Query 026193
Match_columns 242
No_of_seqs 223 out of 794
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 2.8E-19 9.7E-24 127.7 3.6 56 29-85 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 2.1E-17 7.4E-22 124.0 5.4 65 28-92 12-77 (80)
3 1v87_A Deltex protein 2; ring- 98.0 5E-06 1.7E-10 63.6 4.1 51 31-86 25-95 (114)
4 2ep4_A Ring finger protein 24; 98.0 1E-05 3.6E-10 57.3 5.5 50 29-85 13-64 (74)
5 2kiz_A E3 ubiquitin-protein li 98.0 5.7E-06 1.9E-10 58.0 3.9 52 27-85 10-63 (69)
6 2ect_A Ring finger protein 126 97.9 5.1E-06 1.7E-10 59.5 2.9 52 28-86 12-65 (78)
7 1x4j_A Ring finger protein 38; 97.9 7E-06 2.4E-10 58.6 3.3 51 28-85 20-72 (75)
8 2ecm_A Ring finger and CHY zin 97.9 5.4E-06 1.8E-10 55.4 2.1 49 29-84 3-54 (55)
9 2l0b_A E3 ubiquitin-protein li 97.9 7.7E-06 2.6E-10 61.0 3.1 51 28-85 37-89 (91)
10 1chc_A Equine herpes virus-1 r 97.7 2.2E-05 7.6E-10 54.6 3.6 49 30-85 4-52 (68)
11 2ecl_A Ring-box protein 2; RNF 97.7 8.9E-06 3.1E-10 59.6 1.4 27 57-85 50-76 (81)
12 1iym_A EL5; ring-H2 finger, ub 97.6 1E-05 3.4E-10 54.1 0.8 48 30-84 4-54 (55)
13 2ea6_A Ring finger protein 4; 97.6 1.3E-05 4.6E-10 55.4 1.4 50 28-84 12-67 (69)
14 2ct2_A Tripartite motif protei 97.6 4.2E-05 1.4E-09 55.4 4.1 53 28-85 12-68 (88)
15 2d8t_A Dactylidin, ring finger 97.6 1.2E-05 4.1E-10 56.9 1.1 52 27-86 11-62 (71)
16 2ecv_A Tripartite motif-contai 97.6 9.1E-05 3.1E-09 52.8 5.3 52 28-85 16-71 (85)
17 2ecw_A Tripartite motif-contai 97.5 6.3E-05 2.1E-09 53.7 4.0 52 28-85 16-71 (85)
18 2yur_A Retinoblastoma-binding 97.5 3.6E-05 1.2E-09 55.0 2.6 50 29-84 13-63 (74)
19 2ysl_A Tripartite motif-contai 97.5 4E-05 1.4E-09 53.9 2.7 52 28-85 17-69 (73)
20 2ecn_A Ring finger protein 141 97.5 2.3E-05 8E-10 54.9 1.4 49 28-85 12-60 (70)
21 2ct0_A Non-SMC element 1 homol 97.5 7.5E-05 2.6E-09 55.2 3.7 52 29-85 13-64 (74)
22 3ng2_A RNF4, snurf, ring finge 97.5 2E-05 6.8E-10 55.0 0.3 52 27-85 6-63 (71)
23 2ecy_A TNF receptor-associated 97.4 7.3E-05 2.5E-09 52.0 2.6 51 28-85 12-62 (66)
24 2csy_A Zinc finger protein 183 97.4 0.00012 4.2E-09 52.7 3.8 48 29-84 13-60 (81)
25 2xeu_A Ring finger protein 4; 97.4 2.3E-05 7.9E-10 53.4 -0.3 49 30-85 2-56 (64)
26 3dpl_R Ring-box protein 1; ubi 97.3 9.1E-05 3.1E-09 57.7 2.7 48 30-84 36-100 (106)
27 3ztg_A E3 ubiquitin-protein li 97.3 0.00014 4.7E-09 53.5 3.4 51 28-84 10-61 (92)
28 2djb_A Polycomb group ring fin 97.3 0.00015 5E-09 51.3 3.2 50 29-85 13-62 (72)
29 2ysj_A Tripartite motif-contai 97.3 0.0002 7E-09 49.1 3.7 46 28-79 17-63 (63)
30 1t1h_A Gspef-atpub14, armadill 97.3 0.00013 4.5E-09 52.0 2.7 51 28-85 5-55 (78)
31 2ecj_A Tripartite motif-contai 97.2 0.00021 7.1E-09 47.9 3.0 46 28-79 12-58 (58)
32 2egp_A Tripartite motif-contai 97.0 0.00014 4.7E-09 51.7 0.7 52 28-85 9-65 (79)
33 4a0k_B E3 ubiquitin-protein li 96.9 0.00017 5.8E-09 57.4 0.5 47 31-84 48-111 (117)
34 3lrq_A E3 ubiquitin-protein li 96.9 0.00031 1.1E-08 53.0 1.7 49 30-85 21-70 (100)
35 1g25_A CDK-activating kinase a 96.8 0.00031 1.1E-08 48.6 1.1 49 31-85 3-55 (65)
36 1e4u_A Transcriptional repress 96.7 0.001 3.6E-08 48.8 3.6 54 28-85 8-62 (78)
37 1jm7_A BRCA1, breast cancer ty 96.7 0.00081 2.8E-08 50.7 2.9 49 31-85 21-70 (112)
38 3fl2_A E3 ubiquitin-protein li 96.7 0.0008 2.7E-08 52.3 2.8 48 31-85 52-99 (124)
39 2y43_A E3 ubiquitin-protein li 96.6 0.0005 1.7E-08 51.3 1.2 48 30-85 21-69 (99)
40 4ayc_A E3 ubiquitin-protein li 96.5 0.00048 1.6E-08 54.8 0.6 45 32-84 54-98 (138)
41 2ckl_B Ubiquitin ligase protei 96.5 0.00069 2.4E-08 55.1 1.4 47 31-84 54-101 (165)
42 4ap4_A E3 ubiquitin ligase RNF 96.5 0.00034 1.1E-08 53.6 -0.5 50 29-85 5-60 (133)
43 1rmd_A RAG1; V(D)J recombinati 96.5 0.00051 1.8E-08 52.7 0.4 50 29-85 21-70 (116)
44 1z6u_A NP95-like ring finger p 96.3 0.0017 5.8E-08 52.8 2.4 50 30-86 77-126 (150)
45 2ckl_A Polycomb group ring fin 96.2 0.00081 2.8E-08 51.0 0.3 48 30-85 14-62 (108)
46 3hct_A TNF receptor-associated 96.2 0.0018 6.1E-08 50.0 1.9 51 28-85 15-65 (118)
47 3k1l_B Fancl; UBC, ring, RWD, 95.9 0.003 1E-07 59.4 2.3 57 28-87 305-375 (381)
48 2y1n_A E3 ubiquitin-protein li 95.8 0.0036 1.2E-07 59.1 2.7 48 31-85 332-379 (389)
49 3l11_A E3 ubiquitin-protein li 95.6 0.00082 2.8E-08 51.4 -2.2 50 29-85 13-62 (115)
50 4ap4_A E3 ubiquitin ligase RNF 95.6 0.0018 6E-08 49.5 -0.5 50 29-85 70-125 (133)
51 2c2l_A CHIP, carboxy terminus 94.4 0.02 7E-07 48.7 2.8 49 29-84 206-254 (281)
52 2kr4_A Ubiquitin conjugation f 94.2 0.04 1.4E-06 40.4 3.7 50 28-85 11-60 (85)
53 1jm7_B BARD1, BRCA1-associated 94.2 0.0096 3.3E-07 45.8 0.3 45 30-84 21-66 (117)
54 2yu4_A E3 SUMO-protein ligase 94.1 0.032 1.1E-06 41.6 3.1 51 26-82 2-59 (94)
55 4ic3_A E3 ubiquitin-protein li 94.0 0.0079 2.7E-07 42.9 -0.4 43 31-85 24-67 (74)
56 3knv_A TNF receptor-associated 94.0 0.0065 2.2E-07 48.9 -1.0 49 28-83 28-76 (141)
57 2vje_B MDM4 protein; proto-onc 93.8 0.017 5.7E-07 40.2 0.9 49 29-84 5-55 (63)
58 2vje_A E3 ubiquitin-protein li 93.6 0.02 6.8E-07 39.9 1.1 49 29-84 6-56 (64)
59 2kre_A Ubiquitin conjugation f 93.6 0.047 1.6E-06 41.5 3.1 50 28-85 26-75 (100)
60 3hcs_A TNF receptor-associated 93.4 0.029 9.9E-07 45.5 1.9 51 28-85 15-65 (170)
61 1bor_A Transcription factor PM 92.8 0.021 7.3E-07 38.5 0.1 45 29-84 4-48 (56)
62 3nw0_A Non-structural maintena 92.5 0.061 2.1E-06 47.1 2.7 49 30-84 179-228 (238)
63 1wim_A KIAA0161 protein; ring 92.4 0.051 1.7E-06 40.0 1.8 49 30-83 4-62 (94)
64 2ecg_A Baculoviral IAP repeat- 92.0 0.07 2.4E-06 37.9 2.0 43 31-85 25-68 (75)
65 2f42_A STIP1 homology and U-bo 91.6 0.074 2.5E-06 45.0 2.1 50 29-85 104-153 (179)
66 1wgm_A Ubiquitin conjugation f 91.4 0.11 3.9E-06 39.2 2.9 50 29-85 20-69 (98)
67 2ea5_A Cell growth regulator w 91.4 0.19 6.4E-06 35.5 3.8 45 29-85 13-58 (68)
68 3t6p_A Baculoviral IAP repeat- 85.0 0.11 3.6E-06 48.0 -1.5 44 30-85 294-338 (345)
69 2yho_A E3 ubiquitin-protein li 79.7 0.32 1.1E-05 35.2 -0.3 43 31-85 18-61 (79)
70 2lri_C Autoimmune regulator; Z 79.6 0.54 1.9E-05 33.5 0.9 52 26-83 7-60 (66)
71 2bay_A PRE-mRNA splicing facto 78.9 0.78 2.7E-05 31.7 1.5 45 32-84 4-49 (61)
72 3htk_C E3 SUMO-protein ligase 78.8 0.56 1.9E-05 42.2 0.9 51 29-85 179-232 (267)
73 2ysm_A Myeloid/lymphoid or mix 67.9 0.65 2.2E-05 35.4 -1.2 52 26-80 2-55 (111)
74 1weu_A Inhibitor of growth fam 61.6 2.9 9.9E-05 31.7 1.3 53 25-83 30-86 (91)
75 2ku3_A Bromodomain-containing 58.7 1.2 4.1E-05 32.1 -1.2 52 28-82 13-66 (71)
76 2l43_A N-teminal domain from h 54.1 1.3 4.4E-05 33.1 -1.8 54 28-83 22-76 (88)
77 2k16_A Transcription initiatio 50.8 1.1 3.7E-05 31.9 -2.6 53 29-84 16-70 (75)
78 1weo_A Cellulose synthase, cat 50.7 23 0.0008 27.1 4.8 52 30-84 15-69 (93)
79 2ko5_A Ring finger protein Z; 49.2 8.3 0.00028 29.9 2.1 55 25-88 22-76 (99)
80 1f62_A Transcription factor WS 47.8 2.9 9.8E-05 27.5 -0.6 46 33-81 2-49 (51)
81 2yql_A PHD finger protein 21A; 46.6 1.1 3.6E-05 30.5 -3.0 50 26-81 4-55 (56)
82 1wen_A Inhibitor of growth fam 44.2 4.3 0.00015 29.1 -0.2 51 27-83 12-66 (71)
83 2l5u_A Chromodomain-helicase-D 43.7 4.2 0.00014 28.1 -0.4 49 28-82 8-58 (61)
84 2jwa_A Receptor tyrosine-prote 41.3 38 0.0013 22.5 4.1 28 184-212 15-42 (44)
85 2vpb_A Hpygo1, pygopus homolog 39.5 8.5 0.00029 27.1 0.7 36 26-64 3-40 (65)
86 3u5n_A E3 ubiquitin-protein li 34.7 2.4 8.1E-05 35.7 -3.4 49 30-84 6-56 (207)
87 2ri7_A Nucleosome-remodeling f 34.5 4.9 0.00017 32.5 -1.4 52 28-83 5-60 (174)
88 6rxn_A Rubredoxin; electron tr 33.8 20 0.00069 23.8 1.8 18 73-90 4-21 (46)
89 2lbm_A Transcriptional regulat 33.3 19 0.00066 29.2 2.0 47 28-80 60-115 (142)
90 2yt5_A Metal-response element- 30.9 2.7 9.3E-05 29.0 -3.0 52 28-82 3-61 (66)
91 3ql9_A Transcriptional regulat 29.8 28 0.00094 27.9 2.3 47 28-80 54-109 (129)
92 3v43_A Histone acetyltransfera 28.4 19 0.00067 27.3 1.2 34 30-66 4-43 (112)
93 1e8j_A Rubredoxin; iron-sulfur 27.1 46 0.0016 22.4 2.7 16 73-88 3-18 (52)
94 3o36_A Transcription intermedi 26.8 5.2 0.00018 32.8 -2.5 49 30-84 3-53 (184)
95 1wev_A Riken cDNA 1110020M19; 26.4 2.5 8.5E-05 31.4 -4.1 52 30-84 15-74 (88)
96 1wep_A PHF8; structural genomi 26.2 51 0.0017 23.4 3.0 53 29-85 10-66 (79)
97 2lv9_A Histone-lysine N-methyl 25.9 9.7 0.00033 28.6 -1.0 50 28-81 25-75 (98)
98 1znf_A 31ST zinc finger from X 25.1 24 0.00083 17.9 0.9 12 74-85 2-13 (27)
99 1dx8_A Rubredoxin; electron tr 25.0 80 0.0027 22.5 3.9 15 73-87 7-21 (70)
100 2vnf_A ING 4, P29ING4, inhibit 23.4 2.8 9.5E-05 29.0 -4.1 48 28-81 7-58 (60)
101 1ard_A Yeast transcription fac 23.1 27 0.00093 17.9 0.8 12 74-85 3-14 (29)
102 4rxn_A Rubredoxin; electron tr 22.6 40 0.0014 23.1 1.7 16 73-88 3-18 (54)
103 2jny_A Uncharacterized BCR; st 22.5 23 0.00077 25.3 0.5 32 45-86 10-41 (67)
104 2lvu_A Zinc finger and BTB dom 27.0 20 0.00067 18.3 0.0 12 74-85 3-14 (26)
105 2e6r_A Jumonji/ARID domain-con 21.3 4.2 0.00014 30.4 -3.8 51 29-82 14-66 (92)
106 2kvh_A Zinc finger and BTB dom 21.2 26 0.00089 18.0 0.5 12 74-85 4-15 (27)
107 1jb0_I Photosystem 1 reaction 20.9 1.3E+02 0.0045 19.4 3.8 33 173-205 3-35 (38)
108 2m0f_A Zinc finger and BTB dom 20.9 29 0.00098 17.7 0.6 11 74-84 3-13 (29)
109 1xwh_A Autoimmune regulator; P 20.0 6.2 0.00021 27.5 -2.9 49 28-82 5-55 (66)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=2.8e-19 Score=127.72 Aligned_cols=56 Identities=30% Similarity=0.767 Sum_probs=50.6
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
++...||||+++.+ ++++.||+|+||++|||+.||++|++++++..||+|+++|+.
T Consensus 4 ~~~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 35789999998854 468999999999999999999999999999999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-17 Score=123.98 Aligned_cols=65 Identities=35% Similarity=0.836 Sum_probs=56.1
Q ss_pred CCCCCeeEEeecCCC-CCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccccccCCCC
Q 026193 28 PRKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYTAPPP 92 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~-d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~~yt~p~~ 92 (242)
+.+...|+||+++.+ ++.++.||+|+|+++++|+.||++|+..+++..||+|++.|....+.+|+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCC
Confidence 456789999998754 45789999999999999999999999999989999999999876655443
No 3
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.98 E-value=5e-06 Score=63.63 Aligned_cols=51 Identities=24% Similarity=0.479 Sum_probs=39.1
Q ss_pred CCeeEEeecCCCCCC--------------c---ccccccCCCCccccHHHHHHHHHH---hCCccccccccccccc
Q 026193 31 LVECRICQDEDADSN--------------M---ETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKPG 86 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~--------------L---~~PC~C~GSlkyvH~~CL~~W~~~---kg~~~CEICk~~y~~~ 86 (242)
...|-||++...+.. . ..||. +.+|..||.+|+.. +....|++|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 458999998753211 1 56776 78999999999975 4567999999999754
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=1e-05 Score=57.31 Aligned_cols=50 Identities=20% Similarity=0.596 Sum_probs=38.7
Q ss_pred CCCCeeEEeecCCCCCC--cccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~--L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.....|.||++...+.. ...||. +.+|..|+.+|++.+. .|++|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 45678999999865433 234764 7899999999998764 89999998864
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.96 E-value=5.7e-06 Score=57.95 Aligned_cols=52 Identities=23% Similarity=0.586 Sum_probs=40.4
Q ss_pred CCCCCCeeEEeecCCCC--CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 27 TPRKLVECRICQDEDAD--SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 27 s~~~~~~CRIC~e~~~d--~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.......|.||++...+ .....||. +.+|..|+.+|++.++ .|++|+..+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccC
Confidence 34567889999987543 34567875 6799999999998864 69999998864
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.91 E-value=5.1e-06 Score=59.51 Aligned_cols=52 Identities=21% Similarity=0.691 Sum_probs=40.1
Q ss_pred CCCCCeeEEeecCCCCCC--cccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 026193 28 PRKLVECRICQDEDADSN--METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 86 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~--L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~~ 86 (242)
......|.||++...+.. ...||. +.+|..|+.+|++.+ ..|++|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCc
Confidence 455689999998865332 346765 789999999999755 5899999998754
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.88 E-value=7e-06 Score=58.61 Aligned_cols=51 Identities=25% Similarity=0.641 Sum_probs=40.1
Q ss_pred CCCCCeeEEeecCCCCC--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~--~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..+...|.||++...+. ....||. +.+|..|+.+|++.+ ..|++|++.+.+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 45678999999886543 2567875 789999999999875 489999988764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.85 E-value=5.4e-06 Score=55.36 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=38.9
Q ss_pred CCCCeeEEeecCCCC---CCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDAD---SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d---~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
.....|.||++...+ .....||. +.+|..|+.+|++.+ ..|++|+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 346789999987532 24678875 789999999999987 68999998764
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.85 E-value=7.7e-06 Score=61.04 Aligned_cols=51 Identities=33% Similarity=0.792 Sum_probs=39.9
Q ss_pred CCCCCeeEEeecCCCCC--CcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADS--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~--~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.++...|-||++...++ ....||. +.+|..|+.+|++.+ ..|++|+..+.+
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 45678999999885433 3457865 789999999999765 489999988764
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.72 E-value=2.2e-05 Score=54.60 Aligned_cols=49 Identities=24% Similarity=0.699 Sum_probs=39.6
Q ss_pred CCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 30 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
....|.||++...+.....||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 4568999998876544778876 679999999999765 589999988863
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=8.9e-06 Score=59.65 Aligned_cols=27 Identities=26% Similarity=0.753 Sum_probs=23.7
Q ss_pred ccccHHHHHHHHHHhCCcccccccccccc
Q 026193 57 KYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 57 kyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
+..|..||.+|++.++ .|++|++++..
T Consensus 50 H~FH~~Ci~~Wl~~~~--~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQNN--RCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTCC--BCTTTCCBCCE
T ss_pred CccChHHHHHHHHhCC--CCCCcCCCcch
Confidence 7899999999998764 89999998763
No 12
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.64 E-value=1e-05 Score=54.14 Aligned_cols=48 Identities=31% Similarity=0.689 Sum_probs=36.5
Q ss_pred CCCeeEEeecCCCC--CCcccc-cccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 30 KLVECRICQDEDAD--SNMETP-CSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~~d--~~L~~P-C~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
+...|-||++...+ .....| |. +..|..|+.+|++.+ ..|++|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~~--~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGSH--STCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTTC--CSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHcC--CcCcCCCCEeE
Confidence 45689999988543 234555 54 689999999999764 58999998764
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=1.3e-05 Score=55.39 Aligned_cols=50 Identities=24% Similarity=0.609 Sum_probs=38.7
Q ss_pred CCCCCeeEEeecCCCC----C--CcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 28 PRKLVECRICQDEDAD----S--NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d----~--~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
..+...|-||++...+ . ....||. +.+|..|+.+|++.+ ..|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHHC--SSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHcC--CCCCCCCCccC
Confidence 4567889999987432 1 1567775 789999999999874 58999998875
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=4.2e-05 Score=55.37 Aligned_cols=53 Identities=19% Similarity=0.518 Sum_probs=41.8
Q ss_pred CCCCCeeEEeecCCCCC---CcccccccCCCCccccHHHHHHHHHHh-CCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADS---NMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~---~L~~PC~C~GSlkyvH~~CL~~W~~~k-g~~~CEICk~~y~~ 85 (242)
..+...|-||++...+. +...||. +.+|..|+.+|++.+ +...|++|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 44568899999886431 4567774 789999999999886 46799999998764
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=1.2e-05 Score=56.91 Aligned_cols=52 Identities=21% Similarity=0.460 Sum_probs=41.1
Q ss_pred CCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 026193 27 TPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 86 (242)
Q Consensus 27 s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~~ 86 (242)
...+...|.||++...+ +...||. +.+|..|+.+|+..+ ..|++|+..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVH-PVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSS-EEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCC-CEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHh
Confidence 34567899999987654 5667875 789999999999764 6899999998743
No 16
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=9.1e-05 Score=52.84 Aligned_cols=52 Identities=21% Similarity=0.613 Sum_probs=41.6
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH----hCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE----KGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~----kg~~~CEICk~~y~~ 85 (242)
..+...|.||++...+ +...||. +.+|..|+.+|+.. .+...|++|+..+..
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456899999988654 5566775 67999999999987 357899999998874
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.55 E-value=6.3e-05 Score=53.71 Aligned_cols=52 Identities=19% Similarity=0.514 Sum_probs=41.5
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHh----CCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK----GNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~k----g~~~CEICk~~y~~ 85 (242)
..+...|.||++...+ +...||. +.+|+.|+.+|+..+ +...|++|+..+..
T Consensus 16 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE-PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSS-CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCc-ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456799999887654 5667865 689999999999984 47899999998764
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.54 E-value=3.6e-05 Score=55.02 Aligned_cols=50 Identities=26% Similarity=0.502 Sum_probs=40.9
Q ss_pred CCCCeeEEeecCCCCCCcccc-cccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETP-CSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~P-C~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
.+...|.||++...+ +...| |. +..|+.|+.+|+..++...|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTD-AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTT-CEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhC-CeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 456789999887654 66677 65 7899999999999988789999999753
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=4e-05 Score=53.89 Aligned_cols=52 Identities=19% Similarity=0.445 Sum_probs=41.0
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH-hCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE-KGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~-kg~~~CEICk~~y~~ 85 (242)
..+...|.||++...+ +...||. +.+|..|+.+|++. ++...|++|+..+..
T Consensus 17 ~~~~~~C~IC~~~~~~-~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSS-EEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCC-eEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4567899999987654 5556775 78999999999985 456799999998763
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=2.3e-05 Score=54.89 Aligned_cols=49 Identities=31% Similarity=0.776 Sum_probs=40.3
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..+...|.||++...+ ...||. +.+|..|+.+|+. +...|++|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 3456799999998765 778885 6799999999998 45689999988863
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.48 E-value=7.5e-05 Score=55.16 Aligned_cols=52 Identities=17% Similarity=0.478 Sum_probs=39.5
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.....|-||++....+. .-+ .|. .-+|..||.+|++.++..+|++|+..+..
T Consensus 13 ~~i~~C~IC~~~i~~g~-~C~-~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ-SCE-TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSE-ECS-SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCC-ccC-CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34589999988764322 222 453 67899999999998877899999998863
No 22
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.46 E-value=2e-05 Score=55.04 Aligned_cols=52 Identities=23% Similarity=0.561 Sum_probs=40.2
Q ss_pred CCCCCCeeEEeecCCCC------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 27 TPRKLVECRICQDEDAD------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 27 s~~~~~~CRIC~e~~~d------~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.+.+...|-||++...+ .....||. +..|..|+.+|++.+ ..|++|+..+..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 45667899999987422 12567776 789999999999876 489999998863
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=7.3e-05 Score=51.96 Aligned_cols=51 Identities=16% Similarity=0.376 Sum_probs=39.6
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..+...|.||++...+ +...||. +..|+.|+.+|++ ++...|++|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS-PKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESS-CCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcC-eeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 3456889999887654 4556776 6789999999997 455689999998763
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00012 Score=52.74 Aligned_cols=48 Identities=23% Similarity=0.495 Sum_probs=38.9
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
.....|.||++...+ +...||. +.+|..|+.+|++. ...|++|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN-PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS-EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC-eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 446789999888654 6677876 67899999999976 458999999875
No 25
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.37 E-value=2.3e-05 Score=53.39 Aligned_cols=49 Identities=22% Similarity=0.579 Sum_probs=37.6
Q ss_pred CCCeeEEeecCCCC------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 30 KLVECRICQDEDAD------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 30 ~~~~CRIC~e~~~d------~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
+...|-||++...+ .....||. +..|..|+.+|++.+ ..|++|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHcC--CCCCCCCccCCc
Confidence 45689999987432 12567776 789999999999874 589999998763
No 26
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.33 E-value=9.1e-05 Score=57.72 Aligned_cols=48 Identities=21% Similarity=0.563 Sum_probs=35.8
Q ss_pred CCCeeEEeecCCCCC-----------------CcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 30 KLVECRICQDEDADS-----------------NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~-----------------~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
+...|-||++..++. ....||. +..|..|+.+|+.. ...|++|+.+|.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 346788998764321 1335665 88999999999986 458999999975
No 27
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.31 E-value=0.00014 Score=53.51 Aligned_cols=51 Identities=25% Similarity=0.475 Sum_probs=42.0
Q ss_pred CCCCCeeEEeecCCCCCCcccc-cccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETP-CSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~P-C~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
..+...|-||++...+ +...| |. +..++.||.+|+..++...|++|+..+.
T Consensus 10 ~~~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD-AVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSS-CEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcC-ceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4567899999987654 67778 64 6789999999999888889999999873
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00015 Score=51.32 Aligned_cols=50 Identities=20% Similarity=0.427 Sum_probs=38.6
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.+...|.||++...+.....||. +.+|..|+.+|++. ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHCcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 34578999988766522334876 67899999999976 4689999998864
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.0002 Score=49.12 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=36.4
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHh-CCcccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEIC 79 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~k-g~~~CEIC 79 (242)
..+...|.||++...+ +...||. +.+|+.|+.+|++.+ +...|++|
T Consensus 17 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK-PVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS-CEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC-eEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999987654 5666775 779999999999864 46789988
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.27 E-value=0.00013 Score=52.03 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=40.6
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..+...|.||++...+ +...||. +..++.|+.+|+.. +...|++|+..+..
T Consensus 5 ~~~~~~C~IC~~~~~~-Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD-PVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSS-EEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccC-CEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 4567899999887654 6667765 78999999999974 46789999998763
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00021 Score=47.85 Aligned_cols=46 Identities=17% Similarity=0.624 Sum_probs=36.1
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH-hCCcccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE-KGNTTCEIC 79 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~-kg~~~CEIC 79 (242)
..+...|.||++...+ +...||. +..|+.|+.+|++. ++...|++|
T Consensus 12 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456799999988754 5567875 67999999999875 456789988
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.02 E-value=0.00014 Score=51.71 Aligned_cols=52 Identities=21% Similarity=0.537 Sum_probs=41.2
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHh-----CCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK-----GNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~k-----g~~~CEICk~~y~~ 85 (242)
..+...|.||++...+ +...||. +.+|+.|+.+|+..+ +...|++|+..+..
T Consensus 9 ~~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3457899999988654 5566875 778999999999873 47799999998864
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.92 E-value=0.00017 Score=57.43 Aligned_cols=47 Identities=21% Similarity=0.623 Sum_probs=0.4
Q ss_pred CCeeEEeecCCCCC----------------C-cccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 31 LVECRICQDEDADS----------------N-METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 31 ~~~CRIC~e~~~d~----------------~-L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
...|-||++..++. . +..||. +..|..|+.+|+..+ ..|++|+.+|.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeee
Confidence 36899998774321 1 223555 789999999999885 48999999875
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.87 E-value=0.00031 Score=53.02 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=40.1
Q ss_pred CCCeeEEeecCCCCCCcc-cccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 30 KLVECRICQDEDADSNME-TPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~-~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
+...|-||++...+ +.. .||. +..|..|+.+|+..++ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 45789999988754 555 7876 7899999999999875 689999999853
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.81 E-value=0.00031 Score=48.58 Aligned_cols=49 Identities=18% Similarity=0.438 Sum_probs=36.6
Q ss_pred CCeeEEeec-CCCCCC---cccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 31 LVECRICQD-EDADSN---METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e-~~~d~~---L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
...|-||++ ...+.. +..||. +.+|..|+.+|+.. +...|++|+..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 467999998 322211 457876 67999999999874 45789999998863
No 36
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.75 E-value=0.001 Score=48.83 Aligned_cols=54 Identities=26% Similarity=0.556 Sum_probs=42.5
Q ss_pred CCCCCeeEEeecCCC-CCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~-d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..+...|-||++... +.....||.|. +.+++.|+.+|.+. +...|++|+..|..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 356788999999764 33567888883 67999999998754 56799999999874
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.72 E-value=0.00081 Score=50.67 Aligned_cols=49 Identities=24% Similarity=0.670 Sum_probs=39.1
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHh-CCcccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEK-GNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~k-g~~~CEICk~~y~~ 85 (242)
...|.||++...+ +...||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 21 ~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKE-PVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSS-CCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcC-eEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4689999887654 5667875 788999999999875 45789999998764
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.69 E-value=0.0008 Score=52.25 Aligned_cols=48 Identities=19% Similarity=0.450 Sum_probs=38.5
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
...|-||++...+ +...||. +..|+.|+.+|+. .+...|++|+..+..
T Consensus 52 ~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR-PITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC-cEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 4679999887654 5666875 6799999999998 345689999999864
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.63 E-value=0.0005 Score=51.28 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=37.7
Q ss_pred CCCeeEEeecCCCCCCcc-cccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 30 KLVECRICQDEDADSNME-TPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~-~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
+...|.||++...+ +.. .||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI-AMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC-cCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 34789999988655 443 3776 789999999999854 589999998763
No 40
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.55 E-value=0.00048 Score=54.79 Aligned_cols=45 Identities=24% Similarity=0.724 Sum_probs=36.6
Q ss_pred CeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 32 VECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 32 ~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
..|.||++...+ +...||. +.+|..|+.+|+..+ ..|++|+..+.
T Consensus 54 ~~C~iC~~~~~~-~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCA-----HSFCSYCINEWMKRK--IECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTS-----CEEEHHHHHHHTTTC--SBCTTTCCBCC
T ss_pred CCCcccCcccCC-ceECCCC-----CCccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 479999987654 5677875 789999999999754 57999998875
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.52 E-value=0.00069 Score=55.10 Aligned_cols=47 Identities=26% Similarity=0.550 Sum_probs=37.1
Q ss_pred CCeeEEeecCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 31 LVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~-PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
...|-||++...+ +... ||. +.+|..|+.+|+.. +...|++|+..+.
T Consensus 54 ~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 3589999888654 4443 776 78999999999985 3578999999885
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.51 E-value=0.00034 Score=53.61 Aligned_cols=50 Identities=22% Similarity=0.534 Sum_probs=38.8
Q ss_pred CCCCeeEEeecCCCC------CCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDAD------SNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d------~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.+...|-||++...+ .....||. +..|..|+.+|++.+. .|++|++.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNAN--TCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTCS--BCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhCC--CCCCCCCcCcc
Confidence 356789999987432 12667876 7899999999998654 89999998863
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.48 E-value=0.00051 Score=52.66 Aligned_cols=50 Identities=30% Similarity=0.587 Sum_probs=39.8
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.+...|.||++...+ +...||. +..+..|+.+|+..+ ...|++|+..+..
T Consensus 21 ~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILAD-PVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcC-cEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 345789999887654 5667775 688999999999875 3589999999874
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.27 E-value=0.0017 Score=52.84 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=39.6
Q ss_pred CCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 026193 30 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 86 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~~ 86 (242)
+...|.||++...+ +...||. +.+++.|+.+|+.. +...|++|+..+...
T Consensus 77 ~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ-PVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS-EEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC-CEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 34689999887654 6667876 67899999999985 446899999998753
No 45
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.24 E-value=0.00081 Score=51.01 Aligned_cols=48 Identities=21% Similarity=0.487 Sum_probs=38.3
Q ss_pred CCCeeEEeecCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 30 KLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~~-PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
+...|.||++...+ +... ||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 46789999887654 5554 876 688999999999865 689999998763
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.16 E-value=0.0018 Score=50.00 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=40.4
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..+...|.||++...+ +...||. +..++.|+.+|+..++. .|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcC-eEECCcC-----ChhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 3456789999977654 5666765 78999999999988754 89999998865
No 47
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.88 E-value=0.003 Score=59.43 Aligned_cols=57 Identities=19% Similarity=0.631 Sum_probs=41.8
Q ss_pred CCCCCeeEEeecCCCC-CCc-ccccc---cCCCCccccHHHHHHHHHHhCC---------cccccccccccccc
Q 026193 28 PRKLVECRICQDEDAD-SNM-ETPCS---CCGSLKYAHRRCVQRWCNEKGN---------TTCEICQQQFKPGY 87 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d-~~L-~~PC~---C~GSlkyvH~~CL~~W~~~kg~---------~~CEICk~~y~~~y 87 (242)
.....+|-||++...+ +.+ ...|. |+ +..|..||.+|++..++ -.|+.|+++....|
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 3567899999988544 333 34563 54 78999999999987532 47999999876544
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.83 E-value=0.0036 Score=59.06 Aligned_cols=48 Identities=25% Similarity=0.712 Sum_probs=38.8
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
...|.||++...+ +...||. +..|..|+.+|+.. +...|++|+..+..
T Consensus 332 ~~~C~ICle~~~~-pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD-VKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC-EEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC-eEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 3689999887643 6778987 56799999999985 45689999998864
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.60 E-value=0.00082 Score=51.42 Aligned_cols=50 Identities=18% Similarity=0.526 Sum_probs=39.4
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.+...|.||++...+ +...||. +.++..|+.+|+.. +...|++|+..+..
T Consensus 13 ~~~~~C~iC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE-PVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS-CEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc-eeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 445789999987654 6666875 78999999999964 34789999999863
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.57 E-value=0.0018 Score=49.53 Aligned_cols=50 Identities=22% Similarity=0.572 Sum_probs=37.7
Q ss_pred CCCCeeEEeecCCCC----CC--cccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDAD----SN--METPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d----~~--L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.+...|-||++...+ +. ...||. +..|..|+.+|+..+ ..|++|+..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence 456789999876422 12 445664 789999999999875 489999998864
No 51
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.38 E-value=0.02 Score=48.72 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=39.3
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
.....|-||++--.+ +.+.||. +-.-+.|+.+|+..++.. |++|+.++.
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCC
T ss_pred CcccCCcCcCCHhcC-CeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCc
Confidence 356789999887654 7888974 567799999999886644 999998885
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=94.17 E-value=0.04 Score=40.43 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=39.5
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..+...|-||++--.+ +...||. +-.-+.|+.+|+.. ..+|++|+..+..
T Consensus 11 ~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD-PVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchhcC-CeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 3457899999887654 7888864 56889999999985 4689999988763
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.16 E-value=0.0096 Score=45.78 Aligned_cols=45 Identities=22% Similarity=0.465 Sum_probs=36.6
Q ss_pred CCCeeEEeecCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 30 KLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~~-PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
+...|.||++...+ +... ||. +.+++.|+.+|+. ..|++|+..+.
T Consensus 21 ~~~~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhC-ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 45789999887654 5555 875 7889999999987 68999999874
No 54
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.09 E-value=0.032 Score=41.58 Aligned_cols=51 Identities=16% Similarity=0.369 Sum_probs=39.6
Q ss_pred CCCCCCCeeEEeecCCCCCCcccc-cccCCCCccccHHHHHHHHHHh----CCccccc--cccc
Q 026193 26 STPRKLVECRICQDEDADSNMETP-CSCCGSLKYAHRRCVQRWCNEK----GNTTCEI--CQQQ 82 (242)
Q Consensus 26 ~s~~~~~~CRIC~e~~~d~~L~~P-C~C~GSlkyvH~~CL~~W~~~k----g~~~CEI--Ck~~ 82 (242)
++..+...|-||++-..+ +...| |. +-.-+.|+.+|+... +..+|++ |+..
T Consensus 2 ~~~~~~~~CPI~~~~~~d-PV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 2 SSGSSGFTCPITKEEMKK-PVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSCSSCCBCTTTCSBCSS-EEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCCcEeECcCcCchhcC-CEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 445667889999877654 77775 65 578899999999875 4678999 8866
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=94.00 E-value=0.0079 Score=42.95 Aligned_cols=43 Identities=21% Similarity=0.585 Sum_probs=35.0
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlky-vH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
...|.||++...+ ....||. +. +...|+.+| ..|++|+..+..
T Consensus 24 ~~~C~iC~~~~~~-~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA-IVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC-EEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC-EEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 4789999987643 5667986 66 899999999 689999998863
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.00 E-value=0.0065 Score=48.94 Aligned_cols=49 Identities=14% Similarity=0.358 Sum_probs=38.2
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y 83 (242)
..+...|-||++...+ +...||. +..++.|+.+|++. +...|++|+.+.
T Consensus 28 l~~~~~C~IC~~~~~~-pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR-PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcC-cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 3456799999887654 5667765 67899999999964 456899999864
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=93.76 E-value=0.017 Score=40.20 Aligned_cols=49 Identities=20% Similarity=0.570 Sum_probs=36.4
Q ss_pred CCCCeeEEeecCCCCCC-cccccccCCCCcc-ccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDADSN-METPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~-L~~PC~C~GSlky-vH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
+....|.||++...+.. +..||. +. +=..|+.+|.+.+ ..|++|+..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhh
Confidence 45678999998765422 235987 44 6789999998654 68999999875
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=93.61 E-value=0.02 Score=39.93 Aligned_cols=49 Identities=18% Similarity=0.506 Sum_probs=35.5
Q ss_pred CCCCeeEEeecCCCCCCc-ccccccCCCCcc-ccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDADSNM-ETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L-~~PC~C~GSlky-vH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
++...|.||++...+.-+ ..||. +. +=..|+.+|.+.+ ..|++|+..+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTG-----HLMACFTCAKKLKKRN--KPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEE-----EEEECHHHHHHHHHTT--CCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCC-----ChhhHHHHHHHHHHcC--CcCCCcCcchh
Confidence 356689999988655322 23986 44 3489999999743 58999998875
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=93.55 E-value=0.047 Score=41.55 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=39.8
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..+...|-||++--.+ +...||. +-.-+.|+.+|+.. ..+|++|+..+..
T Consensus 26 ~p~~~~CpI~~~~m~d-PV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD-PVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSS-EEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccC-CeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 4467899999877654 7888864 56889999999984 4689999998763
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=93.41 E-value=0.029 Score=45.49 Aligned_cols=51 Identities=20% Similarity=0.477 Sum_probs=40.0
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
..+...|-||++...+ +...||. +.+.+.|+.+|++.++. .|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~~-pv~~~Cg-----H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALRE-AVQTPCG-----HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcC-cEECCCC-----CHHHHHHHHHHHHhCCC-CCCCCccCcch
Confidence 3456789999987654 5666664 67899999999987653 89999988764
No 61
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.75 E-value=0.021 Score=38.53 Aligned_cols=45 Identities=24% Similarity=0.560 Sum_probs=34.7
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
.+...|.||++...+ +...||. +..+..|+.+| ...|++|++.+.
T Consensus 4 ~~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-PKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC-CSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC-eEEcCCC-----CcccHHHHccC-----CCCCCcCCcEee
Confidence 356789999887654 6778875 56789998773 568999998875
No 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.50 E-value=0.061 Score=47.14 Aligned_cols=49 Identities=20% Similarity=0.589 Sum_probs=37.9
Q ss_pred CCCeeEEeecCCCCCCcccccc-cCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 30 KLVECRICQDEDADSNMETPCS-CCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~~PC~-C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
....|-||.+--..+ .-|. |. ...|..|+.+|++.++...|+.|+..+.
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 478899997764322 2232 53 5899999999999888889999999875
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.35 E-value=0.051 Score=40.05 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=37.4
Q ss_pred CCCeeEEeecCCCCCCcc--cccccCCCCccccHHHHHHHHHHh---C---Cccccc--ccccc
Q 026193 30 KLVECRICQDEDADSNME--TPCSCCGSLKYAHRRCVQRWCNEK---G---NTTCEI--CQQQF 83 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~--~PC~C~GSlkyvH~~CL~~W~~~k---g---~~~CEI--Ck~~y 83 (242)
+...|-||++...+..+. .||. +..-+.|+.+++..+ | ...|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 467899999886544443 3786 689999999999864 3 468999 99874
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.97 E-value=0.07 Score=37.86 Aligned_cols=43 Identities=21% Similarity=0.585 Sum_probs=32.9
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlky-vH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
...|.||++...+ +...||. +. +...|+.+. ..|++|+..+..
T Consensus 25 ~~~C~IC~~~~~~-~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA-IVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC-BCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC-EEEecCC-----CHHHHHHHhhCC------CCCccCCceecC
Confidence 4579999887643 6678986 55 789998542 689999998864
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=91.58 E-value=0.074 Score=45.03 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=40.0
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.+...|-||++--.+ +.+.||. +-.=+.|+.+|+...+. .|++|+.++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 456789999887654 7888874 56789999999988665 79999988763
No 66
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=91.44 E-value=0.11 Score=39.19 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=38.9
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.+...|-||++--.+ +...||. | +-.-+.|+++|+.. ..+|++|+..+..
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-CeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 457899999887654 7778865 1 45779999999986 4589999998863
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.40 E-value=0.19 Score=35.46 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=34.0
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlky-vH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
.+...|.||++...+ ....||. +. +-..|+.+ ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~-~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN-WVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC-CEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC-EEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhc
Confidence 346789999887643 6778997 34 67789873 3689999998864
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=85.02 E-value=0.11 Score=48.02 Aligned_cols=44 Identities=23% Similarity=0.660 Sum_probs=35.4
Q ss_pred CCCeeEEeecCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 026193 30 KLVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~~PC~C~GSlky-vH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
+...|.||++...+ +...||. +. +...|+.+| ..|++|+..+..
T Consensus 294 ~~~~C~IC~~~~~~-~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS-VVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC-EEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc-eEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 45789999987653 6667987 45 889999998 689999998864
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=79.74 E-value=0.32 Score=35.19 Aligned_cols=43 Identities=19% Similarity=0.668 Sum_probs=32.8
Q ss_pred CCeeEEeecCCCCCCcccccccCCCCcc-ccHHHHHHHHHHhCCcccccccccccc
Q 026193 31 LVECRICQDEDADSNMETPCSCCGSLKY-AHRRCVQRWCNEKGNTTCEICQQQFKP 85 (242)
Q Consensus 31 ~~~CRIC~e~~~d~~L~~PC~C~GSlky-vH~~CL~~W~~~kg~~~CEICk~~y~~ 85 (242)
...|.||++...+ ....||. +. +=..|+.+| ..|++|+..+..
T Consensus 18 ~~~C~IC~~~~~~-~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN-STFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC-EEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc-EEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhC
Confidence 4689999887643 5678987 34 557898877 399999998864
No 70
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=79.63 E-value=0.54 Score=33.49 Aligned_cols=52 Identities=17% Similarity=0.350 Sum_probs=36.1
Q ss_pred CCCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccccc
Q 026193 26 STPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQF 83 (242)
Q Consensus 26 ~s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~~y 83 (242)
.++.....|.||.+++ .|+. | .+=-+..|..||.-.+.. ++.+.|..|...-
T Consensus 7 ~~~~~~~~C~vC~~~~---~ll~-C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 7 QNLAPGARCGVCGDGT---DVLR-C--THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTCCCTTTSCCT---TCEE-C--SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred cCCCCCCCcCCCCCCC---eEEE-C--CCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3455667899997543 3332 3 333479999999877765 4789999997653
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=78.89 E-value=0.78 Score=31.74 Aligned_cols=45 Identities=9% Similarity=0.231 Sum_probs=32.4
Q ss_pred CeeEEeecCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 32 VECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 32 ~~CRIC~e~~~d~~L~~-PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
..|.||++--.+ +.+. +|. .-.=+.|+++|+...+ +|+++++++.
T Consensus 4 ~~CpIs~~~m~d-PV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRR-PVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSS-EEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCC
T ss_pred EEecCCCCCCCC-CEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCC
Confidence 457777666543 5555 433 5678999999999765 5999998875
No 72
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=78.76 E-value=0.56 Score=42.22 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=38.8
Q ss_pred CCCCeeEEeecCCCCCCccc-ccccCCCCccccHHHHHHHHHHhCCccccc--ccccccc
Q 026193 29 RKLVECRICQDEDADSNMET-PCSCCGSLKYAHRRCVQRWCNEKGNTTCEI--CQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~-PC~C~GSlkyvH~~CL~~W~~~kg~~~CEI--Ck~~y~~ 85 (242)
.....|-||++-..+ +... .|. +-.=+.|+.+|+..++...|++ |++.+..
T Consensus 179 ~~el~CPIcl~~f~D-PVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEA-PLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSS-EEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccC-CeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 456789999876643 4442 554 5678999999998877889999 9997753
No 73
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=67.94 E-value=0.65 Score=35.40 Aligned_cols=52 Identities=15% Similarity=0.308 Sum_probs=33.2
Q ss_pred CCCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccc
Q 026193 26 STPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQ 80 (242)
Q Consensus 26 ~s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk 80 (242)
++..+...|.+|.+.++.++|+ -| .+=-+..|..||.-+... ++.+.|.-|+
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll-~C--~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQF-FC--TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSE-EC--SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCCCcCCCCCCCCcCCe-EC--CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4456788999998876544454 22 333478999999876543 3455554443
No 74
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.58 E-value=2.9 Score=31.69 Aligned_cols=53 Identities=23% Similarity=0.515 Sum_probs=34.9
Q ss_pred CCCCCCCCeeEEeecCCCCCCccc--ccccCCCCccccHHHHHHHHHH--hCCcccccccccc
Q 026193 25 ISTPRKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQF 83 (242)
Q Consensus 25 ~~s~~~~~~CRIC~e~~~d~~L~~--PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~~y 83 (242)
...+.+...| ||..... +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|...-
T Consensus 30 ~~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcCCCCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3445667888 9987653 34543 33464 2689999987 333 4689999997654
No 75
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=58.73 E-value=1.2 Score=32.13 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=33.5
Q ss_pred CCCCCeeEEeecCC--CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccc
Q 026193 28 PRKLVECRICQDED--ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQ 82 (242)
Q Consensus 28 ~~~~~~CRIC~e~~--~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~ 82 (242)
..+...|.||...+ +++.|+ -|. +=-+.+|..|+.-=..-+|.+.|+.|...
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEE-ECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-ECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 44578899998765 233343 332 22368999998643334578999998653
No 76
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=54.07 E-value=1.3 Score=33.08 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=34.1
Q ss_pred CCCCCeeEEeecCC-CCCCcccccccCCCCccccHHHHHHHHHHhCCcccccccccc
Q 026193 28 PRKLVECRICQDED-ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQF 83 (242)
Q Consensus 28 ~~~~~~CRIC~e~~-~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y 83 (242)
..+...|.||...+ .+.+...-|. +=-..+|..|+.-=..-+|.+.|+.|...-
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence 45668999998765 2222223332 223578999986433345789999997543
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=50.75 E-value=1.1 Score=31.89 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=33.9
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFK 84 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~~y~ 84 (242)
.+...|.||...++...|+. |.+=-.+.|..|+.--... .+.+.|+.|.....
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567888877654334543 2233379999998644332 26789999976553
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=50.71 E-value=23 Score=27.10 Aligned_cols=52 Identities=27% Similarity=0.610 Sum_probs=35.7
Q ss_pred CCCeeEEeecCC---CCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccc
Q 026193 30 KLVECRICQDED---ADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~---~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~ 84 (242)
....|.||-++- .++.+..-|+=-+ --|=+.|++-=.+ .++..|+.||.+|+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~--FPvCrpCyEYErk-eG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG--FPACRPCYEYERR-EGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC--CCCCHHHHHHHHH-TSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC--ChhhHHHHHHHHh-ccCccccccCCccc
Confidence 457999998773 3455555554221 2478899775444 36789999999997
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=49.21 E-value=8.3 Score=29.92 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=38.7
Q ss_pred CCCCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHHhCCccccccccccccccc
Q 026193 25 ISTPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPGYT 88 (242)
Q Consensus 25 ~~s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~~yt 88 (242)
+.+--..-.|+.|+-+.. .|+. |. -+|.=..||..-+..++ .|+||++....+.+
T Consensus 22 d~s~~G~~nCKsCWf~~k--~LV~---C~--dHYLCl~CLtlmL~~Sd--rCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENK--GLVE---CN--NHYLCLNCLTLLLSVSN--RCPICKMPLPTKLR 76 (99)
T ss_dssp SCCCSCCCCCCSSCSCCS--SEEE---CS--SCEEEHHHHHHTCSSSS--EETTTTEECCCCSC
T ss_pred CccccCcccChhhccccC--Ceee---ec--chhhHHHHHHHHHhhcc--CCcccCCcCCccee
Confidence 344445678999987754 3543 32 38999999887776654 89999999876543
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=47.83 E-value=2.9 Score=27.48 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=28.5
Q ss_pred eeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 026193 33 ECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 81 (242)
Q Consensus 33 ~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~ 81 (242)
.|.+|...++++.|+. | .+=-+..|..|+.-=+.+ ++.+.|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~-C--d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL-C--DECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE-C--TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE-C--CCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4778877655444432 2 233478999998532222 46788998864
No 81
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.60 E-value=1.1 Score=30.47 Aligned_cols=50 Identities=20% Similarity=0.424 Sum_probs=29.4
Q ss_pred CCCCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 026193 26 STPRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 81 (242)
Q Consensus 26 ~s~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~ 81 (242)
.+......|.+|...+ .|+. |.+=-+..|..||.-=+.. ++.+.|..|..
T Consensus 4 g~~~~~~~C~vC~~~g---~ll~---Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 4 GSSGHEDFCSVCRKSG---QLLM---CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCCSSCCSCSSSCCSS---CCEE---CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CcCCCCCCCccCCCCC---eEEE---cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3455678899997653 2322 2233477888887633222 35677777753
No 82
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=44.21 E-value=4.3 Score=29.08 Aligned_cols=51 Identities=24% Similarity=0.559 Sum_probs=33.4
Q ss_pred CCCCCCeeEEeecCCCCCCccc--ccccCCCCccccHHHHHHHHHH--hCCcccccccccc
Q 026193 27 TPRKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQF 83 (242)
Q Consensus 27 s~~~~~~CRIC~e~~~d~~L~~--PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~~y 83 (242)
.+.+...| ||..... +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|...-
T Consensus 12 d~~~~~~C-~C~~~~~-g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSC-SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCC-CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCccc
Confidence 35567888 8977643 45543 22353 2689999987 433 4789999997543
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=43.71 E-value=4.2 Score=28.07 Aligned_cols=49 Identities=18% Similarity=0.468 Sum_probs=32.4
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQ 82 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~~ 82 (242)
......|.+|...+ .|+. |.+=-+..|..||.-=+.+ ++.+.|+.|..+
T Consensus 8 ~~~~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 44567899997642 3322 2233478999998764432 578999999753
No 84
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=41.28 E-value=38 Score=22.51 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=16.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhc
Q 026193 184 FLRTAGIVLPIYVMVKAVTALQRHRYQQV 212 (242)
Q Consensus 184 ~Lr~aGillP~Yi~~~ai~~~q~~r~~~~ 212 (242)
..-+.| +|-+.+++-.+..+-|||++++
T Consensus 15 a~~vVG-vll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 15 ISAVVG-ILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHH-HHHHHHHHHHHHhheehhhhhc
Confidence 344556 3335556666667777776653
No 85
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=39.48 E-value=8.5 Score=27.06 Aligned_cols=36 Identities=36% Similarity=0.737 Sum_probs=20.9
Q ss_pred CCCCCCCeeEEeecCCCCCCccccc--ccCCCCccccHHHH
Q 026193 26 STPRKLVECRICQDEDADSNMETPC--SCCGSLKYAHRRCV 64 (242)
Q Consensus 26 ~s~~~~~~CRIC~e~~~d~~L~~PC--~C~GSlkyvH~~CL 64 (242)
+++.....|-+|.....++..---| .|+ ++.|..|+
T Consensus 3 ~~~~~~~~C~~C~~p~~~~~~mI~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 3 SSSDPVYPCGICTNEVNDDQDAILCEASCQ---KWFHRICT 40 (65)
T ss_dssp ------CBCTTTCSBCCTTSCEEEBTTTTC---CEEEHHHH
T ss_pred CCCCCcCcCccCCCccCCCCCeEecccCcc---ccCchhcc
Confidence 3455667899998875443333344 354 79999997
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=34.74 E-value=2.4 Score=35.69 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccccc
Q 026193 30 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~~y~ 84 (242)
....|.+|..+++ ++ - |.|--+..|..|+.-.+.. +|.+.|..|...-+
T Consensus 6 ~~~~C~~C~~~g~---ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGGD---LL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCEE---EE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCc---eE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 4567999976542 32 2 4444588999998665543 57899999987654
No 87
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=34.46 E-value=4.9 Score=32.48 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=33.6
Q ss_pred CCCCCeeEEeecCCC-CCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccc
Q 026193 28 PRKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQF 83 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~-d~~L~~PC~C~GSlkyvH~~CL~~W~~~---kg~~~CEICk~~y 83 (242)
..+...| +|....+ ++.|+.=-.| -.+.|..|+.---.. .+.+.|+.|...-
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 4567788 9987643 4456543345 389999998533222 4689999998653
No 88
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=33.82 E-value=20 Score=23.82 Aligned_cols=18 Identities=17% Similarity=0.637 Sum_probs=13.2
Q ss_pred CcccccccccccccccCC
Q 026193 73 NTTCEICQQQFKPGYTAP 90 (242)
Q Consensus 73 ~~~CEICk~~y~~~yt~p 90 (242)
...|.+|++.|.+..-.|
T Consensus 4 ~y~C~vCGyvyd~~~Gd~ 21 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDN 21 (46)
T ss_dssp CEEETTTCCEECGGGGTT
T ss_pred EEECCCCCeEEeCCcCCC
Confidence 468999999998654444
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=33.34 E-value=19 Score=29.20 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=32.8
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHH---------HhCCccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN---------EKGNTTCEICQ 80 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~---------~kg~~~CEICk 80 (242)
.+....|++|.++++ |+ - |.+=.+-.|..||..=+. ..+.+.|..|.
T Consensus 60 Dg~~d~C~vC~~GG~---Ll-c--CD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGN---LI-C--CDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSS---EE-E--CSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCc---EE-e--CCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 345689999987653 22 1 122247899999997652 36899999995
No 90
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=30.93 E-value=2.7 Score=28.97 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=33.4
Q ss_pred CCCCCeeEEeecCCC--CCCcccccccCCCCccccHHHHHHHHH-----HhCCccccccccc
Q 026193 28 PRKLVECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWCN-----EKGNTTCEICQQQ 82 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~--d~~L~~PC~C~GSlkyvH~~CL~~W~~-----~kg~~~CEICk~~ 82 (242)
+++...|.+|..... ++.|+. | .+=-+.+|..|+.-=+. .++.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~-C--d~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVI-C--DKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEE-C--SSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE-C--CCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456789999987642 234332 2 23336789999874332 3578999998654
No 91
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=29.80 E-value=28 Score=27.87 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=32.3
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHH------H---HhCCccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWC------N---EKGNTTCEICQ 80 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~------~---~kg~~~CEICk 80 (242)
++....|++|.++++ |+ -|.+--+-.|.+||.+=+ + .++.+.|-.|.
T Consensus 54 Dg~~~~C~vC~dGG~---Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN---LI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TSCBSSCTTTCCCSE---EE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCcCeecCCCCe---eE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 445677999976643 22 123445899999999742 2 36789999994
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=28.39 E-value=19 Score=27.29 Aligned_cols=34 Identities=15% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCCeeEEeecCCCC------CCcccccccCCCCccccHHHHHH
Q 026193 30 KLVECRICQDEDAD------SNMETPCSCCGSLKYAHRRCVQR 66 (242)
Q Consensus 30 ~~~~CRIC~e~~~d------~~L~~PC~C~GSlkyvH~~CL~~ 66 (242)
....|.+|+..++. +.|+. |.+=-+..|..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~---C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELIS---CADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEE---CTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceE---hhhcCCCCCCchhcC
Confidence 35679999876422 24442 333347899999964
No 93
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=27.10 E-value=46 Score=22.45 Aligned_cols=16 Identities=19% Similarity=0.642 Sum_probs=12.4
Q ss_pred Cccccccccccccccc
Q 026193 73 NTTCEICQQQFKPGYT 88 (242)
Q Consensus 73 ~~~CEICk~~y~~~yt 88 (242)
...|.+|++.|.+.--
T Consensus 3 ~y~C~~CGyvYd~~~G 18 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKG 18 (52)
T ss_dssp CEECSSSCCCCCTTTC
T ss_pred cEEeCCCCeEEcCCcC
Confidence 4689999999986543
No 94
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=26.76 E-value=5.2 Score=32.82 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=32.9
Q ss_pred CCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccccc
Q 026193 30 KLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~~y~ 84 (242)
+...|.+|..+++ ++ - |.+--+..|..|+.--+.. +|.+.|..|...=.
T Consensus 3 ~~~~C~~C~~~g~---ll-~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGE---LL-C--CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSS---CE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCe---ee-e--cCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 3467999976542 32 2 3344578999998655543 57899999986543
No 95
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.43 E-value=2.5 Score=31.38 Aligned_cols=52 Identities=17% Similarity=0.392 Sum_probs=35.4
Q ss_pred CCCeeEEeecCCC--CCCcccccccCCCCccccHHHHHHHHH------HhCCccccccccccc
Q 026193 30 KLVECRICQDEDA--DSNMETPCSCCGSLKYAHRRCVQRWCN------EKGNTTCEICQQQFK 84 (242)
Q Consensus 30 ~~~~CRIC~e~~~--d~~L~~PC~C~GSlkyvH~~CL~~W~~------~kg~~~CEICk~~y~ 84 (242)
....|.+|...+. ++.|+.==.| -+..|..|+.-=+. -++.+.|..|....+
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C---~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQEC---HNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSS---CCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCC---CCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3568999987754 2444432233 36889999875543 357899999987765
No 96
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.20 E-value=51 Score=23.37 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=34.0
Q ss_pred CCCCeeEEeecCCC-CCCcccccccCCCCccccHHHHHHHHHH---hCCcccccccccccc
Q 026193 29 RKLVECRICQDEDA-DSNMETPCSCCGSLKYAHRRCVQRWCNE---KGNTTCEICQQQFKP 85 (242)
Q Consensus 29 ~~~~~CRIC~e~~~-d~~L~~PC~C~GSlkyvH~~CL~~W~~~---kg~~~CEICk~~y~~ 85 (242)
.+...| ||....+ ++.|+.==.|. .+.|..|+.-=-.. .....|+.|.....+
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 345677 8877653 44565433453 79999998643332 257899999876543
No 97
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.86 E-value=9.7 Score=28.60 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHH-HhCCcccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN-EKGNTTCEICQQ 81 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~-~kg~~~CEICk~ 81 (242)
..+...| ||....+++.|+.==.| -.+.|..|+.-=.. ..+.+.|+.|+.
T Consensus 25 ~~d~vrC-iC~~~~~~~~mi~Cd~C---~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 25 GTDVTRC-ICGFTHDDGYMICCDKC---SVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCCBCCC-TTSCCSCSSCEEEBTTT---CBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCCEEe-ECCCccCCCcEEEcCCC---CCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3445678 88766656666543334 47999999753111 124689999963
No 98
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.11 E-value=24 Score=17.89 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=9.4
Q ss_pred cccccccccccc
Q 026193 74 TTCEICQQQFKP 85 (242)
Q Consensus 74 ~~CEICk~~y~~ 85 (242)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999988863
No 99
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.97 E-value=80 Score=22.52 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.4
Q ss_pred Ccccccccccccccc
Q 026193 73 NTTCEICQQQFKPGY 87 (242)
Q Consensus 73 ~~~CEICk~~y~~~y 87 (242)
...|.+|++.|.+.-
T Consensus 7 ~y~C~vCGyiYd~~~ 21 (70)
T 1dx8_A 7 KYECEACGYIYEPEK 21 (70)
T ss_dssp CEEETTTCCEECTTT
T ss_pred eEEeCCCCEEEcCCC
Confidence 578999999998654
No 100
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=23.45 E-value=2.8 Score=29.00 Aligned_cols=48 Identities=25% Similarity=0.601 Sum_probs=30.0
Q ss_pred CCCCCeeEEeecCCCCCCccc--ccccCCCCccccHHHHHHHHHH--hCCcccccccc
Q 026193 28 PRKLVECRICQDEDADSNMET--PCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQ 81 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~--PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~ 81 (242)
+.+...| ||...+. +.|+. -|.|. ..+.|..|+. +.. ++.+.|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~-g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-SEEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-CCEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 4566778 8877643 44543 23353 2689999987 443 37888888864
No 101
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.13 E-value=27 Score=17.89 Aligned_cols=12 Identities=33% Similarity=0.957 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 026193 74 TTCEICQQQFKP 85 (242)
Q Consensus 74 ~~CEICk~~y~~ 85 (242)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 479999998863
No 102
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.58 E-value=40 Score=23.11 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=12.5
Q ss_pred Cccccccccccccccc
Q 026193 73 NTTCEICQQQFKPGYT 88 (242)
Q Consensus 73 ~~~CEICk~~y~~~yt 88 (242)
...|.+|++.|.+..-
T Consensus 3 ~y~C~vCGyvYd~~~G 18 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDG 18 (54)
T ss_dssp CEEETTTCCEECTTTC
T ss_pred ceECCCCCeEECCCcC
Confidence 4689999999986543
No 103
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.47 E-value=23 Score=25.31 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=23.3
Q ss_pred CcccccccCCCCccccHHHHHHHHHHhCCccccccccccccc
Q 026193 45 NMETPCSCCGSLKYAHRRCVQRWCNEKGNTTCEICQQQFKPG 86 (242)
Q Consensus 45 ~L~~PC~C~GSlkyvH~~CL~~W~~~kg~~~CEICk~~y~~~ 86 (242)
.|..| .|+|.+.|.- .+|...|+-|+..|.+.
T Consensus 10 iL~CP-~ck~~L~~~~---------~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 10 VLACP-KDKGPLRYLE---------SEQLLVNERLNLAYRID 41 (67)
T ss_dssp CCBCT-TTCCBCEEET---------TTTEEEETTTTEEEEEE
T ss_pred HhCCC-CCCCcCeEeC---------CCCEEEcCCCCccccCC
Confidence 45667 7888887642 35778899999988753
No 104
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.04 E-value=20 Score=18.33 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 026193 74 TTCEICQQQFKP 85 (242)
Q Consensus 74 ~~CEICk~~y~~ 85 (242)
..|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 479999998863
No 105
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.33 E-value=4.2 Score=30.44 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=31.5
Q ss_pred CCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHH--HhCCccccccccc
Q 026193 29 RKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCN--EKGNTTCEICQQQ 82 (242)
Q Consensus 29 ~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~--~kg~~~CEICk~~ 82 (242)
.+...|.||...++++.|+ -|. +=-+..|..||.-=+. -++.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll-~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLL-FCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCE-ECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEE-EcC--CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4456799998776433333 222 2236899999852222 2478899999754
No 106
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.20 E-value=26 Score=17.99 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=9.6
Q ss_pred cccccccccccc
Q 026193 74 TTCEICQQQFKP 85 (242)
Q Consensus 74 ~~CEICk~~y~~ 85 (242)
..|+.|+..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 579999998863
No 107
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=20.92 E-value=1.3e+02 Score=19.38 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCCchHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 026193 173 NDYSFPIFLQLFLRTAGIVLPIYVMVKAVTALQ 205 (242)
Q Consensus 173 ~~~s~~lf~l~~Lr~aGillP~Yi~~~ai~~~q 205 (242)
++|+-+.+-..+-=..|.++|...|+-..-.+|
T Consensus 3 g~~aa~~LPsI~VPlVglvfPai~Mallf~yIe 35 (38)
T 1jb0_I 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLYIE 35 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred chhhhhhCChhhHhHHHHHHHHHHHHHHHHhhc
Confidence 455544444556667899999988887765554
No 108
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.86 E-value=29 Score=17.70 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=8.9
Q ss_pred ccccccccccc
Q 026193 74 TTCEICQQQFK 84 (242)
Q Consensus 74 ~~CEICk~~y~ 84 (242)
..|+.|+..|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 47999998886
No 109
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=20.03 E-value=6.2 Score=27.48 Aligned_cols=49 Identities=27% Similarity=0.545 Sum_probs=31.0
Q ss_pred CCCCCeeEEeecCCCCCCcccccccCCCCccccHHHHHHHHHH--hCCccccccccc
Q 026193 28 PRKLVECRICQDEDADSNMETPCSCCGSLKYAHRRCVQRWCNE--KGNTTCEICQQQ 82 (242)
Q Consensus 28 ~~~~~~CRIC~e~~~d~~L~~PC~C~GSlkyvH~~CL~~W~~~--kg~~~CEICk~~ 82 (242)
+.....|.+|...+ .|+ - |.+=-+..|..||.--+.. ++.+.|+.|...
T Consensus 5 ~~~~~~C~vC~~~g---~ll-~--CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDGG---ELI-C--CDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCCS---SCE-E--CSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCCC---CEE-E--cCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45677899998653 232 1 2233468899997643322 478889988643
Done!