score=96.04 Aligned_cols=67 Identities=25% Similarity=0.214 Sum_probs=48.4
Q ss_pred eeEEEEEECCCCeEEEEcCCCcHHHHHHHHcCC---CCccEEEcCCCCCCccCChHHHHHhc-------CCEEEeccccc
Q 026191 87 NYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARY-------GAKVIGSGVDK 156 (242)
Q Consensus 87 ~~~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g---~~i~~vilTH~H~DH~gg~~~l~~~~-------~~~i~~~~~~~ 156 (242)
+++++|... +..+|||+|.. ....+.+.+ .+|++||+||.|.||++|+..+...+ ++.||+++...
T Consensus 20 ~~~~li~~~--~~~iLiD~G~g--~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~ 95 (270)
T PRK00055 20 VSSILLRLG--GELFLFDCGEG--TQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIK 95 (270)
T ss_pred CCEEEEEEC--CcEEEEECCHH--HHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHH
Confidence 458999863 56899999954 223443333 47999999999999999998876432 45688876544
Q ss_pred c
Q 026191 157 D 157 (242)
Q Consensus 157 ~ 157 (242)
+
T Consensus 96 ~ 96 (270)
T PRK00055 96 E 96 (270)
T ss_pred H
Confidence 3
No 36
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.92 E-value=3.7e-09 Score=90.90 Aligned_cols=133 Identities=16% Similarity=0.216 Sum_probs=92.2
Q ss_pred ceEEEeccccc--eeEEEEEECCCCeEEEEcCC------CcHHH--HHHHHcCC---CCccEEEcCCCCCCccCChHHHH
Q 026191 76 LQIELVPCLRD--NYAYLLHDMDTGTVGVVDPS------EAVPV--IDALSRKN---RNLTYILNTHHHHDHTGGNLELK 142 (242)
Q Consensus 76 ~~i~~~~~~~~--~~~~lI~~~d~g~~~liD~g------~~~~~--~~~l~~~g---~~i~~vilTH~H~DH~gg~~~l~ 142 (242)
+++..++.+|+ ..|.|+.- +|+.+++|+| +.++. ..++.+.| .-||-||+||.|-||+|.++++.
T Consensus 4 i~v~pLGAGQdvGrSCilvsi--~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfs 81 (501)
T KOG1136|consen 4 IKVTPLGAGQDVGRSCILVSI--GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFS 81 (501)
T ss_pred ceEEeccCCcccCceEEEEEE--CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchH
Confidence 34444444433 22666654 5789999998 12221 23455555 47999999999999999999998
Q ss_pred Hhc--CCEEEeccccccCCCC-----------------------------ccEEecCCCEEEEC-CeEEEEEEcCCCCCC
Q 026191 143 ARY--GAKVIGSGVDKDRIPG-----------------------------IDIVLNDGDKWMFA-GHEVHVIDTPGHTRG 190 (242)
Q Consensus 143 ~~~--~~~i~~~~~~~~~~~~-----------------------------~~~~~~~g~~~~~g-~~~i~~~~~pgHt~g 190 (242)
+.. +-+||.+.++.+..|- ....+.-.+++.++ +..++.++. ||--|
T Consensus 82 Ev~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYA-GHVLG 160 (501)
T KOG1136|consen 82 EVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYA-GHVLG 160 (501)
T ss_pred hhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeec-ccccc
Confidence 875 5689987665543210 12344455677774 577888886 99999
Q ss_pred CEEEEeC--CCcEEEEccccccc
Q 026191 191 HISFYFP--GSAAVFTGDTLFSL 211 (242)
Q Consensus 191 s~~~~~~--~~~vlftGD~~~~~ 211 (242)
...+++. ++++++|||.-...
T Consensus 161 AaMf~ikvGd~svvYTGDYnmTp 183 (501)
T KOG1136|consen 161 AAMFYIKVGDQSVVYTGDYNMTP 183 (501)
T ss_pred eeEEEEEecceeEEEecCccCCc
Confidence 9999985 77999999986543
No 37
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.89 E-value=9.6e-09 Score=91.33 Aligned_cols=91 Identities=27% Similarity=0.461 Sum_probs=63.0
Q ss_pred CCccEEEcCCCCCCccC--ChHHHHHhc--CCEEEeccccccCC-----C-CccEEecCCCEEEECCeEEEEEEc-----
Q 026191 120 RNLTYILNTHHHHDHTG--GNLELKARY--GAKVIGSGVDKDRI-----P-GIDIVLNDGDKWMFAGHEVHVIDT----- 184 (242)
Q Consensus 120 ~~i~~vilTH~H~DH~g--g~~~l~~~~--~~~i~~~~~~~~~~-----~-~~~~~~~~g~~~~~g~~~i~~~~~----- 184 (242)
.+||+|++||.|.||+. .+..+.+.+ ++.++++....+.+ + .....++.|+.+.+++.+|+++..
T Consensus 108 ~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~~~ 187 (355)
T PRK11709 108 REIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSFDRTA 187 (355)
T ss_pred CCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEecccccc
Confidence 47999999999999995 345555544 35677766544322 2 234578899999999999998865
Q ss_pred ----C-CCCC-----------CCEEEEe--CCCcEEEEcccccc
Q 026191 185 ----P-GHTR-----------GHISFYF--PGSAAVFTGDTLFS 210 (242)
Q Consensus 185 ----p-gHt~-----------gs~~~~~--~~~~vlftGD~~~~ 210 (242)
| .|.. ..+.|.+ ++.+++|+||+-+.
T Consensus 188 ~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~ 231 (355)
T PRK11709 188 LVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYS 231 (355)
T ss_pred ccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCcc
Confidence 1 1221 1355565 57899999999763
No 38
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.87 E-value=2.6e-09 Score=95.65 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=104.9
Q ss_pred ccceeEEEEEECCCCeEEEEcCCC----cHHHHHHH-HcCC-CCccEEEcCCCCCCccCChHHHHHhc-----CCEEEec
Q 026191 84 LRDNYAYLLHDMDTGTVGVVDPSE----AVPVIDAL-SRKN-RNLTYILNTHHHHDHTGGNLELKARY-----GAKVIGS 152 (242)
Q Consensus 84 ~~~~~~~lI~~~d~g~~~liD~g~----~~~~~~~l-~~~g-~~i~~vilTH~H~DH~gg~~~l~~~~-----~~~i~~~ 152 (242)
+.-.|..+|+. |+| .++|||-- .+..++.. +.+| ++|.+||.||.|.||.||..-+.+.- +++|+++
T Consensus 123 ~DisNITfveG-dtg-~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP 200 (655)
T COG2015 123 FDISNITFVEG-DTG-WIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAP 200 (655)
T ss_pred ccccceEEEcC-Ccc-eEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecc
Confidence 44455777876 344 99999862 22222322 3466 68999999999999999997664332 5678887
Q ss_pred cccccCC-----------------------C-----------------------CccE-EecCCCEEEECCeEEEEEEcC
Q 026191 153 GVDKDRI-----------------------P-----------------------GIDI-VLNDGDKWMFAGHEVHVIDTP 185 (242)
Q Consensus 153 ~~~~~~~-----------------------~-----------------------~~~~-~~~~g~~~~~g~~~i~~~~~p 185 (242)
..-++.. + .++. ....|+++.++|++++|..||
T Consensus 201 ~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G~vsLiaPT~~I~~~gE~~~iDGV~~~Fq~tP 280 (655)
T COG2015 201 AGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATGEVSLIAPTKIIEETGETLTIDGVEFEFQMTP 280 (655)
T ss_pred hhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccccccccccCceeeecceEEeeccCceEEEeceEEEEeeCC
Confidence 5543321 0 1222 335689999999999999999
Q ss_pred C-CCCCCEEEEeCCCcEEEEcccccccccCCC-----CCCCHHHHHHHHHHhcCCCCCC
Q 026191 186 G-HTRGHISFYFPGSAAVFTGDTLFSLSCGKL-----FEGTPGQLIVYVTDVFFPSEDN 238 (242)
Q Consensus 186 g-Ht~gs~~~~~~~~~vlftGD~~~~~~~~~~-----~~~~~~~~~~sl~~l~~~~~~~ 238 (242)
| ..|.-|-+|+|..++|.+..-....-+..+ ...|..+|-.-|.+.+.++.+.
T Consensus 281 gtEaPAEM~~y~P~~kaL~mAEnat~~lHNlytlRGa~vRD~~~Ws~ylneal~~fg~~ 339 (655)
T COG2015 281 GTEAPAEMHFYFPRLKALCMAENATHTLHNLYTLRGAEVRDAKAWSKYLNEALDMFGDD 339 (655)
T ss_pred CCCCcHHHhhhhhHHHHHHHHhhccccceeeeecccceecchHHHHHHHHHHHHHhccc
Confidence 8 678899999998888876655544333221 2368899999888877766554
No 39
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.74 E-value=6.2e-08 Score=76.83 Aligned_cols=127 Identities=23% Similarity=0.337 Sum_probs=71.3
Q ss_pred ccceeEEEEEECCCCeEEEEcCCCcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcCCEEEeccccccCCCCcc
Q 026191 84 LRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIPGID 163 (242)
Q Consensus 84 ~~~~~~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~~~ 163 (242)
++++ +++|+. .|..+++||.... ........++|+|++||.|.||+.--. +.+. ....
T Consensus 5 lgha-~~~ie~--~g~~iliDP~~~~---~~~~~~~~~~D~IlisH~H~DH~~~~~-l~~~---------------~~~~ 62 (163)
T PF13483_consen 5 LGHA-SFLIET--GGKRILIDPWFSS---VGYAPPPPKADAILISHSHPDHFDPET-LKRL---------------DRDI 62 (163)
T ss_dssp EETT-EEEEEE--TTEEEEES--TTT-----T-TSS-B-SEEEESSSSTTT-CCCC-CCCH---------------HTSS
T ss_pred EEee-EEEEEE--CCEEEEECCCCCc---cCcccccCCCCEEEECCCccccCChhH-hhhc---------------cccc
Confidence 3454 999997 3779999998420 111222368999999999999998621 1110 2233
Q ss_pred EEecCCCEEEECCeEEEEEEcC-----CCCCC-CEEEEe--CCCcEEEEcccccccc------c----------CCCCCC
Q 026191 164 IVLNDGDKWMFAGHEVHVIDTP-----GHTRG-HISFYF--PGSAAVFTGDTLFSLS------C----------GKLFEG 219 (242)
Q Consensus 164 ~~~~~g~~~~~g~~~i~~~~~p-----gHt~g-s~~~~~--~~~~vlftGD~~~~~~------~----------~~~~~~ 219 (242)
..+..++.+++++.+++.+... ++..+ .++|++ ++.++++.||+.+... . +.-+..
T Consensus 63 ~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~~~~~~~~~~~vDvl~~p~~g~~~~ 142 (163)
T PF13483_consen 63 HVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPPDDEQLKQLGKVDVLFLPVGGPFTM 142 (163)
T ss_dssp EEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S---HHHHHHH-S-SEEEEE--TTTS-
T ss_pred EEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCCCHHHHhcccCCCEEEecCCCCccc
Confidence 4555578889999888888742 34444 566666 4779999999987321 1 111244
Q ss_pred CHHHHHHHHHHhc
Q 026191 220 TPGQLIVYVTDVF 232 (242)
Q Consensus 220 ~~~~~~~sl~~l~ 232 (242)
+.+++.+.++++.
T Consensus 143 ~~~~a~~~~~~l~ 155 (163)
T PF13483_consen 143 GPEEAAELAERLK 155 (163)
T ss_dssp -HHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcC
Confidence 6777777777654
No 40
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.41 E-value=3.5e-06 Score=71.84 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=75.8
Q ss_pred cceEEEeccccceeEEEEEECCCCeEEEEcCCCcHHHHHH----H--HcCCCCccEEEcCCCCCCccCChHHHHHhcC-C
Q 026191 75 SLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDA----L--SRKNRNLTYILNTHHHHDHTGGNLELKARYG-A 147 (242)
Q Consensus 75 ~~~i~~~~~~~~~~~~lI~~~d~g~~~liD~g~~~~~~~~----l--~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~-~ 147 (242)
.|++.. ++++ +++|+. ++..+||||.-....... . ...-.++|+|++||.|.||++--.......+ +
T Consensus 6 ~m~itw---lGha-~~lie~--~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~ 79 (258)
T COG2220 6 DMKITW---LGHA-AFLIET--GGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKA 79 (258)
T ss_pred CceEEE---ecce-EEEEEE--CCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCC
Confidence 455554 4454 999987 357899998611100000 0 1112479999999999999997765544323 5
Q ss_pred E-EEecccccc-----CCC-CccEEecCCCEEEECCeEEEEEEc---C-CCC--------CCCEEEEe--CCCcEEEEcc
Q 026191 148 K-VIGSGVDKD-----RIP-GIDIVLNDGDKWMFAGHEVHVIDT---P-GHT--------RGHISFYF--PGSAAVFTGD 206 (242)
Q Consensus 148 ~-i~~~~~~~~-----~~~-~~~~~~~~g~~~~~g~~~i~~~~~---p-gHt--------~gs~~~~~--~~~~vlftGD 206 (242)
+ ++.+..... ... .....+..|+.+++++.++.++.. + .+. -...++.+ ++.++++.||
T Consensus 80 ~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GD 159 (258)
T COG2220 80 PVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGD 159 (258)
T ss_pred cEEEeHHHHHHHHHhcCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccC
Confidence 4 444444311 111 124456678889998877655541 1 122 22344444 4789999999
Q ss_pred ccc
Q 026191 207 TLF 209 (242)
Q Consensus 207 ~~~ 209 (242)
+-+
T Consensus 160 t~~ 162 (258)
T COG2220 160 TGY 162 (258)
T ss_pred ccH
Confidence 954
No 41
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.38 E-value=3.3e-07 Score=83.45 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=81.3
Q ss_pred EEEEEECCCCeEEEEcCCC-----cHHHHHHHHcCC-CCccEEEcCCCCCCccCChHHHHHhc--CCEEEeccccccCCC
Q 026191 89 AYLLHDMDTGTVGVVDPSE-----AVPVIDALSRKN-RNLTYILNTHHHHDHTGGNLELKARY--GAKVIGSGVDKDRIP 160 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g~-----~~~~~~~l~~~g-~~i~~vilTH~H~DH~gg~~~l~~~~--~~~i~~~~~~~~~~~ 160 (242)
|.+++- .|++++.|||- +-.-++++..-. ..||.+++||.|.||++.++++.++. .-.++.+..+..-..
T Consensus 29 C~ile~--kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~k 106 (668)
T KOG1137|consen 29 CHILEY--KGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYK 106 (668)
T ss_pred EEEEEe--cCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecchHHHHH
Confidence 677765 58899999982 111223333322 47999999999999999999997764 345555443332110
Q ss_pred -------------C---------------ccEEecCCCEEEECCeEEEEEEcCCCCCCCEEEEeC--CCcEEEEcccccc
Q 026191 161 -------------G---------------IDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP--GSAAVFTGDTLFS 210 (242)
Q Consensus 161 -------------~---------------~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~--~~~vlftGD~~~~ 210 (242)
. ....+.--++.+..|.+|..++ .||--|...|.++ +-++|||||..-.
T Consensus 107 wllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~veiagv~lLyTGd~sre 185 (668)
T KOG1137|consen 107 WLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEIAGVRLLYTGDYSRE 185 (668)
T ss_pred hhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec-cchhhhheeeeeeeceEEEEeccccchh
Confidence 0 0123333455677888888888 5999999999986 7789999998753
No 42
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.31 E-value=5.3e-06 Score=77.45 Aligned_cols=119 Identities=19% Similarity=0.145 Sum_probs=84.9
Q ss_pred eEEEEEECCCCeEEEEcCCCcHH----HHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhc--CCEEEeccccccC---
Q 026191 88 YAYLLHDMDTGTVGVVDPSEAVP----VIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY--GAKVIGSGVDKDR--- 158 (242)
Q Consensus 88 ~~~lI~~~d~g~~~liD~g~~~~----~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~--~~~i~~~~~~~~~--- 158 (242)
.||+++-+ +-.+|||||+.+. .++.+++.-.+||+|++||++.=|+||+++....+ +++||++-+....
T Consensus 16 ~cyllqiD--~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m 93 (764)
T KOG1135|consen 16 LCYLLQID--GVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQM 93 (764)
T ss_pred ceEEEEEc--CeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhh
Confidence 48999874 5599999996443 34445544468999999999999999999987665 6789987543321
Q ss_pred --------------C-----C------CccEEecCCCEEEECC----eEEEEEEcCCCCCCCEEEEe--CCCcEEEEccc
Q 026191 159 --------------I-----P------GIDIVLNDGDKWMFAG----HEVHVIDTPGHTRGHISFYF--PGSAAVFTGDT 207 (242)
Q Consensus 159 --------------~-----~------~~~~~~~~g~~~~~g~----~~i~~~~~pgHt~gs~~~~~--~~~~vlftGD~ 207 (242)
+ . .....++..|...+.| .++..++. ||.+|.....+ .+.+++++=|.
T Consensus 94 ~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynA-GhmiGGsIWkI~k~~E~ivYavd~ 172 (764)
T KOG1135|consen 94 FMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNA-GHMIGGSIWKISKVGEDIVYAVDF 172 (764)
T ss_pred hHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecC-CCccCceEEEEEecCceEEEEEec
Confidence 0 0 0134677778887744 36777765 99999877666 35788888876
Q ss_pred cc
Q 026191 208 LF 209 (242)
Q Consensus 208 ~~ 209 (242)
=+
T Consensus 173 NH 174 (764)
T KOG1135|consen 173 NH 174 (764)
T ss_pred cc
Confidence 55
No 43
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.27 E-value=2.3e-06 Score=74.37 Aligned_cols=64 Identities=30% Similarity=0.288 Sum_probs=45.4
Q ss_pred EEEEEECCCCeEEEEcCCCcHHHHHHHHcCC---CCccEEEcCCCCCCccCChHHHHHhc-------CCEEEeccccc
Q 026191 89 AYLLHDMDTGTVGVVDPSEAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARY-------GAKVIGSGVDK 156 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g---~~i~~vilTH~H~DH~gg~~~l~~~~-------~~~i~~~~~~~ 156 (242)
+++|.. .++..|||||++.. ..+...+ .+|++|++||.|.||+.|+..+.... +..||.++...
T Consensus 22 s~ll~~--~~~~~L~DcGeGt~--~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~ 95 (292)
T COG1234 22 SILLRL--EGEKFLFDCGEGTQ--HQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIK 95 (292)
T ss_pred eeEEEe--CCeeEEEECCHhHH--HHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchh
Confidence 677775 36688999995432 3344333 47999999999999999998764432 35788875533
No 44
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=1.2e-06 Score=74.48 Aligned_cols=112 Identities=23% Similarity=0.269 Sum_probs=78.9
Q ss_pred EEEEEECCCCeEEEEcCCCcHHHHHHHHcCC---CCccEEEcCCCCCCccCChHHHHHhcCCEEEeccccccCCCCccEE
Q 026191 89 AYLLHDMDTGTVGVVDPSEAVPVIDALSRKN---RNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIPGIDIV 165 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g~~~~~~~~l~~~g---~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~~~~~ 165 (242)
..++. |++..+++|+|-. .|.+.| .+|+.+++||.|++|+|++..+... +++.+.-+..--......
T Consensus 97 ~tl~~--d~~~v~v~~~gls-----~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~s---p~l~~s~e~~gr~~~pt~ 166 (302)
T KOG4736|consen 97 ITLVV--DGGDVVVVDTGLS-----VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQS---PILYHSMEYIGRHVTPTE 166 (302)
T ss_pred cceee--cCCceEEEecCCc-----hhhhcCcChhhcceeEEeccCcccccccccccCC---HHHhhhhhhcCCccChhh
Confidence 44554 4677999999844 466666 5899999999999999999877543 222222222111122345
Q ss_pred ecCCCEEEECCeEEEEEEcCCCCCCCEEEEeC----CCcEEEEccccccc
Q 026191 166 LNDGDKWMFAGHEVHVIDTPGHTRGHISFYFP----GSAAVFTGDTLFSL 211 (242)
Q Consensus 166 ~~~g~~~~~g~~~i~~~~~pgHt~gs~~~~~~----~~~vlftGD~~~~~ 211 (242)
++.+..++++. .+++..+|||++.++.+.+. ..++.++||++-..
T Consensus 167 l~e~~~~~l~~-~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf~~~ 215 (302)
T KOG4736|consen 167 LDERPYLKLSP-NVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLFPRE 215 (302)
T ss_pred hccCCccccCC-ceeEeeCCCCCCcceEEEEEeecccceEEEEeecccCC
Confidence 67777788873 47888899999999988874 46899999998754
No 45
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.16 E-value=3.1e-06 Score=72.64 Aligned_cols=54 Identities=26% Similarity=0.286 Sum_probs=38.6
Q ss_pred eEEEEcCCCcHHHHHHHHcCC-CCccEEEcCCCCCCccCChHHHHHhcCCEEEeccc
Q 026191 99 TVGVVDPSEAVPVIDALSRKN-RNLTYILNTHHHHDHTGGNLELKARYGAKVIGSGV 154 (242)
Q Consensus 99 ~~~liD~g~~~~~~~~l~~~g-~~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~ 154 (242)
++++||.|.. +.....+.+ .++|+||+||.|.||+.|+..|++.+..++++...
T Consensus 41 ~~~lid~g~~--~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~~~~~~~~~~ 95 (269)
T COG1235 41 KTLLIDAGPD--LRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAYTLPIYVNPG 95 (269)
T ss_pred eeEEEecChh--HHhhhhcccccccCeEEEecccHHhhcChHHHHHHhcCCcccccc
Confidence 3778998832 122222222 47999999999999999999999988666665543
No 46
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.14 E-value=2.7e-05 Score=65.03 Aligned_cols=148 Identities=17% Similarity=0.163 Sum_probs=86.4
Q ss_pred EEEEEECCCCeEEEEcCC-----------CcH-------HHHHHHHcCCCCccEEEcCCCCCCccCCh---------HHH
Q 026191 89 AYLLHDMDTGTVGVVDPS-----------EAV-------PVIDALSRKNRNLTYILNTHHHHDHTGGN---------LEL 141 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g-----------~~~-------~~~~~l~~~g~~i~~vilTH~H~DH~gg~---------~~l 141 (242)
+.+|++. +-.+|||+| ..+ +..+.+++.-++.+.+.+||.|.||.--. ..-
T Consensus 17 At~vet~--dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~ 94 (304)
T COG2248 17 ATFVETK--DVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETA 94 (304)
T ss_pred hheeecC--CeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccch
Confidence 6677764 458999998 111 12233444446788999999999998651 111
Q ss_pred HHhcCCEEE-e-ccccc-cCC--------------CCccEEecCCCEEEECCeEEEEEEcCCCCCC-C-----EEEEe--
Q 026191 142 KARYGAKVI-G-SGVDK-DRI--------------PGIDIVLNDGDKWMFAGHEVHVIDTPGHTRG-H-----ISFYF-- 196 (242)
Q Consensus 142 ~~~~~~~i~-~-~~~~~-~~~--------------~~~~~~~~~g~~~~~g~~~i~~~~~pgHt~g-s-----~~~~~-- 196 (242)
.+-|.-+++ . ++.+. .+- ......+.||.++++|+.++++-.+--|-++ + +.+.+
T Consensus 95 ~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~d 174 (304)
T COG2248 95 KEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTD 174 (304)
T ss_pred HHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEec
Confidence 222322222 1 22111 100 1235678899999999999988764345554 2 12222
Q ss_pred CCCcEEEEcccccc-------------------cccCC------CCCCCHHHHHHHHHHhcCCCCCC
Q 026191 197 PGSAAVFTGDTLFS-------------------LSCGK------LFEGTPGQLIVYVTDVFFPSEDN 238 (242)
Q Consensus 197 ~~~~vlftGD~~~~-------------------~~~~~------~~~~~~~~~~~sl~~l~~~~~~~ 238 (242)
.+.+++|+.|.-=. ++++. +...+.+..++.++++.+.....
T Consensus 175 g~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~ 241 (304)
T COG2248 175 GKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNAT 241 (304)
T ss_pred CCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcce
Confidence 25689999998621 12222 12356677788888887766544
No 47
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.03 E-value=1.3e-05 Score=68.61 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=37.9
Q ss_pred CeEEEEc-CCCcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHH-h-c------CCEEEecccccc
Q 026191 98 GTVGVVD-PSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKA-R-Y------GAKVIGSGVDKD 157 (242)
Q Consensus 98 g~~~liD-~g~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~-~-~------~~~i~~~~~~~~ 157 (242)
...+++| .|.. ....|...-..++++|+||.|.||++|+..+.- + . +..||.++...+
T Consensus 18 ~~~ilfD~ag~g--~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~ 84 (277)
T TIGR02650 18 PEEIIFDAAEEG--SSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNA 84 (277)
T ss_pred chhheehhhccc--chhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhH
Confidence 3479999 7743 222333333468899999999999999954422 1 1 356888876443
No 48
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=97.33 E-value=0.00031 Score=64.19 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=66.4
Q ss_pred CccEEEcCCCCCCccCChHHHHHhcCCEEEeccccccCCCC-------ccEEecCCCEEEECCeEEEEEEcCCCCCCCEE
Q 026191 121 NLTYILNTHHHHDHTGGNLELKARYGAKVIGSGVDKDRIPG-------IDIVLNDGDKWMFAGHEVHVIDTPGHTRGHIS 193 (242)
Q Consensus 121 ~i~~vilTH~H~DH~gg~~~l~~~~~~~i~~~~~~~~~~~~-------~~~~~~~g~~~~~g~~~i~~~~~pgHt~gs~~ 193 (242)
...+-++||.|.||..|+..--. .-++||+..++..+.. ..+.+.-++.+.+.+..+.++.. -|.||++.
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~--~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldA-nHCPGa~m 188 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWS--HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDA-NHCPGAVM 188 (481)
T ss_pred ccceeeeeccccccccccccccc--CCcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEecc-ccCCCceE
Confidence 56788999999999988854321 1239999887765532 34566778888998888888886 79999999
Q ss_pred EEeC---CCcEEEEcccccc
Q 026191 194 FYFP---GSAAVFTGDTLFS 210 (242)
Q Consensus 194 ~~~~---~~~vlftGD~~~~ 210 (242)
++++ +..+|.|||.=+.
T Consensus 189 f~F~~~~~~~~lhtGDFR~s 208 (481)
T KOG1361|consen 189 FLFELSFGPCILHTGDFRAS 208 (481)
T ss_pred EEeecCCCceEEecCCcccC
Confidence 9986 4589999997553
No 49
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.77 E-value=0.0032 Score=55.64 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=26.0
Q ss_pred CccEEEcCCCCCCccCChHHHHHh------cCCEEEeccccccC
Q 026191 121 NLTYILNTHHHHDHTGGNLELKAR------YGAKVIGSGVDKDR 158 (242)
Q Consensus 121 ~i~~vilTH~H~DH~gg~~~l~~~------~~~~i~~~~~~~~~ 158 (242)
.|...++||+|-||+.|+---... -+-+||+.+.+.+.
T Consensus 79 ~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~a 122 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEA 122 (335)
T ss_pred hhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHH
Confidence 678999999999999998432111 13467776665543
No 50
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=92.47 E-value=0.074 Score=50.94 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=36.2
Q ss_pred EEEEEECCCCeEEEEcCCCcH--HHHHHHH-cCC----CCccEEEcCCCCCCccCChHHHHHh
Q 026191 89 AYLLHDMDTGTVGVVDPSEAV--PVIDALS-RKN----RNLTYILNTHHHHDHTGGNLELKAR 144 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g~~~--~~~~~l~-~~g----~~i~~vilTH~H~DH~gg~~~l~~~ 144 (242)
+++|..+ ....++.|||+.. ++..... ... .++++|++||.|.||.-|+..+.++
T Consensus 463 S~lv~i~-~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~ 524 (746)
T KOG2121|consen 463 SILVRID-SDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQA 524 (746)
T ss_pred EEEEecc-CCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHH
Confidence 6777653 3336999999431 1222111 111 4788999999999999999876554
No 51
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=91.55 E-value=0.19 Score=43.02 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=26.6
Q ss_pred CccEEEcCCCCCCccCChH----HHHHhcCCEEEeccccccC
Q 026191 121 NLTYILNTHHHHDHTGGNL----ELKARYGAKVIGSGVDKDR 158 (242)
Q Consensus 121 ~i~~vilTH~H~DH~gg~~----~l~~~~~~~i~~~~~~~~~ 158 (242)
.|..-++||+|-||+.|+- .+-++-+-+||..+.+.+.
T Consensus 112 ~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDv 153 (356)
T COG5212 112 SINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDV 153 (356)
T ss_pred hhhheEeccccccchhceeecCccccccCCceEEechhHHHH
Confidence 6888899999999999973 3333324467776655543
No 52
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=91.34 E-value=3 Score=36.15 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred EEEEEECCCCeEEEEcCC-CcHHHHHHHHcC---CCCccEEEcCCCCCCccCChHHHHHhc-CCEEEeccccccC---CC
Q 026191 89 AYLLHDMDTGTVGVVDPS-EAVPVIDALSRK---NRNLTYILNTHHHHDHTGGNLELKARY-GAKVIGSGVDKDR---IP 160 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g-~~~~~~~~l~~~---g~~i~~vilTH~H~DH~gg~~~l~~~~-~~~i~~~~~~~~~---~~ 160 (242)
+.+|.-. +|+.++..|- ..+++.+.|++. +.+++||+.--...-|---+..+.++| ++++|+.++-... ++
T Consensus 22 MTVVrL~-~G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg~~s~p~~lp 100 (285)
T PF14234_consen 22 MTVVRLS-DGGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPGQWSFPLNLP 100 (285)
T ss_pred EEEEEEC-CCCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCCcccccccCc
Confidence 6666654 3567777775 455566666554 679999999766556888888888888 7899998774321 11
Q ss_pred C------ccEEec-CCCEEEE-CCeEEEEEEc---CCCCCCCEEEEeCCCcEEEEccccccc
Q 026191 161 G------IDIVLN-DGDKWMF-AGHEVHVIDT---PGHTRGHISFYFPGSAAVFTGDTLFSL 211 (242)
Q Consensus 161 ~------~~~~~~-~g~~~~~-g~~~i~~~~~---pgHt~gs~~~~~~~~~vlftGD~~~~~ 211 (242)
. .+..+. +.....+ ++...+.+.. ..|...-++++-+..+.|+..|++++-
T Consensus 101 ~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTDll~ni 162 (285)
T PF14234_consen 101 LSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTDLLFNI 162 (285)
T ss_pred hhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhhchhhC
Confidence 0 011111 1111222 2333333432 346677788888888999999999864
No 53
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=91.29 E-value=0.81 Score=38.83 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=54.4
Q ss_pred CCccEEEcCCCCCCccCChHHHH-HhcCCEEEeccccccCCCC-----ccEEecCCCEEEE--CCeEEEEEEcCC-CCC-
Q 026191 120 RNLTYILNTHHHHDHTGGNLELK-ARYGAKVIGSGVDKDRIPG-----IDIVLNDGDKWMF--AGHEVHVIDTPG-HTR- 189 (242)
Q Consensus 120 ~~i~~vilTH~H~DH~gg~~~l~-~~~~~~i~~~~~~~~~~~~-----~~~~~~~g~~~~~--g~~~i~~~~~pg-Ht~- 189 (242)
.++|-++.+|-|+||...-.... ...+.+++.-+..+..... -...+..+++.++ ++.++.+..+|. |+.
T Consensus 131 p~~d~~~vsh~h~dhld~~~~~~~~~~~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~ 210 (343)
T KOG3798|consen 131 PDLDFAVVSHDHYDHLDADAVKKITDRNPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTYTIWCLPAQHWGQ 210 (343)
T ss_pred CCCceeccccccccccchHHHHhhhccCccceeehhhhhheecCCCCCceeEeeccchhceecCCcEEEEEEcchhhhcc
Confidence 47999999999999986433221 1113445544443332211 1233444544433 666777777774 542
Q ss_pred -----------CCEEEEeCCCcEEEEccccccc
Q 026191 190 -----------GHISFYFPGSAAVFTGDTLFSL 211 (242)
Q Consensus 190 -----------gs~~~~~~~~~vlftGD~~~~~ 211 (242)
+|..+.-++.+++|.||+=|-.
T Consensus 211 R~L~D~Nk~LW~sw~v~g~~nrfffaGDTGyc~ 243 (343)
T KOG3798|consen 211 RGLFDRNKRLWSSWAVIGENNRFFFAGDTGYCD 243 (343)
T ss_pred cccccCCcceeeeeEEecCCceEEecCCCCccc
Confidence 3455555778999999997743
No 54
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=91.18 E-value=0.59 Score=30.91 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=30.8
Q ss_pred EEEEEECCCCeEEEE-cCCC-cHHHHHHHHcCCCCccEEEcCCCC-CCccCC
Q 026191 89 AYLLHDMDTGTVGVV-DPSE-AVPVIDALSRKNRNLTYILNTHHH-HDHTGG 137 (242)
Q Consensus 89 ~~lI~~~d~g~~~li-D~g~-~~~~~~~l~~~g~~i~~vilTH~H-~DH~gg 137 (242)
+.++..+ .+..|| ++++ .++....-+-+-.+++.||+|+.. +|++||
T Consensus 14 ~l~l~~d--~~rYlFGn~gEGtQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 14 SLLLFFD--SRRYLFGNCGEGTQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred EEEEEeC--CceEEeccCCcHHHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 5555553 357888 8884 333322211122589999999999 999997
No 55
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=85.06 E-value=1.1 Score=43.08 Aligned_cols=53 Identities=21% Similarity=0.128 Sum_probs=36.8
Q ss_pred EEEEEECCCCeEEEEcCCCc--HHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHh
Q 026191 89 AYLLHDMDTGTVGVVDPSEA--VPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKAR 144 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD~g~~--~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~ 144 (242)
+-|..- .|-.||+|.|.. .-++..++.. .+||.|++||.-.|..+|+..+.++
T Consensus 50 aALFav--nGf~iLv~GgserKS~fwklVrHl-drVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 50 AALFAV--NGFNILVNGGSERKSCFWKLVRHL-DRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred ceeEee--cceEEeecCCcccccchHHHHHHH-hhhhhhhhcccccCccccchHHHHH
Confidence 444433 366888888743 2255555443 5799999999999999999876443
No 56
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=69.68 E-value=15 Score=29.77 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=31.2
Q ss_pred EEcCCC-cHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcCC-EEEecc
Q 026191 102 VVDPSE-AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGA-KVIGSG 153 (242)
Q Consensus 102 liD~g~-~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~-~i~~~~ 153 (242)
+||+|+ --...+.|++.|.+=-+++.||+-+ .++.....+...+ +|+++.
T Consensus 92 iIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvf--s~~A~~~l~~s~Id~vvvTn 143 (184)
T PF14572_consen 92 IIDTGGTLIKAAELLKERGAKKVYACATHGVF--SGDAPERLEESPIDEVVVTN 143 (184)
T ss_dssp EESSTHHHHHHHHHHHHTTESEEEEEEEEE-----TTHHHHHHHSSESEEEEET
T ss_pred cccchHHHHHHHHHHHHcCCCEEEEEEeCccc--CchHHHHHhhcCCeEEEEec
Confidence 556773 3335567888994333899999998 6777666665555 666654
No 57
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.48 E-value=63 Score=28.54 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=34.1
Q ss_pred CeEEEEc----CC-CcHHHHHHHHcCC-CCccEEEcCCCCCCccCChHHHHHhcCC-EEEeccc
Q 026191 98 GTVGVVD----PS-EAVPVIDALSRKN-RNLTYILNTHHHHDHTGGNLELKARYGA-KVIGSGV 154 (242)
Q Consensus 98 g~~~liD----~g-~~~~~~~~l~~~g-~~i~~vilTH~H~DH~gg~~~l~~~~~~-~i~~~~~ 154 (242)
..+++|| +| .-....+.|++.| .+| +++.||+-+ .++........++ +|+++..
T Consensus 219 k~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V-~~~~tHgif--~~~a~~~l~~s~i~~iv~TdT 279 (323)
T PRK02458 219 KKAILIDDILNTGKTFAEAAKIVEREGATEI-YAVASHGLF--AGGAAEVLENAPIKEILVTDS 279 (323)
T ss_pred CEEEEEcceeCcHHHHHHHHHHHHhCCCCcE-EEEEEChhc--CchHHHHHhhCCCCEEEEECC
Confidence 3455555 56 3344567788888 455 789999988 6666554444455 6776543
No 58
>PRK13663 hypothetical protein; Provisional
Probab=41.29 E-value=1.1e+02 Score=28.11 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=50.4
Q ss_pred cHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHh---cCCEEEeccccccCCCCccEEecCC-----CEEEECCeEE
Q 026191 108 AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKAR---YGAKVIGSGVDKDRIPGIDIVLNDG-----DKWMFAGHEV 179 (242)
Q Consensus 108 ~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~---~~~~i~~~~~~~~~~~~~~~~~~~g-----~~~~~g~~~i 179 (242)
.-++++.++..|.-+..|++|... ---....|+++ .++++|.|........+....+++. +.++ -.+.+
T Consensus 94 VLRLiD~fr~~gl~V~sVVITqy~--~qp~a~~F~~rLe~~GIkvy~Hy~i~GYP~dv~~IVSdeGyGkN~yIe-TtrpL 170 (493)
T PRK13663 94 VLRLIDDFRELGLYVGSVVITQYD--GQPAADAFRNRLERLGIKVYRHYPIKGYPTDVDHIVSDEGYGKNDYIE-TTRPL 170 (493)
T ss_pred HHHHHHHHHhcCceeeeEEEEecC--CChHHHHHHHHHHHCCCceEEecCcCCCCCCCCceECcCCCCCCCcee-ccCCe
Confidence 444778888899899999999973 34444555443 4899999987766554444444431 2222 22346
Q ss_pred EEEEcCCCCCC
Q 026191 180 HVIDTPGHTRG 190 (242)
Q Consensus 180 ~~~~~pgHt~g 190 (242)
-++-.||-..|
T Consensus 171 VVVTAPGPGSG 181 (493)
T PRK13663 171 VVVTAPGPGSG 181 (493)
T ss_pred EEEeCCCCCcc
Confidence 67777774444
No 59
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=36.91 E-value=83 Score=27.74 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=33.9
Q ss_pred CCeEEEEc----CCC-cHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcCC-EEEeccc
Q 026191 97 TGTVGVVD----PSE-AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGA-KVIGSGV 154 (242)
Q Consensus 97 ~g~~~liD----~g~-~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~-~i~~~~~ 154 (242)
+..++++| +|. -....+.|++.|.+--+++.||+-+ .++...-...-++ +|+++..
T Consensus 217 Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvf--s~~a~~~l~~s~i~~iv~Tdt 278 (319)
T PRK04923 217 GKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVL--SGPAVDNINNSQLDELVVTDT 278 (319)
T ss_pred CCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECccc--CchHHHHHhhCCCCEEEEeCC
Confidence 34455555 553 3446677888885445799999988 5655332233345 6776543
No 60
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=34.80 E-value=79 Score=25.86 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=30.4
Q ss_pred CeEEEEc---CC-CcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHH
Q 026191 98 GTVGVVD---PS-EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLEL 141 (242)
Q Consensus 98 g~~~liD---~g-~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l 141 (242)
.++++.| || ++.++...|...|.++=.||+| +|.|---....+
T Consensus 49 pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT-GhgDIpmaV~Am 95 (202)
T COG4566 49 PGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT-GHGDIPMAVQAM 95 (202)
T ss_pred CCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEe-CCCChHHHHHHH
Confidence 3588889 45 6788999999999766667777 677754444433
No 61
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=32.85 E-value=16 Score=30.48 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=19.2
Q ss_pred CCCCCCccCChHHHHHhcCC-EEEecc
Q 026191 128 THHHHDHTGGNLELKARYGA-KVIGSG 153 (242)
Q Consensus 128 TH~H~DH~gg~~~l~~~~~~-~i~~~~ 153 (242)
-|+|.||+-++-.+....++ +||+|.
T Consensus 41 VHSh~~Hl~al~~~a~~~gv~~V~vH~ 67 (223)
T PF06415_consen 41 VHSHIDHLFALIKLAKKQGVKKVYVHA 67 (223)
T ss_dssp SS--HHHHHHHHHHHHHTT-SEEEEEE
T ss_pred ccccHHHHHHHHHHHHHcCCCEEEEEE
Confidence 39999999999998888787 588874
No 62
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=32.58 E-value=91 Score=29.44 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=39.9
Q ss_pred CCCeEEEEcCCCcHHHHHHHHcCC-CCccEEEcCCCCCCccCChHHHHHhcC--CEEEecccccc
Q 026191 96 DTGTVGVVDPSEAVPVIDALSRKN-RNLTYILNTHHHHDHTGGNLELKARYG--AKVIGSGVDKD 157 (242)
Q Consensus 96 d~g~~~liD~g~~~~~~~~l~~~g-~~i~~vilTH~H~DH~gg~~~l~~~~~--~~i~~~~~~~~ 157 (242)
+.++.+.+|....- .++..+-.. ..||.|++|..|. +-|++++-+..+ .+||+++.+.+
T Consensus 71 e~~~rvfvesppe~-~l~~t~lld~stiDvILISNy~~--mlgLPfiTentGF~gkiY~TE~t~q 132 (653)
T KOG1138|consen 71 ECCGRVFVESPPEF-TLPATHLLDASTIDVILISNYMG--MLGLPFITENTGFFGKIYATEPTAQ 132 (653)
T ss_pred HhCCceEEcCCchh-ccchhhhhcccceeEEEEcchhh--hcccceeecCCCceeEEEEechHHH
Confidence 34567888866322 122222222 4799999999988 899999987754 58999876653
No 63
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=32.56 E-value=1.2e+02 Score=27.03 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=34.4
Q ss_pred CCCeEEEEc----CC-CcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHh----cCC-EEEecc
Q 026191 96 DTGTVGVVD----PS-EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKAR----YGA-KVIGSG 153 (242)
Q Consensus 96 d~g~~~liD----~g-~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~----~~~-~i~~~~ 153 (242)
.++.+++|| +| .-....+.|++.|.+--+++.||+-+ .++...-.+. -++ +|+++.
T Consensus 217 ~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf--~~~a~~~l~~~~~~~~i~~iv~Tn 282 (332)
T PRK00553 217 KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLF--NKNAIQLFDEAFKKKLIDKLFVSN 282 (332)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeec--CchHHHHHHhccccCCCCEEEEeC
Confidence 344566666 45 33345677888886656899999988 5565443322 144 566654
No 64
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=30.93 E-value=1.2e+02 Score=26.83 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=38.0
Q ss_pred EEEEEECCCCeEEEEc----CCC-cHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcCC-EEEecc
Q 026191 89 AYLLHDMDTGTVGVVD----PSE-AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGA-KVIGSG 153 (242)
Q Consensus 89 ~~lI~~~d~g~~~liD----~g~-~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~-~i~~~~ 153 (242)
..++.+.+++.+++|| +|+ --...+.|+++|.+=-++..||+=+= |+.....+...+ +|+++.
T Consensus 206 ~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs--~~a~~~l~~~~i~~vivTn 274 (314)
T COG0462 206 MNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFS--GAALERLEASAIDEVIVTD 274 (314)
T ss_pred eecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhC--hHHHHHHhcCCCCEEEEeC
Confidence 3444454455566665 553 33355678889954348999998884 655555554334 566554
No 65
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=28.66 E-value=1.1e+02 Score=21.16 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEeCCCcEEEEcccccccccCCCCCCCHHHHHHHHHHhcCCCCCCccc
Q 026191 185 PGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQLIVYVTDVFFPSEDNVSA 241 (242)
Q Consensus 185 pgHt~gs~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~~~ 241 (242)
-||+.|-..+.+++ +|..-|..--..-+++..+.--+-+++|++.++.+.+.
T Consensus 26 vGh~~G~sSiiVPG-----sGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~ 77 (80)
T PF08149_consen 26 VGHSKGFSSIIVPG-----SGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMIT 77 (80)
T ss_pred eeccCceeEEeccC-----CCCCCCCcccCCcccchhHHhHHHHHHHHHhCCcccee
Confidence 48999988888886 56665544322223444444445577788888777653
No 66
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.28 E-value=2.1e+02 Score=25.13 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=31.1
Q ss_pred EEcCCC-cHHHHHHHHcCCCCccEEEcCCCCCCccCCh-HHHHHhcCC-EEEeccc
Q 026191 102 VVDPSE-AVPVIDALSRKNRNLTYILNTHHHHDHTGGN-LELKARYGA-KVIGSGV 154 (242)
Q Consensus 102 liD~g~-~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~-~~l~~~~~~-~i~~~~~ 154 (242)
++|+|. -....+.|++.|.+--+++.||+=+ .++. ..+.+ .++ +|+++..
T Consensus 226 IidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf--~~~a~~~l~~-~~i~~iv~Tdt 278 (320)
T PRK02269 226 MIDTAGTICHAADALAEAGATEVYASCTHPVL--SGPALDNIQK-SAIEKLVVLDT 278 (320)
T ss_pred ecCcHHHHHHHHHHHHHCCCCEEEEEEECccc--CchHHHHHHh-CCCCEEEEeCC
Confidence 344663 4446778888885444899999877 4554 44443 345 5666543
No 67
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=27.72 E-value=46 Score=31.86 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=27.7
Q ss_pred EEEEcCCCcHHHHHHHHcCC-CCccEEEcCCCCCCccC
Q 026191 100 VGVVDPSEAVPVIDALSRKN-RNLTYILNTHHHHDHTG 136 (242)
Q Consensus 100 ~~liD~g~~~~~~~~l~~~g-~~i~~vilTH~H~DH~g 136 (242)
.+|+|.|+..+=.++++... -.|+.|++-|.|+|-.-
T Consensus 421 ~VlvDnGsTeEDipA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 421 LVLVDNGSTEEDIPAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred EEEEcCCCcccccHHHHHHHhcCCCEEEEcCCCCcchh
Confidence 67889887666666666544 46888999999998654
No 68
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=27.11 E-value=49 Score=28.02 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=26.9
Q ss_pred CCeEEEEcC--------------CCcHHHHHHHHcCC--CCccEEE-cCCCCCCccC
Q 026191 97 TGTVGVVDP--------------SEAVPVIDALSRKN--RNLTYIL-NTHHHHDHTG 136 (242)
Q Consensus 97 ~g~~~liD~--------------g~~~~~~~~l~~~g--~~i~~vi-lTH~H~DH~g 136 (242)
.+..++||. |+..+.++.|.+.+ ..++.+| =||+++|+.-
T Consensus 189 ~~~PViFDaTHSvQ~pgg~g~~SGG~refv~~LaRAa~AvGvaGlF~EtHpdP~~A~ 245 (279)
T COG2877 189 FGAPVIFDATHSVQQPGGQGGSSGGRREFVPTLARAAVAVGVAGLFIETHPDPDNAK 245 (279)
T ss_pred cCCCeEEecccceeCCCCCCCCCCCcchhHHHHHHHHHHhccceEEEeccCCcccCC
Confidence 356788884 13555677776655 4677765 4999999874
No 69
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=25.11 E-value=1.2e+02 Score=24.34 Aligned_cols=79 Identities=11% Similarity=0.030 Sum_probs=43.0
Q ss_pred CCcHHHHHHHHcCC--CCccEEEcCCCCCCccCChHHHH-HhcCCEEEeccccccCCCCccEEecCCCEEEE-CCeEEEE
Q 026191 106 SEAVPVIDALSRKN--RNLTYILNTHHHHDHTGGNLELK-ARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMF-AGHEVHV 181 (242)
Q Consensus 106 g~~~~~~~~l~~~g--~~i~~vilTH~H~DH~gg~~~l~-~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~-g~~~i~~ 181 (242)
|+.+.+...|.... .+.-.|+.-|..+++...+..+. +....+|..........+........+..+.+ .+..+.+
T Consensus 9 GG~~al~~il~~lp~~~~~~ivivqH~~~~~~~~l~~~L~~~t~l~V~~a~~g~~l~~g~vYi~p~~~~l~i~~~~~~~l 88 (182)
T PF01339_consen 9 GGPEALQEILSALPADFPAAIVIVQHMPPGFTSSLAERLARHTSLPVREAEDGEPLEPGTVYIAPPGYHLTIEEDGRLRL 88 (182)
T ss_dssp THHHHHCCCHCCS-TTSSSEEEEEE---TTHHHHHHHHHHHHSSSEEEE--TT-B--TTEEEE--TTSEEEEECCEEEEE
T ss_pred CCHHHHHHHHHHhccCCCceEEEEECCCCCcchHHHHHHhCcCCCeEEEcCCCCEecCCEEEEeCCCceEEEEeCCEEEE
Confidence 33444444455544 35667889999999999886554 44466776554444333444455566777888 7777777
Q ss_pred EEc
Q 026191 182 IDT 184 (242)
Q Consensus 182 ~~~ 184 (242)
...
T Consensus 89 ~~~ 91 (182)
T PF01339_consen 89 RPD 91 (182)
T ss_dssp EE-
T ss_pred Eec
Confidence 763
No 70
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=25.07 E-value=1.4e+02 Score=26.06 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=31.8
Q ss_pred CeEEEEc----CC-CcHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcCC-EEEecc
Q 026191 98 GTVGVVD----PS-EAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGA-KVIGSG 153 (242)
Q Consensus 98 g~~~liD----~g-~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~-~i~~~~ 153 (242)
..+++|| +| .-....+.|++.|.+--+++.||+=+ .++...-....++ +|+++.
T Consensus 212 r~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvf--s~~a~~~l~~~~i~~iv~Td 271 (301)
T PRK07199 212 RTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALF--AGDAYSALAAAGIARVVSTD 271 (301)
T ss_pred CEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeC--ChHHHHHHHhCCCCEEEEeC
Confidence 3455555 66 34446678888996545789999865 3554333333345 566554
No 71
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=24.68 E-value=1.4e+02 Score=27.61 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=30.4
Q ss_pred EEcCCC-cHHHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhcCC-EEEeccc
Q 026191 102 VVDPSE-AVPVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARYGA-KVIGSGV 154 (242)
Q Consensus 102 liD~g~-~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~~~-~i~~~~~ 154 (242)
+||+|. -......|++.|.+--+++.||+-+ .++...-....++ +|+++..
T Consensus 344 IIdTG~Tl~~aa~~Lk~~GA~~V~~~~THglf--s~~A~~rl~~s~i~~IvvTdT 396 (439)
T PTZ00145 344 MIDTSGTLCEAAKQLKKHGARRVFAFATHGLF--SGPAIERIEASPLEEVVVTDT 396 (439)
T ss_pred eeCcHHHHHHHHHHHHHcCCCEEEEEEEcccC--ChhHHHHHhcCCCCEEEEeCC
Confidence 344563 3335677888884333899999988 4554433333355 6666543
No 72
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=24.08 E-value=1.8e+02 Score=25.53 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=33.5
Q ss_pred eEEEEEECCCCeEEEEc-----CCCcHHHHHHHHcCCCCccEEEcCCCCCCccCChHH
Q 026191 88 YAYLLHDMDTGTVGVVD-----PSEAVPVIDALSRKNRNLTYILNTHHHHDHTGGNLE 140 (242)
Q Consensus 88 ~~~lI~~~d~g~~~liD-----~g~~~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~ 140 (242)
...|+.|..+.-++++| +|.--.-.+.|...|.+=-+.+.||+=+ .|+.-.
T Consensus 205 ~m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVf--s~~a~e 260 (316)
T KOG1448|consen 205 RMVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVF--SGPAIE 260 (316)
T ss_pred EEEEEeccCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceec--cccHHH
Confidence 36777777667788888 3333334456777885444889999877 555433
No 73
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.20 E-value=2.5e+02 Score=25.07 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCCccEEEcCCCCCCccCChHHHHHhc---CCEEEeccccccCCCCccEEe
Q 026191 110 PVIDALSRKNRNLTYILNTHHHHDHTGGNLELKARY---GAKVIGSGVDKDRIPGIDIVL 166 (242)
Q Consensus 110 ~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l~~~~---~~~i~~~~~~~~~~~~~~~~~ 166 (242)
.+++.++..+..+..|++|....+ -....|+.+. ++++|.|..........++.+
T Consensus 96 RLID~frel~~~v~sVViTqyed~--p~a~aF~~rLEr~Gikvy~H~~ikGYPtD~~~Iv 153 (493)
T COG4868 96 RLIDKFRELDIKVGSVVITQYEDQ--PAADAFRTRLERNGIKVYLHYPIKGYPTDVDHIV 153 (493)
T ss_pred HHHHHHHhcCeeeeeEEEEecCCC--hhHHHHHHHHHhcCcceEEecccCCCCCchhhee
Confidence 356777778888889999998877 4445554443 789998876655443333333
No 74
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=23.01 E-value=5e+02 Score=24.66 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCCCccEEEcCCCCCCccCChHHH---HHhcCCEEEecc
Q 026191 109 VPVIDALSRKNRNLTYILNTHHHHDHTGGNLEL---KARYGAKVIGSG 153 (242)
Q Consensus 109 ~~~~~~l~~~g~~i~~vilTH~H~DH~gg~~~l---~~~~~~~i~~~~ 153 (242)
+..++.+... .+|+..+-...+|+ |...| .+..+.++++..
T Consensus 72 ~~~i~~~N~~--g~Da~~lGNHEFd~--G~~~l~~~~~~~~fp~l~aN 115 (550)
T TIGR01530 72 RADAALMNAA--GFDFFTLGNHEFDA--GNEGLKEFLEPLEIPVLSAN 115 (550)
T ss_pred HHHHHHHhcc--CCCEEEeccccccC--CHHHHHHHHHhCCCCEEEEe
Confidence 3344555544 48899999999997 44444 344456666654
No 75
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=21.73 E-value=1.1e+02 Score=19.42 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=14.6
Q ss_pred CCEEEEeCCCcEEEEccccc
Q 026191 190 GHISFYFPGSAAVFTGDTLF 209 (242)
Q Consensus 190 gs~~~~~~~~~vlftGD~~~ 209 (242)
+.+.|..++.+.+|.|+++-
T Consensus 33 ~~i~Y~~~dg~yli~G~l~d 52 (57)
T PF10411_consen 33 GGILYVDEDGRYLIQGQLYD 52 (57)
T ss_dssp TEEEEEETTSSEEEES-EEE
T ss_pred CeEEEEcCCCCEEEEeEEEe
Confidence 34677777889999999874
No 76
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=20.17 E-value=47 Score=17.44 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHhcCCCCCC
Q 026191 219 GTPGQLIVYVTDVFFPSEDN 238 (242)
Q Consensus 219 ~~~~~~~~sl~~l~~~~~~~ 238 (242)
++.+++.+.+++++...|++
T Consensus 14 g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTTS
T ss_pred cCHHHHHHHHHHHHHHCcCC
Confidence 57788899999998888874
Done!