Query 026193
Match_columns 242
No_of_seqs 223 out of 794
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 04:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12428 DUF3675: Protein of u 100.0 1.5E-44 3.3E-49 293.1 6.8 117 85-202 1-118 (118)
2 PHA02825 LAP/PHD finger-like p 99.8 2.7E-20 6E-25 157.9 3.2 60 26-87 3-62 (162)
3 KOG1609 Protein involved in mR 99.8 2.4E-20 5.2E-25 166.6 1.6 185 27-212 74-267 (323)
4 smart00744 RINGv The RING-vari 99.7 1.3E-17 2.8E-22 116.3 2.8 48 33-80 1-49 (49)
5 PHA02862 5L protein; Provision 99.7 3.5E-17 7.6E-22 137.3 5.9 53 31-85 2-54 (156)
6 PF12906 RINGv: RING-variant d 99.7 1.9E-17 4.2E-22 114.5 0.9 46 34-79 1-47 (47)
7 KOG3053 Uncharacterized conser 99.5 2.2E-14 4.8E-19 130.0 4.0 65 26-90 15-88 (293)
8 COG5183 SSM4 Protein involved 99.5 2.4E-14 5.2E-19 144.9 4.6 59 31-89 12-73 (1175)
9 PF13639 zf-RING_2: Ring finge 97.7 1.6E-05 3.5E-10 53.1 1.1 41 33-80 2-44 (44)
10 KOG4628 Predicted E3 ubiquitin 97.4 0.00019 4.2E-09 68.2 4.5 48 32-85 230-279 (348)
11 COG5540 RING-finger-containing 97.1 0.00033 7.2E-09 65.9 3.0 49 29-84 321-372 (374)
12 cd00162 RING RING-finger (Real 97.0 0.00056 1.2E-08 43.5 2.4 44 33-82 1-44 (45)
13 PHA02929 N1R/p28-like protein; 96.9 0.00069 1.5E-08 61.5 3.0 48 30-84 173-227 (238)
14 COG5243 HRD1 HRD ubiquitin lig 96.4 0.0046 9.9E-08 59.8 5.0 49 29-84 285-345 (491)
15 PF12678 zf-rbx1: RING-H2 zinc 96.3 0.0018 3.8E-08 48.3 1.4 43 31-80 19-73 (73)
16 smart00184 RING Ring finger. E 96.3 0.0035 7.6E-08 38.3 2.4 39 34-79 1-39 (39)
17 PLN03208 E3 ubiquitin-protein 96.3 0.0038 8.3E-08 55.2 3.4 51 28-84 15-79 (193)
18 PF00097 zf-C3HC4: Zinc finger 96.3 0.0019 4.1E-08 42.0 1.1 41 34-79 1-41 (41)
19 PF13920 zf-C3HC4_3: Zinc fing 96.2 0.0019 4.1E-08 44.2 1.0 46 31-84 2-48 (50)
20 PF11793 FANCL_C: FANCL C-term 95.9 0.0023 5E-08 47.5 0.3 52 31-85 2-67 (70)
21 PF12861 zf-Apc11: Anaphase-pr 95.7 0.0071 1.5E-07 47.2 2.3 51 31-85 21-83 (85)
22 KOG0802 E3 ubiquitin ligase [P 95.5 0.0094 2E-07 59.2 3.0 47 30-83 290-340 (543)
23 PHA02926 zinc finger-like prot 95.1 0.018 4E-07 52.3 3.2 52 28-84 167-230 (242)
24 KOG0317 Predicted E3 ubiquitin 94.9 0.037 8E-07 51.7 4.6 53 25-85 233-285 (293)
25 KOG0828 Predicted E3 ubiquitin 94.0 0.044 9.5E-07 54.8 3.2 55 24-84 564-634 (636)
26 PF13923 zf-C3HC4_2: Zinc fing 94.0 0.018 3.8E-07 37.5 0.3 38 34-79 1-39 (39)
27 smart00504 Ubox Modified RING 93.4 0.09 1.9E-06 36.7 3.2 45 32-84 2-46 (63)
28 KOG0823 Predicted E3 ubiquitin 93.4 0.1 2.2E-06 47.4 4.2 52 27-84 43-95 (230)
29 COG5219 Uncharacterized conser 93.3 0.022 4.9E-07 60.6 -0.1 53 29-84 1467-1523(1525)
30 PF14634 zf-RING_5: zinc-RING 90.9 0.16 3.5E-06 33.9 1.8 42 33-81 1-44 (44)
31 KOG0827 Predicted E3 ubiquitin 90.7 0.2 4.4E-06 48.9 3.0 47 31-80 4-52 (465)
32 KOG1493 Anaphase-promoting com 90.5 0.083 1.8E-06 40.9 0.1 49 33-85 22-82 (84)
33 TIGR00599 rad18 DNA repair pro 89.8 0.21 4.5E-06 48.6 2.3 49 29-85 24-72 (397)
34 COG5194 APC11 Component of SCF 89.4 0.22 4.8E-06 38.9 1.7 26 57-84 56-81 (88)
35 KOG1785 Tyrosine kinase negati 88.0 0.18 3.8E-06 49.6 0.4 48 31-84 369-416 (563)
36 PF05883 Baculo_RING: Baculovi 86.9 0.35 7.6E-06 40.7 1.5 41 29-71 24-69 (134)
37 PF05290 Baculo_IE-1: Baculovi 85.6 0.58 1.3E-05 39.6 2.2 55 30-85 79-133 (140)
38 PF06210 DUF1003: Protein of u 84.2 3.4 7.4E-05 33.4 6.0 48 151-198 6-56 (108)
39 KOG0804 Cytoplasmic Zn-finger 83.7 0.42 9.1E-06 47.4 0.6 47 28-83 172-221 (493)
40 PF14570 zf-RING_4: RING/Ubox 81.9 0.93 2E-05 31.9 1.6 45 34-84 1-48 (48)
41 KOG0825 PHD Zn-finger protein 79.8 1.8 4E-05 45.9 3.6 30 48-84 142-171 (1134)
42 KOG4265 Predicted E3 ubiquitin 78.0 3.1 6.8E-05 40.0 4.4 49 29-84 288-336 (349)
43 KOG2930 SCF ubiquitin ligase, 76.5 1.7 3.7E-05 35.5 1.8 26 57-84 83-108 (114)
44 PLN02189 cellulose synthase 76.4 2.1 4.6E-05 46.3 3.0 51 30-84 33-87 (1040)
45 KOG4445 Uncharacterized conser 75.0 2.2 4.7E-05 40.8 2.4 50 31-85 115-187 (368)
46 COG4420 Predicted membrane pro 74.4 8 0.00017 34.4 5.6 50 149-198 58-110 (191)
47 PF15227 zf-C3HC4_4: zinc fing 73.6 1.2 2.6E-05 29.8 0.3 40 34-79 1-42 (42)
48 PLN02436 cellulose synthase A 72.8 2.9 6.3E-05 45.5 3.0 52 29-84 34-89 (1094)
49 KOG1734 Predicted RING-contain 70.4 1.5 3.2E-05 41.3 0.2 55 25-84 218-281 (328)
50 KOG2177 Predicted E3 ubiquitin 69.5 2.1 4.6E-05 35.9 0.9 46 28-81 10-55 (386)
51 KOG1645 RING-finger-containing 69.3 4 8.6E-05 40.4 2.8 48 31-82 4-54 (463)
52 KOG1002 Nucleotide excision re 66.4 4.4 9.6E-05 41.5 2.5 57 28-90 533-592 (791)
53 PF13445 zf-RING_UBOX: RING-ty 65.6 2.6 5.6E-05 28.7 0.5 39 34-77 1-43 (43)
54 PF10367 Vps39_2: Vacuolar sor 62.4 2.5 5.5E-05 32.0 0.0 32 30-66 77-109 (109)
55 TIGR00570 cdk7 CDK-activating 62.0 7.3 0.00016 37.0 3.0 48 32-85 4-55 (309)
56 PF10272 Tmpp129: Putative tra 60.8 11 0.00023 36.6 3.9 34 48-84 307-351 (358)
57 PF04564 U-box: U-box domain; 60.1 4 8.8E-05 30.0 0.8 45 33-84 6-50 (73)
58 KOG1973 Chromatin remodeling p 59.9 4.9 0.00011 37.0 1.4 53 28-83 216-269 (274)
59 COG5432 RAD18 RING-finger-cont 59.5 4 8.7E-05 39.0 0.8 47 30-84 24-70 (391)
60 KOG1039 Predicted E3 ubiquitin 56.2 8.6 0.00019 37.0 2.5 51 28-83 158-220 (344)
61 PLN02638 cellulose synthase A 56.1 13 0.00027 40.8 3.9 52 30-84 16-70 (1079)
62 COG2322 Predicted membrane pro 54.5 36 0.00077 30.0 5.7 55 149-203 83-143 (177)
63 PF08746 zf-RING-like: RING-li 54.4 7.1 0.00015 26.4 1.1 22 58-79 22-43 (43)
64 KOG0287 Postreplication repair 53.8 4.6 9.9E-05 39.3 0.2 46 31-84 23-68 (442)
65 PF06679 DUF1180: Protein of u 52.8 18 0.00038 31.4 3.6 25 191-215 107-133 (163)
66 PF12273 RCR: Chitin synthesis 52.6 18 0.0004 29.3 3.5 6 206-211 24-29 (130)
67 PLN02195 cellulose synthase A 47.8 17 0.00037 39.5 3.2 52 30-84 5-59 (977)
68 PF07800 DUF1644: Protein of u 47.8 27 0.00058 30.5 3.9 38 31-70 2-48 (162)
69 KOG1952 Transcription factor N 44.3 28 0.00061 37.5 4.1 53 28-84 188-247 (950)
70 KOG1941 Acetylcholine receptor 43.3 12 0.00025 37.2 1.2 47 30-81 364-413 (518)
71 PF12768 Rax2: Cortical protei 42.2 46 0.00099 31.0 4.8 16 177-192 236-251 (281)
72 PF13153 DUF3985: Protein of u 40.5 1.1E+02 0.0024 21.1 5.2 35 150-198 3-37 (44)
73 KOG0802 E3 ubiquitin ligase [P 40.1 19 0.0004 36.1 2.1 44 29-84 477-520 (543)
74 KOG2164 Predicted E3 ubiquitin 39.1 26 0.00056 35.5 2.8 49 31-85 186-237 (513)
75 PF14569 zf-UDP: Zinc-binding 38.6 31 0.00068 26.8 2.6 54 28-84 6-62 (80)
76 COG5416 Uncharacterized integr 37.6 2.2E+02 0.0047 23.0 7.7 60 145-208 26-89 (98)
77 PLN02915 cellulose synthase A 37.2 29 0.00063 38.0 3.0 55 27-84 11-68 (1044)
78 KOG0824 Predicted E3 ubiquitin 36.9 39 0.00084 32.4 3.5 52 29-89 5-58 (324)
79 COG5574 PEX10 RING-finger-cont 36.7 47 0.001 31.2 3.9 51 28-85 212-263 (271)
80 cd00730 rubredoxin Rubredoxin; 35.4 26 0.00057 24.6 1.6 16 74-89 2-17 (50)
81 COG5175 MOT2 Transcriptional r 35.2 34 0.00075 33.5 2.9 52 27-84 10-64 (480)
82 KOG0320 Predicted E3 ubiquitin 33.7 43 0.00093 29.8 3.0 50 27-83 127-177 (187)
83 PF05191 ADK_lid: Adenylate ki 33.7 18 0.00039 23.7 0.5 18 74-91 2-19 (36)
84 PF09788 Tmemb_55A: Transmembr 33.3 33 0.00071 31.9 2.4 66 137-202 183-249 (256)
85 KOG1607 Protein transporter of 33.1 2.1E+02 0.0045 27.5 7.7 20 182-201 263-285 (318)
86 KOG4159 Predicted E3 ubiquitin 32.7 27 0.00059 34.3 1.8 72 5-84 58-129 (398)
87 PF04532 DUF587: Protein of un 32.5 16 0.00034 33.0 0.1 27 37-63 93-123 (215)
88 PLN02400 cellulose synthase 32.2 35 0.00075 37.6 2.6 53 29-84 34-89 (1085)
89 PF13894 zf-C2H2_4: C2H2-type 31.5 19 0.00041 19.6 0.3 11 75-85 2-12 (24)
90 PF10571 UPF0547: Uncharacteri 29.8 26 0.00056 21.5 0.8 12 73-84 14-25 (26)
91 KOG3899 Uncharacterized conser 29.1 36 0.00078 32.7 1.9 27 58-84 328-365 (381)
92 PF03854 zf-P11: P-11 zinc fin 28.4 26 0.00055 25.0 0.6 28 56-85 20-47 (50)
93 KOG1428 Inhibitor of type V ad 27.8 62 0.0013 37.7 3.6 55 27-84 3482-3544(3738)
94 KOG3970 Predicted E3 ubiquitin 27.2 1E+02 0.0022 28.8 4.4 50 30-84 49-105 (299)
95 PF11874 DUF3394: Domain of un 27.1 41 0.00089 29.7 1.8 22 190-211 161-182 (183)
96 COG1983 PspC Putative stress-r 25.7 76 0.0016 24.0 2.8 16 187-202 45-60 (70)
97 PF00096 zf-C2H2: Zinc finger, 25.2 26 0.00057 19.5 0.2 11 75-85 2-12 (23)
98 PF07301 DUF1453: Protein of u 25.0 1E+02 0.0022 26.4 3.7 53 150-208 94-146 (148)
99 smart00782 PhnA_Zn_Ribbon PhnA 23.6 52 0.0011 22.9 1.5 21 71-91 5-26 (47)
100 COG5236 Uncharacterized conser 23.3 97 0.0021 30.6 3.7 55 25-85 55-109 (493)
101 COG2738 Predicted Zn-dependent 23.3 1.8E+02 0.0039 26.5 5.2 30 156-185 110-139 (226)
102 PHA03375 hypothetical protein; 23.2 28 0.00061 36.8 0.1 27 37-63 99-128 (844)
103 KOG0956 PHD finger protein AF1 22.8 43 0.00093 35.5 1.3 56 30-85 116-183 (900)
104 PF05210 Sprouty: Sprouty prot 21.7 64 0.0014 26.3 1.8 19 47-70 59-77 (108)
105 PRK10747 putative protoheme IX 21.0 2.7E+02 0.0057 26.3 6.2 8 194-201 55-62 (398)
106 PF02891 zf-MIZ: MIZ/SP-RING z 20.9 65 0.0014 22.3 1.5 35 45-82 11-50 (50)
107 PF08507 COPI_assoc: COPI asso 20.8 1.7E+02 0.0036 23.8 4.2 13 149-161 70-82 (136)
108 COG4846 CcdC Membrane protein 20.6 1.4E+02 0.003 25.7 3.7 44 152-196 97-140 (163)
No 1
>PF12428 DUF3675: Protein of unknown function (DUF3675) ; InterPro: IPR022143 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF00097 from PFAM. There are two completely conserved residues (R and L) that may be functionally important.
Probab=100.00 E-value=1.5e-44 Score=293.06 Aligned_cols=117 Identities=56% Similarity=1.077 Sum_probs=114.4
Q ss_pred ccccCCCCcccccccccccccccccccccccCceeE-EEeccccccCCCccchhhccCCCchhHHHHHHHHHHHHHHHhh
Q 026193 85 PGYTAPPPLFQFGNIPMNFRGNWEISRRELNNPRII-MVAADHSFLQSPTYEEYSASNTRSMICCRSIALIFVFLLILRH 163 (242)
Q Consensus 85 ~~yt~p~~~~~~~~~~~~~r~~~~i~~~dl~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~crs~ai~fm~lLllrh 163 (242)
|+||+|||+++.+++++++|++|+++++|++++|++ |+++|++++++ ||+||+.+|++|++||||+|||||+||||||
T Consensus 1 PgYTaPp~~~~~~~~~i~ir~~we~~~~d~~~~~~~a~~~ae~~~l~~-~y~e~~~~~~~~a~~CRsvAli~m~LLllRh 79 (118)
T PF12428_consen 1 PGYTAPPKKFQPGETAIDIRGNWEISRRDLRDPRFLAMAAAERQFLES-EYDEYAASNTRGAACCRSVALIFMVLLLLRH 79 (118)
T ss_pred CCCCCCCCCCCcCccceEecCCccccccCccchhhhhhhhhhhhcccc-ccccccccCCCceeHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999 99999999998 7999999999999999999999999999999
Q ss_pred hcceeecCCCCCchHHHHHHHHHHhhhhHHHHHHHHHHH
Q 026193 164 TLPVILSRTNDYSFPIFLQLFLRTAGIVLPIYVMVKAVT 202 (242)
Q Consensus 164 ~l~~~~~~~~~~s~~lf~l~~Lr~aGillP~Yi~~~ai~ 202 (242)
+++++++|+|+|+|++||+++||+|||+||||||+|+|+
T Consensus 80 al~l~~~~~~~~s~~lftl~~LRaaGilLP~Yim~rais 118 (118)
T PF12428_consen 80 ALALVTGGAEDYSFTLFTLLLLRAAGILLPCYIMARAIS 118 (118)
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999974
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.79 E-value=2.7e-20 Score=157.86 Aligned_cols=60 Identities=27% Similarity=0.624 Sum_probs=53.3
Q ss_pred CCCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccc
Q 026193 26 STPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGY 87 (242)
Q Consensus 26 ~s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~~y 87 (242)
+++...+.||||+++++ .+..||+|+||+||||++||++|++.+++..||+|+++|....
T Consensus 3 ~~s~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CcCCCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 34667899999998864 4679999999999999999999999999999999999998653
No 3
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.78 E-value=2.4e-20 Score=166.64 Aligned_cols=185 Identities=26% Similarity=0.385 Sum_probs=137.9
Q ss_pred CCCCCCeeEEeecCCCCC---CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccccCCCCccccccccccc
Q 026193 27 TPRKLVECRICQDEDADS---NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPPLFQFGNIPMNF 103 (242)
Q Consensus 27 s~~~~~~CRIC~e~~~d~---~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~~yt~p~~~~~~~~~~~~~ 103 (242)
++.+...||||+++.++. .++.||.|+|+++|||+.|+++|+..|++..||+|++.|...++.+++...+...+...
T Consensus 74 ~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~~~~~~~ 153 (323)
T KOG1609|consen 74 SPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVISKVRSGA 153 (323)
T ss_pred CCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehhhhhhHh
Confidence 345568999999986543 59999999999999999999999999999999999999999988888877666554433
Q ss_pred ccccccccc-cccCceeE-EEeccccccCCCccchhhccCCCchhHHHHHH-HHHHHHHHHhhhcceeecC---CCCCch
Q 026193 104 RGNWEISRR-ELNNPRII-MVAADHSFLQSPTYEEYSASNTRSMICCRSIA-LIFVFLLILRHTLPVILSR---TNDYSF 177 (242)
Q Consensus 104 r~~~~i~~~-dl~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~crs~a-i~fm~lLllrh~l~~~~~~---~~~~s~ 177 (242)
.+.|..... .++....+ +..+.+.++.. .++++....+..+..++... +.++++.++++.+...... ...+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 232 (323)
T KOG1609|consen 154 LSERTLSGMILLKVALLVAIIVSVLPLLLG-LLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYIFILKS 232 (323)
T ss_pred hhheeeehhhhhhhhhhheeeEEeehhhhh-hhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHHHHHHH
Confidence 334444332 34444444 44455556654 57777777777778888888 8888888888888765422 224566
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q 026193 178 PIFLQLFLRTAGIVLPIYVMVKAVTALQRHRYQQV 212 (242)
Q Consensus 178 ~lf~l~~Lr~aGillP~Yi~~~ai~~~q~~r~~~~ 212 (242)
+.+.+.++|+.++.++.+++++++-..|.++.+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (323)
T KOG1609|consen 233 LKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLV 267 (323)
T ss_pred HHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcce
Confidence 66677899999999999999866666666665553
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.68 E-value=1.3e-17 Score=116.27 Aligned_cols=48 Identities=58% Similarity=1.318 Sum_probs=43.7
Q ss_pred eeEEeecC-CCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccc
Q 026193 33 ECRICQDE-DADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQ 80 (242)
Q Consensus 33 ~CRIC~e~-~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk 80 (242)
.||||+++ +++++++.||+|+|+++|||++||++|+.++++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 59999984 3456799999999999999999999999999999999996
No 5
>PHA02862 5L protein; Provisional
Probab=99.68 E-value=3.5e-17 Score=137.34 Aligned_cols=53 Identities=26% Similarity=0.679 Sum_probs=48.4
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
...||||++++++. .+||+|+||+||||++||++|++.+++..||+|+++|..
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 36899999987653 699999999999999999999999999999999999974
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.65 E-value=1.9e-17 Score=114.49 Aligned_cols=46 Identities=50% Similarity=1.279 Sum_probs=37.7
Q ss_pred eEEeecCCCC-CCcccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 026193 34 CRICQDEDAD-SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 79 (242)
Q Consensus 34 CRIC~e~~~d-~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEIC 79 (242)
||||++++++ ++|++||.|+||++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 8999998764 469999999999999999999999999999999998
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=2.2e-14 Score=130.01 Aligned_cols=65 Identities=29% Similarity=0.702 Sum_probs=56.4
Q ss_pred CCCCCCCeeEEeecCCCCCC---cccccccCCCCccccHHHHHHHHHHhC------CcccccccccccccccCC
Q 026193 26 STPRKLVECRICQDEDADSN---METPCSCCGSLKYAHRRCVQRWCNEKG------NTTCEICQQQFKPGYTAP 90 (242)
Q Consensus 26 ~s~~~~~~CRIC~e~~~d~~---L~~PC~C~GSlkyvH~~CL~~W~~~kg------~~~CEICk~~y~~~yt~p 90 (242)
++.+.++.||||+..++|+. ++.||.|+||.|+||+.||.+|+.+|. ...|+.|+.+|...|+..
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l 88 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQL 88 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecccc
Confidence 44567899999999988764 899999999999999999999999984 578999999999877543
No 8
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.47 E-value=2.4e-14 Score=144.86 Aligned_cols=59 Identities=41% Similarity=0.998 Sum_probs=52.9
Q ss_pred CCeeEEeecCC-CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc--ccccC
Q 026193 31 LVECRICQDED-ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK--PGYTA 89 (242)
Q Consensus 31 ~~~CRIC~e~~-~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~--~~yt~ 89 (242)
...||||+.++ +|++|-.||+|+||+||+|++||..|...+++++|+|||++|+ ..|+.
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e 73 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKE 73 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeeccc
Confidence 47899999886 5789999999999999999999999999999999999999875 45653
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.66 E-value=1.6e-05 Score=53.10 Aligned_cols=41 Identities=32% Similarity=0.970 Sum_probs=31.6
Q ss_pred eeEEeecCCC--CCCcccccccCCCCccccHHHHHHHHHHhCCccccccc
Q 026193 33 ECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQ 80 (242)
Q Consensus 33 ~CRIC~e~~~--d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk 80 (242)
.|-||+++.+ +.....||. +.+|.+|+++|++.++ .|++|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~~--~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRNN--SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHSS--B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhCC--cCCccC
Confidence 6889998853 334566753 8999999999998864 999995
No 10
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00019 Score=68.21 Aligned_cols=48 Identities=25% Similarity=0.744 Sum_probs=40.5
Q ss_pred CeeEEeecCCCCCC--cccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 32 VECRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 32 ~~CRIC~e~~~d~~--L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..|-||+|+..++. -+.||+ +..|..|+..|+... .+.|++||+.-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 79999999976543 479998 899999999999988 4679999997653
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00033 Score=65.90 Aligned_cols=49 Identities=31% Similarity=0.657 Sum_probs=39.7
Q ss_pred CCCCeeEEeecCC--CCCCcccccccCCCCccccHHHHHHHHH-HhCCccccccccccc
Q 026193 29 RKLVECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCN-EKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~--~d~~L~~PC~C~GSlkyvH~~CL~~W~~-~kg~~~CEICk~~y~ 84 (242)
...++|-||.+.. .|.-++.||+ +-.|..|+.+|+. .|. +|+.|+.+.+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~~--~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYSN--KCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhcc--cCCccCCCCC
Confidence 4559999998875 2445799998 7899999999998 454 8999997764
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.99 E-value=0.00056 Score=43.52 Aligned_cols=44 Identities=32% Similarity=0.882 Sum_probs=33.3
Q ss_pred eeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccc
Q 026193 33 ECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQ 82 (242)
Q Consensus 33 ~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~ 82 (242)
.|-||++...+.....||. +.+|..|+.+|+.. +...|++|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4789988764333455675 67999999999987 55689999875
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.90 E-value=0.00069 Score=61.46 Aligned_cols=48 Identities=31% Similarity=0.726 Sum_probs=36.9
Q ss_pred CCCeeEEeecCCCCCC-------cccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 30 KLVECRICQDEDADSN-------METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~-------L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
...+|-||++...+.+ ...||. +..|..|+.+|+..+ ..|++|+..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~--~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK--NTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC--CCCCCCCCEee
Confidence 4679999999743321 345665 889999999999754 48999999886
No 14
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0046 Score=59.84 Aligned_cols=49 Identities=31% Similarity=0.735 Sum_probs=38.2
Q ss_pred CCCCeeEEeecCCC--C----------CCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDA--D----------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~--d----------~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
+....|-||.+|-- + .+-..||. +..|..||+.|+..++ +|+||+.+..
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCccc
Confidence 45679999998821 1 12468887 7899999999999875 8999998843
No 15
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.33 E-value=0.0018 Score=48.31 Aligned_cols=43 Identities=28% Similarity=0.796 Sum_probs=30.2
Q ss_pred CCeeEEeecCCCC-----------CC-cccccccCCCCccccHHHHHHHHHHhCCccccccc
Q 026193 31 LVECRICQDEDAD-----------SN-METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQ 80 (242)
Q Consensus 31 ~~~CRIC~e~~~d-----------~~-L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk 80 (242)
...|-||++...+ -. ...+|. +..|..||.+|++.+. .|++|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 4459999877521 11 234664 8899999999997665 999996
No 16
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.28 E-value=0.0035 Score=38.33 Aligned_cols=39 Identities=38% Similarity=0.997 Sum_probs=30.0
Q ss_pred eEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 026193 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 79 (242)
Q Consensus 34 CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEIC 79 (242)
|.||++.. ......||. +..|..|+.+|++ ++...|++|
T Consensus 1 C~iC~~~~-~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-KDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC-CCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 67888773 346778876 5789999999998 455678876
No 17
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.26 E-value=0.0038 Score=55.18 Aligned_cols=51 Identities=22% Similarity=0.629 Sum_probs=40.2
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--------------hCCccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--------------KGNTTCEICQQQFK 84 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--------------kg~~~CEICk~~y~ 84 (242)
.++...|-||++...+ +.+.+|. +.....||.+|+.. ++...|++|+..+.
T Consensus 15 ~~~~~~CpICld~~~d-PVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 15 SGGDFDCNICLDQVRD-PVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCCccCCccCCCcCCC-cEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3456899999987654 6778876 78999999999863 23568999999875
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.26 E-value=0.0019 Score=42.02 Aligned_cols=41 Identities=29% Similarity=0.873 Sum_probs=34.6
Q ss_pred eEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 026193 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 79 (242)
Q Consensus 34 CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEIC 79 (242)
|.||++...+.....||. +.+...|+.+|++.++...|++|
T Consensus 1 C~iC~~~~~~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 678888776544589987 88999999999998888889987
No 19
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.22 E-value=0.0019 Score=44.20 Aligned_cols=46 Identities=28% Similarity=0.653 Sum_probs=35.9
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlky-vH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
...|.||++...+ .+..||. +. +-..|+.+|.+ +...|++|+.++.
T Consensus 2 ~~~C~iC~~~~~~-~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD-VVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS-EEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc-eEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 3579999887543 6788997 56 89999999999 5679999998865
No 20
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.90 E-value=0.0023 Score=47.48 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=24.8
Q ss_pred CCeeEEeecCCC-CC-Ccccc---cccCCCCccccHHHHHHHHHHh-C--------Ccccccccccccc
Q 026193 31 LVECRICQDEDA-DS-NMETP---CSCCGSLKYAHRRCVQRWCNEK-G--------NTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~-d~-~L~~P---C~C~GSlkyvH~~CL~~W~~~k-g--------~~~CEICk~~y~~ 85 (242)
+.+|.||++... ++ ....- ..|+ +..|..||.+|+... + .-.|+.|+.+...
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998643 22 22233 4674 789999999999763 1 1369999988764
No 21
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.70 E-value=0.0071 Score=47.18 Aligned_cols=51 Identities=24% Similarity=0.553 Sum_probs=35.9
Q ss_pred CCeeEEeecCCC-----------CCCcccccccCCCCccccHHHHHHHHHHh-CCcccccccccccc
Q 026193 31 LVECRICQDEDA-----------DSNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~-----------d~~L~~PC~C~GSlkyvH~~CL~~W~~~k-g~~~CEICk~~y~~ 85 (242)
...|-||....+ +-+++ =+.|+ +.+|..||.+|++.. .+..|++|+++|+.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 456777766532 11221 24564 789999999999974 46799999999864
No 22
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.0094 Score=59.24 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=39.0
Q ss_pred CCCeeEEeecCCCCC----CcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 026193 30 KLVECRICQDEDADS----NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~----~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y 83 (242)
....|.||.|+...+ +-..||. +..|..||++|++.+ ..|++|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~--qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQ--QTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHh--CcCCcchhhh
Confidence 367999999986543 5678887 899999999999995 4899999844
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=95.11 E-value=0.018 Score=52.29 Aligned_cols=52 Identities=25% Similarity=0.651 Sum_probs=39.8
Q ss_pred CCCCCeeEEeecCCC------CC--CcccccccCCCCccccHHHHHHHHHHh----CCccccccccccc
Q 026193 28 PRKLVECRICQDEDA------DS--NMETPCSCCGSLKYAHRRCVQRWCNEK----GNTTCEICQQQFK 84 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~------d~--~L~~PC~C~GSlkyvH~~CL~~W~~~k----g~~~CEICk~~y~ 84 (242)
.+.+.+|-||+|.-- +. .+..+|. +.....|+.+|.+.+ ....|++|+..|.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 456789999998632 11 2567777 789999999999864 2467999999987
No 24
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.037 Score=51.71 Aligned_cols=53 Identities=30% Similarity=0.901 Sum_probs=43.4
Q ss_pred CCCCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 25 ISTPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 25 ~~s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.+.+.....|-+|+|.-.+ +--+||. +..=-.|++.|+++|. .|++|+..+.|
T Consensus 233 ~~i~~a~~kC~LCLe~~~~-pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~p 285 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSN-PSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQP 285 (293)
T ss_pred ccCCCCCCceEEEecCCCC-CCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCC
Confidence 3346667999999998753 6679997 6777899999999987 49999999875
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.044 Score=54.82 Aligned_cols=55 Identities=27% Similarity=0.623 Sum_probs=41.2
Q ss_pred CCCCCCCCCeeEEeecCCC------C----------CCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 24 DISTPRKLVECRICQDEDA------D----------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 24 ~~~s~~~~~~CRIC~e~~~------d----------~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
++...+....|-||...-+ + +.+.+||+ +..|+.||++|.+..+ ..|+.|+....
T Consensus 564 ~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~yk-l~CPvCR~pLP 634 (636)
T KOG0828|consen 564 LEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTYK-LICPVCRCPLP 634 (636)
T ss_pred ccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhhc-ccCCccCCCCC
Confidence 4445667789999976521 1 24678999 7999999999998432 57999987764
No 26
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=94.02 E-value=0.018 Score=37.54 Aligned_cols=38 Identities=32% Similarity=0.896 Sum_probs=28.9
Q ss_pred eEEeecCCCCCC-cccccccCCCCccccHHHHHHHHHHhCCcccccc
Q 026193 34 CRICQDEDADSN-METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEIC 79 (242)
Q Consensus 34 CRIC~e~~~d~~-L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEIC 79 (242)
|-||++...+ + ...||. +...+.|+++|++.+ .+|++|
T Consensus 1 C~iC~~~~~~-~~~~~~CG-----H~fC~~C~~~~~~~~--~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCG-----HSFCKECIEKYLEKN--PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-EEEECTTS-----EEEEHHHHHHHHHCT--SB-TTT
T ss_pred CCCCCCcccC-cCEECCCC-----CchhHHHHHHHHHCc--CCCcCC
Confidence 6688777655 5 578887 889999999999883 689887
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=93.45 E-value=0.09 Score=36.65 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=36.0
Q ss_pred CeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 32 VECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 32 ~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
-.|.||.+.-.+ ++..||. +.+-+.|+.+|+.. ...|++|+..+.
T Consensus 2 ~~Cpi~~~~~~~-Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKD-PVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCC-CEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 368899877654 7788874 78999999999987 458999998874
No 28
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.1 Score=47.45 Aligned_cols=52 Identities=21% Similarity=0.616 Sum_probs=43.0
Q ss_pred CCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhC-Cccccccccccc
Q 026193 27 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKG-NTTCEICQQQFK 84 (242)
Q Consensus 27 s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg-~~~CEICk~~y~ 84 (242)
+++..-.|-||++...| +.+++|. +..==.||-+|+..+. ...|++||.+..
T Consensus 43 ~~~~~FdCNICLd~akd-PVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD-PVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred CCCCceeeeeeccccCC-CEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccc
Confidence 46778999999998765 8999997 6677799999999875 566799998764
No 29
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.32 E-value=0.022 Score=60.58 Aligned_cols=53 Identities=25% Similarity=0.715 Sum_probs=38.1
Q ss_pred CCCCeeEEeecCCC--CCCc-ccccc-cCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDA--DSNM-ETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~--d~~L-~~PC~-C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
+...+|-||..--. |..+ ..-|. || .-.|..||-+|+..+++..|++|+.++.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34689999976432 2222 12232 33 5699999999999999999999997764
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=90.87 E-value=0.16 Score=33.94 Aligned_cols=42 Identities=21% Similarity=0.610 Sum_probs=34.0
Q ss_pred eeEEeecCC--CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccc
Q 026193 33 ECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQ 81 (242)
Q Consensus 33 ~CRIC~e~~--~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~ 81 (242)
.|-||++.. +...++.+|. +.+..+|+.++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 377898886 3346899997 889999999999 66789999974
No 31
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=0.2 Score=48.92 Aligned_cols=47 Identities=30% Similarity=0.774 Sum_probs=31.9
Q ss_pred CCeeEEeecCCC-CCCcccccccCCCCccccHHHHHHHHHHhCC-ccccccc
Q 026193 31 LVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGN-TTCEICQ 80 (242)
Q Consensus 31 ~~~CRIC~e~~~-d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~-~~CEICk 80 (242)
...|.||-+... +.++-.-=.|- +.+|..||.+|+..-.. +.|+||+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG---hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG---HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh---hHHHHHHHHHHHccCCccCCCCcee
Confidence 568999944322 22332222242 68999999999987654 7999999
No 32
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=0.083 Score=40.89 Aligned_cols=49 Identities=24% Similarity=0.609 Sum_probs=35.7
Q ss_pred eeEEeecCCC-----------CCCcccccccCCCCccccHHHHHHHHHHhC-Ccccccccccccc
Q 026193 33 ECRICQDEDA-----------DSNMETPCSCCGSLKYAHRRCVQRWCNEKG-NTTCEICQQQFKP 85 (242)
Q Consensus 33 ~CRIC~e~~~-----------d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg-~~~CEICk~~y~~ 85 (242)
.|-||..+.+ +=+|+-. .|+ +.+|..|+.+|++.+. ...|+.|+++|+.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 6777766532 2345443 552 7899999999999864 4689999999874
No 33
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.83 E-value=0.21 Score=48.65 Aligned_cols=49 Identities=22% Similarity=0.518 Sum_probs=39.5
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.....|.||++... .+.+.||. +.+...|+..|+..++ .|++|+..+..
T Consensus 24 e~~l~C~IC~d~~~-~PvitpCg-----H~FCs~CI~~~l~~~~--~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFD-VPVLTSCS-----HTFCSLCIRRCLSNQP--KCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhh-CccCCCCC-----CchhHHHHHHHHhCCC--CCCCCCCcccc
Confidence 45679999988764 46778887 7889999999997753 89999998753
No 34
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=89.43 E-value=0.22 Score=38.86 Aligned_cols=26 Identities=31% Similarity=0.786 Sum_probs=24.0
Q ss_pred ccccHHHHHHHHHHhCCccccccccccc
Q 026193 57 KYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 57 kyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
+..|..|+.+|++.|| .|++++++|+
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~ 81 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWV 81 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeE
Confidence 6799999999999977 8999999987
No 35
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=88.03 E-value=0.18 Score=49.65 Aligned_cols=48 Identities=27% Similarity=0.750 Sum_probs=39.7
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
...|.||-|.+.+ .-+-||. +..-..||..|..+.+...|+.|+.+.+
T Consensus 369 FeLCKICaendKd-vkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 369 FELCKICAENDKD-VKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHHHhhccCCC-ccccccc-----chHHHHHHHhhcccCCCCCCCceeeEec
Confidence 4689999877654 4578987 6777899999999998899999998876
No 36
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=86.95 E-value=0.35 Score=40.73 Aligned_cols=41 Identities=34% Similarity=0.611 Sum_probs=28.9
Q ss_pred CCCCeeEEeecCCCC--CCcccccccCCCC---ccccHHHHHHHHHHh
Q 026193 29 RKLVECRICQDEDAD--SNMETPCSCCGSL---KYAHRRCVQRWCNEK 71 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d--~~L~~PC~C~GSl---kyvH~~CL~~W~~~k 71 (242)
....+|+||++.-.+ |-..-+|. |++ |..|..|+++|-+++
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~--g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDG--GTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecC--CeehHHHHHHHHHHHHHHhhc
Confidence 347899999988543 44555554 444 459999999996554
No 37
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=85.61 E-value=0.58 Score=39.60 Aligned_cols=55 Identities=29% Similarity=0.694 Sum_probs=46.2
Q ss_pred CCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 30 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..-+|-||+|.+.|..+..|=.|-|. +.---=|.+-|--.+-.-.|+.||..|+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 56799999999888899999999883 44555678889888888899999999984
No 38
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=84.20 E-value=3.4 Score=33.35 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhhcceee---cCCCCCchHHHHHHHHHHhhhhHHHHHHH
Q 026193 151 IALIFVFLLILRHTLPVIL---SRTNDYSFPIFLQLFLRTAGIVLPIYVMV 198 (242)
Q Consensus 151 ~ai~fm~lLllrh~l~~~~---~~~~~~s~~lf~l~~Lr~aGillP~Yi~~ 198 (242)
..++++++++++-++.+.. ...|-|+|.++++++-=.|.+.-|+..|.
T Consensus 6 Fi~~~~~~~~~Wi~~N~~~~~~~~fDpyPFilLnl~lS~~Aa~~ap~Ilms 56 (108)
T PF06210_consen 6 FIIIFTVFLAVWILLNILAPPRPAFDPYPFILLNLVLSLEAAYQAPLILMS 56 (108)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554443 35688999999988888888888875554
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.68 E-value=0.42 Score=47.37 Aligned_cols=47 Identities=19% Similarity=0.617 Sum_probs=34.0
Q ss_pred CCCCCeeEEeecCCCC---CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 026193 28 PRKLVECRICQDEDAD---SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d---~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y 83 (242)
..+.+.|-+|+|.-++ +.+-.+|. +-.|-.|+++|-.. .|++|++--
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q 221 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQ 221 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhc
Confidence 4577999999988433 33556665 78999999999665 566665543
No 40
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=81.88 E-value=0.93 Score=31.90 Aligned_cols=45 Identities=22% Similarity=0.598 Sum_probs=20.2
Q ss_pred eEEeecCCC-CCCcccccccCCCCccccHHHHHHHHHHh--CCccccccccccc
Q 026193 34 CRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCEICQQQFK 84 (242)
Q Consensus 34 CRIC~e~~~-d~~L~~PC~C~GSlkyvH~~CL~~W~~~k--g~~~CEICk~~y~ 84 (242)
|.+|-++.+ .+.-..||.|. ++-|+.=|.+.+ ++-.|+-||.+|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 445666542 33457999994 456666676655 4779999999984
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.78 E-value=1.8 Score=45.88 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=25.4
Q ss_pred cccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 48 TPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 48 ~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
.+|.| |+|..|+..|...-+ +|++|+.+|-
T Consensus 142 k~c~H-----~FC~~Ci~sWsR~aq--TCPiDR~EF~ 171 (1134)
T KOG0825|consen 142 KHTAH-----YFCEECVGSWSRCAQ--TCPVDRGEFG 171 (1134)
T ss_pred ccccc-----ccHHHHhhhhhhhcc--cCchhhhhhh
Confidence 55665 999999999998754 8999999995
No 42
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.04 E-value=3.1 Score=40.04 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=33.5
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
+..++|=||+.+.-+ -++.||+= -..=..|.+...-. ...|+||++.+.
T Consensus 288 ~~gkeCVIClse~rd-t~vLPCRH----LCLCs~Ca~~Lr~q--~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRD-TVVLPCRH----LCLCSGCAKSLRYQ--TNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcc-eEEecchh----hehhHhHHHHHHHh--hcCCCccccchH
Confidence 568899999988754 57788761 12334576665522 347999999875
No 43
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=76.48 E-value=1.7 Score=35.50 Aligned_cols=26 Identities=19% Similarity=0.666 Sum_probs=23.3
Q ss_pred ccccHHHHHHHHHHhCCccccccccccc
Q 026193 57 KYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 57 kyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
+-.|.-|+.+|++.++ .|++|.+++.
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~ 108 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWV 108 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCccee
Confidence 6799999999999876 8999999875
No 44
>PLN02189 cellulose synthase
Probab=76.43 E-value=2.1 Score=46.35 Aligned_cols=51 Identities=27% Similarity=0.664 Sum_probs=38.3
Q ss_pred CCCeeEEeecCC---CCCCcccccc-cCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 30 KLVECRICQDED---ADSNMETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~---~d~~L~~PC~-C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
....|+||-++- .++.+.-.|+ |. --|=+.|. ..-.+.|+..|+.||..|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 456999998873 3566778888 63 23888998 3444558899999999998
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=75.00 E-value=2.2 Score=40.77 Aligned_cols=50 Identities=30% Similarity=0.579 Sum_probs=36.0
Q ss_pred CCeeEEeecCCCCC--CcccccccCCCCccccHHHHHHHHHHh---------------------CCcccccccccccc
Q 026193 31 LVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEK---------------------GNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~d~--~L~~PC~C~GSlkyvH~~CL~~W~~~k---------------------g~~~CEICk~~y~~ 85 (242)
..+|-||+-+..++ ..+++|. +|.|-.||.|.+++= -...|++|+...+.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 45677776654333 4688987 899999999988641 14579999987653
No 46
>COG4420 Predicted membrane protein [Function unknown]
Probab=74.44 E-value=8 Score=34.44 Aligned_cols=50 Identities=28% Similarity=0.418 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhhcceee---cCCCCCchHHHHHHHHHHhhhhHHHHHHH
Q 026193 149 RSIALIFVFLLILRHTLPVIL---SRTNDYSFPIFLQLFLRTAGIVLPIYVMV 198 (242)
Q Consensus 149 rs~ai~fm~lLllrh~l~~~~---~~~~~~s~~lf~l~~Lr~aGillP~Yi~~ 198 (242)
|...+.|.++|++|-.+.+.. ..-+.|+|.++-+++.-.|.|--|+..|.
T Consensus 58 w~fil~~~~~ll~Wi~lNl~~~~~~~wDpyPFi~LnLllS~~AaiqAp~IlmS 110 (191)
T COG4420 58 WAFILTFTLLLLLWIVLNLFLVPGLAWDPYPFILLNLLLSTLAAIQAPLILMS 110 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCcCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 455778888888887777754 34578999999999988999988887664
No 47
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=73.59 E-value=1.2 Score=29.77 Aligned_cols=40 Identities=30% Similarity=0.687 Sum_probs=26.3
Q ss_pred eEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCC--cccccc
Q 026193 34 CRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGN--TTCEIC 79 (242)
Q Consensus 34 CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~--~~CEIC 79 (242)
|-||++-.. ++...+|. +-+=+.||.+|.++.+. ..|++|
T Consensus 1 CpiC~~~~~-~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 557766654 37778886 67788999999987654 588887
No 48
>PLN02436 cellulose synthase A
Probab=72.83 E-value=2.9 Score=45.49 Aligned_cols=52 Identities=29% Similarity=0.650 Sum_probs=38.9
Q ss_pred CCCCeeEEeecCC---CCCCcccccc-cCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDED---ADSNMETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~---~d~~L~~PC~-C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
.....|+||-++- .++.+.-.|+ |. --|=+.|. ..-.+.|+..|+.||..|+
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECA---FPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 3456999998873 4677778887 62 23888998 4444568899999999998
No 49
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.44 E-value=1.5 Score=41.29 Aligned_cols=55 Identities=18% Similarity=0.567 Sum_probs=40.5
Q ss_pred CCCCCCCCeeEEeecCC-----CC----CCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 25 ISTPRKLVECRICQDED-----AD----SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 25 ~~s~~~~~~CRIC~e~~-----~d----~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
+.+..+...|-+|-..- +| +.-..-|+ +..|+-|+.-|+-.-+..+|+-||++-.
T Consensus 218 Ptkhl~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 218 PTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 33455678999996441 22 22345565 7899999999999888889999998765
No 50
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.47 E-value=2.1 Score=35.88 Aligned_cols=46 Identities=24% Similarity=0.623 Sum_probs=38.3
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQ 81 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~ 81 (242)
..+...|.||++...+. .+.||. +.+=+.|+..|.. ....|+.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~p-~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP-VLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC-cccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 45678999999987654 888887 7788899999998 7789999994
No 51
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.27 E-value=4 Score=40.36 Aligned_cols=48 Identities=21% Similarity=0.655 Sum_probs=36.1
Q ss_pred CCeeEEeecCCC---CCCcccccccCCCCccccHHHHHHHHHHhCCccccccccc
Q 026193 31 LVECRICQDEDA---DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQ 82 (242)
Q Consensus 31 ~~~CRIC~e~~~---d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~ 82 (242)
...|-||+++-. +-.++.| .|. +..-..|+++|+-.+-...|+.|+-+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCCh
Confidence 457999998842 3346666 332 67889999999986667899999865
No 52
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=66.36 E-value=4.4 Score=41.50 Aligned_cols=57 Identities=26% Similarity=0.682 Sum_probs=44.7
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccccccccCC
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKPGYTAP 90 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~---kg~~~CEICk~~y~~~yt~p 90 (242)
..+..+|-+|+++.+| .+++-|+ +-.-+.|+..++.. +.+.+|+.|.......-+.|
T Consensus 533 nk~~~~C~lc~d~aed-~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAED-YIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred ccCceeecccCChhhh-hHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 4567899999998765 7888887 56778999999875 45799999998877655544
No 53
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=65.55 E-value=2.6 Score=28.66 Aligned_cols=39 Identities=23% Similarity=0.670 Sum_probs=20.6
Q ss_pred eEEeecCCC-C-CCcccccccCCCCccccHHHHHHHHHHh--CCcccc
Q 026193 34 CRICQDEDA-D-SNMETPCSCCGSLKYAHRRCVQRWCNEK--GNTTCE 77 (242)
Q Consensus 34 CRIC~e~~~-d-~~L~~PC~C~GSlkyvH~~CL~~W~~~k--g~~~CE 77 (242)
|-||.+-.+ + .+++.||. +-+=++||++|.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 556766322 2 35889976 688999999999975 455664
No 54
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=62.45 E-value=2.5 Score=31.96 Aligned_cols=32 Identities=25% Similarity=0.680 Sum_probs=23.9
Q ss_pred CCCeeEEeecCCCCCC-cccccccCCCCccccHHHHHH
Q 026193 30 KLVECRICQDEDADSN-METPCSCCGSLKYAHRRCVQR 66 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~-L~~PC~C~GSlkyvH~~CL~~ 66 (242)
....|.+|...-..+. .+.||. +.+|..|++|
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 4567999988865544 477875 6899999764
No 55
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.99 E-value=7.3 Score=36.98 Aligned_cols=48 Identities=19% Similarity=0.466 Sum_probs=34.8
Q ss_pred CeeEEeecCCCCC----CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 32 VECRICQDEDADS----NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 32 ~~CRIC~e~~~d~----~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..|-+|....--+ -++++|. +-+=..|+.+.+.. +...|+.|+..++.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 5799998864222 2677775 66778999997643 55689999988864
No 56
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=60.83 E-value=11 Score=36.57 Aligned_cols=34 Identities=24% Similarity=0.754 Sum_probs=25.7
Q ss_pred cccccCCCCccccHHHHHHHHHHh-----------CCccccccccccc
Q 026193 48 TPCSCCGSLKYAHRRCVQRWCNEK-----------GNTTCEICQQQFK 84 (242)
Q Consensus 48 ~PC~C~GSlkyvH~~CL~~W~~~k-----------g~~~CEICk~~y~ 84 (242)
.+|.|+- --=.+|+-+|+..+ |+-.|+.|+.+|-
T Consensus 307 ~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 307 QQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4677752 23568999999875 4778999999884
No 57
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=60.08 E-value=4 Score=29.98 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=29.3
Q ss_pred eeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 33 ECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 33 ~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
.|-|+++--. .+.+.|+. +..=+.|+++|+.. +...|++|+....
T Consensus 6 ~CpIt~~lM~-dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 6 LCPITGELMR-DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLS 50 (73)
T ss_dssp B-TTTSSB-S-SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-S
T ss_pred CCcCcCcHhh-CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCC
Confidence 4556554443 36777754 68999999999998 4568999987665
No 58
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=59.88 E-value=4.9 Score=36.96 Aligned_cols=53 Identities=26% Similarity=0.504 Sum_probs=33.4
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCC-ccccHHHHHHHHHHhCCcccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSL-KYAHRRCVQRWCNEKGNTTCEICQQQF 83 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSl-kyvH~~CL~~W~~~kg~~~CEICk~~y 83 (242)
+++...| ||... .-+.|+ -|.|.+=- .|+|..|+--=..-+|.|.|+-|+..-
T Consensus 216 ~~e~~yC-~Cnqv-syg~Mi-~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 216 PDEPTYC-ICNQV-SYGKMI-GCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCCEEE-Eeccc-cccccc-ccCCCCCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 3344444 56522 224454 46665544 899999976444447899999998654
No 59
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=59.48 E-value=4 Score=38.95 Aligned_cols=47 Identities=23% Similarity=0.561 Sum_probs=36.2
Q ss_pred CCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 30 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
....||||.+--. -+.++||. +-+-.-|+.+-++... .|++|++++.
T Consensus 24 s~lrC~IC~~~i~-ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRIS-IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheee-cceecccc-----cchhHHHHHHHhcCCC--CCccccccHH
Confidence 4678999977654 37788887 4566788888887765 7999998875
No 60
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.24 E-value=8.6 Score=36.96 Aligned_cols=51 Identities=18% Similarity=0.535 Sum_probs=36.5
Q ss_pred CCCCCeeEEeecCCCCCC-----c-c-cccccCCCCccccHHHHHHHHHHhC-----Ccccccccccc
Q 026193 28 PRKLVECRICQDEDADSN-----M-E-TPCSCCGSLKYAHRRCVQRWCNEKG-----NTTCEICQQQF 83 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~-----L-~-~PC~C~GSlkyvH~~CL~~W~~~kg-----~~~CEICk~~y 83 (242)
....+.|-||.+...+.. + + .+|. +..=.+|+.+|...+. ...|++|+-.-
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 356899999998854422 2 2 3465 5566789999997665 68999998653
No 61
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=56.12 E-value=13 Score=40.79 Aligned_cols=52 Identities=27% Similarity=0.645 Sum_probs=34.6
Q ss_pred CCCeeEEeecCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 30 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~---~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
....|+||-++- .++.+.--|+=.| --|=+.|.+ .=.+.|+..|+.||.+|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~--FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA--FPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC--Cccccchhh-hhhhcCCccCCccCCchh
Confidence 456999998773 3555555554221 237788873 223347899999999998
No 62
>COG2322 Predicted membrane protein [Function unknown]
Probab=54.48 E-value=36 Score=30.05 Aligned_cols=55 Identities=25% Similarity=0.420 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhhcceee--cCCCCC----chHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 026193 149 RSIALIFVFLLILRHTLPVIL--SRTNDY----SFPIFLQLFLRTAGIVLPIYVMVKAVTA 203 (242)
Q Consensus 149 rs~ai~fm~lLllrh~l~~~~--~~~~~~----s~~lf~l~~Lr~aGillP~Yi~~~ai~~ 203 (242)
-+++++|.++-+.||-+.--. ++++.| -|-|++=..|-++++-|-.|.++++++-
T Consensus 83 ~~l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~Hi~LA~i~vPLal~al~~a~~~ 143 (177)
T COG2322 83 FTLALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILITHIILAAINVPLALYALILAWKG 143 (177)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc
Confidence 367888999999999877765 666654 4444444678888888889999999864
No 63
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=54.39 E-value=7.1 Score=26.38 Aligned_cols=22 Identities=23% Similarity=0.742 Sum_probs=15.9
Q ss_pred cccHHHHHHHHHHhCCcccccc
Q 026193 58 YAHRRCVQRWCNEKGNTTCEIC 79 (242)
Q Consensus 58 yvH~~CL~~W~~~kg~~~CEIC 79 (242)
-+|..|+++++..+.+.+|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 4999999999998877789877
No 64
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=53.85 E-value=4.6 Score=39.30 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=36.9
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
.-.|-||++-.. -+++.||. +-.-.-|+...++.+. .|+.|..+|.
T Consensus 23 lLRC~IC~eyf~-ip~itpCs-----HtfCSlCIR~~L~~~p--~CP~C~~~~~ 68 (442)
T KOG0287|consen 23 LLRCGICFEYFN-IPMITPCS-----HTFCSLCIRKFLSYKP--QCPTCCVTVT 68 (442)
T ss_pred HHHHhHHHHHhc-Cceecccc-----chHHHHHHHHHhccCC--CCCceecccc
Confidence 468999998765 48999976 4566788888888765 7999998875
No 65
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=52.77 E-value=18 Score=31.43 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHH--hhhcCCC
Q 026193 191 VLPIYVMVKAVTALQRHR--YQQVSPN 215 (242)
Q Consensus 191 llP~Yi~~~ai~~~q~~r--~~~~~~~ 215 (242)
++-+|+++|+++.-.+.| |+++...
T Consensus 107 l~i~yfvir~~R~r~~~rktRkYgvl~ 133 (163)
T PF06679_consen 107 LAILYFVIRTFRLRRRNRKTRKYGVLT 133 (163)
T ss_pred HHHHHHHHHHHhhccccccceeecccC
Confidence 334899999987543323 5555433
No 66
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=52.58 E-value=18 Score=29.26 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=2.5
Q ss_pred HHHhhh
Q 026193 206 RHRYQQ 211 (242)
Q Consensus 206 ~~r~~~ 211 (242)
|||++.
T Consensus 24 rRR~r~ 29 (130)
T PF12273_consen 24 RRRRRR 29 (130)
T ss_pred HHHhhc
Confidence 344443
No 67
>PLN02195 cellulose synthase A
Probab=47.82 E-value=17 Score=39.49 Aligned_cols=52 Identities=17% Similarity=0.489 Sum_probs=34.0
Q ss_pred CCCeeEEeecCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 30 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~---~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
....|+||-++- .++.+.--|+=.| --|=+.|.+ .=.+.|+..|+.||.+|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~--~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS--YPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC--Cccccchhh-hhhhcCCccCCccCCccc
Confidence 356899998763 2445444454221 237788873 233447899999999998
No 68
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=47.80 E-value=27 Score=30.46 Aligned_cols=38 Identities=26% Similarity=0.693 Sum_probs=25.8
Q ss_pred CCeeEEeecCCCCC------Cccccc---ccCCCCccccHHHHHHHHHH
Q 026193 31 LVECRICQDEDADS------NMETPC---SCCGSLKYAHRRCVQRWCNE 70 (242)
Q Consensus 31 ~~~CRIC~e~~~d~------~L~~PC---~C~GSlkyvH~~CL~~W~~~ 70 (242)
...|-||.|-.-.. .-...| -|.. .|-|..||.+..+.
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka 48 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKA 48 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCC--ccchhHHHHHHHHH
Confidence 56899998865321 123334 3654 58999999999875
No 69
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=44.34 E-value=28 Score=37.45 Aligned_cols=53 Identities=25% Similarity=0.579 Sum_probs=38.4
Q ss_pred CCCCCeeEEeecCCC--CCCcccccccCCCCccccHHHHHHHHHHh-----CCccccccccccc
Q 026193 28 PRKLVECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWCNEK-----GNTTCEICQQQFK 84 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~--d~~L~~PC~C~GSlkyvH~~CL~~W~~~k-----g~~~CEICk~~y~ 84 (242)
.+...+|-||.+.-. ...| +|+.=.+.+|..|+++|-..+ ..|+|+-|+..++
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred hcCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 345689999998743 2233 233335789999999998763 4799999997765
No 70
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=43.28 E-value=12 Score=37.19 Aligned_cols=47 Identities=26% Similarity=0.697 Sum_probs=37.3
Q ss_pred CCCeeEEeecCCC--CCCc-ccccccCCCCccccHHHHHHHHHHhCCcccccccc
Q 026193 30 KLVECRICQDEDA--DSNM-ETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQ 81 (242)
Q Consensus 30 ~~~~CRIC~e~~~--d~~L-~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~ 81 (242)
-+-.|-.|-+.-. +++| ..||+ +..|.+|++..+..++.+.|+-|+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3467888866532 2344 68998 8999999999999999999999993
No 71
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=42.25 E-value=46 Score=30.95 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHhhhhH
Q 026193 177 FPIFLQLFLRTAGIVL 192 (242)
Q Consensus 177 ~~lf~l~~Lr~aGill 192 (242)
.+|=++++|-.+||++
T Consensus 236 iALG~v~ll~l~Gii~ 251 (281)
T PF12768_consen 236 IALGTVFLLVLIGIIL 251 (281)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445556666666655
No 72
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=40.50 E-value=1.1e+02 Score=21.05 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhcceeecCCCCCchHHHHHHHHHHhhhhHHHHHHH
Q 026193 150 SIALIFVFLLILRHTLPVILSRTNDYSFPIFLQLFLRTAGIVLPIYVMV 198 (242)
Q Consensus 150 s~ai~fm~lLllrh~l~~~~~~~~~~s~~lf~l~~Lr~aGillP~Yi~~ 198 (242)
++|+|+.+||+. .+.-.+..-+|...|+|-++.++
T Consensus 3 ila~illvlliy--------------v~~kvayvalkilai~lii~~iv 37 (44)
T PF13153_consen 3 ILAIILLVLLIY--------------VFFKVAYVALKILAILLIIFLIV 37 (44)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777654 22233345577777777665554
No 73
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.15 E-value=19 Score=36.12 Aligned_cols=44 Identities=34% Similarity=0.757 Sum_probs=33.4
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
...+.|+||.++. ..-+.||. |..|+.+|...+. .|+.|+....
T Consensus 477 ~~~~~~~~~~~~~--~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM--SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH--Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhh
Confidence 4458999998776 23345655 9999999999875 7999987665
No 74
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.14 E-value=26 Score=35.54 Aligned_cols=49 Identities=24% Similarity=0.569 Sum_probs=34.2
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~---kg~~~CEICk~~y~~ 85 (242)
...|-||+++..-..+ +-|. +..=-.||.+.++. ++-..|+||...+.+
T Consensus 186 ~~~CPICL~~~~~p~~-t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR-TNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccc-cccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6799999998754222 2254 45566787776654 467899999888765
No 75
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=38.62 E-value=31 Score=26.79 Aligned_cols=54 Identities=26% Similarity=0.554 Sum_probs=22.5
Q ss_pred CCCCCeeEEeecCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 28 PRKLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 28 ~~~~~~CRIC~e~~---~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
......|.||-++- .++.+..-|+=-+ --+=+.|.+-=.++ |+..|+.||..|+
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~--fPvCr~CyEYErke-g~q~CpqCkt~yk 62 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECA--FPVCRPCYEYERKE-GNQVCPQCKTRYK 62 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-------HHHHHHHHHT-S-SB-TTT--B--
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccC--CccchhHHHHHhhc-CcccccccCCCcc
Confidence 34567999998763 3455555554222 34778887654444 6789999999987
No 76
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=37.59 E-value=2.2e+02 Score=22.99 Aligned_cols=60 Identities=17% Similarity=0.345 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhcceee---cCCCCCchHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHH
Q 026193 145 MICCRSIALIFVFLLILRHTLPVIL---SRTNDYSFPIFLQLFLR-TAGIVLPIYVMVKAVTALQRHR 208 (242)
Q Consensus 145 ~~~crs~ai~fm~lLllrh~l~~~~---~~~~~~s~~lf~l~~Lr-~aGillP~Yi~~~ai~~~q~~r 208 (242)
+..-+.+.+++.+++.+-++-++-. .|. +.++|...+++- ..|.|+-++++ ..+++|.||
T Consensus 26 vi~~gilillLllifav~Nt~~V~~~~lfg~--~~~PLilvil~s~v~G~Li~~~~~--~~Ri~~lrr 89 (98)
T COG5416 26 VIIVGILILLLLLIFAVINTDSVEFNYLFGQ--WELPLILVILGAAVVGALIAMFAG--IARILQLRR 89 (98)
T ss_pred HHHHHHHHHHHHHHHHHhccCceEEEeecch--hhhhHHHHHHHHHHHHHHHHHHHh--HHHHHHHHH
Confidence 3344444444444444445544432 333 677777766665 44555544433 335555555
No 77
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=37.23 E-value=29 Score=38.04 Aligned_cols=55 Identities=27% Similarity=0.678 Sum_probs=36.2
Q ss_pred CCCCCCeeEEeecCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 27 TPRKLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 27 s~~~~~~CRIC~e~~---~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
++-....|.||-++- .++.+.--|+=.| --|=+.|.+ .=.+.|+..|+.||..|+
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~--fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCG--FPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCC--Cccccchhh-hhhhcCCccCCccCCchh
Confidence 344678999998773 2455544454211 237778873 333457899999999998
No 78
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.91 E-value=39 Score=32.36 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=31.5
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccccccccccC
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFKPGYTA 89 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~~y~~~yt~ 89 (242)
...++|-||+.... |+-.+..-|.-|..---.. .+...|.+|++++...+-.
T Consensus 5 ~~~~eC~IC~nt~n---------~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 5 TKKKECLICYNTGN---------CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred ccCCcceeeeccCC---------cCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 45689999987643 2233444577764321111 2345699999999755443
No 79
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.72 E-value=47 Score=31.18 Aligned_cols=51 Identities=25% Similarity=0.600 Sum_probs=38.5
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHH-HHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQR-WCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~-W~~~kg~~~CEICk~~y~~ 85 (242)
+.....|-||.+..+. +.-+||. +..=-.||.. |..++- ..|++|++.-.+
T Consensus 212 p~~d~kC~lC~e~~~~-ps~t~Cg-----HlFC~~Cl~~~~t~~k~-~~CplCRak~~p 263 (271)
T COG5574 212 PLADYKCFLCLEEPEV-PSCTPCG-----HLFCLSCLLISWTKKKY-EFCPLCRAKVYP 263 (271)
T ss_pred cccccceeeeecccCC-ccccccc-----chhhHHHHHHHHHhhcc-ccCchhhhhccc
Confidence 4556789999888753 6778886 6777889988 887764 469999976543
No 80
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=35.39 E-value=26 Score=24.60 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=12.5
Q ss_pred cccccccccccccccC
Q 026193 74 TTCEICQQQFKPGYTA 89 (242)
Q Consensus 74 ~~CEICk~~y~~~yt~ 89 (242)
..|.+|++.|.+..-.
T Consensus 2 y~C~~CgyiYd~~~Gd 17 (50)
T cd00730 2 YECRICGYIYDPAEGD 17 (50)
T ss_pred cCCCCCCeEECCCCCC
Confidence 5799999999875443
No 81
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=35.17 E-value=34 Score=33.50 Aligned_cols=52 Identities=21% Similarity=0.570 Sum_probs=35.1
Q ss_pred CCCCCCeeEEeecCCC-CCCcccccccCCCCccccHHHHHHHHHHhC--Cccccccccccc
Q 026193 27 TPRKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKG--NTTCEICQQQFK 84 (242)
Q Consensus 27 s~~~~~~CRIC~e~~~-d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg--~~~CEICk~~y~ 84 (242)
|..+++.|-.|.|+-+ ...-..||.|. | +-|---|-+.+. +-+|+-|+..|.
T Consensus 10 sedeed~cplcie~mditdknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccccCcccccccccccCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhcc
Confidence 4456677999998854 22446799983 3 344444765543 568999999885
No 82
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.72 E-value=43 Score=29.82 Aligned_cols=50 Identities=18% Similarity=0.537 Sum_probs=34.3
Q ss_pred CCCCCCeeEEeecCCCCC-CcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 026193 27 TPRKLVECRICQDEDADS-NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83 (242)
Q Consensus 27 s~~~~~~CRIC~e~~~d~-~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y 83 (242)
......-|-||++..++. +.-+=|. +.+=++|++.-++. ..+|++|+.+.
T Consensus 127 ~~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkI 177 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKI 177 (187)
T ss_pred ccccccCCCceecchhhccccccccc-----hhHHHHHHHHHHHh--CCCCCCccccc
Confidence 345558899999987542 3334444 56677888776654 46899999744
No 83
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=33.68 E-value=18 Score=23.71 Aligned_cols=18 Identities=17% Similarity=0.619 Sum_probs=13.3
Q ss_pred cccccccccccccccCCC
Q 026193 74 TTCEICQQQFKPGYTAPP 91 (242)
Q Consensus 74 ~~CEICk~~y~~~yt~p~ 91 (242)
+.|+-|+..|...|..|.
T Consensus 2 r~C~~Cg~~Yh~~~~pP~ 19 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPPK 19 (36)
T ss_dssp EEETTTTEEEETTTB--S
T ss_pred cCcCCCCCccccccCCCC
Confidence 579999999997776553
No 84
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=33.33 E-value=33 Score=31.92 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=35.7
Q ss_pred hhccCCCchhHHHHHHHHHHHHHHHhhhcceee-cCCCCCchHHHHHHHHHHhhhhHHHHHHHHHHH
Q 026193 137 YSASNTRSMICCRSIALIFVFLLILRHTLPVIL-SRTNDYSFPIFLQLFLRTAGIVLPIYVMVKAVT 202 (242)
Q Consensus 137 ~~~~~~~~~~~crs~ai~fm~lLllrh~l~~~~-~~~~~~s~~lf~l~~Lr~aGillP~Yi~~~ai~ 202 (242)
|.-.+.-|..+.|.=+|+|.+|-++=-++++.+ .|+-.|+...--++++=+.+|++=++.++|+++
T Consensus 183 CrKvSSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~y 249 (256)
T PF09788_consen 183 CRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIY 249 (256)
T ss_pred CceeccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhhe
Confidence 433344455688888888777765555555543 444433322211223333445566677778764
No 85
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.10 E-value=2.1e+02 Score=27.54 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHhhhhHHHH---HHHHHH
Q 026193 182 QLFLRTAGIVLPIY---VMVKAV 201 (242)
Q Consensus 182 l~~Lr~aGillP~Y---i~~~ai 201 (242)
...|-.+..+|++| +|+|..
T Consensus 263 ~~~lL~~Lqll~i~W~~lI~rm~ 285 (318)
T KOG1607|consen 263 FNCLLLALQLLHIYWFYLILRMA 285 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666665 444443
No 86
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.69 E-value=27 Score=34.25 Aligned_cols=72 Identities=21% Similarity=0.425 Sum_probs=45.2
Q ss_pred CCCCCCcccccCCcCccCCCCCCCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 5 PLAVDDSKADYSSPNVEFGDISTPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 5 ~~~~~~~~~~~s~~~~~~~~~~s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
|......+.+.+...+..+++.-....-.|-||..-.. .+..+||.=+- =..||++=.+ ....|++|+..|.
T Consensus 58 ~~~~~~e~~~~~~~~~~~s~~~~~~sef~c~vc~~~l~-~pv~tpcghs~-----c~~Cl~r~ld--~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 58 PGKSSEETMADSTPKALLSGPEEIRSEFECCVCSRALY-PPVVTPCGHSF-----CLECLDRSLD--QETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhhhhhhhhhhccCccccchhhhhhhHhhcC-CCccccccccc-----cHHHHHHHhc--cCCCCcccccccc
Confidence 44455555555666554444444456788999955543 46778987332 2337777233 5678999999986
No 87
>PF04532 DUF587: Protein of unknown function (DUF587); InterPro: IPR007618 This domain is found at the N-termini of some human herpesvirus U58 proteins, and some cytomegalovirus UL87 proteins. This region is always found N-terminal to the UL87 (IPR004285 from INTERPRO), which has no known function.
Probab=32.54 E-value=16 Score=33.05 Aligned_cols=27 Identities=41% Similarity=0.810 Sum_probs=20.1
Q ss_pred eecCCCCC--C-cccccccCCCCccccH-HH
Q 026193 37 CQDEDADS--N-METPCSCCGSLKYAHR-RC 63 (242)
Q Consensus 37 C~e~~~d~--~-L~~PC~C~GSlkyvH~-~C 63 (242)
|..++.|. . .+.++.|.|.+-|||+ .|
T Consensus 93 CyCdeWd~~eyl~~~~~~C~GP~LYVhr~rC 123 (215)
T PF04532_consen 93 CYCDEWDTNEYLAECAYFCRGPLLYVHRKRC 123 (215)
T ss_pred eeecceehhhHHhhCCcccCCceEEEEccce
Confidence 55555442 2 4799999999999999 45
No 88
>PLN02400 cellulose synthase
Probab=32.15 E-value=35 Score=37.60 Aligned_cols=53 Identities=21% Similarity=0.551 Sum_probs=34.2
Q ss_pred CCCCeeEEeecCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~---~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
.....|+||-++- .++.+.--|+=.| --|=|.|.+- =.+.|+..|+.||.+|+
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCa--FPVCRpCYEY-ERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECA--FPVCRPCYEY-ERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCC--Cccccchhhe-ecccCCccCcccCCccc
Confidence 3456999998773 3555554554221 2266778632 22347899999999998
No 89
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=31.52 E-value=19 Score=19.58 Aligned_cols=11 Identities=36% Similarity=1.129 Sum_probs=7.2
Q ss_pred ccccccccccc
Q 026193 75 TCEICQQQFKP 85 (242)
Q Consensus 75 ~CEICk~~y~~ 85 (242)
.|++|+..|..
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 69999998863
No 90
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=29.83 E-value=26 Score=21.48 Aligned_cols=12 Identities=25% Similarity=0.675 Sum_probs=10.0
Q ss_pred Cccccccccccc
Q 026193 73 NTTCEICQQQFK 84 (242)
Q Consensus 73 ~~~CEICk~~y~ 84 (242)
...|+.|++.|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 468999999885
No 91
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.13 E-value=36 Score=32.69 Aligned_cols=27 Identities=22% Similarity=0.600 Sum_probs=21.9
Q ss_pred cccHHHHHHHHHH-----------hCCccccccccccc
Q 026193 58 YAHRRCVQRWCNE-----------KGNTTCEICQQQFK 84 (242)
Q Consensus 58 yvH~~CL~~W~~~-----------kg~~~CEICk~~y~ 84 (242)
.--++||.+|+.. +|+-.|+.|++.|-
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 4568999999964 36789999999885
No 92
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=28.40 E-value=26 Score=25.00 Aligned_cols=28 Identities=18% Similarity=0.454 Sum_probs=18.4
Q ss_pred CccccHHHHHHHHHHhCCcccccccccccc
Q 026193 56 LKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 56 lkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
-+|.=..||..-+..+ ..|+||+++.+.
T Consensus 20 dHYLCl~CLt~ml~~s--~~C~iC~~~LPt 47 (50)
T PF03854_consen 20 DHYLCLNCLTLMLSRS--DRCPICGKPLPT 47 (50)
T ss_dssp S-EEEHHHHHHT-SSS--SEETTTTEE---
T ss_pred chhHHHHHHHHHhccc--cCCCcccCcCcc
Confidence 3788889988776655 489999988753
No 93
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=27.81 E-value=62 Score=37.72 Aligned_cols=55 Identities=22% Similarity=0.450 Sum_probs=38.0
Q ss_pred CCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHh--------CCccccccccccc
Q 026193 27 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK--------GNTTCEICQQQFK 84 (242)
Q Consensus 27 s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~k--------g~~~CEICk~~y~ 84 (242)
+....+.|-||+.+--. ..||---|--+..|..|..+-+..+ +...|+||+.+..
T Consensus 3482 kQD~DDmCmICFTE~L~---AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALS---AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhC---CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 34556899999987421 1444333334889999998766554 5789999998875
No 94
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.18 E-value=1e+02 Score=28.78 Aligned_cols=50 Identities=20% Similarity=0.496 Sum_probs=34.8
Q ss_pred CCCeeEEeecCCCCCC-cccccccCCCCccccHHHHHHHHHHh------CCccccccccccc
Q 026193 30 KLVECRICQDEDADSN-METPCSCCGSLKYAHRRCVQRWCNEK------GNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~-L~~PC~C~GSlkyvH~~CL~~W~~~k------g~~~CEICk~~y~ 84 (242)
-...||.|-....++. ...-| .+..|-+||..|-..= ....|+-|..+.-
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvC-----yhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVC-----YHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCcceeehh-----hhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3567999976644332 23334 3789999999998652 3578999998753
No 95
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=27.12 E-value=41 Score=29.73 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 026193 190 IVLPIYVMVKAVTALQRHRYQQ 211 (242)
Q Consensus 190 illP~Yi~~~ai~~~q~~r~~~ 211 (242)
+.+|-.+++-.+..+||||+++
T Consensus 161 ~yiPAlLLL~lv~~lQrRR~~~ 182 (183)
T PF11874_consen 161 VYIPALLLLGLVAWLQRRRRRK 182 (183)
T ss_pred EeHHHHHHHHHHHHHhhhhccC
Confidence 3456777777778899999775
No 96
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=25.72 E-value=76 Score=24.05 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=12.4
Q ss_pred HhhhhHHHHHHHHHHH
Q 026193 187 TAGIVLPIYVMVKAVT 202 (242)
Q Consensus 187 ~aGillP~Yi~~~ai~ 202 (242)
..|+.++.||+++.+-
T Consensus 45 ~~~~~ii~Yiia~~im 60 (70)
T COG1983 45 LTGFGIIAYIIAALIM 60 (70)
T ss_pred chhHHHHHHHHHHHHC
Confidence 3477888999998863
No 97
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=25.19 E-value=26 Score=19.50 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=9.2
Q ss_pred ccccccccccc
Q 026193 75 TCEICQQQFKP 85 (242)
Q Consensus 75 ~CEICk~~y~~ 85 (242)
.|+.|+..|..
T Consensus 2 ~C~~C~~~f~~ 12 (23)
T PF00096_consen 2 KCPICGKSFSS 12 (23)
T ss_dssp EETTTTEEESS
T ss_pred CCCCCCCccCC
Confidence 69999999874
No 98
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=24.95 E-value=1e+02 Score=26.44 Aligned_cols=53 Identities=25% Similarity=0.356 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhhcceeecCCCCCchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026193 150 SIALIFVFLLILRHTLPVILSRTNDYSFPIFLQLFLRTAGIVLPIYVMVKAVTALQRHR 208 (242)
Q Consensus 150 s~ai~fm~lLllrh~l~~~~~~~~~~s~~lf~l~~Lr~aGillP~Yi~~~ai~~~q~~r 208 (242)
...++|.+||++|-++-..+++.-+ .-.+-.++++-|.|.++| |=++.+.+-|
T Consensus 94 aF~~ili~LlviR~~l~~~l~~~i~-~~~~~~mFf~lAfgmIvp-----WRiamy~kyr 146 (148)
T PF07301_consen 94 AFIFILIGLLVIRIVLKSYLSGSID-PGQLSGMFFLLAFGMIVP-----WRIAMYIKYR 146 (148)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 3478889999999998888876322 223334455566665554 5555554444
No 99
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=23.65 E-value=52 Score=22.89 Aligned_cols=21 Identities=29% Similarity=0.760 Sum_probs=13.5
Q ss_pred hCCccccccccccc-ccccCCC
Q 026193 71 KGNTTCEICQQQFK-PGYTAPP 91 (242)
Q Consensus 71 kg~~~CEICk~~y~-~~yt~p~ 91 (242)
+-..+||+|+..-. ..|..||
T Consensus 5 Rs~~kCELC~a~~~L~vy~Vpp 26 (47)
T smart00782 5 RCESKCELCGSDSPLVVYAVPP 26 (47)
T ss_pred HcCCcccCcCCCCCceEEecCC
Confidence 33457999997655 3455554
No 100
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=23.35 E-value=97 Score=30.60 Aligned_cols=55 Identities=18% Similarity=0.436 Sum_probs=35.0
Q ss_pred CCCCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 25 ISTPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 25 ~~s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
++..++...|-||-+...- .-+.||. +-.-.-|--|...-=....|.+|+.+...
T Consensus 55 ddtDEen~~C~ICA~~~TY-s~~~PC~-----H~~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 55 DDTDEENMNCQICAGSTTY-SARYPCG-----HQICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred cccccccceeEEecCCceE-EEeccCC-----chHHHHHHHHHHHHHhccCCCccccccce
Confidence 4446678899999776532 3468987 22233454444443345679999998863
No 101
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=23.34 E-value=1.8e+02 Score=26.52 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=22.6
Q ss_pred HHHHHHhhhcceeecCCCCCchHHHHHHHH
Q 026193 156 VFLLILRHTLPVILSRTNDYSFPIFLQLFL 185 (242)
Q Consensus 156 m~lLllrh~l~~~~~~~~~~s~~lf~l~~L 185 (242)
+..|.+||++.-+.+=....+.-+|.+.++
T Consensus 110 Y~~L~~R~~lvPv~~~gSn~a~~l~i~Gil 139 (226)
T COG2738 110 YAFLVLRHALVPVANFGSNLAPLLFILGIL 139 (226)
T ss_pred cHHHHHhhcccceeccccchhHHHHHHHHH
Confidence 457899999988877666777777776543
No 102
>PHA03375 hypothetical protein; Provisional
Probab=23.16 E-value=28 Score=36.83 Aligned_cols=27 Identities=37% Similarity=0.754 Sum_probs=19.9
Q ss_pred eecCCCC--CC-cccccccCCCCccccHHH
Q 026193 37 CQDEDAD--SN-METPCSCCGSLKYAHRRC 63 (242)
Q Consensus 37 C~e~~~d--~~-L~~PC~C~GSlkyvH~~C 63 (242)
|..+++| .. ...+|.|.|.+-|||+++
T Consensus 99 CycdeWd~~eyl~~~~~~C~gP~LYvhr~r 128 (844)
T PHA03375 99 CYCDEWDVNEYLAKTACNCRGPLLYIHRSR 128 (844)
T ss_pred ccccchhhhhhhhhcccccCCceEEEEecc
Confidence 5555543 22 479999999999999943
No 103
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=22.79 E-value=43 Score=35.55 Aligned_cols=56 Identities=27% Similarity=0.557 Sum_probs=38.8
Q ss_pred CCCeeEEeecCCCCCC----cccccccCCCCccccHHHHHHH---HHHh-----CCcccccccccccc
Q 026193 30 KLVECRICQDEDADSN----METPCSCCGSLKYAHRRCVQRW---CNEK-----GNTTCEICQQQFKP 85 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~----L~~PC~C~GSlkyvH~~CL~~W---~~~k-----g~~~CEICk~~y~~ 85 (242)
..+.|.||.|++.++. --.-|+=.|=-+-+|-.|.|+- +.|. +...|--|+|.|..
T Consensus 116 fnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 116 FNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSK 183 (900)
T ss_pred hcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHH
Confidence 4589999998864432 2234554444578999999875 3443 35789999999963
No 104
>PF05210 Sprouty: Sprouty protein (Spry); InterPro: IPR007875 Sprouty (Spry) and Spred (Sprouty related EVH1 domain) proteins have been identified as inhibitors of the Ras/mitogen-activated protein kinase (MAPK) cascade, a pathway crucial for developmental processes initiated by activation of various receptor tyrosine kinases [1,2]. These proteins share a conserved, C-terminal cysteine-rich region, the SPR domain. This domain has been defined as a novel cytosol to membrane translocation domain [, , , ]. It has been found to be a PtdIns(4,5)P2-binding domain that targets the proteins to a cellular localization that maximizes their inhibitory potential [, ]. It also mediates homodimer formation of these proteins [, ]. The SPR domain can occur in association with the WH1 domain (see IPR000697 from INTERPRO) (located in the N-terminal part of the proteins) in the Spred proteins.; GO: 0007275 multicellular organismal development, 0009966 regulation of signal transduction, 0016020 membrane
Probab=21.69 E-value=64 Score=26.34 Aligned_cols=19 Identities=42% Similarity=1.050 Sum_probs=15.7
Q ss_pred ccccccCCCCccccHHHHHHHHHH
Q 026193 47 ETPCSCCGSLKYAHRRCVQRWCNE 70 (242)
Q Consensus 47 ~~PC~C~GSlkyvH~~CL~~W~~~ 70 (242)
..||+|.. +..|..||.--
T Consensus 59 d~PCSC~~-----~~~c~~RW~~L 77 (108)
T PF05210_consen 59 DHPCSCDT-----PSRCCARWLAL 77 (108)
T ss_pred CCccccCC-----ccchHHHHHHH
Confidence 45999976 88999999854
No 105
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.99 E-value=2.7e+02 Score=26.33 Aligned_cols=8 Identities=0% Similarity=0.239 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 026193 194 IYVMVKAV 201 (242)
Q Consensus 194 ~Yi~~~ai 201 (242)
+|++.|.+
T Consensus 55 ~~~~~~~~ 62 (398)
T PRK10747 55 LFAIEWLL 62 (398)
T ss_pred HHHHHHHH
Confidence 34444444
No 106
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=20.91 E-value=65 Score=22.27 Aligned_cols=35 Identities=17% Similarity=0.494 Sum_probs=14.4
Q ss_pred CcccccccCCCCccccHHHH--HHHHHH---hCCccccccccc
Q 026193 45 NMETPCSCCGSLKYAHRRCV--QRWCNE---KGNTTCEICQQQ 82 (242)
Q Consensus 45 ~L~~PC~C~GSlkyvH~~CL--~~W~~~---kg~~~CEICk~~ 82 (242)
.+..|++= ..-.|..|. ..|+.. ++.+.|++|++.
T Consensus 11 ~i~~P~Rg---~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 11 RIRIPVRG---KNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-SSEEEE---TT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred EEEeCccC---CcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 45566552 356788885 456653 567999999863
No 107
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=20.78 E-value=1.7e+02 Score=23.82 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 026193 149 RSIALIFVFLLIL 161 (242)
Q Consensus 149 rs~ai~fm~lLll 161 (242)
|-+..+|+..|.+
T Consensus 70 RGlfyif~G~l~~ 82 (136)
T PF08507_consen 70 RGLFYIFLGTLCL 82 (136)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 108
>COG4846 CcdC Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=20.64 E-value=1.4e+02 Score=25.75 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhcceeecCCCCCchHHHHHHHHHHhhhhHHHHH
Q 026193 152 ALIFVFLLILRHTLPVILSRTNDYSFPIFLQLFLRTAGIVLPIYV 196 (242)
Q Consensus 152 ai~fm~lLllrh~l~~~~~~~~~~s~~lf~l~~Lr~aGillP~Yi 196 (242)
..|++-||++|-++-...++.-++. .|--+|++-|.|.++|-=+
T Consensus 97 ~~ILigLLiiRi~~K~~is~sid~g-eLsGMF~ilAf~MIvPWRi 140 (163)
T COG4846 97 PVILIGLLIIRIVMKYIISGSIDVG-ELSGMFWILAFGMIVPWRI 140 (163)
T ss_pred hhHHHHHHHHHHHHHHHHcCCccHH-HhhhHHHHHHHHhhhHHHH
Confidence 6788999999999999888776653 3334556667787777543
Done!