BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026193
         (242 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
          Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 27 TPRKLVECRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
          TP     CRIC  E D +S + TPC C GSL + H+ C+Q+W        CE+C+ +F
Sbjct: 11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 33.5 bits (75), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 79
          C IC +E  +      C C G L+  HR C+  W     NT C+IC
Sbjct: 9  CWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQIC 53


>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
          Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
          Northeast Structural Genomics Consortium (Nesg) Target
          Hr4710b
          Length = 91

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 34 CRICQDE--DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85
          C IC  E    D   E PC       Y H+ CV  W  + G  TC +C+  F P
Sbjct: 43 CPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKSG--TCPVCRCMFPP 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,441,364
Number of Sequences: 62578
Number of extensions: 244965
Number of successful extensions: 542
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 6
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)