BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026193
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 34 CRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84
CR+C+ E A DS + PC C GS++Y H+ C+ W T CE+C+ +F+
Sbjct: 8 CRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFE 59
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 25 ISTPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
+ TP CRIC + N+ +PC C G+L H+ C+++W + + CE+C +F
Sbjct: 55 LDTPSDCPFCRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 10/61 (16%)
Query: 34 CRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGN--------TTCEICQQQF 83
CRICQ A S+ + PC C GSL+Y H+ C+++W K N TTCE+C+++
Sbjct: 553 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKL 612
Query: 84 K 84
+
Sbjct: 613 Q 613
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 27 TPRKLVECRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
TP CRIC E D +S + TPC C GSL + H+ C+Q+W CE+C+ +F
Sbjct: 69 TPSNQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 126
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 10/61 (16%)
Query: 34 CRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGN--------TTCEICQQQF 83
CRICQ A S+ + PC C GSL+Y H+ C+++W K N TTCE+C+++
Sbjct: 554 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKL 613
Query: 84 K 84
+
Sbjct: 614 Q 614
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 27 TPRKLVECRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85
TP CRIC E D +S + TPC C GSL + H+ C+Q+W CE+C+ +F
Sbjct: 73 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF-I 131
Query: 86 GYTAPPPLFQFGNIPMN 102
T PL ++ + M
Sbjct: 132 METKLKPLRKWEKLQMT 148
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 25 ISTPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
+ TP CRIC + ++ +PC C G+L H+ C++RW + + CE+C +F
Sbjct: 55 LETPSDGPFCRICHEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEF 113
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 27 TPRKLVECRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85
TP CRIC E D +S + TPC C GSL + H+ C+Q+W CE+C+ +F
Sbjct: 71 TPSNQDICRICHCEGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYEF-I 129
Query: 86 GYTAPPPLFQFGNIPMN 102
T PL ++ + M
Sbjct: 130 METKLKPLRKWEKLQMT 146
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 10/61 (16%)
Query: 34 CRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGN--------TTCEICQQQF 83
CRICQ A S+ + PC C GSL+Y H+ C+++W K N TTCE+C+++
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 84 K 84
+
Sbjct: 612 E 612
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPL 93
CRIC + N+ +PC C G+L H+ C+++W + + CE+C +F P PL
Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAV-EKRPRPL 122
Query: 94 FQFGNIP 100
++ P
Sbjct: 123 TEWLKDP 129
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 10/61 (16%)
Query: 34 CRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGN--------TTCEICQQQF 83
CRICQ A S+ + PC C GSL+Y H+ C+++W K N TTCE+C+++
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 84 K 84
+
Sbjct: 612 E 612
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 34 CRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQ--FKPGYTAP 90
CR+C+ E + + PC C GS+K+ H+ C+ +W CE+C+ + F P Y+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPD 68
Query: 91 PP 92
P
Sbjct: 69 MP 70
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 27 TPRKLVECRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85
TP CRIC E D +S + TPC C GSL + H+ C+Q+W CE+C+ +F
Sbjct: 46 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEF-I 104
Query: 86 GYTAPPPLFQFGNIPMN 102
T PL ++ + M
Sbjct: 105 METKLKPLRKWEKLQMT 121
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 27 TPRKLVECRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85
TP CRIC E D +S + TPC C GSL + H+ C+Q+W CE+C+ +F
Sbjct: 46 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEF-I 104
Query: 86 GYTAPPPLFQFGNIPMN 102
T PL ++ + M
Sbjct: 105 METKLKPLRKWEKLQMT 121
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 34 CRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQ--FKPGYTAP 90
CR+C+ E + + PC C GS+K+ H+ C+ +W CE+C+ + F P Y+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPD 68
Query: 91 PP 92
P
Sbjct: 69 MP 70
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPL 93
CRIC + + ++ +PC C G+L HR C++ W + + CE+C +F P PL
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAV-ERKPRPL 129
Query: 94 FQFGNIP 100
++ P
Sbjct: 130 VEWLRNP 136
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 79
C+IC + PC C GS++Y H+ C+ +W +E+G+ TCE+C
Sbjct: 166 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELC 211
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 79
C+IC + PC C GS++Y H+ C+ +W +E+G+ TCE+C
Sbjct: 168 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELC 213
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPL 93
CRIC + + ++ +PC C G+L HR C++ W + + CE+C +F P PL
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAV-ERKPRPL 129
Query: 94 FQFGNIP 100
++ P
Sbjct: 130 VEWLRNP 136
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPL 93
CRIC + + ++ +PC C G+L HR C++ W + + CE+C +F P PL
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAV-ERKPRPL 129
Query: 94 FQFGNIP 100
++ P
Sbjct: 130 VEWLRNP 136
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPL 93
CRIC + ++ +PC C G+L HR C++ W + + CE+C +F P PL
Sbjct: 70 CRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFSVE-RKPRPL 128
Query: 94 FQFGNIP 100
++ P
Sbjct: 129 VEWLRNP 135
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPL 93
CRIC + ++ +PC C G+L HR C++ W + + CE+C +F P PL
Sbjct: 69 CRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFSV-ERKPRPL 127
Query: 94 FQFGNIP 100
++ P
Sbjct: 128 VEWLRNP 134
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 79
C+IC + PC C GS++Y H+ C+ +W +E+G+ TCE+C
Sbjct: 170 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELC 215
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPL 93
CRIC + + ++ +PC C G+L HR C++ W + + CE+C +F P PL
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAV-ERKPRPL 129
Query: 94 FQFGNIP 100
++ P
Sbjct: 130 VEWLRNP 136
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 33 ECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84
+CRIC + +PC C GS++ H+ C+ RW +E+G+ +CE+C +++
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ 160
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 33 ECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84
+CRIC + +PC C GS++ H+ C+ RW +E+G+ +CE+C +++
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ 160
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 34 CRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
CR+C+ E + + PC C GS+K+ H+ C+ +W CE+C+ +F
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
CRIC + + +PC C G+L H+ C+++W + + CE+C +F
Sbjct: 64 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEF 113
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 34 CRICQDEDADSN-METPCSCCGSLKYAHRRCVQRWCNEK--------GNTTCEICQQ--Q 82
CRIC+ E + N + PC C GS+KY H C+ W K + C+IC Q
Sbjct: 39 CRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDICHYPIQ 98
Query: 83 FKPGYTAPPP 92
FK Y P
Sbjct: 99 FKTIYAENMP 108
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 34 CRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
CRIC E D +S + TPC C G+L++ H+ C+ +W CE+C+ F
Sbjct: 80 CRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 130
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 34 CRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
CRIC E D +S + TPC C G+L++ H+ C+ +W CE+C+ F
Sbjct: 80 CRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 130
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
CRIC + + +PC C G+L H+ C+++W + + CE+C +F
Sbjct: 64 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEF 113
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 25 ISTPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
+ TP CRIC + + +PC C G+L H+ C+++W + + CE+C +F
Sbjct: 55 LDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84
CRIC + +PC C GS++ H C+ +W +E+G+ +CE+C +++
Sbjct: 143 CRICFQGPEQGELLSPCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQ 193
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
CRIC + +PC C GS+K H+ C+ +W +E+G +CE+C ++
Sbjct: 163 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
CRIC + +PC C GS+K H+ C+ +W +E+G +CE+C ++
Sbjct: 162 CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 211
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 34 CRICQDEDADSNME---TPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83
CRIC + N E +PC C G+L H+ C+++W + + CE+C +F
Sbjct: 64 CRICHEGQDVCNSEGLLSPCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHTEF 116
>sp|Q6NYK8|MARH5_DANRE E3 ubiquitin-protein ligase MARCH5 OS=Danio rerio GN=march5 PE=2
SV=1
Length = 289
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 34 CRIC---QDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK------GNTTCEICQQQFK 84
C +C + ED + +PC C G K+ H+ C+QRW +EK G +C C +++
Sbjct: 12 CWVCFATEKEDRAAEWVSPCRCKGCTKWIHQSCLQRWLDEKQKGNSGGAVSCPQCGTEYR 71
Query: 85 PGYTAPPPLFQF 96
+ P+ F
Sbjct: 72 IVFPKMGPVVYF 83
>sp|Q6GM44|MARH5_XENLA E3 ubiquitin-protein ligase MARCH5 OS=Xenopus laevis GN=march5
PE=2 SV=1
Length = 283
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 34 CRIC---QDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEI 78
C +C ++D + PC C GS K+ H+ C+QRW +EK GN+T +
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARV 66
>sp|Q3KNM2|MARH5_MOUSE E3 ubiquitin-protein ligase MARCH5 OS=Mus musculus GN=March5 PE=2
SV=1
Length = 278
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 34 CRIC---QDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEI 78
C +C ++D + PC C GS K+ H+ C+QRW +EK GN+T +
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARV 63
>sp|Q9NX47|MARH5_HUMAN E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1
SV=1
Length = 278
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 34 CRIC---QDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEI 78
C +C ++D + PC C GS K+ H+ C+QRW +EK GN+T +
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARV 63
>sp|Q0X0A5|MARH5_CHLAE E3 ubiquitin-protein ligase MARCH5 OS=Chlorocebus aethiops
GN=MARCH5 PE=2 SV=1
Length = 278
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 34 CRIC---QDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEI 78
C +C ++D + PC C GS K+ H+ C+QRW +EK GN+T +
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARV 63
>sp|Q3ZC24|MARH5_BOVIN E3 ubiquitin-protein ligase MARCH5 OS=Bos taurus GN=MARCH5 PE=2
SV=1
Length = 278
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 34 CRIC---QDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEI 78
C +C ++D + PC C GS K+ H+ C+QRW +EK GN+T +
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARV 63
>sp|Q5ZJ41|MARH5_CHICK E3 ubiquitin-protein ligase MARCH5 OS=Gallus gallus GN=MARCH5
PE=2 SV=1
Length = 281
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 34 CRIC---QDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEI 78
C +C ++D + PC C GS K+ H+ C+QRW +EK GN+T +
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQTCLQRWVDEKQRGNSTARV 66
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
Query: 34 CRICQ---DEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNT--------TCEICQQ 81
CRICQ A+ +E PC C GSL++ H+ C+++W K + TCE+C+Q
Sbjct: 641 CRICQIAGGSPANPLLE-PCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMCKQ 698
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 34 CRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGNT--------TCEICQQ 81
CRICQ + + PC C GSL++ H+ C+++W K + TCE+C+Q
Sbjct: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
>sp|Q91T40|LAP_LSDV E3 ubiquitin-protein ligase LAP OS=Lumpy skin disease virus
GN=LW010 PE=3 SV=1
Length = 162
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 34 CRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPP 92
C IC+DE + +N C+C K H+ C++ W N NT C+IC ++
Sbjct: 11 CWICKDEYNVSTNF---CNCKNEFKIVHKNCLEEWINFSHNTKCKICNGKYNIKKNKKSC 67
Query: 93 L-----FQFGNIP 100
L F + N+P
Sbjct: 68 LRWKCSFMYCNVP 80
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84
C IC++E + + PC+C G L H +C+ W NT C++C+ ++
Sbjct: 15 CWICREEVGNEGIH-PCACTGELDVVHPQCLSTWLTVSRNTACQMCRVIYR 64
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 33 ECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84
+C IC+D ++ C+C G L+Y H C++ W + G C+ CQ +K
Sbjct: 131 QCWICRDGESLPEARY-CNCYGDLQYCHEECLKTWISMSGEKKCKFCQTPYK 181
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 79
C IC +E + C C G L+ HR C+ W NT C+IC
Sbjct: 9 CWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQIC 53
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,728,669
Number of Sequences: 539616
Number of extensions: 3598168
Number of successful extensions: 8467
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 8403
Number of HSP's gapped (non-prelim): 88
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)