Query 026192
Match_columns 242
No_of_seqs 260 out of 1227
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 07:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.7 1.8E-17 6.2E-22 126.2 11.3 78 2-79 16-97 (99)
2 4f25_A Polyadenylate-binding p 99.7 1.1E-16 3.8E-21 124.4 10.4 77 5-81 5-83 (115)
3 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.9E-16 6.6E-21 115.2 10.5 78 1-78 3-84 (85)
4 4a8x_A RNA-binding protein wit 99.7 2.7E-16 9.4E-21 114.8 10.9 77 4-80 3-84 (88)
5 3ucg_A Polyadenylate-binding p 99.7 2.9E-16 9.9E-21 115.1 10.9 76 5-80 6-84 (89)
6 2dgs_A DAZ-associated protein 99.7 4.4E-16 1.5E-20 116.9 11.6 78 4-81 9-89 (99)
7 2dgx_A KIAA0430 protein; RRM d 99.7 2.9E-16 9.8E-21 118.0 10.5 79 3-81 7-90 (96)
8 1x5s_A Cold-inducible RNA-bind 99.7 2.1E-16 7E-21 119.1 9.7 82 1-82 8-93 (102)
9 3s7r_A Heterogeneous nuclear r 99.7 4.2E-16 1.4E-20 114.2 11.0 75 4-78 10-87 (87)
10 2dnz_A Probable RNA-binding pr 99.7 5.5E-16 1.9E-20 115.1 11.7 80 3-82 3-86 (95)
11 1whw_A Hypothetical protein ri 99.7 5E-16 1.7E-20 116.4 11.4 79 4-82 7-89 (99)
12 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.1E-16 1.4E-20 117.5 10.4 81 1-81 8-92 (102)
13 1x4a_A Splicing factor, argini 99.7 6.4E-16 2.2E-20 118.1 11.5 78 4-81 21-99 (109)
14 1x5t_A Splicing factor 3B subu 99.7 5.8E-16 2E-20 115.2 10.9 79 3-81 3-86 (96)
15 2cq3_A RNA-binding protein 9; 99.7 1.2E-15 4.2E-20 115.2 12.9 79 4-82 14-94 (103)
16 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.6E-16 1.9E-20 113.2 10.5 78 3-80 4-85 (87)
17 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.2E-16 2.8E-20 116.2 11.7 76 5-80 15-92 (103)
18 3md1_A Nuclear and cytoplasmic 99.7 6.4E-16 2.2E-20 111.9 10.7 75 6-80 2-80 (83)
19 2lxi_A RNA-binding protein 10; 99.7 1.3E-16 4.5E-21 119.4 7.0 76 6-81 2-83 (91)
20 2cpf_A RNA binding motif prote 99.7 1E-15 3.5E-20 114.5 11.8 79 3-81 3-88 (98)
21 1s79_A Lupus LA protein; RRM, 99.7 1.7E-16 5.7E-21 122.1 7.4 76 5-80 11-88 (103)
22 3s8s_A Histone-lysine N-methyl 99.7 8.6E-16 2.9E-20 119.3 11.2 74 5-78 6-83 (110)
23 2e5g_A U6 snRNA-specific termi 99.6 1.1E-15 3.7E-20 114.0 11.3 76 4-81 7-82 (94)
24 1wi8_A EIF-4B, eukaryotic tran 99.6 1.1E-15 3.9E-20 115.8 11.5 77 4-81 14-94 (104)
25 2dgv_A HnRNP M, heterogeneous 99.6 5.9E-16 2E-20 114.3 9.5 80 3-82 6-87 (92)
26 3p5t_L Cleavage and polyadenyl 99.6 1.3E-16 4.6E-21 118.3 6.0 78 6-83 2-85 (90)
27 2dng_A Eukaryotic translation 99.6 1.8E-15 6.3E-20 114.4 12.5 77 4-81 14-93 (103)
28 2mss_A Protein (musashi1); RNA 99.6 2.3E-16 7.7E-21 112.6 7.0 71 7-77 1-74 (75)
29 2dnm_A SRP46 splicing factor; 99.6 7.9E-16 2.7E-20 116.3 10.1 78 4-81 12-93 (103)
30 2ywk_A Putative RNA-binding pr 99.6 7.8E-16 2.7E-20 114.3 9.6 75 5-79 16-93 (95)
31 2cq0_A Eukaryotic translation 99.6 2.1E-15 7E-20 114.0 11.6 78 4-81 14-95 (103)
32 2dh8_A DAZ-associated protein 99.6 8.1E-16 2.8E-20 116.6 9.1 79 4-82 15-96 (105)
33 1wez_A HnRNP H', FTP-3, hetero 99.6 9.8E-16 3.3E-20 117.2 9.6 77 4-81 14-92 (102)
34 2dgo_A Cytotoxic granule-assoc 99.6 5.8E-15 2E-19 113.6 13.8 81 4-84 14-98 (115)
35 2e5h_A Zinc finger CCHC-type a 99.6 1.6E-15 5.3E-20 112.5 10.1 76 3-78 14-93 (94)
36 2d9p_A Polyadenylate-binding p 99.6 1.8E-15 6.3E-20 114.2 10.6 79 4-82 14-94 (103)
37 2rs2_A Musashi-1, RNA-binding 99.6 1.9E-15 6.5E-20 116.4 10.9 78 3-80 23-103 (109)
38 3lqv_A PRE-mRNA branch site pr 99.6 1.1E-15 3.7E-20 117.7 9.5 76 4-79 7-83 (115)
39 1x4b_A Heterogeneous nuclear r 99.6 3E-15 1E-19 115.5 12.0 77 6-82 28-107 (116)
40 2dnn_A RNA-binding protein 12; 99.6 8.5E-16 2.9E-20 119.7 8.9 74 5-79 16-91 (109)
41 2cpz_A CUG triplet repeat RNA- 99.6 2.5E-15 8.7E-20 115.8 11.3 78 4-81 24-105 (115)
42 2x1f_A MRNA 3'-END-processing 99.6 2.1E-15 7.1E-20 112.7 10.4 76 5-80 2-81 (96)
43 1p27_B RNA-binding protein 8A; 99.6 1.2E-15 4E-20 115.7 9.1 77 4-80 22-102 (106)
44 1wg5_A Heterogeneous nuclear r 99.6 1.9E-15 6.5E-20 115.2 10.3 77 4-80 14-93 (104)
45 2cqc_A Arginine/serine-rich sp 99.6 1.6E-15 5.4E-20 112.5 9.5 75 5-79 15-93 (95)
46 2dnq_A RNA-binding protein 4B; 99.6 3.6E-15 1.2E-19 110.2 11.2 75 3-82 6-81 (90)
47 2dgt_A RNA-binding protein 30; 99.6 4.4E-15 1.5E-19 110.1 11.7 73 4-81 9-82 (92)
48 2dgw_A Probable RNA-binding pr 99.6 3.5E-15 1.2E-19 110.3 11.0 77 4-81 9-87 (91)
49 2cq4_A RNA binding motif prote 99.6 1.8E-15 6E-20 116.5 9.7 74 6-79 26-102 (114)
50 2err_A Ataxin-2-binding protei 99.6 2.3E-15 7.8E-20 115.8 10.3 77 4-80 28-106 (109)
51 2db1_A Heterogeneous nuclear r 99.6 1.5E-15 5.1E-20 118.8 9.3 75 5-79 17-96 (118)
52 2jwn_A Embryonic polyadenylate 99.6 3.2E-15 1.1E-19 116.5 11.0 76 5-80 36-114 (124)
53 2jrs_A RNA-binding protein 39; 99.6 2.6E-15 8.9E-20 115.6 10.3 78 3-80 24-105 (108)
54 1oo0_B CG8781-PA, drosophila Y 99.6 2.4E-15 8.1E-20 114.9 9.9 77 4-80 25-105 (110)
55 2do4_A Squamous cell carcinoma 99.6 3.4E-15 1.1E-19 112.2 10.5 77 4-80 16-95 (100)
56 1iqt_A AUF1, heterogeneous nuc 99.6 3.9E-16 1.3E-20 111.1 5.1 71 7-77 1-74 (75)
57 1x4c_A Splicing factor, argini 99.6 4E-15 1.4E-19 114.0 11.1 74 4-81 14-93 (108)
58 2dnp_A RNA-binding protein 14; 99.6 2.8E-15 9.5E-20 110.8 9.9 74 3-81 7-81 (90)
59 1x5u_A Splicing factor 3B subu 99.6 4E-15 1.4E-19 112.6 10.8 78 4-81 14-95 (105)
60 2do0_A HnRNP M, heterogeneous 99.6 9.4E-15 3.2E-19 112.0 13.0 76 5-80 15-93 (114)
61 1x4g_A Nucleolysin TIAR; struc 99.6 3.7E-15 1.3E-19 114.0 10.7 75 4-81 24-99 (109)
62 2fy1_A RNA-binding motif prote 99.6 5.7E-15 1.9E-19 115.1 11.9 79 5-83 7-88 (116)
63 2cph_A RNA binding motif prote 99.6 3.8E-15 1.3E-19 112.8 10.5 78 4-81 14-97 (107)
64 2jvr_A Nucleolar protein 3; RN 99.6 1.9E-15 6.6E-20 118.2 8.9 76 4-80 27-104 (111)
65 2cpj_A Non-POU domain-containi 99.6 4.7E-15 1.6E-19 111.4 10.7 75 3-80 13-88 (99)
66 2lkz_A RNA-binding protein 5; 99.6 1.6E-15 5.6E-20 115.2 8.2 75 6-80 10-94 (95)
67 3ulh_A THO complex subunit 4; 99.6 4.5E-15 1.5E-19 112.6 10.6 76 4-79 28-106 (107)
68 1sjq_A Polypyrimidine tract-bi 99.6 2.1E-15 7.4E-20 117.4 8.9 74 4-80 15-91 (105)
69 2div_A TRNA selenocysteine ass 99.6 3.9E-15 1.3E-19 111.5 10.1 77 4-80 8-93 (99)
70 2cpy_A RNA-binding protein 12; 99.6 2.4E-15 8.2E-20 116.4 9.2 77 4-80 14-93 (114)
71 2cqg_A TDP-43, TAR DNA-binding 99.6 7E-15 2.4E-19 111.0 11.4 77 5-82 15-94 (103)
72 1x4h_A RNA-binding protein 28; 99.6 5.4E-15 1.8E-19 112.7 10.8 76 5-80 15-100 (111)
73 2kt5_A RNA and export factor-b 99.6 7.5E-15 2.6E-19 114.7 11.8 79 5-83 35-116 (124)
74 2ki2_A SS-DNA binding protein 99.6 4.3E-16 1.5E-20 114.8 4.3 76 6-82 2-81 (90)
75 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.1E-15 3.8E-20 115.6 6.6 76 4-80 18-97 (100)
76 2dgp_A Bruno-like 4, RNA bindi 99.6 4.2E-15 1.4E-19 112.6 9.7 78 3-80 11-95 (106)
77 2cqp_A RNA-binding protein 12; 99.6 2.6E-15 8.8E-20 112.3 8.2 77 4-80 14-94 (98)
78 2dnh_A Bruno-like 5, RNA bindi 99.6 5.8E-15 2E-19 111.7 10.3 78 4-81 14-97 (105)
79 2khc_A Testis-specific RNP-typ 99.6 4.3E-15 1.5E-19 114.8 9.6 75 4-78 39-117 (118)
80 2la6_A RNA-binding protein FUS 99.6 5.9E-15 2E-19 110.9 10.0 75 4-78 12-98 (99)
81 2cqd_A RNA-binding region cont 99.6 1.1E-14 3.9E-19 112.3 11.9 77 4-81 16-96 (116)
82 2cpi_A CCR4-NOT transcription 99.6 3.5E-15 1.2E-19 115.0 8.9 77 5-81 15-101 (111)
83 2ek1_A RNA-binding protein 12; 99.6 3.2E-15 1.1E-19 111.0 8.3 76 4-79 14-93 (95)
84 2krb_A Eukaryotic translation 99.6 1.4E-15 4.8E-20 110.5 6.2 70 6-75 2-80 (81)
85 2ytc_A PRE-mRNA-splicing facto 99.6 5.7E-15 1.9E-19 107.5 9.4 72 4-78 11-84 (85)
86 3ns6_A Eukaryotic translation 99.6 1.6E-15 5.3E-20 115.1 6.5 75 5-79 6-91 (100)
87 2cpe_A RNA-binding protein EWS 99.6 8.6E-15 3E-19 112.3 10.8 78 4-81 14-103 (113)
88 1why_A Hypothetical protein ri 99.6 6.4E-15 2.2E-19 110.3 9.8 73 5-80 17-92 (97)
89 1nu4_A U1A RNA binding domain; 99.6 3.1E-15 1.1E-19 111.5 8.0 77 4-80 7-88 (97)
90 2wbr_A GW182, gawky, LD47780P; 99.6 4.1E-15 1.4E-19 112.8 8.5 74 2-78 4-78 (89)
91 2cq1_A PTB-like protein L; RRM 99.6 1.6E-14 5.4E-19 111.0 11.9 73 5-80 15-90 (101)
92 2hvz_A Splicing factor, argini 99.6 3.6E-15 1.2E-19 112.3 8.0 75 6-82 1-76 (101)
93 1x4d_A Matrin 3; structural ge 99.6 4.2E-15 1.4E-19 114.8 8.4 76 4-82 14-93 (102)
94 2cpd_A Apobec-1 stimulating pr 99.6 2.1E-14 7.1E-19 107.8 12.0 73 4-81 14-89 (99)
95 2hgl_A HNRPF protein, heteroge 99.6 3.5E-15 1.2E-19 120.6 8.2 75 4-78 43-122 (136)
96 2hzc_A Splicing factor U2AF 65 99.6 7E-15 2.4E-19 107.3 8.9 70 5-77 6-86 (87)
97 2lmi_A GRSF-1, G-rich sequence 99.6 1.7E-15 5.9E-20 116.0 5.9 76 4-79 10-90 (107)
98 2dgu_A Heterogeneous nuclear r 99.6 1.1E-14 3.7E-19 110.3 10.2 74 5-83 11-85 (103)
99 2nlw_A Eukaryotic translation 99.6 4.3E-15 1.5E-19 113.4 8.0 77 5-81 15-100 (105)
100 1p1t_A Cleavage stimulation fa 99.6 5.5E-15 1.9E-19 111.4 8.5 75 5-79 8-86 (104)
101 1x4e_A RNA binding motif, sing 99.6 1.4E-15 4.9E-20 110.9 5.0 75 3-77 3-81 (85)
102 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.8E-14 6.3E-19 116.7 12.0 80 4-83 38-121 (156)
103 1wel_A RNA-binding protein 12; 99.6 2.4E-15 8.2E-20 117.9 6.4 76 4-79 24-102 (124)
104 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.2E-15 1.1E-19 106.7 6.6 72 6-78 1-76 (77)
105 2la4_A Nuclear and cytoplasmic 99.6 7.6E-15 2.6E-19 110.5 8.9 73 4-79 26-99 (101)
106 2ad9_A Polypyrimidine tract-bi 99.6 1.2E-14 4E-19 115.5 10.3 74 5-81 31-107 (119)
107 2fc9_A NCL protein; structure 99.6 1.2E-14 4.1E-19 109.3 9.8 76 3-81 13-91 (101)
108 2dhg_A TRNA selenocysteine ass 99.6 8.3E-15 2.8E-19 110.6 8.9 78 4-81 8-90 (104)
109 2jvo_A Nucleolar protein 3; nu 99.6 1.4E-14 4.9E-19 111.6 10.4 72 4-80 30-102 (108)
110 3ex7_B RNA-binding protein 8A; 99.6 8.2E-15 2.8E-19 114.4 9.1 79 3-81 20-102 (126)
111 2e44_A Insulin-like growth fac 99.6 4.9E-15 1.7E-19 110.3 7.4 76 5-81 15-92 (96)
112 1wf1_A RNA-binding protein RAL 99.6 1.4E-14 4.8E-19 110.9 10.2 71 5-80 27-99 (110)
113 2kvi_A Nuclear polyadenylated 99.6 8.8E-15 3E-19 109.6 8.8 73 4-81 9-83 (96)
114 2xnq_A Nuclear polyadenylated 99.6 2.2E-14 7.4E-19 108.3 10.9 72 3-79 20-93 (97)
115 1u6f_A Tcubp1, RNA-binding pro 99.6 2E-14 6.8E-19 114.1 11.0 79 5-83 42-124 (139)
116 3n9u_C Cleavage and polyadenyl 99.6 1.5E-14 5E-19 119.0 10.4 75 5-79 55-135 (156)
117 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.3E-14 4.5E-19 114.5 9.5 74 4-77 62-139 (140)
118 2e5j_A Methenyltetrahydrofolat 99.6 1.2E-14 4E-19 109.0 8.7 74 5-80 19-93 (97)
119 2kn4_A Immunoglobulin G-bindin 99.6 1.5E-14 5.2E-19 116.9 9.9 77 5-81 70-150 (158)
120 2dis_A Unnamed protein product 99.6 1.4E-14 4.9E-19 110.2 9.2 81 3-83 6-94 (109)
121 1whx_A Hypothetical protein ri 99.6 1.4E-14 4.7E-19 112.1 9.1 73 5-80 10-83 (111)
122 1wex_A Hypothetical protein (r 99.5 2.2E-14 7.4E-19 110.7 10.1 74 5-81 15-91 (104)
123 2kxn_B Transformer-2 protein h 99.5 9.9E-15 3.4E-19 116.1 8.3 77 4-80 45-125 (129)
124 2cqh_A IGF-II mRNA-binding pro 99.5 2.3E-14 8E-19 106.2 9.5 74 4-81 7-83 (93)
125 1fjc_A Nucleolin RBD2, protein 99.5 1.1E-14 3.9E-19 108.3 7.8 74 5-80 16-90 (96)
126 2a3j_A U1 small nuclear ribonu 99.5 1.6E-14 5.5E-19 115.3 9.0 76 5-80 29-109 (127)
127 2dha_A FLJ20171 protein; RRM d 99.5 7.3E-15 2.5E-19 116.8 6.6 76 4-79 22-103 (123)
128 2i2y_A Fusion protein consists 99.5 1.2E-14 4.1E-19 117.1 8.0 74 4-79 72-146 (150)
129 2hgn_A Heterogeneous nuclear r 99.5 4.2E-15 1.4E-19 120.6 5.3 77 4-81 45-123 (139)
130 3md3_A Nuclear and cytoplasmic 99.5 2.8E-14 9.5E-19 113.7 9.9 77 6-82 1-80 (166)
131 2xs2_A Deleted in azoospermia- 99.5 1.7E-14 5.8E-19 108.7 8.0 75 5-80 9-85 (102)
132 3r27_A HnRNP L, heterogeneous 99.5 3.6E-14 1.2E-18 109.5 10.0 72 5-79 21-95 (100)
133 3d2w_A TAR DNA-binding protein 99.5 3.3E-14 1.1E-18 105.9 9.4 70 5-79 11-82 (89)
134 1wf0_A TDP-43, TAR DNA-binding 99.5 2.5E-14 8.5E-19 105.2 8.6 74 4-80 4-77 (88)
135 2hgm_A HNRPF protein, heteroge 99.5 1.4E-14 4.8E-19 115.9 7.7 74 5-79 42-119 (126)
136 1wg1_A KIAA1579 protein, homol 99.5 4.9E-14 1.7E-18 103.9 10.0 74 3-80 3-77 (88)
137 1fj7_A Nucleolin RBD1, protein 99.5 5E-15 1.7E-19 111.5 4.5 76 4-80 16-94 (101)
138 1fxl_A Paraneoplastic encephal 99.5 6.4E-14 2.2E-18 111.7 11.2 76 5-80 2-81 (167)
139 3beg_B Splicing factor, argini 99.5 1.2E-14 4.1E-19 112.9 6.4 73 4-80 15-93 (115)
140 2cpx_A Hypothetical protein FL 99.5 4.6E-14 1.6E-18 108.3 9.4 77 4-81 24-105 (115)
141 1x5o_A RNA binding motif, sing 99.5 6.8E-14 2.3E-18 107.4 9.9 76 4-79 24-110 (114)
142 1rk8_A CG8781-PA, CG8781-PA pr 99.5 7E-14 2.4E-18 114.7 10.6 77 4-80 71-151 (165)
143 2lea_A Serine/arginine-rich sp 99.5 2E-14 6.9E-19 115.0 6.9 77 5-81 47-127 (135)
144 1l3k_A Heterogeneous nuclear r 99.5 8.5E-14 2.9E-18 114.4 10.7 77 5-81 13-92 (196)
145 1b7f_A Protein (SXL-lethal pro 99.5 1.1E-13 3.6E-18 110.9 10.8 76 5-80 3-82 (168)
146 2m2b_A RNA-binding protein 10; 99.5 1.6E-14 5.3E-19 114.4 5.0 75 5-80 23-107 (131)
147 3egn_A RNA-binding protein 40; 99.5 7.1E-14 2.4E-18 111.7 8.9 76 5-80 45-129 (143)
148 1x4f_A Matrin 3; structural ge 99.5 8.1E-14 2.8E-18 109.5 8.9 74 5-81 25-102 (112)
149 2voo_A Lupus LA protein; RNA-b 99.5 1.5E-13 5.2E-18 116.3 11.1 77 6-82 110-188 (193)
150 2fc8_A NCL protein; structure 99.5 1.2E-13 4.2E-18 103.8 9.4 75 4-81 14-92 (102)
151 4f02_A Polyadenylate-binding p 99.5 1.4E-13 4.7E-18 116.7 10.8 75 6-80 16-94 (213)
152 2f3j_A RNA and export factor b 99.5 7.8E-14 2.7E-18 116.7 9.2 77 5-81 88-167 (177)
153 3q2s_C Cleavage and polyadenyl 99.5 8.6E-14 2.9E-18 120.9 9.6 75 5-79 68-148 (229)
154 1x5p_A Negative elongation fac 99.5 3.6E-13 1.2E-17 100.8 11.6 72 4-80 14-86 (97)
155 1l3k_A Heterogeneous nuclear r 99.5 2.1E-13 7.3E-18 112.0 11.2 77 5-81 104-183 (196)
156 2dnl_A Cytoplasmic polyadenyla 99.5 1.5E-13 5.3E-18 106.2 9.6 74 4-78 7-98 (114)
157 2lcw_A RNA-binding protein FUS 99.2 3.2E-15 1.1E-19 115.5 0.0 81 2-82 4-96 (116)
158 4f02_A Polyadenylate-binding p 99.5 1.4E-13 4.9E-18 116.6 10.1 76 5-80 103-180 (213)
159 2qfj_A FBP-interacting repress 99.5 2.1E-13 7.3E-18 113.6 11.0 79 5-83 125-207 (216)
160 2cjk_A Nuclear polyadenylated 99.5 6.2E-14 2.1E-18 112.4 7.4 75 5-79 87-164 (167)
161 3md3_A Nuclear and cytoplasmic 99.5 2.6E-13 8.8E-18 108.0 10.8 76 4-79 86-165 (166)
162 3tyt_A Heterogeneous nuclear r 99.5 2.9E-13 9.8E-18 115.4 11.1 75 4-80 3-79 (205)
163 3nmr_A Cugbp ELAV-like family 99.4 2.2E-13 7.7E-18 109.5 9.0 77 4-80 2-87 (175)
164 2qfj_A FBP-interacting repress 99.4 2.4E-13 8.1E-18 113.4 9.2 74 6-79 29-106 (216)
165 2g4b_A Splicing factor U2AF 65 99.4 3.6E-13 1.2E-17 108.5 9.8 74 5-78 94-171 (172)
166 1qm9_A Polypyrimidine tract-bi 99.4 2E-13 6.7E-18 113.2 8.2 75 5-81 3-79 (198)
167 1sjr_A Polypyrimidine tract-bi 99.4 3.3E-13 1.1E-17 112.8 9.4 75 6-81 47-124 (164)
168 3zzy_A Polypyrimidine tract-bi 99.4 7.8E-13 2.7E-17 106.6 11.2 73 6-80 29-105 (130)
169 2g4b_A Splicing factor U2AF 65 99.4 5.4E-13 1.8E-17 107.4 10.2 76 4-82 3-89 (172)
170 2cq2_A Hypothetical protein LO 99.4 2.5E-13 8.4E-18 107.2 7.5 74 5-81 25-106 (114)
171 2cjk_A Nuclear polyadenylated 99.4 3.7E-13 1.3E-17 107.9 8.5 74 5-79 3-79 (167)
172 2e5i_A Heterogeneous nuclear r 99.4 1E-12 3.6E-17 104.8 10.6 73 6-81 26-102 (124)
173 2yh0_A Splicing factor U2AF 65 99.4 1.1E-12 3.7E-17 108.0 11.0 77 4-80 113-193 (198)
174 3pgw_A U1-A; protein-RNA compl 99.4 8.2E-13 2.8E-17 115.4 10.7 77 5-81 9-90 (282)
175 2adc_A Polypyrimidine tract-bi 99.4 5.1E-13 1.7E-17 114.4 9.1 76 4-81 33-110 (229)
176 2diu_A KIAA0430 protein; struc 99.4 9.3E-13 3.2E-17 101.0 9.5 73 4-83 8-86 (96)
177 2ghp_A U4/U6 snRNA-associated 99.4 5.9E-13 2E-17 116.8 9.5 76 4-79 40-116 (292)
178 2yh0_A Splicing factor U2AF 65 99.4 9.7E-13 3.3E-17 108.2 9.8 77 4-83 3-90 (198)
179 1fje_B Nucleolin RBD12, protei 99.4 8.3E-13 2.8E-17 107.0 9.2 74 5-80 99-173 (175)
180 2j8a_A Histone-lysine N-methyl 99.4 1.1E-12 3.7E-17 106.2 8.9 72 6-77 3-92 (136)
181 3pgw_S U1-70K; protein-RNA com 99.4 1.3E-12 4.5E-17 123.6 10.4 75 6-80 103-181 (437)
182 3nmr_A Cugbp ELAV-like family 99.4 1.3E-12 4.5E-17 105.0 8.9 74 5-78 95-174 (175)
183 3sde_A Paraspeckle component 1 99.4 1.6E-12 5.4E-17 113.6 9.8 74 4-80 21-95 (261)
184 2bz2_A Negative elongation fac 99.4 2.1E-12 7.2E-17 101.6 9.6 72 4-80 38-110 (121)
185 1b7f_A Protein (SXL-lethal pro 99.4 2.3E-12 7.8E-17 103.1 9.9 74 4-77 88-167 (168)
186 2ghp_A U4/U6 snRNA-associated 99.4 1.4E-12 4.9E-17 114.4 9.4 77 4-80 209-290 (292)
187 1fje_B Nucleolin RBD12, protei 99.3 9.9E-13 3.4E-17 106.6 5.8 78 4-81 12-91 (175)
188 1fxl_A Paraneoplastic encephal 99.3 3.8E-12 1.3E-16 101.3 9.0 72 5-76 88-165 (167)
189 3pgw_A U1-A; protein-RNA compl 99.3 4.8E-12 1.7E-16 110.5 10.4 72 5-78 207-280 (282)
190 2dit_A HIV TAT specific factor 99.3 8.8E-12 3E-16 96.1 10.7 75 5-80 15-101 (112)
191 3smz_A Protein raver-1, ribonu 99.3 8.3E-12 2.8E-16 109.1 11.8 80 3-82 93-176 (284)
192 2pe8_A Splicing factor 45; RRM 99.3 7.1E-12 2.4E-16 96.6 10.1 76 4-79 7-92 (105)
193 3u1l_A PRE-mRNA-splicing facto 99.3 2.6E-12 9E-17 113.2 7.9 75 4-81 133-229 (240)
194 1qm9_A Polypyrimidine tract-bi 99.3 4.9E-12 1.7E-16 104.8 8.6 73 5-79 120-195 (198)
195 3smz_A Protein raver-1, ribonu 99.3 1.1E-11 3.6E-16 108.4 10.7 75 5-79 184-262 (284)
196 2adc_A Polypyrimidine tract-bi 99.3 1.6E-11 5.5E-16 105.0 10.0 73 5-79 151-226 (229)
197 3tyt_A Heterogeneous nuclear r 99.2 1.2E-11 4.1E-16 105.3 7.7 67 5-71 123-193 (205)
198 3sde_A Paraspeckle component 1 99.2 5.2E-11 1.8E-15 103.8 9.0 78 4-81 95-179 (261)
199 1jmt_A Splicing factor U2AF 35 99.1 1.1E-11 3.8E-16 95.2 2.5 69 10-78 20-103 (104)
200 2d9o_A DNAJ (HSP40) homolog, s 99.1 6.5E-10 2.2E-14 85.2 11.6 73 5-80 10-89 (100)
201 3v4m_A Splicing factor U2AF 65 99.1 1.6E-10 5.6E-15 88.9 7.9 74 6-79 6-95 (105)
202 3ue2_A Poly(U)-binding-splicin 99.1 5.9E-10 2E-14 87.8 8.9 75 5-79 20-107 (118)
203 1owx_A Lupus LA protein, SS-B, 99.0 6.6E-10 2.3E-14 88.5 8.6 73 3-78 16-93 (121)
204 3tht_A Alkylated DNA repair pr 99.0 9E-10 3.1E-14 101.6 8.0 71 5-78 18-96 (345)
205 2dnr_A Synaptojanin-1; RRM dom 99.0 2.8E-09 9.6E-14 80.9 8.8 74 1-79 3-84 (91)
206 3s6e_A RNA-binding protein 39; 99.0 3.4E-09 1.2E-13 83.0 9.5 73 6-79 8-91 (114)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 1.9E-08 6.4E-13 76.9 6.9 73 1-78 11-92 (95)
208 3dxb_A Thioredoxin N-terminall 98.3 1.5E-06 5.1E-11 73.6 7.1 63 17-79 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.2 3.8E-06 1.3E-10 65.9 8.3 71 5-78 21-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.1 2.5E-05 8.6E-10 60.4 10.3 73 3-80 6-83 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.8 0.00014 4.7E-09 57.6 9.5 71 5-79 24-95 (119)
212 1wey_A Calcipressin 1; structu 97.5 0.00094 3.2E-08 51.6 9.9 74 3-79 3-82 (104)
213 3p3d_A Nucleoporin 53; structu 97.4 0.00017 5.9E-09 57.9 4.9 77 3-80 5-98 (132)
214 1uw4_A UPF3X; nonsense mediate 96.9 0.0055 1.9E-07 46.0 8.4 66 6-71 2-73 (91)
215 3pq1_A Poly(A) RNA polymerase; 95.9 0.0042 1.4E-07 59.3 3.5 57 5-64 53-109 (464)
216 1whv_A Poly(A)-specific ribonu 95.8 0.023 8E-07 43.4 6.7 66 6-81 17-83 (100)
217 3ctr_A Poly(A)-specific ribonu 95.2 0.03 1E-06 42.8 5.3 51 6-62 7-57 (101)
218 2l08_A Regulator of nonsense t 94.4 0.049 1.7E-06 41.4 4.6 66 6-71 10-81 (97)
219 3d45_A Poly(A)-specific ribonu 81.0 3.5 0.00012 39.3 7.4 51 5-61 440-490 (507)
220 2kn4_A Immunoglobulin G-bindin 79.4 1.4 4.9E-05 34.1 3.4 33 34-66 2-36 (158)
221 2i2y_A Fusion protein consists 66.0 3.3 0.00011 32.0 2.5 36 44-80 13-50 (150)
222 4e8u_A Putative uncharacterize 40.7 46 0.0016 27.4 5.5 59 6-64 13-83 (172)
223 1smz_A Transportan in bicellar 33.1 16 0.00055 20.9 1.0 22 126-147 4-25 (27)
224 1yx3_A Hypothetical protein DS 23.0 1.4E+02 0.0047 23.5 5.2 45 123-167 50-99 (132)
225 3j21_T 50S ribosomal protein L 22.5 1.3E+02 0.0045 21.7 4.7 51 8-58 25-77 (86)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=126.22 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=70.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026192 2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR 77 (242)
Q Consensus 2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~ 77 (242)
+..+++|||+|||+++||++|+++|+.||+|.+|++.++.. ..++|||+|.++++|+.|+ .|||..|+|++|.|..
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568999999999999999999999999999999998754 2369999999999999995 7999999999999987
Q ss_pred cC
Q 026192 78 WG 79 (242)
Q Consensus 78 a~ 79 (242)
+.
T Consensus 96 Ak 97 (99)
T 4fxv_A 96 AR 97 (99)
T ss_dssp CC
T ss_pred ee
Confidence 64
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=1.1e-16 Score=124.35 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=70.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc-CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC-GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~-~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
..+|||+|||+.+||++|+++|+.||.|.+|+|+++.+. .+||||+|.++++|+.|+ .|||..|.|+.|.|..+.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 468999999999999999999999999999999987653 469999999999999995 79999999999999987543
No 3
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.9e-16 Score=115.15 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=70.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEE
Q 026192 1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCII 76 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~ 76 (242)
|.+..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|+|++|.|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456678999999999999999999999999999999987643 3479999999999999996 899999999999998
Q ss_pred ec
Q 026192 77 RW 78 (242)
Q Consensus 77 ~a 78 (242)
.+
T Consensus 83 ~a 84 (85)
T 3mdf_A 83 LA 84 (85)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 4
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=2.7e-16 Score=114.84 Aligned_cols=77 Identities=25% Similarity=0.270 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC----cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE----CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~----~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
..++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 457999999999999999999999999999999987753 4579999999999999996 59999999999999987
Q ss_pred CC
Q 026192 79 GE 80 (242)
Q Consensus 79 ~~ 80 (242)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 5
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=2.9e-16 Score=115.14 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+.|||..|.|+.|.|..+.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 47999999999999999999999999999999997643 34699999999999999999999999999999998753
No 6
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.4e-16 Score=116.87 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ..++|||+|.++++|+.|+.|||..|.|+.|.|..+.+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 347999999999999999999999999999999997643 35799999999999999988999999999999998754
Q ss_pred C
Q 026192 81 Y 81 (242)
Q Consensus 81 ~ 81 (242)
.
T Consensus 89 ~ 89 (99)
T 2dgs_A 89 R 89 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 7
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=118.00 Aligned_cols=79 Identities=19% Similarity=0.148 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHH----HHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026192 3 AGGYVAEVVGLSPNATEKDIH----EFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR 77 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLr----efFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~ 77 (242)
+..++|||+|||+.+++++|+ ++|+.||+|.+|.|+.+....++|||+|.++++|+.|+ .|||..|+|+.|.|..
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345799999999999999999 99999999999999977555679999999999999995 6999999999999998
Q ss_pred cCCC
Q 026192 78 WGEY 81 (242)
Q Consensus 78 a~~~ 81 (242)
+.+.
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7543
No 8
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=119.14 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=73.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEE
Q 026192 1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCII 76 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~ 76 (242)
|.+..++|||+|||+.+++++|+++|+.||+|.+|.|+.+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456678999999999999999999999999999999997643 3469999999999999996 999999999999999
Q ss_pred ecCCCC
Q 026192 77 RWGEYT 82 (242)
Q Consensus 77 ~a~~~~ 82 (242)
.+.+..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 876543
No 9
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=4.2e-16 Score=114.21 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=68.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a 78 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.++.+.. ..++|||+|.++++|+.|+.++|..|.|+.|.|..+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 457999999999999999999999999999999997743 246999999999999999988999999999999753
No 10
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.5e-16 Score=115.15 Aligned_cols=80 Identities=21% Similarity=0.310 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
+..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4568999999999999999999999999999999998743 3469999999999999996 59999999999999987
Q ss_pred CCCC
Q 026192 79 GEYT 82 (242)
Q Consensus 79 ~~~~ 82 (242)
.+..
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6543
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=5e-16 Score=116.39 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 458999999999999999999999999999999997642 3479999999999999996 999999999999999876
Q ss_pred CCC
Q 026192 80 EYT 82 (242)
Q Consensus 80 ~~~ 82 (242)
+..
T Consensus 87 ~~~ 89 (99)
T 1whw_A 87 IKK 89 (99)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 12
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=117.48 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEE
Q 026192 1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCII 76 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~ 76 (242)
|.+..++|||+|||+.+++++|+++|+.||+|.+|.|+.+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 455668999999999999999999999999999999987633 3579999999999999996 799999999999999
Q ss_pred ecCCC
Q 026192 77 RWGEY 81 (242)
Q Consensus 77 ~a~~~ 81 (242)
.+.+.
T Consensus 88 ~a~~~ 92 (102)
T 2cqb_A 88 LAKPM 92 (102)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 77543
No 13
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.4e-16 Score=118.10 Aligned_cols=78 Identities=19% Similarity=0.146 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..++...++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 3479999999999999999999999999999999877666689999999999999996 99999999999999976543
No 14
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.8e-16 Score=115.24 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=70.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEE-EEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHV-EIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR 77 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V-~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~ 77 (242)
+..++|||+|||+.+++++|+++|+.||.|.+| .|+.+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 9987633 3479999999999999996 5999999999999998
Q ss_pred cCCC
Q 026192 78 WGEY 81 (242)
Q Consensus 78 a~~~ 81 (242)
+.+.
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 7543
No 15
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-15 Score=115.22 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence 458999999999999999999999999999999997754 3579999999999999996 69999999999999987654
Q ss_pred C
Q 026192 82 T 82 (242)
Q Consensus 82 ~ 82 (242)
+
T Consensus 94 ~ 94 (103)
T 2cq3_A 94 V 94 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=5.6e-16 Score=113.16 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=68.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
+..++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3458999999999999999999999999999999998643 2469999999999999995 69999999999999976
Q ss_pred CC
Q 026192 79 GE 80 (242)
Q Consensus 79 ~~ 80 (242)
.+
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 17
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.2e-16 Score=116.19 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 47999999999999999999999999999999998754 3479999999999999996 5999999999999998754
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=6.4e-16 Score=111.88 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=68.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|+|++|.|..+.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 6899999999999999999999999999999997743 3469999999999999996 5999999999999997653
No 19
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=119.40 Aligned_cols=76 Identities=22% Similarity=0.235 Sum_probs=66.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC-CceEEEEeecCC---cCceEEEEecCHHHHHHHH-hc-CCCeecCeeEEEEecC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCG-DPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LL-SGATIVDQPVCIIRWG 79 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G-~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~L-ng~~l~g~~I~V~~a~ 79 (242)
++|||+|||+++||++|+++|+.|| .|.+|+|+++.. ..+||||+|.++++|+.|+ .+ ++..|+|++|.|..+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 899999997643 3579999999999999996 44 5668999999998765
Q ss_pred CC
Q 026192 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
+.
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 20
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1e-15 Score=114.47 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=70.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC------cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEE
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE------CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCI 75 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~------~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V 75 (242)
+..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999997643 2369999999999999996 59999999999999
Q ss_pred EecCCC
Q 026192 76 IRWGEY 81 (242)
Q Consensus 76 ~~a~~~ 81 (242)
..+.+.
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 987543
No 21
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.7e-16 Score=122.08 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=69.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+|+++|+++|+.||+|.+|.|+++.. ..++|||+|.++++|..|+.+||..|+|+.|.|....+
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 47999999999999999999999999999999997643 45799999999999999988999999999999986544
No 22
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=8.6e-16 Score=119.26 Aligned_cols=74 Identities=18% Similarity=0.132 Sum_probs=68.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
.++|||+||++.++|++|+++|+.||+|.+|.|+.+.. ..+||||+|.++++|+.|+ .|||..|.|+.|.|..+
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 47999999999999999999999999999999998754 3469999999999999995 79999999999999875
No 23
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=114.03 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=65.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+.+|+++|+++|+.||.|.+| +.+.....+|||+|.++++|+.|+.|||..|+|+.|.|..+.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 45799999999999999999999999999998 33333223999999999999999779999999999999866443
No 24
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-15 Score=115.76 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC----cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE----CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~----~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.|| |.+|.|+.+.. ..++|||+|.++++|+.|+.|||..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 92 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEcc
Confidence 347999999999999999999999999 99999997743 3579999999999999999999999999999999875
Q ss_pred CC
Q 026192 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
+.
T Consensus 93 ~~ 94 (104)
T 1wi8_A 93 QA 94 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 25
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=5.9e-16 Score=114.34 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
+..++|||+|||+.+++++|+++|+.||+|.+|.+..+.+ ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4458999999999999999999999999999999998644 3479999999999999995 6999999999999998755
Q ss_pred CC
Q 026192 81 YT 82 (242)
Q Consensus 81 ~~ 82 (242)
..
T Consensus 86 ~~ 87 (92)
T 2dgv_A 86 AS 87 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 26
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.65 E-value=1.3e-16 Score=118.32 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=65.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC--CceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCG--DPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G--~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
.+|||+|||+.+|+++|+++|+.|| .|.+|.++.+.. ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999998743 3469999999999999996 899999999999999876
Q ss_pred CCCC
Q 026192 80 EYTD 83 (242)
Q Consensus 80 ~~~~ 83 (242)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 5443
No 27
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.8e-15 Score=114.41 Aligned_cols=77 Identities=25% Similarity=0.310 Sum_probs=69.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+++++|+++|+.|| |.+|.|+.+.. ..++|||+|.++++|+.|+.|||..|.|+.|.|..+.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecC
Confidence 347999999999999999999999997 99999998754 24699999999999999999999999999999998754
Q ss_pred C
Q 026192 81 Y 81 (242)
Q Consensus 81 ~ 81 (242)
.
T Consensus 93 ~ 93 (103)
T 2dng_A 93 R 93 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 28
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=2.3e-16 Score=112.60 Aligned_cols=71 Identities=23% Similarity=0.260 Sum_probs=65.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026192 7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR 77 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~ 77 (242)
+|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+.|||..|+|++|.|..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 589999999999999999999999999999987643 34799999999999999988999999999999975
No 29
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.9e-16 Score=116.29 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 347999999999999999999999999999999997643 3479999999999999996 599999999999999875
Q ss_pred CC
Q 026192 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
+.
T Consensus 92 ~~ 93 (103)
T 2dnm_A 92 YG 93 (103)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 30
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=114.31 Aligned_cols=75 Identities=21% Similarity=0.300 Sum_probs=68.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 47999999999999999999999999999999997643 2469999999999999996 599999999999998653
No 31
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-15 Score=113.98 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||+|.+|.|+.+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 358999999999999999999999999999999997743 2469999999999999996 599999999999999775
Q ss_pred CC
Q 026192 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
+.
T Consensus 94 ~~ 95 (103)
T 2cq0_A 94 PS 95 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 32
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.1e-16 Score=116.59 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=70.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+++++|+++|+.||+|.+|.|+.+.. ..++|||+|.++++|+.|+..||..|.|+.|.|..+.+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccC
Confidence 347999999999999999999999999999999998743 23699999999999999976699999999999987754
Q ss_pred CC
Q 026192 81 YT 82 (242)
Q Consensus 81 ~~ 82 (242)
..
T Consensus 95 ~~ 96 (105)
T 2dh8_A 95 RG 96 (105)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 33
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=117.17 Aligned_cols=77 Identities=27% Similarity=0.288 Sum_probs=68.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+.+||++|++||+.|| |.+|.|+.+.. ..++|||+|.++++|+.|+.+|+..|+|+.|.|.++...
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCC
Confidence 347999999999999999999999999 55999987642 246999999999999999989999999999999987544
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=5.8e-15 Score=113.57 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=71.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 457999999999999999999999999999999998743 2469999999999999996 699999999999999886
Q ss_pred CCCCC
Q 026192 80 EYTDE 84 (242)
Q Consensus 80 ~~~~~ 84 (242)
+.+..
T Consensus 94 ~~~~~ 98 (115)
T 2dgo_A 94 RKPPA 98 (115)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 55443
No 35
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=112.47 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=68.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
+..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 3457999999999999999999999999999999997643 3469999999999999996 79999999999999864
No 36
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=114.24 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=70.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..+.+ ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 347999999999999999999999999999999998733 2469999999999999995 69999999999999987654
Q ss_pred C
Q 026192 82 T 82 (242)
Q Consensus 82 ~ 82 (242)
.
T Consensus 94 ~ 94 (103)
T 2d9p_A 94 E 94 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 37
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.63 E-value=1.9e-15 Score=116.43 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=68.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
...++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+..+|..|+|+.|.|..+.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 4558999999999999999999999999999999998743 3579999999999999998777899999999999765
Q ss_pred C
Q 026192 80 E 80 (242)
Q Consensus 80 ~ 80 (242)
+
T Consensus 103 ~ 103 (109)
T 2rs2_A 103 P 103 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 38
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=1.1e-15 Score=117.71 Aligned_cols=76 Identities=20% Similarity=0.373 Sum_probs=70.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.+..++.+.++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3579999999999999999999999999999999987776789999999999999996 599999999999998764
No 39
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3e-15 Score=115.55 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=69.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYT 82 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~~ 82 (242)
++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ..++|||+|.++++|+.|+..||..|+|+.|.|..+.+..
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVARE 107 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCc
Confidence 7899999999999999999999999999999998743 3469999999999999998779999999999999775443
No 40
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=8.5e-16 Score=119.65 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=67.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+|||+++|+++|++||+.| .|.+|.|+.+.. ..++|||+|.++++|+.|+.+||..|+|+.|.|.++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 899999997643 4579999999999999999999999999999998764
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.62 E-value=2.5e-15 Score=115.79 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=70.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 347999999999999999999999999999999998753 2369999999999999996 899999999999999765
Q ss_pred CC
Q 026192 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
+.
T Consensus 104 ~~ 105 (115)
T 2cpz_A 104 SK 105 (115)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 42
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=2.1e-15 Score=112.73 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 37999999999999999999999999999999997743 3579999999999999995 8999999999999997754
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=115.71 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 357899999999999999999999999999999998744 2479999999999999996 699999999999999775
Q ss_pred C
Q 026192 80 E 80 (242)
Q Consensus 80 ~ 80 (242)
+
T Consensus 102 ~ 102 (106)
T 1p27_B 102 V 102 (106)
T ss_dssp E
T ss_pred C
Confidence 4
No 44
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=115.22 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceE-EEEeecC--CcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVH-VEIIRSG--ECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~-V~l~~~~--~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+|+++|++||+.||.|.+ |.|+.+. ...++|||+|.++++|+.|+..||..|+|+.|.|.++..
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSR 93 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCH
Confidence 3579999999999999999999999999998 8887652 235799999999999999987799999999999987753
No 45
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=112.45 Aligned_cols=75 Identities=27% Similarity=0.341 Sum_probs=68.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 47899999999999999999999999999999998754 2369999999999999995 599999999999998654
No 46
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.6e-15 Score=110.17 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=68.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
+..++|||+|||+.+++++|+++|+.||+|.+|.+. .++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 345899999999999999999999999999999998 469999999999999995 89999999999999977554
Q ss_pred C
Q 026192 82 T 82 (242)
Q Consensus 82 ~ 82 (242)
.
T Consensus 81 ~ 81 (90)
T 2dnq_A 81 S 81 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 47
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.4e-15 Score=110.12 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=67.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+.+++++|+++|+.||+|.+|.+.+ ++|||+|.++++|..|+ .|||..|.|+.|.|..+.+.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 458999999999999999999999999999999984 39999999999999995 79999999999999987544
No 48
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-15 Score=110.26 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+.+++++|++||+.| .|.+|.|+.+.. ..++|||+|.++++|..|+.|||..|+|+.|.|..+.+.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence 35799999999999999999999999 999999998732 246999999999999999779999999999999987543
No 49
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=116.51 Aligned_cols=74 Identities=24% Similarity=0.409 Sum_probs=68.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ..++|||+|.++++|+.|+.|||..|.|+.|.|..+.
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 6899999999999999999999999999999997653 3469999999999999999999999999999999764
No 50
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=115.83 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+||++.+++++|+++|+.||+|.+|.+..+.+ ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+.+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 458999999999999999999999999999999997754 3579999999999999995 5999999999999997654
No 51
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=1.5e-15 Score=118.75 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCC---ceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGD---PVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~---I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+|||+++|+++|++||+.||. |.+|.|+.+.. ..++|||+|.++++|+.|+.|||..|+|+.|.|..+.
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSH 96 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 478999999999999999999999999 89999997643 3469999999999999998899999999999998764
No 52
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=3.2e-15 Score=116.49 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=69.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+.|||..|+|+.|.|..+.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 37999999999999999999999999999999997632 34699999999999999999999999999999997753
No 53
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=115.62 Aligned_cols=78 Identities=24% Similarity=0.338 Sum_probs=70.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
+..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 3458999999999999999999999999999999997743 2469999999999999996 69999999999999976
Q ss_pred CC
Q 026192 79 GE 80 (242)
Q Consensus 79 ~~ 80 (242)
.+
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 54
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=2.4e-15 Score=114.91 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 457899999999999999999999999999999987643 3479999999999999996 599999999999999764
Q ss_pred C
Q 026192 80 E 80 (242)
Q Consensus 80 ~ 80 (242)
+
T Consensus 105 ~ 105 (110)
T 1oo0_B 105 V 105 (110)
T ss_dssp E
T ss_pred c
Confidence 3
No 55
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=112.22 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 347999999999999999999999999999999998752 2369999999999999995 8999999999999997643
No 56
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=3.9e-16 Score=111.15 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=65.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026192 7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR 77 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~ 77 (242)
+|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+.++|..|.|+.|.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 689999999999999999999999999999987643 34799999999999999988899999999999875
No 57
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4e-15 Score=113.96 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecC-----eeEEEEe
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVD-----QPVCIIR 77 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g-----~~I~V~~ 77 (242)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+ ++|||+|.++++|+.|+ .|||..|.| +.|.|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 3579999999999999999999999999999999876 79999999999999995 599999999 9999998
Q ss_pred cCCC
Q 026192 78 WGEY 81 (242)
Q Consensus 78 a~~~ 81 (242)
+.+.
T Consensus 90 a~~~ 93 (108)
T 1x4c_A 90 DGPR 93 (108)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7653
No 58
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.8e-15 Score=110.78 Aligned_cols=74 Identities=14% Similarity=0.267 Sum_probs=67.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
+..++|||+|||+.+|+++|+++|+.||.|.+|.+.+ ++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 3457999999999999999999999999999999984 39999999999999995 69999999999999987554
No 59
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4e-15 Score=112.57 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=69.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 357999999999999999999999999999999997643 3469999999999999996 599999999999999875
Q ss_pred CC
Q 026192 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
+.
T Consensus 94 ~~ 95 (105)
T 1x5u_A 94 AH 95 (105)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9.4e-15 Score=112.04 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 47999999999999999999999999999999997643 2369999999999999996 5999999999999997654
No 61
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.7e-15 Score=114.01 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=69.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|..+ .++|||+|.++++|..|+ .|||..|.|+.|.|..+.+.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 4579999999999999999999999999999999976 579999999999999995 89999999999999976543
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=5.7e-15 Score=115.08 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=70.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--CcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--ECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+. ...++|||+|.+.++|+.|+ .|||..|.|+.|.|..+.+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 3799999999999999999999999999999999764 23479999999999999995 69999999999999988654
Q ss_pred CC
Q 026192 82 TD 83 (242)
Q Consensus 82 ~~ 83 (242)
..
T Consensus 87 ~~ 88 (116)
T 2fy1_A 87 SF 88 (116)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 63
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-15 Score=112.84 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec-C--C-cCceEEEEecCHHHHHHHH-hc-CCCeecCeeEEEEe
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS-G--E-CGGTAYVTFSNAYALETAV-LL-SGATIVDQPVCIIR 77 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~-~--~-~~~~AfV~F~~~~aA~tAl-~L-ng~~l~g~~I~V~~ 77 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|+.+ . + ..++|||+|.++++|..|+ .| ||..|.|+.|.|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~ 93 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 93 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEe
Confidence 3479999999999999999999999999999999876 2 2 3479999999999999995 78 99999999999998
Q ss_pred cCCC
Q 026192 78 WGEY 81 (242)
Q Consensus 78 a~~~ 81 (242)
+.+.
T Consensus 94 a~~~ 97 (107)
T 2cph_A 94 ADSE 97 (107)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 64
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.9e-15 Score=118.18 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCC-CceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCG-DPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+++++|+++|+.|| +|..+.+... ...+||||+|.++++|+.|+ .|||..|+|+.|.|..+..
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 457999999999999999999999999 9999999643 34579999999999999996 7999999999999998754
No 65
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.7e-15 Score=111.37 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=68.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
+..++|||+|||+.+++++|+++|+.||+|.+|.+.++ .++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 34579999999999999999999999999999999865 469999999999999995 8999999999999998754
No 66
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=115.22 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=66.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCC--ceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCC----eecCeeEEE
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGA----TIVDQPVCI 75 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~--I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~----~l~g~~I~V 75 (242)
.||||+|||+.+|+++|+++|+.||. |.+|++++++. +.+||||+|.++++|+.| ..|||. .|+|++|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 58999999999999999999999995 67999988754 347999999999999999 578987 599999999
Q ss_pred EecCC
Q 026192 76 IRWGE 80 (242)
Q Consensus 76 ~~a~~ 80 (242)
..+.+
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 97653
No 67
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.60 E-value=4.5e-15 Score=112.65 Aligned_cols=76 Identities=22% Similarity=0.231 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 357999999999999999999999999999999997752 2369999999999999995 599999999999998753
No 68
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.1e-15 Score=117.35 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=66.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcC--CCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLS--GATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Ln--g~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+||++|+++|+.||+|.+|.|+++ .+||||+|+++++|+.|+ .|+ +..|.|++|.|..+.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 3579999999999999999999999999999999975 479999999999999995 465 5899999999987654
No 69
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=111.47 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCce-EEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCee----EE
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPV-HVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQP----VC 74 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~-~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~----I~ 74 (242)
..++|||+|||+.+++++|+++|+.||+|. +|.++.+.. ..++|||+|.++++|+.|+ .|||..|.|+. |.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 347999999999999999999999999999 999998753 2369999999999999996 59999999999 99
Q ss_pred EEecCC
Q 026192 75 IIRWGE 80 (242)
Q Consensus 75 V~~a~~ 80 (242)
|..+.+
T Consensus 88 v~~a~~ 93 (99)
T 2div_A 88 LNYATY 93 (99)
T ss_dssp EEETTC
T ss_pred EeecCC
Confidence 987643
No 70
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=116.43 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCc-eEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDP-VHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I-~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+|+++|++||+.||.| .+|.|+.+.. ..++|||+|.++++|+.|+.+||..|+|+.|.|..+..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECH
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCH
Confidence 35799999999999999999999999999 8999987642 35799999999999999987799999999999998754
No 71
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7e-15 Score=111.01 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~ 81 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ..++|||+|.++++|+.|+. ++..|+|+.|.|..+.+.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTT
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCC
Confidence 47899999999999999999999999999999998743 24699999999999999977 688999999999977554
Q ss_pred C
Q 026192 82 T 82 (242)
Q Consensus 82 ~ 82 (242)
.
T Consensus 94 ~ 94 (103)
T 2cqg_A 94 Q 94 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 72
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.4e-15 Score=112.71 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=69.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcC------CCeecCeeEE
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLS------GATIVDQPVC 74 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Ln------g~~l~g~~I~ 74 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ..++|||+|.++++|..|+ .|| |..|+|+.|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~ 94 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK 94 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence 47899999999999999999999999999999997743 3579999999999999995 788 9999999999
Q ss_pred EEecCC
Q 026192 75 IIRWGE 80 (242)
Q Consensus 75 V~~a~~ 80 (242)
|..+.+
T Consensus 95 v~~a~~ 100 (111)
T 1x4h_A 95 VDLAVT 100 (111)
T ss_dssp EECCCC
T ss_pred EEECCC
Confidence 997654
No 73
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=7.5e-15 Score=114.73 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=70.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
.++|||+||++.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+...
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 47999999999999999999999999999999997642 3479999999999999996 59999999999999987654
Q ss_pred CC
Q 026192 82 TD 83 (242)
Q Consensus 82 ~~ 83 (242)
..
T Consensus 115 ~~ 116 (124)
T 2kt5_A 115 ID 116 (124)
T ss_dssp TC
T ss_pred CC
Confidence 33
No 74
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=4.3e-16 Score=114.83 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=66.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~ 81 (242)
++|||+|||+.+++++|+++|+.||+|.+|.+.++.. ..++|||+|.+++ |..| ..|||..|+|+.|.|..+.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999999999997743 3479999999999 9999 579999999999999987654
Q ss_pred C
Q 026192 82 T 82 (242)
Q Consensus 82 ~ 82 (242)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 75
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=115.56 Aligned_cols=76 Identities=24% Similarity=0.287 Sum_probs=67.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC---C-cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG---E-CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~---~-~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+||++.+++++|+++|+.|| |.+|.|..+. + ..++|||+|.+.++|..|+.|||..|+|+.|.|..+.
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEecc
Confidence 458999999999999999999999999 9999999764 2 3479999999999999999999999999999998764
Q ss_pred C
Q 026192 80 E 80 (242)
Q Consensus 80 ~ 80 (242)
+
T Consensus 97 ~ 97 (100)
T 2j76_E 97 Q 97 (100)
T ss_dssp C
T ss_pred C
Confidence 3
No 76
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=4.2e-15 Score=112.63 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=69.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCee---cCeeEEE
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATI---VDQPVCI 75 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l---~g~~I~V 75 (242)
+..++|||+|||+.+++++|+++|+.||+|.+|.|+.+.. ..++|||+|.++++|..|+ .|||..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3458999999999999999999999999999999998643 3579999999999999995 6999998 8999999
Q ss_pred EecCC
Q 026192 76 IRWGE 80 (242)
Q Consensus 76 ~~a~~ 80 (242)
..+.+
T Consensus 91 ~~a~~ 95 (106)
T 2dgp_A 91 KPADS 95 (106)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 97754
No 77
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-15 Score=112.29 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=68.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.++.++.+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 457899999999999999999999999999887776543 2479999999999999996 999999999999999765
Q ss_pred C
Q 026192 80 E 80 (242)
Q Consensus 80 ~ 80 (242)
+
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 78
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=5.8e-15 Score=111.65 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecC---eeEEEEe
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVD---QPVCIIR 77 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g---~~I~V~~ 77 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|.| +.|.|..
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 358999999999999999999999999999999997743 2469999999999999995 699999998 9999997
Q ss_pred cCCC
Q 026192 78 WGEY 81 (242)
Q Consensus 78 a~~~ 81 (242)
+.+.
T Consensus 94 a~~~ 97 (105)
T 2dnh_A 94 ADTD 97 (105)
T ss_dssp SCSS
T ss_pred CccC
Confidence 7543
No 79
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=4.3e-15 Score=114.80 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=67.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
..++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|+|+.|+|..+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 358999999999999999999999999999999997643 3579999999999999995 69999999999999754
No 80
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=5.9e-15 Score=110.87 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCe
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQ 71 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~ 71 (242)
..++|||+|||+.+++++|+++|+.||.|.+ |.+..+.. ..++|||+|.++++|+.|+ .|||..|.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4579999999999999999999999999999 99997743 2469999999999999996 6999999999
Q ss_pred eEEEEec
Q 026192 72 PVCIIRW 78 (242)
Q Consensus 72 ~I~V~~a 78 (242)
.|.|..+
T Consensus 92 ~l~V~~A 98 (99)
T 2la6_A 92 PIKVSFA 98 (99)
T ss_dssp BCEEEEC
T ss_pred EEEEEec
Confidence 9999865
No 81
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-14 Score=112.27 Aligned_cols=77 Identities=19% Similarity=0.130 Sum_probs=68.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ..++|||+|.++++|+.|+ .||+ .|.|+.|.|..+.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 357999999999999999999999999999999997743 3469999999999999995 6676 9999999999875
Q ss_pred CC
Q 026192 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
..
T Consensus 95 ~~ 96 (116)
T 2cqd_A 95 LG 96 (116)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 82
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=114.96 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCCCCHHHHH---HHhccCCCceEEEEeecCC------cCceEEEEecCHHHHHHHH-hcCCCeecCeeEE
Q 026192 5 GYVAEVVGLSPNATEKDIH---EFFSHCGDPVHVEIIRSGE------CGGTAYVTFSNAYALETAV-LLSGATIVDQPVC 74 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLr---efFs~~G~I~~V~l~~~~~------~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~ 74 (242)
.++|||+|||+.+++++|+ ++|+.||+|.+|.|.++.+ ..++|||+|.++++|+.|+ .|||..|+|++|.
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 4689999999999999999 9999999999999997653 2269999999999999995 6899999999999
Q ss_pred EEecCCC
Q 026192 75 IIRWGEY 81 (242)
Q Consensus 75 V~~a~~~ 81 (242)
|..+.+.
T Consensus 95 V~~a~~k 101 (111)
T 2cpi_A 95 ASLGTTK 101 (111)
T ss_dssp EESCCCC
T ss_pred EEecccc
Confidence 9976543
No 83
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=3.2e-15 Score=110.97 Aligned_cols=76 Identities=21% Similarity=0.164 Sum_probs=67.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.++.++.+.. ..++|||+|.++++|+.|+ .|||..|.|++|.|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 347999999999999999999999999999888887543 2469999999999999996 599999999999998653
No 84
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=110.46 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=63.1
Q ss_pred cEEEEeCCCCCC------CHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCe-eEEE
Q 026192 6 YVAEVVGLSPNA------TEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQ-PVCI 75 (242)
Q Consensus 6 ~tV~VsNLs~~~------TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~-~I~V 75 (242)
++|||+|||+.+ ++++|+++|+.||+|.+|.+.++.+ ..++|||+|.++++|..|+ .|||..|+|+ +|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 699999999999 7899999999999999999985544 3479999999999999995 6999999999 8876
No 85
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.7e-15 Score=107.47 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=65.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHh-c-CCCeecCeeEEEEec
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL-L-SGATIVDQPVCIIRW 78 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~-L-ng~~l~g~~I~V~~a 78 (242)
..++|||+|||+.+++++|+++|+.||+|.+|.+.++ .++|||+|.++++|..|+. | ||..|.|++|.|..+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 3479999999999999999999999999999999974 4699999999999999964 7 999999999999754
No 86
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=1.6e-15 Score=115.06 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=68.8
Q ss_pred CcEEEEeCCCC------CCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecC-eeE
Q 026192 5 GYVAEVVGLSP------NATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVD-QPV 73 (242)
Q Consensus 5 ~~tV~VsNLs~------~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g-~~I 73 (242)
.++|||+|||+ .+++++|+++|+.||+|.+|.|+.+.. +.++|||+|.++++|+.|+ .|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57999999999 999999999999999999999998754 3479999999999999995 799999999 999
Q ss_pred EEEecC
Q 026192 74 CIIRWG 79 (242)
Q Consensus 74 ~V~~a~ 79 (242)
.|..+.
T Consensus 86 ~V~~a~ 91 (100)
T 3ns6_A 86 FLYTMK 91 (100)
T ss_dssp EEEESH
T ss_pred EEEECc
Confidence 998764
No 87
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.6e-15 Score=112.27 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCce--------EEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCe
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPV--------HVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQ 71 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~--------~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~ 71 (242)
..++|||+|||+.+|+++|+++|+.||.|. .|.|..+.. ..++|||+|.++++|+.|+ .|||..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 347999999999999999999999999999 699987633 3469999999999999996 5999999999
Q ss_pred eEEEEecCCC
Q 026192 72 PVCIIRWGEY 81 (242)
Q Consensus 72 ~I~V~~a~~~ 81 (242)
.|.|..+...
T Consensus 94 ~l~V~~a~~~ 103 (113)
T 2cpe_A 94 KLKVSLARKK 103 (113)
T ss_dssp ECEEECSSCC
T ss_pred EEEEEECCCC
Confidence 9999977554
No 88
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.4e-15 Score=110.26 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeec--CeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIV--DQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~--g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||+|.+|.+..+ .++|||+|.++++|+.|+ .|||..|. |+.|.|..+.+
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 479999999999999999999999999999999864 469999999999999996 59999999 99999997654
No 89
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=3.1e-15 Score=111.46 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCHHHHH----HHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 4 GGYVAEVVGLSPNATEKDIH----EFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLr----efFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
..++|||+|||+.+++++|+ ++|+.||.|.+|.+.+.+...++|||+|.++++|..|+ .|||..|.|+.|.|..+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34799999999999999999 99999999999999854444579999999999999995 69999999999999976
Q ss_pred CC
Q 026192 79 GE 80 (242)
Q Consensus 79 ~~ 80 (242)
.+
T Consensus 87 ~~ 88 (97)
T 1nu4_A 87 KT 88 (97)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.58 E-value=4.1e-15 Score=112.78 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=68.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026192 2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
++....|+|+||++.+||++|+++|+.||+|.++.+.. +.+||||+|.++++|+.| ..|||..|+|++|.|..+
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 34557899999999999999999999999999999976 357999999999999999 699999999999999866
No 91
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-14 Score=110.98 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=65.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-h--cCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-L--LSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~--Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.++|++|+++|+.||.|.+|.++++ .++|||+|.++++|..|+ . .++..|.|++|.|..+..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 479999999999999999999999999999999865 579999999999999994 3 468899999999997753
No 92
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=112.27 Aligned_cols=75 Identities=27% Similarity=0.233 Sum_probs=68.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEYT 82 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~~ 82 (242)
++|||+|||+.+|+++|+++|+.||+|.+|.+..+ ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999977 4579999999999999995 599999999999999876544
No 93
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.2e-15 Score=114.76 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=66.8
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCC--CeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSG--ATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng--~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+ .+||++|+++|+.||+|.+|.|++++ ++|||+|+++++|..|+ .||+ ..|.|++|.|..+.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k---g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI---NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS---SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC---CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 347999999999 99999999999999999999998753 69999999999999994 5665 56999999999886
Q ss_pred CCC
Q 026192 80 EYT 82 (242)
Q Consensus 80 ~~~ 82 (242)
.+.
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 543
No 94
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-14 Score=107.84 Aligned_cols=73 Identities=23% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccC--CCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHC--GDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~--G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+++++|+++|+.| |.|.+|.+. .++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 45799999999999999999999999 999999886 359999999999999996 5999999999999997754
Q ss_pred C
Q 026192 81 Y 81 (242)
Q Consensus 81 ~ 81 (242)
.
T Consensus 89 ~ 89 (99)
T 2cpd_A 89 V 89 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 95
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=3.5e-15 Score=120.59 Aligned_cols=75 Identities=20% Similarity=0.367 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCC---ceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGD---PVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~---I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a 78 (242)
..++|||+|||+++|+++|++||+.||. |.+|.|+.+.. ..++|||+|.++++|+.|+.|||..|+|+.|.|..+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS 122 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEEC
Confidence 3578999999999999999999999999 89999997644 346999999999999999889999999999999875
No 96
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=7e-15 Score=107.26 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=65.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccC----C-------CceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeE
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHC----G-------DPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPV 73 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~----G-------~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I 73 (242)
.++|||+|||+.+++++|+++|+.| | .|.++.+.++ .++|||+|.++++|..|+.|||..|.|+.|
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 4799999999999999999999999 8 9999999865 479999999999999999999999999999
Q ss_pred EEEe
Q 026192 74 CIIR 77 (242)
Q Consensus 74 ~V~~ 77 (242)
.|.+
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 97
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=115.99 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCC---ceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGD---PVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~---I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a 78 (242)
..++|||+|||+.+|+++|++||+.||. |.+|.|+.+.. ..++|||+|.++++|+.|+.+||..|+|+.|.|..+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEI 89 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEEC
Confidence 4579999999999999999999999998 99999987643 457999999999999999889999999999999876
Q ss_pred C
Q 026192 79 G 79 (242)
Q Consensus 79 ~ 79 (242)
.
T Consensus 90 ~ 90 (107)
T 2lmi_A 90 N 90 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 98
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.57 E-value=1.1e-14 Score=110.31 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=67.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEYTD 83 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~~~ 83 (242)
.++|||+|||+.+|+++|+++|+.||.|.+|.+.+ ++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+...
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-----DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-----SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 47999999999999999999999999999999973 49999999999999996 5999999999999998765443
No 99
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.57 E-value=4.3e-15 Score=113.41 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=68.3
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCe-eEEE
Q 026192 5 GYVAEVVGLSPNA------TEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQ-PVCI 75 (242)
Q Consensus 5 ~~tV~VsNLs~~~------TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~-~I~V 75 (242)
.++|||+|||+.+ |+++|+++|+.||.|.+|.|.+..+ +.++|||+|.++++|..|+ .|||..|+|+ +|.|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 4799999999999 7899999999999999999985444 3479999999999999995 6999999998 9999
Q ss_pred EecCCC
Q 026192 76 IRWGEY 81 (242)
Q Consensus 76 ~~a~~~ 81 (242)
..+.+.
T Consensus 95 ~~a~~~ 100 (105)
T 2nlw_A 95 NLFTDF 100 (105)
T ss_dssp ECSCCC
T ss_pred EEcchH
Confidence 977543
No 100
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=111.44 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=68.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 37999999999999999999999999999999997743 2469999999999999996 699999999999999764
No 101
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-15 Score=110.86 Aligned_cols=75 Identities=24% Similarity=0.353 Sum_probs=66.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR 77 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~ 77 (242)
+..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|++..
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4568999999999999999999999999999999997643 3469999999999999995 6999999999887753
No 102
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=1.8e-14 Score=116.71 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=71.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+|+++|+++|+.||+|.+|.|+.+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 458999999999999999999999999999999998754 2369999999999999996 599999999999999886
Q ss_pred CCCC
Q 026192 80 EYTD 83 (242)
Q Consensus 80 ~~~~ 83 (242)
+...
T Consensus 118 ~~~~ 121 (156)
T 1h2v_Z 118 GFKE 121 (156)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 5443
No 103
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.4e-15 Score=117.91 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=66.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+|+++|++||+.||.|.++.++.+.. ..++|||+|.++++|+.|+.|||..|+|+.|.|..+.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 347999999999999999999999999998854443322 3479999999999999998899999999999998763
No 104
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.2e-15 Score=106.70 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=64.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+ .++ ..|+|++|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999999997643 3479999999999999996 556 9999999999754
No 105
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=7.6e-15 Score=110.46 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=66.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|++.+. .++|||+|.+.++|..|+ .|||..|+|+.|.|..+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE---KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3579999999999999999999999999999999843 479999999999999995 899999999999997653
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=115.47 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=66.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcC--CCeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLS--GATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Ln--g~~l~g~~I~V~~a~~~ 81 (242)
.++|||+|||+.+||++|+++|+.||+|.+|.|+++ .++|||+|+++++|..|+ .|+ +..|.|++|.|..+...
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 479999999999999999999999999999999975 479999999999999995 566 57899999999987543
No 107
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=109.35 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=65.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
...++|||+|||+.+|+++|+++|+.||.| .++.+ +...++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 345899999999999999999999999987 44443 234579999999999999996 599999999999999875
Q ss_pred CC
Q 026192 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
+.
T Consensus 90 ~~ 91 (101)
T 2fc9_A 90 PR 91 (101)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 108
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.3e-15 Score=110.61 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhcc-CCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCe-ecCeeEEEEec
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSH-CGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGAT-IVDQPVCIIRW 78 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~-~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~-l~g~~I~V~~a 78 (242)
..++|||+|||+.+|+++|+++|+. ||.|.+|.|+.+.. ..++|||+|.++++|..|+ .|||.. |.|+.|.|..+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 3579999999999999999999999 99999999997742 2469999999999999995 599999 99999999877
Q ss_pred CCC
Q 026192 79 GEY 81 (242)
Q Consensus 79 ~~~ 81 (242)
.+.
T Consensus 88 ~~~ 90 (104)
T 2dhg_A 88 IPK 90 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 109
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=1.4e-14 Score=111.57 Aligned_cols=72 Identities=22% Similarity=0.340 Sum_probs=66.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+|+++|+++|+.||.|.+|.+. .++|||+|.+.++|+.|+ .|||..|+|+.|.|..+..
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 35799999999999999999999999999999998 479999999999999995 6999999999999997643
No 110
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.57 E-value=8.2e-15 Score=114.44 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
...++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 3457999999999999999999999999999999987643 3469999999999999996 79999999999999977
Q ss_pred CCC
Q 026192 79 GEY 81 (242)
Q Consensus 79 ~~~ 81 (242)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 543
No 111
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=110.35 Aligned_cols=76 Identities=13% Similarity=0.136 Sum_probs=67.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEE-EeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVE-IIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~-l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
.++|||+|||+.+++++|+++|+.||.|.+|+ ++.+... +.|||+|.++++|..|+ .|||..|+|+.|.|..+.+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~-~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET-AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS-EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 57899999999999999999999999999995 7766543 34999999999999996 69999999999999977543
No 112
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=1.4e-14 Score=110.91 Aligned_cols=71 Identities=24% Similarity=0.290 Sum_probs=66.0
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+. +++++|+++|+.||.|.+|.+ ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 379999999999 999999999999999999999 2579999999999999996 9999999999999998754
No 113
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.8e-15 Score=109.63 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=67.0
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+ .+++++|+++|+.||.|.+|.+. .++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 458999999999 99999999999999999999995 479999999999999995 59999999999999987544
No 114
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.56 E-value=2.2e-14 Score=108.28 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=66.2
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 3 AGGYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 3 ~~~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
+..++|||+||++ .+++++|+++|+.||.|.+|.+. .++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 4468999999999 99999999999999999999995 579999999999999995 599999999999998764
No 115
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=114.06 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=70.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+||++.+++++|+++|+.||+|.+|.|+.+..+ .++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 479999999999999999999999999999999987542 469999999999999996 5999999999999998765
Q ss_pred CCC
Q 026192 81 YTD 83 (242)
Q Consensus 81 ~~~ 83 (242)
...
T Consensus 122 ~~~ 124 (139)
T 1u6f_A 122 GHQ 124 (139)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 116
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=119.00 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=67.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCC--CceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCG--DPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G--~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
.++|||+||++.+|+++|+++|+.|| .|.+|.|+.+.. ..+||||+|.++++|+.|+ .|||..|+|+.|.|..+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 47999999999999999999999999 999999998743 3469999999999999994 78999999999999976
Q ss_pred C
Q 026192 79 G 79 (242)
Q Consensus 79 ~ 79 (242)
.
T Consensus 135 ~ 135 (156)
T 3n9u_C 135 T 135 (156)
T ss_dssp C
T ss_pred C
Confidence 3
No 117
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=114.47 Aligned_cols=74 Identities=23% Similarity=0.271 Sum_probs=67.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEe
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIR 77 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~ 77 (242)
..++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+ .|||..|+|+.|.|..
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 357999999999999999999999999999999987633 3579999999999999996 7999999999999974
No 118
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=108.97 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=66.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||.|. +.++.+ ...++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 57999999999999999999999999997 676654 33579999999999999995 8999999999999997653
No 119
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.55 E-value=1.5e-14 Score=116.91 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|+|++|.|..+.+
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47999999999999999999999999999999997642 3579999999999999996 6999999999999998764
Q ss_pred C
Q 026192 81 Y 81 (242)
Q Consensus 81 ~ 81 (242)
.
T Consensus 150 ~ 150 (158)
T 2kn4_A 150 G 150 (158)
T ss_dssp S
T ss_pred C
Confidence 3
No 120
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=110.16 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=69.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCC-ceEEEEe-ecCC---cCceEEEEecCHHHHHHHH-hcC--CCeecCeeEE
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGD-PVHVEII-RSGE---CGGTAYVTFSNAYALETAV-LLS--GATIVDQPVC 74 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~-I~~V~l~-~~~~---~~~~AfV~F~~~~aA~tAl-~Ln--g~~l~g~~I~ 74 (242)
+..++|||+|||+.+++++|+++|+.||. |.+|.++ .+.. ..++|||+|.++++|..|+ .|| +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 44689999999999999999999999998 9999998 5543 3479999999999999996 575 4899999999
Q ss_pred EEecCCCCC
Q 026192 75 IIRWGEYTD 83 (242)
Q Consensus 75 V~~a~~~~~ 83 (242)
|..+.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 998765433
No 121
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=112.06 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=66.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.|... .++|||+|.++++|+.|+ .|||..|.|++|.|..+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS---SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 479999999999999999999999999999998753 469999999999999995 7999999999999997754
No 122
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-14 Score=110.66 Aligned_cols=74 Identities=22% Similarity=0.193 Sum_probs=65.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCC--CeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSG--ATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng--~~l~g~~I~V~~a~~~ 81 (242)
.++|||+|||+.++|++|+++|+.||+|.+|.|+++ .++|||+|+++++|..|+ .|++ ..|.|++|.|..+...
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 479999999999999999999999999999999864 479999999999999995 4654 5699999999987543
No 123
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=9.9e-15 Score=116.10 Aligned_cols=77 Identities=26% Similarity=0.293 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||+|.+|.|+.+.. ..++|||+|.++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 347899999999999999999999999999999997643 3479999999999999996 599999999999998664
Q ss_pred C
Q 026192 80 E 80 (242)
Q Consensus 80 ~ 80 (242)
+
T Consensus 125 ~ 125 (129)
T 2kxn_B 125 T 125 (129)
T ss_dssp S
T ss_pred C
Confidence 3
No 124
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=106.21 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=65.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCC-ceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCC-CeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGD-PVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSG-ATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~-I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng-~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+|+++|+++|+.||. |..+.+.. .++|||+|.++++|+.|+ .||| ..|+|+.|.|..+.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK----SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE----TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC----CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 4579999999999999999999999999 77777643 479999999999999995 6999 999999999998754
Q ss_pred C
Q 026192 81 Y 81 (242)
Q Consensus 81 ~ 81 (242)
.
T Consensus 83 ~ 83 (93)
T 2cqh_A 83 K 83 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 125
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=108.34 Aligned_cols=74 Identities=27% Similarity=0.326 Sum_probs=65.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||.|..+ ...+...++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4799999999999999999999999999887 333334579999999999999996 5999999999999997754
No 126
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=115.35 Aligned_cols=76 Identities=18% Similarity=0.328 Sum_probs=68.1
Q ss_pred CcEEEEeCCCCCCCHHHHH----HHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIH----EFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLr----efFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+|||+.+++++|+ ++|+.||+|.+|.+...+...++|||+|.++++|..|+ .|||..|.|++|.|..+.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 4799999999999999876 69999999999998765555689999999999999995 899999999999999764
Q ss_pred C
Q 026192 80 E 80 (242)
Q Consensus 80 ~ 80 (242)
.
T Consensus 109 ~ 109 (127)
T 2a3j_A 109 T 109 (127)
T ss_dssp C
T ss_pred C
Confidence 3
No 127
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=7.3e-15 Score=116.83 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=67.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCc----eEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDP----VHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR 77 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I----~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~ 77 (242)
..++|||+|||+++|+++|++||+.||.| .+|.|+.+.. ..++|||+|.++++|+.|+..|+..|+|+.|.|.+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45799999999999999999999999875 6899987632 34799999999999999988899999999999987
Q ss_pred cC
Q 026192 78 WG 79 (242)
Q Consensus 78 a~ 79 (242)
+.
T Consensus 102 a~ 103 (123)
T 2dha_A 102 ST 103 (123)
T ss_dssp EC
T ss_pred CC
Confidence 63
No 128
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.54 E-value=1.2e-14 Score=117.12 Aligned_cols=74 Identities=23% Similarity=0.214 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+|+++|+++|+.||.|.+|++.++ +.++|||+|.++++|..|+ .|||..|.|++|.|..+.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 3579999999999999999999999999999999876 3579999999999999996 699999999999998764
No 129
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=4.2e-15 Score=120.64 Aligned_cols=77 Identities=27% Similarity=0.296 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+++||++|++||+.|| |.+|.|+.+.. ..++|||+|.++++|+.|+.+|+..|+|+.|.|..+...
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCC
Confidence 347899999999999999999999999 77999987643 357999999999999999999999999999999877543
No 130
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.8e-14 Score=113.68 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=69.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEYT 82 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~~ 82 (242)
++|||+|||+++|+++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+ .|||..+.|+.|.|..+.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999997643 3469999999999999996 999999999999999775443
No 131
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.53 E-value=1.7e-14 Score=108.72 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=68.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|+.|+. +|..|.|+.|.|..+..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 37999999999999999999999999999999998752 24799999999999999988 99999999999987753
No 132
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=3.6e-14 Score=109.53 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=64.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCe--ecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGAT--IVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~--l~g~~I~V~~a~ 79 (242)
.++|||+|||+.+||++|+++|+.||+|.+|.+++. .++|||+|++.++|..| ..|||.. |.|++|.|..+.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 479999999999999999999999999999999864 46999999999999999 4788775 889999998754
No 133
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=3.3e-14 Score=105.93 Aligned_cols=70 Identities=24% Similarity=0.344 Sum_probs=61.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCee--cCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI--VDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l--~g~~I~V~~a~ 79 (242)
.++|||+|||+++||++|+++|+.||+|.+|.|+.+ +.+||||+|.++++|+. ++|..+ .|+.|.|..+.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEcC
Confidence 479999999999999999999999999999999875 45799999999999884 556554 59999998764
No 134
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.5e-14 Score=105.22 Aligned_cols=74 Identities=26% Similarity=0.252 Sum_probs=62.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.+..+ ..++|||+|.++++|+.+... +..+.|+.|.|..+.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4589999999999999999999999999999999865 457999999999999764222 3455899999987643
No 135
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.53 E-value=1.4e-14 Score=115.85 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=66.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCce--EEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPV--HVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~--~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+|||+++||++|++||+.| .|. +|.|+.+.. ..+||||+|.++++|+.|+.+++..|+|+.|.|.++.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 4799999999999999999999999 577 899986643 4579999999999999998889999999999998763
No 136
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=4.9e-14 Score=103.91 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
...++|||+|||+.+++++|+++|+.| .|.+|.+. ...++|||+|.++++|+.|+ .|||..++|++|.|..+..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 345799999999999999999999999 99999985 33579999999999999995 6999999999999997643
No 137
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=5e-15 Score=111.48 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec---CCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS---GECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~---~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+|+++|+++|+.||.|.. .++.+ +...+||||+|.++++|+.|+.|||..|.|+.|.|..+.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 3579999999999999999999999999988 44433 2345799999999999999977999999999999997654
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.52 E-value=6.4e-14 Score=111.67 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||+|.+|.++++.. ..++|||+|.++++|..|+ .|||..+.|++|.|..+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 37999999999999999999999999999999998753 2369999999999999996 5999999999999987654
No 139
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=1.2e-14 Score=112.95 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=64.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCee-----EEEEe
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQP-----VCIIR 77 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~-----I~V~~ 77 (242)
..++|||+|||+.+++++|+++|+.||+|.+|.|+.+ ++|||+|.++++|+.|+ .|||..|+|+. |.|..
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 3478999999999999999999999999999999865 79999999999999995 59999999988 77776
Q ss_pred cCC
Q 026192 78 WGE 80 (242)
Q Consensus 78 a~~ 80 (242)
..+
T Consensus 91 ~~~ 93 (115)
T 3beg_B 91 DGP 93 (115)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 140
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.6e-14 Score=108.30 Aligned_cols=77 Identities=23% Similarity=0.365 Sum_probs=66.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCc----eEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDP----VHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I----~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
..++|||+|||+.+|+++|+++|+.||.| ..+.+. .+...++|||+|.+.++|..|+ .|||..|.|+.|.|..+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 34799999999999999999999999999 566655 3334579999999999999996 69999999999999987
Q ss_pred CCC
Q 026192 79 GEY 81 (242)
Q Consensus 79 ~~~ 81 (242)
.+.
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 141
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.8e-14 Score=107.37 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=66.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCee--------cCee
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATI--------VDQP 72 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l--------~g~~ 72 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ..++|||+|.++++|..|+ .|||..| .+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~ 103 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 103 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence 457999999999999999999999999999999998742 2469999999999999995 6999999 4667
Q ss_pred EEEEecC
Q 026192 73 VCIIRWG 79 (242)
Q Consensus 73 I~V~~a~ 79 (242)
|.|..+.
T Consensus 104 l~v~~a~ 110 (114)
T 1x5o_A 104 LLCKFSG 110 (114)
T ss_dssp BEEEECC
T ss_pred eeEEccC
Confidence 7777554
No 142
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.51 E-value=7e-14 Score=114.71 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=68.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. ..+||||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 347899999999999999999999999999999997743 2469999999999999996 699999999999998764
Q ss_pred C
Q 026192 80 E 80 (242)
Q Consensus 80 ~ 80 (242)
.
T Consensus 151 ~ 151 (165)
T 1rk8_A 151 V 151 (165)
T ss_dssp E
T ss_pred C
Confidence 4
No 143
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.51 E-value=2e-14 Score=115.03 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=69.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 46899999999999999999999999999999987642 3469999999999999996 6999999999999997754
Q ss_pred C
Q 026192 81 Y 81 (242)
Q Consensus 81 ~ 81 (242)
.
T Consensus 127 ~ 127 (135)
T 2lea_A 127 G 127 (135)
T ss_dssp C
T ss_pred C
Confidence 3
No 144
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=8.5e-14 Score=114.40 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~ 81 (242)
.++|||+|||+.+|+++|+++|+.||.|.+|.++.+.. ..++|||+|.++++|..|+.++|..|.|+.|.|..+...
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 47999999999999999999999999999999998743 346999999999999999988999999999999987544
No 145
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.50 E-value=1.1e-13 Score=110.95 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=69.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||+|.+|.++++.. ..++|||+|.++++|..|+ .|||..+.|++|.|..+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 48999999999999999999999999999999997643 3479999999999999996 6999999999999997654
No 146
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=114.41 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=67.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceE--EEEeecCC---cCceEEEEecCHHHHHHH-HhcCCC----eecCeeEE
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVH--VEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGA----TIVDQPVC 74 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~----~l~g~~I~ 74 (242)
.++|||+|||+.+||++|+++|+.||.|.. |+|+++.. ..+||||+|.++ ++..| ..|||. .|+|+.|.
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~ 101 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTIN 101 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEE
Confidence 479999999999999999999999999977 99998753 347999999999 99999 689999 99999999
Q ss_pred EEecCC
Q 026192 75 IIRWGE 80 (242)
Q Consensus 75 V~~a~~ 80 (242)
|..+.+
T Consensus 102 V~~a~~ 107 (131)
T 2m2b_A 102 VEFAKG 107 (131)
T ss_dssp CEECCC
T ss_pred EEECCC
Confidence 997754
No 147
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=7.1e-14 Score=111.67 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=66.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEE
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCI 75 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V 75 (242)
.++|||+|||+.+|+++|+++|+.||.|.+ |.+...+...++|||+|.++++|..|+ .|||..|.|+.|.|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 479999999999999999999999999987 445554555679999999999999996 59999999999999
Q ss_pred EecCC
Q 026192 76 IRWGE 80 (242)
Q Consensus 76 ~~a~~ 80 (242)
..+..
T Consensus 125 ~~a~~ 129 (143)
T 3egn_A 125 QFARS 129 (143)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 97753
No 148
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.1e-14 Score=109.48 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=65.3
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hc--CCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LL--SGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~L--ng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||++ ++|++|+++|+.||+|.+|.|.+. .++|||+|.++++|..|+ .| ++..|.|++|.|..+..
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 479999999998 999999999999999999999854 479999999999999994 45 45679999999998754
Q ss_pred C
Q 026192 81 Y 81 (242)
Q Consensus 81 ~ 81 (242)
.
T Consensus 102 ~ 102 (112)
T 1x4f_A 102 Y 102 (112)
T ss_dssp C
T ss_pred c
Confidence 3
No 149
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=1.5e-13 Score=116.32 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=68.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYT 82 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~~ 82 (242)
++|||+|||+.+|+++|+++|+.||.|.+|+|.++.. ..++|||+|.++++|+.|+.+.+..|+|++|.|....+|.
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 7999999999999999999999999999999997643 3479999999999999998777789999999999776553
No 150
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=103.78 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=63.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.|+ .|.++.+.. ..++|||+|.++++|+.|+ .|||..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 357899999999999999999999774 566665532 3469999999999999996 699999999999999875
Q ss_pred CC
Q 026192 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
+.
T Consensus 91 ~~ 92 (102)
T 2fc8_A 91 PK 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 151
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.49 E-value=1.4e-13 Score=116.71 Aligned_cols=75 Identities=28% Similarity=0.293 Sum_probs=68.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
+||||+|||+++||++|+++|+.||+|.+|+|+++.. ..++|||+|.++++|..|+ .+||..+.|+.|.+.....
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 6999999999999999999999999999999998754 3469999999999999994 8999999999999986543
No 152
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=7.8e-14 Score=116.72 Aligned_cols=77 Identities=22% Similarity=0.225 Sum_probs=69.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--CcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--ECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+. ...++|||+|.++++|..|+ .|||..|+|+.|.|..+...
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 4799999999999999999999999999999999764 23479999999999999996 59999999999999977543
No 153
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.48 E-value=8.6e-14 Score=120.89 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=67.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCC--CceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCG--DPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G--~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
.++|||+||++.+|+++|+++|+.|| +|.+|+|+.+.. ..+||||+|.+.++|+.|+ .|||..|.|+.|.|..+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 46899999999999999999999999 999999998754 2469999999999999996 59999999999999976
Q ss_pred C
Q 026192 79 G 79 (242)
Q Consensus 79 ~ 79 (242)
.
T Consensus 148 ~ 148 (229)
T 3q2s_C 148 N 148 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.6e-13 Score=100.82 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=64.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|| .+|+++|+++|+.||+|.+|.|.+ ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 3479999996 899999999999999999999953 3469999999999999995 8999999999999997654
No 155
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.48 E-value=2.1e-13 Score=112.01 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=68.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~ 81 (242)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+..+|..|+|+.|.|..+.+.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC--
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCCh
Confidence 37999999999999999999999999999999998743 346999999999999999877999999999999977543
No 156
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-13 Score=106.16 Aligned_cols=74 Identities=30% Similarity=0.469 Sum_probs=58.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC------CcCceEEEEecCHHHHHHHH-hc---CCC-------
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG------ECGGTAYVTFSNAYALETAV-LL---SGA------- 66 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~------~~~~~AfV~F~~~~aA~tAl-~L---ng~------- 66 (242)
..++|||+|||+.+|+++|+++|+.||+|. +.++.+. ...+||||+|.++++|+.|+ .| ||.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~ 85 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSS 85 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccC
Confidence 457999999999999999999999999999 7777553 23579999999999999994 45 554
Q ss_pred -eecCeeEEEEec
Q 026192 67 -TIVDQPVCIIRW 78 (242)
Q Consensus 67 -~l~g~~I~V~~a 78 (242)
.+.++.+.|.||
T Consensus 86 ~~~~~~~~~v~p~ 98 (114)
T 2dnl_A 86 PTIKDKPVQIRPW 98 (114)
T ss_dssp SSSCSEEEEEECC
T ss_pred CCcCCCeeeccCC
Confidence 334455555544
No 157
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.2e-15 Score=115.54 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeec
Q 026192 2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIV 69 (242)
Q Consensus 2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~ 69 (242)
.+..++|||+|||+.+++++|+++|+.||.|.+ |.+..+.. ..++|||+|.++++|+.|+ .|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345689999999999999999999999999999 88887633 3469999999999999996 59999999
Q ss_pred CeeEEEEecCCCC
Q 026192 70 DQPVCIIRWGEYT 82 (242)
Q Consensus 70 g~~I~V~~a~~~~ 82 (242)
|+.|.|..+.+.+
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999775543
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.47 E-value=1.4e-13 Score=116.63 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=69.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+||++.+|+++|+++|+.||.|.+|+|+.+.+ ..++|||+|.++++|..|+ .|||..|+|++|.|..+.+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 46899999999999999999999999999999998754 3479999999999999995 7999999999999987643
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.47 E-value=2.1e-13 Score=113.63 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=70.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+||++.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.+.++|..|+ .|||..|+|+.|.|..+.+
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 47999999999999999999999999999999998743 2469999999999999995 6999999999999998765
Q ss_pred CCC
Q 026192 81 YTD 83 (242)
Q Consensus 81 ~~~ 83 (242)
.+.
T Consensus 205 ~~~ 207 (216)
T 2qfj_A 205 PPM 207 (216)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.47 E-value=6.2e-14 Score=112.43 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=68.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+.+||..|+|++|.|..+.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 36899999999999999999999999999999997643 3479999999999999998899999999999999764
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.6e-13 Score=108.04 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.++.+..+.. ..++|||+|.++++|..|+ .|||..|+|++|.|..+.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 357899999999999999999999999999999997743 2469999999999999995 699999999999998653
No 162
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=2.9e-13 Score=115.41 Aligned_cols=75 Identities=21% Similarity=0.334 Sum_probs=68.3
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLS-PNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs-~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+||+ +.+++++|+++|+.||.|.+|+++++. .++|||+|.++++|+.|+ .|||..|.|+.|.|..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~--~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK--PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS--TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 45899999999 799999999999999999999998653 579999999999999995 7999999999999997753
No 163
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=2.2e-13 Score=109.51 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=66.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-----cCceEEEEecCHHHHHHHH-hcCCCeec---CeeEE
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-----CGGTAYVTFSNAYALETAV-LLSGATIV---DQPVC 74 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-----~~~~AfV~F~~~~aA~tAl-~Lng~~l~---g~~I~ 74 (242)
..++|||+|||+.+|+++|+++|+.||+|.+|.++++.. ..++|||+|.++++|+.|+ .|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 468999999999999999999999999999999997753 2469999999999999995 79998876 67777
Q ss_pred EEecCC
Q 026192 75 IIRWGE 80 (242)
Q Consensus 75 V~~a~~ 80 (242)
+.+...
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 776543
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=2.4e-13 Score=113.36 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=65.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
++|||+|||+.+|+++|+++|+.||+|.+|.++.+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 6899999999999999999999999999999987642 3579999999999999996 499999999999997654
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=3.6e-13 Score=108.46 Aligned_cols=74 Identities=15% Similarity=0.286 Sum_probs=67.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|+|++|.|..+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 47899999999999999999999999999999998743 2469999999999999995 69999999999999865
No 166
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.44 E-value=2e-13 Score=113.23 Aligned_cols=75 Identities=23% Similarity=0.303 Sum_probs=68.7
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 5 GYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
.++|||+|||+ .+++++|+++|+.||.|.+|.+..+. .++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 47999999999 99999999999999999999999765 569999999999999996 59999999999999977543
No 167
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.44 E-value=3.3e-13 Score=112.77 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=66.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecC--eeEEEEecCCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVD--QPVCIIRWGEY 81 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a~~~ 81 (242)
.+|||+||++.+|+++|+++|+.||+|++|.|.... ..++|||+|.++++|+.| ..|||..|.| +.|+|..+...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 568999999999999999999999999999997543 346999999999999999 5799999965 99999977643
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=7.8e-13 Score=106.57 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=65.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCce-EEEEecCHHHHHHH-HhcCCCeecC--eeEEEEecCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGT-AYVTFSNAYALETA-VLLSGATIVD--QPVCIIRWGE 80 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~-AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a~~ 80 (242)
..|||+||++.+|+++|+++|+.||+|.+|.+.... .++ |||+|.++++|..| ..|||..|.| +.|+|..+..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 568999999999999999999999999999988643 356 99999999999999 6999999988 8999987654
No 169
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.43 E-value=5.4e-13 Score=107.42 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=67.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccC----C-------CceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCee
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHC----G-------DPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQP 72 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~----G-------~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~ 72 (242)
..++|||+|||+.+|+++|+++|+.| | .|.++.+.++ .++|||+|.++++|..|+.|||..|.|++
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---TTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---CCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 45899999999999999999999999 7 7888877654 57999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 026192 73 VCIIRWGEYT 82 (242)
Q Consensus 73 I~V~~a~~~~ 82 (242)
|.|....+..
T Consensus 80 i~v~~~~~~~ 89 (172)
T 2g4b_A 80 LKIRRPHDYQ 89 (172)
T ss_dssp CEEECCSSCC
T ss_pred eeecCCcccC
Confidence 9999765543
No 170
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.5e-13 Score=107.16 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=65.5
Q ss_pred CcEEEE--eCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee-----cCeeEEEE
Q 026192 5 GYVAEV--VGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI-----VDQPVCII 76 (242)
Q Consensus 5 ~~tV~V--sNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l-----~g~~I~V~ 76 (242)
.++||| +||++.++|++|+++|+.||.|.+|.|..+ .+||||+|.++++|+.| ..|||..| .|++|.|.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 368999 669999999999999999999999998753 46999999999999999 57999999 68899998
Q ss_pred ecCCC
Q 026192 77 RWGEY 81 (242)
Q Consensus 77 ~a~~~ 81 (242)
.+.+.
T Consensus 102 ~a~~~ 106 (114)
T 2cq2_A 102 FVEKV 106 (114)
T ss_dssp EESCC
T ss_pred ecccC
Confidence 77543
No 171
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.42 E-value=3.7e-13 Score=107.90 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=65.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+|||+.+|+++|+++|+.||.|.+|.++++.. ..++|||+|.++++|..|+. ++..|.|+.|.|..+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEccccccc
Confidence 47999999999999999999999999999999997643 34799999999999999976 4788999999888653
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=1e-12 Score=104.80 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=64.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCce-EEEEecCHHHHHHH-HhcCCCeecC--eeEEEEecCCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGT-AYVTFSNAYALETA-VLLSGATIVD--QPVCIIRWGEY 81 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~-AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a~~~ 81 (242)
..|||+||++.+|+++|+++|+.||.|.+|.|... .++ |||+|.++++|..| ..|||..|.| +.|.|..+.+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 34789999999999999999999999999999753 375 99999999999999 5899999987 68999876543
No 173
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=1.1e-12 Score=107.96 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 348999999999999999999999999999999998743 2469999999999999995 699999999999999764
Q ss_pred C
Q 026192 80 E 80 (242)
Q Consensus 80 ~ 80 (242)
+
T Consensus 193 ~ 193 (198)
T 2yh0_A 193 V 193 (198)
T ss_dssp C
T ss_pred C
Confidence 3
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.41 E-value=8.2e-13 Score=115.36 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=70.0
Q ss_pred CcEEEEeCCCCCCCHHHHH----HHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIH----EFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLr----efFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+||++.+|+++|+ ++|+.||.|.+|.+.+.+...++|||+|.+.++|..|+ .|||..|.|+.|.|..+.
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 4799999999999999977 89999999999999986656689999999999999996 999999999999999775
Q ss_pred CC
Q 026192 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
..
T Consensus 89 ~~ 90 (282)
T 3pgw_A 89 TD 90 (282)
T ss_pred cC
Confidence 43
No 175
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=5.1e-13 Score=114.39 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+ .+++++|+++|+.||.|.+|.+.++. .++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 457999999999 99999999999999999999999865 579999999999999996 69999999999999977543
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=9.3e-13 Score=101.00 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=63.1
Q ss_pred CCcEEEEeCCCCCCCHHH----HHHHhccC-CCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEe
Q 026192 4 GGYVAEVVGLSPNATEKD----IHEFFSHC-GDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIR 77 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~d----LrefFs~~-G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~ 77 (242)
..++|||+|||.++++++ |+++|+.| |+|.+|. .++|||.|.+.++|..| ..|||..|.|++|+|..
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 334599999999999988 55899999 5999992 38999999999999999 58999999999999998
Q ss_pred cCCCCC
Q 026192 78 WGEYTD 83 (242)
Q Consensus 78 a~~~~~ 83 (242)
+....+
T Consensus 81 A~~~sd 86 (96)
T 2diu_A 81 TPKNRE 86 (96)
T ss_dssp SCCSCC
T ss_pred cCCCcc
Confidence 765444
No 177
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.41 E-value=5.9e-13 Score=116.85 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=68.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+.+|+++|+++|+.||+|.+|.|.++.. ..++|||+|.++++|..|+.|||..|.|+.|.|.++.
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 457999999999999999999999999999999998644 3579999999999999999999999999999998764
No 178
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.40 E-value=9.7e-13 Score=108.22 Aligned_cols=77 Identities=21% Similarity=0.247 Sum_probs=66.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccC----C-------CceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCee
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHC----G-------DPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQP 72 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~----G-------~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~ 72 (242)
..++|||+|||+.+|+++|+++|+.| | .|.++.+.+. .++|||+|.++++|+.|+.|||..|.|++
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~---~g~afV~F~~~~~A~~Al~l~g~~~~g~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT---TTEEEEEESCSHHHHHHGGGTTEEETTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC---CCEEEEEeCCHHHHHHHHHhcCCEEcCce
Confidence 34899999999999999999999999 5 6777776533 57999999999999999999999999999
Q ss_pred EEEEecCCCCC
Q 026192 73 VCIIRWGEYTD 83 (242)
Q Consensus 73 I~V~~a~~~~~ 83 (242)
|.|..+.+...
T Consensus 80 i~v~~~~~~~~ 90 (198)
T 2yh0_A 80 LKIRRPHDYQP 90 (198)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99998766543
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.40 E-value=8.3e-13 Score=107.01 Aligned_cols=74 Identities=27% Similarity=0.326 Sum_probs=65.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+|+++|+++|+.||.|..+ ...+...++|||+|.++++|..|+ .|||..|+|+.|.|..+.+
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 4799999999999999999999999999887 333344579999999999999995 5999999999999997653
No 180
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.1e-12 Score=106.20 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=63.1
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecC----HHH----HHHH-H--hcCCCe
Q 026192 6 YVAEVVGL----SPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSN----AYA----LETA-V--LLSGAT 67 (242)
Q Consensus 6 ~tV~VsNL----s~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~----~~a----A~tA-l--~Lng~~ 67 (242)
..|||+|| |+.++|.+|+++|+.||+|.+++++.|+++ .+||||+|.+ +.. |.+| . .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 48999999 999999999999999999999999999775 4799999996 433 7778 4 589999
Q ss_pred ecCeeEEEEe
Q 026192 68 IVDQPVCIIR 77 (242)
Q Consensus 68 l~g~~I~V~~ 77 (242)
|+|+.|+|..
T Consensus 83 I~Gr~irV~l 92 (136)
T 2j8a_A 83 IMGFKFEVIL 92 (136)
T ss_dssp ETTEEEEEEE
T ss_pred ecCcEEEEEE
Confidence 9999999985
No 181
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.38 E-value=1.3e-12 Score=123.58 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=68.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
++|||+|||+.+|+++|++||+.||.|..|.|+.+.. ..+||||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 6999999999999999999999999999999987632 3579999999999999996 8999999999999997754
No 182
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.37 E-value=1.3e-12 Score=104.98 Aligned_cols=74 Identities=26% Similarity=0.349 Sum_probs=65.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecC---eeEEEEec
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVD---QPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g---~~I~V~~a 78 (242)
.++|||+|||+.+|+++|+++|+.||.|.+|.+.++.. ..++|||+|.++++|..|+ .|||..+.+ ++|.|..+
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 47899999999999999999999999999999997643 2469999999999999995 999988763 89999854
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.37 E-value=1.6e-12 Score=113.55 Aligned_cols=74 Identities=24% Similarity=0.311 Sum_probs=67.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|||+.+|+++|+++|+.||.|.+|.+.++ .++|||+|.++++|..|+ .|||..|.|+.|.|..+.+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 3479999999999999999999999999999999754 479999999999999996 5999999999999997643
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=2.1e-12 Score=101.59 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=64.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
..++|||+|| .+|+++|+++|+.||.|.+|.+.. ..++|||+|.+.++|..|+ .|||..|.|+.|.|..+.+
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~---~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP---PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET---TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 3479999995 699999999999999999999973 3579999999999999995 8999999999999997654
No 185
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.37 E-value=2.3e-12 Score=103.11 Aligned_cols=74 Identities=20% Similarity=0.295 Sum_probs=66.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecC--eeEEEEe
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVD--QPVCIIR 77 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g--~~I~V~~ 77 (242)
..++|+|+|||+.+++++|+++|+.||.|.++.+.++.. ..++|||+|.++++|..|+ .|||..|.| ++|.|..
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 347999999999999999999999999999999998753 2369999999999999995 699999987 9999874
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.37 E-value=1.4e-12 Score=114.38 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCC----cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026192 4 GGYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGE----CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 4 ~~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~----~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a 78 (242)
..++|||+|||+. +++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+.|||..|+|++|.|..+
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLA 288 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEEC
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEe
Confidence 3479999999999 99999999999999999999997632 357999999999999999999999999999999976
Q ss_pred CC
Q 026192 79 GE 80 (242)
Q Consensus 79 ~~ 80 (242)
.+
T Consensus 289 ~~ 290 (292)
T 2ghp_A 289 DK 290 (292)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=9.9e-13 Score=106.56 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEe--ecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~--~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~ 81 (242)
..++|||+|||+.+|+++|+++|+.||.|..+.+. ..+...++|||+|.++++|..|+.|||..|.|++|.|..+.+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCc
Confidence 45899999999999999999999999987663332 2233457999999999999999999999999999999977543
No 188
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.33 E-value=3.8e-12 Score=101.32 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=64.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCee--EEEE
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQP--VCII 76 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~--I~V~ 76 (242)
.++|+|+|||+.+++++|+++|+.||.|.++.+..+.. ..++|||+|.++++|..|+ .|||..|.|+. |.|.
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 47899999999999999999999999999999997643 2479999999999999995 69999999975 6665
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.33 E-value=4.8e-12 Score=110.46 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=66.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeec-CeeEEEEec
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIV-DQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~-g~~I~V~~a 78 (242)
.++|||+||++.+++++|+++|+.||.|.+|.+..+. .++|||+|.+.++|..|+ .|||..|+ |+.|.|..+
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 4789999999999999999999999999999999654 469999999999999995 69999999 999999854
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=8.8e-12 Score=96.05 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=64.6
Q ss_pred CcEEEEeCCCCCCC-----------HHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCee
Q 026192 5 GYVAEVVGLSPNAT-----------EKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQP 72 (242)
Q Consensus 5 ~~tV~VsNLs~~~T-----------E~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~ 72 (242)
.++|+|.||..... +++|+++|+.||+|.+|.| .+....++|||+|.++++|..|+ .|||..|+|++
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 47899999955433 6899999999999999966 45556689999999999999995 89999999999
Q ss_pred EEEEecCC
Q 026192 73 VCIIRWGE 80 (242)
Q Consensus 73 I~V~~a~~ 80 (242)
|.|..+.+
T Consensus 94 l~v~~a~~ 101 (112)
T 2dit_A 94 ITAQAWDG 101 (112)
T ss_dssp CEEEECCS
T ss_pred EEEEEeCC
Confidence 99998754
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.33 E-value=8.3e-12 Score=109.07 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
+..++|||+|||+.+|+++|+++|+.||.|.+|.++.+.. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4567999999999999999999999999999999987643 3469999999999999996 99999999999999987
Q ss_pred CCCC
Q 026192 79 GEYT 82 (242)
Q Consensus 79 ~~~~ 82 (242)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 5543
No 192
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.33 E-value=7.1e-12 Score=96.63 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=65.6
Q ss_pred CCcEEEEeCCCC-----CCCHHHHHHHhccCCCceEEEEeecC----CcCceEEEEecCHHHHHHH-HhcCCCeecCeeE
Q 026192 4 GGYVAEVVGLSP-----NATEKDIHEFFSHCGDPVHVEIIRSG----ECGGTAYVTFSNAYALETA-VLLSGATIVDQPV 73 (242)
Q Consensus 4 ~~~tV~VsNLs~-----~~TE~dLrefFs~~G~I~~V~l~~~~----~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I 73 (242)
..++|+|.||.. .-++++|++.|+.||+|.+|.|.++. ...+++||+|.++++|..| ..|||..++|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 347999999963 34799999999999999999999763 2357999999999999999 5899999999999
Q ss_pred EEEecC
Q 026192 74 CIIRWG 79 (242)
Q Consensus 74 ~V~~a~ 79 (242)
.|..+.
T Consensus 87 ~v~~a~ 92 (105)
T 2pe8_A 87 KACFYN 92 (105)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999764
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=2.6e-12 Score=113.19 Aligned_cols=75 Identities=21% Similarity=0.188 Sum_probs=66.9
Q ss_pred CCcEEEEeCCCCCC---------CHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee-----
Q 026192 4 GGYVAEVVGLSPNA---------TEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI----- 68 (242)
Q Consensus 4 ~~~tV~VsNLs~~~---------TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l----- 68 (242)
..++|||+||++.+ +|++|+++|+.||+|++|.++.+ .++|||+|.+.++|+.| ..|+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 45899999999998 79999999999999999999864 47999999999999999 58999999
Q ss_pred -------cCeeEEEEecCCC
Q 026192 69 -------VDQPVCIIRWGEY 81 (242)
Q Consensus 69 -------~g~~I~V~~a~~~ 81 (242)
.|+.|.|.-+.+.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTGGGGGGSCCCEEEECC--
T ss_pred ccccccCCCCEEEEEEccCC
Confidence 8999999876543
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.31 E-value=4.9e-12 Score=104.77 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=66.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCC-CceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeec-CeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCG-DPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIV-DQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~-g~~I~V~~a~ 79 (242)
.++|||+|||+.+++++|+++|+.|| .|.+|.+..++ .++|||+|.++++|..|+ .|||..|+ |+.|.|..+.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 57899999999999999999999999 99999997643 479999999999999995 69999999 9999998764
No 195
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.30 E-value=1.1e-11 Score=108.41 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=67.4
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026192 5 GYVAEVVGLSPNA-TEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~-TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+|||+.+ ++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|+|++|.|..+.
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence 4799999999995 9999999999999999999987632 3479999999999999995 699999999999999763
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.27 E-value=1.6e-11 Score=105.03 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=66.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCC-CceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeec-CeeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCG-DPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIV-DQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~-g~~I~V~~a~ 79 (242)
.++|||+|||+.+++++|+++|+.|| .|.+|.+...+ .++|||+|.+.++|..|+ .|||..|+ |+.|.|..+.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS--TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC--CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 57999999999999999999999999 99999997532 469999999999999995 69999999 9999998764
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.24 E-value=1.2e-11 Score=105.32 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=60.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCc--eEEEEeecCC-cCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDP--VHVEIIRSGE-CGGTAYVTFSNAYALETA-VLLSGATIVDQ 71 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I--~~V~l~~~~~-~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~ 71 (242)
.++|||+|||+.+|+++|+++|+.||.| .+|++..+.+ .+++|||+|.+.++|..| ..|||..|.|.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 3689999999999999999999999999 8999987643 347999999999999999 58999999886
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.18 E-value=5.2e-11 Score=103.84 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=66.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-Hhc-CCCeec---CeeEEEE
Q 026192 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLL-SGATIV---DQPVCII 76 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~L-ng~~l~---g~~I~V~ 76 (242)
..++|||+|||+.+|+++|+++|+.||.|.+|.++.+.. ..++|||+|.+.++|..| ..| +|..+. +++|.|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~ 174 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVE 174 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEe
Confidence 347999999999999999999999999999999997732 247999999999999999 467 555555 9999999
Q ss_pred ecCCC
Q 026192 77 RWGEY 81 (242)
Q Consensus 77 ~a~~~ 81 (242)
++...
T Consensus 175 ~~~~~ 179 (261)
T 3sde_A 175 PMEQF 179 (261)
T ss_dssp ECCCE
T ss_pred ecccc
Confidence 87654
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.14 E-value=1.1e-11 Score=95.17 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=56.7
Q ss_pred EeCCCCCCCHHHHHHHh------------ccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEE
Q 026192 10 VVGLSPNATEKDIHEFF------------SHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVC 74 (242)
Q Consensus 10 VsNLs~~~TE~dLrefF------------s~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~ 74 (242)
+.||++.+++++|+++| +.||+|.+|.|.++.. ..++|||+|.++++|..| ..|||..++|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 44555566777777666 9999999999997643 347999999999999999 57999999999999
Q ss_pred EEec
Q 026192 75 IIRW 78 (242)
Q Consensus 75 V~~a 78 (242)
|..+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9754
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=6.5e-10 Score=85.19 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=59.1
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026192 5 GYVAEVVGLS-------PNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR 77 (242)
Q Consensus 5 ~~tV~VsNLs-------~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~ 77 (242)
.+.|.|.-.. +.+++++|+++|+.||+|.+|.|+. ...+||||+|.++++|+.|+.. +..+.|++|.|..
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~ 86 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--KKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISW 86 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--SSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEEC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--CCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEE
Confidence 3567776554 5689999999999999999999983 3457999999999999999643 4447899999986
Q ss_pred cCC
Q 026192 78 WGE 80 (242)
Q Consensus 78 a~~ 80 (242)
+.+
T Consensus 87 a~~ 89 (100)
T 2d9o_A 87 LEG 89 (100)
T ss_dssp SSC
T ss_pred ccC
Confidence 543
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.11 E-value=1.6e-10 Score=88.87 Aligned_cols=74 Identities=19% Similarity=0.235 Sum_probs=63.1
Q ss_pred cEEEEeCCCC--CCC--------HHHHHHHhccCCCceEEEEeecCC-----cCceEEEEecCHHHHHHH-HhcCCCeec
Q 026192 6 YVAEVVGLSP--NAT--------EKDIHEFFSHCGDPVHVEIIRSGE-----CGGTAYVTFSNAYALETA-VLLSGATIV 69 (242)
Q Consensus 6 ~tV~VsNLs~--~~T--------E~dLrefFs~~G~I~~V~l~~~~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~ 69 (242)
+.|.+.|+-. ... +++|++.|+.||+|.+|.|.++.. ..+++||+|.++++|..| ..|||..++
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~ 85 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFA 85 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 6899999832 332 479999999999999999987642 347999999999999999 699999999
Q ss_pred CeeEEEEecC
Q 026192 70 DQPVCIIRWG 79 (242)
Q Consensus 70 g~~I~V~~a~ 79 (242)
|+.|.|..+.
T Consensus 86 GR~i~v~~~~ 95 (105)
T 3v4m_A 86 NRVVVTKYCD 95 (105)
T ss_dssp TEECEEEEEC
T ss_pred CCEEEEEEeC
Confidence 9999998763
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.05 E-value=5.9e-10 Score=87.78 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=63.9
Q ss_pred CcEEEEeCCCC-----CCCHHHHHHHhccCCCceEEEEeecCC-------cCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026192 5 GYVAEVVGLSP-----NATEKDIHEFFSHCGDPVHVEIIRSGE-------CGGTAYVTFSNAYALETA-VLLSGATIVDQ 71 (242)
Q Consensus 5 ~~tV~VsNLs~-----~~TE~dLrefFs~~G~I~~V~l~~~~~-------~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~ 71 (242)
.++|++.|+-. .--++||++.|+.||+|.+|.|.++.. ..+++||+|.++++|..| ..|||..++|+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 37899999942 124799999999999999999997632 126999999999999999 69999999999
Q ss_pred eEEEEecC
Q 026192 72 PVCIIRWG 79 (242)
Q Consensus 72 ~I~V~~a~ 79 (242)
.|.|..+.
T Consensus 100 ~i~v~~~~ 107 (118)
T 3ue2_A 100 KVVAEVYD 107 (118)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEcC
Confidence 99999763
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=6.6e-10 Score=88.47 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=63.0
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecC-HHHHHHH-Hhc--CCCeecCeeEEEEe
Q 026192 3 AGGYVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSN-AYALETA-VLL--SGATIVDQPVCIIR 77 (242)
Q Consensus 3 ~~~~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~-~~aA~tA-l~L--ng~~l~g~~I~V~~ 77 (242)
+.++.|+|+||++. +++++|+++|+.||+|.+|.+.++.. +|||.|.+ +.+|..| ..| +|.+|.|..+++..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 45689999999999 99999999999999999999987654 79999999 6788877 566 47789998888875
Q ss_pred c
Q 026192 78 W 78 (242)
Q Consensus 78 a 78 (242)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.97 E-value=9e-10 Score=101.63 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=60.2
Q ss_pred CcEEEEeC--CCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeec---Ce--eEEEE
Q 026192 5 GYVAEVVG--LSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIV---DQ--PVCII 76 (242)
Q Consensus 5 ~~tV~VsN--Ls~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~---g~--~I~V~ 76 (242)
..+|||+| |++.+||++|+++|+.||+|.+|.+.. .++||||+|.+.++|+.| ..|||..+. |+ .+.|.
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 36999999 588999999999999999999998865 247999999999999999 689999984 34 45555
Q ss_pred ec
Q 026192 77 RW 78 (242)
Q Consensus 77 ~a 78 (242)
..
T Consensus 95 ~~ 96 (345)
T 3tht_A 95 FV 96 (345)
T ss_dssp EC
T ss_pred Ee
Confidence 44
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=2.8e-09 Score=80.89 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=63.3
Q ss_pred CCCCCcEEEEeCCCC----CCCH----HHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCee
Q 026192 1 MYAGGYVAEVVGLSP----NATE----KDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQP 72 (242)
Q Consensus 1 M~~~~~tV~VsNLs~----~~TE----~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~ 72 (242)
|-|-+.||.|.-.+. +.-+ .+|.+.|+.||+|..+++..+. +||+|.+.++|..|+.|||..++|+.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 345568999998773 4444 6788999999999999999753 89999999999999889999999999
Q ss_pred EEEEecC
Q 026192 73 VCIIRWG 79 (242)
Q Consensus 73 I~V~~a~ 79 (242)
|+|....
T Consensus 78 LkV~lkt 84 (91)
T 2dnr_A 78 ITIALKS 84 (91)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999765
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.95 E-value=3.4e-09 Score=82.97 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=61.8
Q ss_pred cEEEEeCCCCCC----------CHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEE
Q 026192 6 YVAEVVGLSPNA----------TEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVC 74 (242)
Q Consensus 6 ~tV~VsNLs~~~----------TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~ 74 (242)
++|.+.|+=..- -++||++.|+.||.|.+|.+.++. ..+++||+|.++++|..| ..|||..++|+.|.
T Consensus 8 ~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~ 86 (114)
T 3s6e_A 8 QCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT 86 (114)
T ss_dssp SEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 678999984322 245889999999999999997654 357999999999999999 68999999999999
Q ss_pred EEecC
Q 026192 75 IIRWG 79 (242)
Q Consensus 75 V~~a~ 79 (242)
|..+.
T Consensus 87 v~~~~ 91 (114)
T 3s6e_A 87 AAYVP 91 (114)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 98763
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.9e-08 Score=76.86 Aligned_cols=73 Identities=18% Similarity=0.121 Sum_probs=62.0
Q ss_pred CCCCCcEEEEeCCCCC-----CCH----HHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCe
Q 026192 1 MYAGGYVAEVVGLSPN-----ATE----KDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQ 71 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~-----~TE----~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~ 71 (242)
|-|-+.||.|.-+++. .-+ .+|.+.|+.||.|..+++..+. +||+|.+.++|..|+.|||..++|+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 3455689999998753 323 5688999999999999999653 9999999999999988999999999
Q ss_pred eEEEEec
Q 026192 72 PVCIIRW 78 (242)
Q Consensus 72 ~I~V~~a 78 (242)
.|+|..-
T Consensus 86 ~L~V~~k 92 (95)
T 1ufw_A 86 AVKISGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999853
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.27 E-value=1.5e-06 Score=73.56 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=54.8
Q ss_pred CCHHHHHHHhccCCCceEEEEeecCC-------cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026192 17 ATEKDIHEFFSHCGDPVHVEIIRSGE-------CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 17 ~TE~dLrefFs~~G~I~~V~l~~~~~-------~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~ 79 (242)
-.+++|++.|+.||+|.++.+.++.. ..+++||+|.+.++|.+| ..|||..++||.|.+..+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 45789999999999999999985422 236999999999999999 6999999999999998763
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=3.8e-06 Score=65.89 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=65.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccC-----CCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHC-----GDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~-----G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
.++|-+=|||..+++..||.|...+ |.|..|.|..+- +-|.|+|.|...|-+| |.|||.+|.|+.|++...
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH---~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF---NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT---TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC---CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 5899999999999999999999999 999999999764 5799999999999999 899999999999999743
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=2.5e-05 Score=60.38 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=63.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhcc-----CCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEe
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSH-----CGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIR 77 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~-----~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~ 77 (242)
+...+|.|.|||+.+.++.|+-||.. =|.|.+|+... +.|+|+|.++..+++.|.-..+.|.+.+|.|.|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 34579999999999999999999976 26899988863 589999999999999988888999999999998
Q ss_pred cCC
Q 026192 78 WGE 80 (242)
Q Consensus 78 a~~ 80 (242)
+.+
T Consensus 81 ~~~ 83 (104)
T 2dhx_A 81 APP 83 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 744
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=0.00014 Score=57.57 Aligned_cols=71 Identities=11% Similarity=0.112 Sum_probs=60.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecC-eeEEEEecC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVD-QPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g-~~I~V~~a~ 79 (242)
.+.|.|-+.++.. -..|-++|+.||.|.+.... ....+-.|.|.++.+|++||..||..|+| .-|-|.++.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 4689999999985 66777889999999998872 22469999999999999999999999985 778888864
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.47 E-value=0.00094 Score=51.57 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=63.0
Q ss_pred CCCcEEEEeCCCCCC-CH----HHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026192 3 AGGYVAEVVGLSPNA-TE----KDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~-TE----~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
...++++|+||++.+ .. +.+++.|..++++.+..+.+. .+-.-|.|.++++|..| +.|++..+.|..++|-
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 345799999998866 32 567899999999999888754 35789999999999999 8999999999999998
Q ss_pred ecC
Q 026192 77 RWG 79 (242)
Q Consensus 77 ~a~ 79 (242)
-+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 665
No 213
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.37 E-value=0.00017 Score=57.90 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=57.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceE-EEEeec--------------CC--cCceEEEEecCHHHHHHHHhcCC
Q 026192 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVH-VEIIRS--------------GE--CGGTAYVTFSNAYALETAVLLSG 65 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~-V~l~~~--------------~~--~~~~AfV~F~~~~aA~tAl~Lng 65 (242)
.++..|.|=+.|+. ....+-+.|+.||.|.+ +...+. +. ...+-.|+|.++.+|.+||..||
T Consensus 5 ~~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG 83 (132)
T 3p3d_A 5 NGELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENG 83 (132)
T ss_dssp ---CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTT
T ss_pred cCceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCC
Confidence 34568999999665 45667778999999976 322210 00 13588999999999999999999
Q ss_pred CeecCeeEEEEecCC
Q 026192 66 ATIVDQPVCIIRWGE 80 (242)
Q Consensus 66 ~~l~g~~I~V~~a~~ 80 (242)
..|+|.-|-|.|+.+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999999998853
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.85 E-value=0.0055 Score=46.02 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=54.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-----cCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-----CGGTAYVTFSNAYALETA-VLLSGATIVDQ 71 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~ 71 (242)
..|-|.+|||..||+++.+.++...++........+- ....|||.|.+++.+..- ..++|+.+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4789999999999999999999998877777664332 124899999999888877 79999988654
No 215
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.92 E-value=0.0042 Score=59.28 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=43.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcC
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLS 64 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Ln 64 (242)
.++|+|. .++.+++++|.++|+.||+|.++-+-.+. +.||.|+|.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHhcc
Confidence 3789998 79999999999999999999999887644 369999999999999775443
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.82 E-value=0.023 Score=43.36 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=48.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHh-cCCCeecCeeEEEEecCCC
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL-LSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~-Lng~~l~g~~I~V~~a~~~ 81 (242)
+.+++ +.|+++...||.+.|+.||. ..|+.+.| ..|||.|.+++.|..|+. ++ .+...+|..+.++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~~i~----k~~~y~i~ty~e~ 83 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVQIAVNTSK----YAESYRIQTYAEY 83 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET----TEEEEECSCHHHHHHHHHHHH----HCCSSEEEEHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHHhcc----cCCceEEEEhHHh
Confidence 44555 99999999999999999994 45666654 379999999999999864 32 1334555555443
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.17 E-value=0.03 Score=42.84 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=42.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHh
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL 62 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~ 62 (242)
+.++| +.|+++...||.+.|+.||. ..|+.+.| ..|||.|.+++.|..|+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET----TEEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHH
Confidence 34555 99999999999999999993 45666654 379999999999999964
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.36 E-value=0.049 Score=41.39 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=45.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-----cCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026192 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-----CGGTAYVTFSNAYALETA-VLLSGATIVDQ 71 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~ 71 (242)
-.|-|.+|||..||+++.+-++..=++........+- ....|||.|.+++.+..- ..++|..+.+.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 3689999999999999777665543322222111111 124799999999998887 78999988653
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.03 E-value=3.5 Score=39.25 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=41.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH
Q 026192 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl 61 (242)
...++|+ +++.+...+|.+.|+.||. .+|..+.+ ..|||.|.+++.+..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd----t~a~V~~~~~~~a~~~l 490 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVQIAV 490 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS----SEEEEECSCHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC----CeEEEEECCHHHHHHHH
Confidence 3556666 8999999999999999995 45655532 47999999999999984
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=79.38 E-value=1.4 Score=34.13 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=25.0
Q ss_pred EEEEeecCCc-CceEEEEecCHHHHHHHH-hcCCC
Q 026192 34 HVEIIRSGEC-GGTAYVTFSNAYALETAV-LLSGA 66 (242)
Q Consensus 34 ~V~l~~~~~~-~~~AfV~F~~~~aA~tAl-~Lng~ 66 (242)
++.|..++.. .+++||+|.+++.|+.|+ .+++.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhccc
Confidence 4666666553 479999999999999994 55543
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=66.01 E-value=3.3 Score=31.96 Aligned_cols=36 Identities=8% Similarity=-0.080 Sum_probs=31.2
Q ss_pred CceEEEEecCHHHHHHH-Hhc-CCCeecCeeEEEEecCC
Q 026192 44 GGTAYVTFSNAYALETA-VLL-SGATIVDQPVCIIRWGE 80 (242)
Q Consensus 44 ~~~AfV~F~~~~aA~tA-l~L-ng~~l~g~~I~V~~a~~ 80 (242)
.++++|+|.+++.|+.| ..+ ||..|+| .|.+..+..
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 46899999999999999 478 9999999 999986543
No 222
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.73 E-value=46 Score=27.36 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=41.6
Q ss_pred cEEEEeCCCC-C--------CCHHHHHHHh--ccCCCceEEEEeecCCcCceEEEEecCH-HHHHHHHhcC
Q 026192 6 YVAEVVGLSP-N--------ATEKDIHEFF--SHCGDPVHVEIIRSGECGGTAYVTFSNA-YALETAVLLS 64 (242)
Q Consensus 6 ~tV~VsNLs~-~--------~TE~dLrefF--s~~G~I~~V~l~~~~~~~~~AfV~F~~~-~aA~tAl~Ln 64 (242)
-++.|-|++. . -+..+|++.| +.|.++.-.-+....+..+++.|.|.+. .....|+.|.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHH
Confidence 3688999987 2 3457999977 8888877555555555567999999865 5566665543
No 223
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=33.12 E-value=16 Score=20.93 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=16.8
Q ss_pred HhhccceecHHHHHHHHHhhhh
Q 026192 126 MIAKGYVLSKDALVKAKALDES 147 (242)
Q Consensus 126 ~LA~Gyvl~~~ai~kA~~~Dek 147 (242)
+-.-||.||..+|.--+.|-+|
T Consensus 4 LNSAGYLLGp~~id~h~s~~dK 25 (27)
T 1smz_A 4 LNSAGYLLGKINLKALAALAKK 25 (27)
T ss_dssp HHHHTTTTTTTHHHHHHHHHHH
T ss_pred ccccceeeccccchhhhhhhhh
Confidence 4567999999988877777544
No 224
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=23.04 E-value=1.4e+02 Score=23.50 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=36.0
Q ss_pred HHHHhh--ccceecHH---HHHHHHHhhhhcCCcHHHHHHHHhhhhcccc
Q 026192 123 VKTMIA--KGYVLSKD---ALVKAKALDESYGLSASAAAKVAELSNRIGL 167 (242)
Q Consensus 123 va~~LA--~Gyvl~~~---ai~kA~~~Dekh~~ss~~~~~v~~~d~k~g~ 167 (242)
+|..|| -|..|.++ .|+-.++|=++||++....-.+..+.+++|.
T Consensus 50 vA~~lA~~EgIeLTe~HWeVI~flR~fY~e~~~sP~iR~L~K~~~~~~g~ 99 (132)
T 1yx3_A 50 VADVMAKQDNLELTEEHWDIINFLREYYEEYQIAPAVRVLTKAVGKKLGK 99 (132)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHhCc
Confidence 555555 68899987 7888999999999998887777778777763
No 225
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.48 E-value=1.3e+02 Score=21.69 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=36.0
Q ss_pred EEEeCCCCCCCHHHHHHHhc-cCC-CceEEEEeecCCcCceEEEEecCHHHHH
Q 026192 8 AEVVGLSPNATEKDIHEFFS-HCG-DPVHVEIIRSGECGGTAYVTFSNAYALE 58 (242)
Q Consensus 8 V~VsNLs~~~TE~dLrefFs-~~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~ 58 (242)
-++-.+.+.++..+|++.+. .|| ++..|..+.-+...+.|||++...+.+.
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~ 77 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSAS 77 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHH
Confidence 45555678999999998775 355 6778877654433468999998765444
Done!