Query 026194
Match_columns 242
No_of_seqs 147 out of 430
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 4.2E-40 9.2E-45 281.1 19.5 161 71-232 1-198 (198)
2 PF08212 Lipocalin_2: Lipocali 61.9 80 0.0017 25.2 8.8 102 117-235 3-114 (143)
3 PF14869 DUF4488: Domain of un 58.3 1E+02 0.0022 25.3 9.5 66 119-190 2-71 (133)
4 PF12283 Protein_K: Bacterioph 46.2 37 0.0008 23.3 3.6 37 69-108 4-41 (56)
5 PF05973 Gp49: Phage derived p 45.3 73 0.0016 23.4 5.6 43 90-132 6-50 (91)
6 PF06251 Caps_synth_GfcC: Caps 43.7 22 0.00048 31.1 2.9 74 58-133 43-129 (229)
7 TIGR02116 toxin_Txe_YoeB toxin 39.0 39 0.00084 24.5 3.2 31 92-123 17-47 (80)
8 PF14834 GST_C_4: Glutathione 35.1 48 0.001 26.6 3.3 38 85-126 35-72 (117)
9 PHA00097 K protein K 34.6 66 0.0014 22.0 3.4 37 69-108 4-41 (56)
10 PF07624 PSD2: Protein of unkn 29.5 78 0.0017 22.9 3.4 26 85-110 35-60 (76)
11 COG3040 Blc Bacterial lipocali 26.3 4.2E+02 0.0091 22.8 8.4 75 148-235 59-142 (174)
12 smart00550 Zalpha Z-DNA-bindin 25.3 1.2E+02 0.0026 21.4 3.7 55 70-127 4-65 (68)
13 PLN02845 Branched-chain-amino- 25.1 83 0.0018 29.2 3.6 31 205-235 201-231 (336)
14 PF03076 GP3: Equine arteritis 24.8 58 0.0013 26.5 2.1 18 204-221 121-138 (160)
15 PF12644 DUF3782: Protein of u 23.0 1.9E+02 0.004 19.8 4.3 36 69-110 9-44 (64)
16 PRK05244 Der GTPase activator; 22.7 98 0.0021 26.6 3.3 34 75-108 107-140 (177)
17 PF11668 Gp_UL130: HCMV glycop 21.6 63 0.0014 27.1 1.8 82 11-96 1-88 (156)
18 COG2088 SpoVG Uncharacterized 21.5 84 0.0018 24.1 2.3 18 213-231 29-46 (95)
19 TIGR00053 addiction module tox 21.1 88 0.0019 22.8 2.4 31 94-124 24-54 (89)
20 PRK07546 hypothetical protein; 20.8 1E+02 0.0022 26.3 3.1 29 205-233 122-150 (209)
21 KOG1513 Nuclear helicase MOP-3 20.6 98 0.0021 33.1 3.3 34 69-107 775-808 (1300)
22 COG3880 Modulator of heat shoc 20.2 1.5E+02 0.0033 25.4 3.8 40 68-113 136-175 (176)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=4.2e-40 Score=281.11 Aligned_cols=161 Identities=40% Similarity=0.703 Sum_probs=137.4
Q ss_pred HHHHHHHHHHhccCCCCCCCCHhHHHHHHHHHHHHHhcCCCCCCCcc-CCcceEEEEEEEcccccccc---cCCcccccC
Q 026194 71 ESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKEPLKS-NLLNGKWELLYTTSQSLLQT---KRPKFLRPN 146 (242)
Q Consensus 71 ~~lK~~LL~~ia~t~rG~~as~~~r~~I~~lI~~LEa~np~~~P~~s-~lL~G~W~LvyTS~~~~l~~---~~p~f~~~~ 146 (242)
+++|++||+++++++||+.++++++++|+++|++||++||+++|+++ ++|+|+|+|+|||+.+.... ..+. +..+
T Consensus 1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~-~~~~ 79 (198)
T PF04755_consen 1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLP-GVRV 79 (198)
T ss_pred ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccc-cccc
Confidence 37999999999999999999999999999999999999999999988 99999999999999876643 2222 3468
Q ss_pred CceEEEEecCCceeeeeeec---Ccc-c--ceeeeeeecCCceEEEEEeeeEEec------------------------c
Q 026194 147 GKIYQAINIDTLRAQNIETW---PFF-N--QATANLVPLNSKRVAVKFDYFRIAG------------------------L 196 (242)
Q Consensus 147 G~v~Q~Id~~~~~~~N~v~~---p~~-~--~v~a~~~~~~~~rv~V~F~~~~v~G------------------------~ 196 (242)
|++||+||.+++++.|+|+| |.. + .+.+.+++.+++|+.|+|+++.+.. .
T Consensus 80 ~~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~~ 159 (198)
T PF04755_consen 80 GRVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISDE 159 (198)
T ss_pred cceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccccc
Confidence 99999999999999999995 422 2 5789999999999999999986611 1
Q ss_pred ccCC--CC-CCCcceEEEEEecCCeeEEeCCCCcEEEEE
Q 026194 197 IPIK--SP-GSGRGQLEITYLDEELRISRGNRGNLFILK 232 (242)
Q Consensus 197 ~p~~--~p-~~~~G~ld~tYLDddlRIsRG~~G~lFVl~ 232 (242)
.|++ ++ ..++||||||||||||||+||++|++|||+
T Consensus 160 ~~~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 160 LPVPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK 198 (198)
T ss_pred cccccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence 2222 23 367999999999999999999999999984
No 2
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=61.88 E-value=80 Score=25.24 Aligned_cols=102 Identities=16% Similarity=0.197 Sum_probs=51.9
Q ss_pred cCCcceEEEEEEEcccccccccCCcccccCC-ceEEEEecCCceeeeeeecCccc---ceeeeeeecC---CceEEEEEe
Q 026194 117 SNLLNGKWELLYTTSQSLLQTKRPKFLRPNG-KIYQAINIDTLRAQNIETWPFFN---QATANLVPLN---SKRVAVKFD 189 (242)
Q Consensus 117 s~lL~G~W~LvyTS~~~~l~~~~p~f~~~~G-~v~Q~Id~~~~~~~N~v~~p~~~---~v~a~~~~~~---~~rv~V~F~ 189 (242)
.+...|+|--+... +..++.. . ... ..|..-+...-.+.|.-.- .-| .+.+...+.+ +.++.|+|.
T Consensus 3 l~rY~G~WYEiar~-p~~~q~~----~-~~~~a~Yt~~~dg~i~V~n~~~~-~~g~~~~~~g~a~~~~~~~~~~l~V~f~ 75 (143)
T PF08212_consen 3 LDRYMGTWYEIARY-PNFFQRG----C-VCVTAEYTLRDDGTISVRNSCRR-PDGKIKTIRGTATVVDPSGPAKLKVRFP 75 (143)
T ss_dssp CCCC-EEEEEEEEE---CCCTT------ECEEEEEEE-TTS-EEEEEEEEE-TTTCCCEEEEEEEESSBTTSSEEEEESS
T ss_pred hHHcCEeeeEEEEE-CCcccce----e-eeeeeeEEEcCCCEEEEEEEEEc-CCCCEEEEEeEEEEcCCCCccEEEEEEe
Confidence 45678999888664 2222210 0 011 2233322223345554321 112 3344433322 456777665
Q ss_pred eeEEeccccCCCCCCCcceEEEEEecCC---eeEEeCCCCcEEEEEeCC
Q 026194 190 YFRIAGLIPIKSPGSGRGQLEITYLDEE---LRISRGNRGNLFILKMVD 235 (242)
Q Consensus 190 ~~~v~G~~p~~~p~~~~G~ld~tYLDdd---lRIsRG~~G~lFVl~R~~ 235 (242)
.. |. ...|-..++|+|.+ .=|+-.++..+|||.|..
T Consensus 76 ~~------~~----~~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p 114 (143)
T PF08212_consen 76 GI------PF----PPKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTP 114 (143)
T ss_dssp T-------------TEEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSS
T ss_pred cc------cc----CCCcceEEEEEcCCccEEEEecCCCCEEEEEeCCC
Confidence 41 11 23577789999988 456666888999999974
No 3
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=58.34 E-value=1e+02 Score=25.29 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=39.7
Q ss_pred CcceEEEEE-EEcccccccccCCcccccCCceEEEEecCCceeeeeeecCcccc---eeeeeeecCCceEEEEEee
Q 026194 119 LLNGKWELL-YTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQ---ATANLVPLNSKRVAVKFDY 190 (242)
Q Consensus 119 lL~G~W~Lv-yTS~~~~l~~~~p~f~~~~G~v~Q~Id~~~~~~~N~v~~p~~~~---v~a~~~~~~~~rv~V~F~~ 190 (242)
.|.|-|+|. |-+...-..... ..+.++-+| .+++++.|+.-.|..+. ..++++..++....-..+.
T Consensus 2 ~l~GVWQ~c~~~~~~~~~~g~l-----~~~~~lKil-S~Dgtf~Ni~~~~~~~aiIt~~GtY~~~sD~~Y~E~IeK 71 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPEVPGKL-----KPSNVLKIL-SDDGTFVNITMIPKSGAIITGYGTYEQPSDNIYVESIEK 71 (133)
T ss_pred CceEEEEEEEEeecCcccCceE-----eecccEEEE-cCCCcEEEEEEeCCCCcEEEEeEEEEEcCCccceeeecc
Confidence 378999999 555442222111 134567777 57799999987765553 2456666666544444444
No 4
>PF12283 Protein_K: Bacteriophage protein K; InterPro: IPR020962 This family of proteins is found in the microviridae (isometric ssDNA phages) and are approximately 60 amino acids in length. The function of these proteins are unknown. In phi X174 site-directed mutagenesis of gene K produces small plaques on su- hosts. The mutant phage has an identical latent period, but a more reduced burst size than that of the wild-type phi X174. The reduced burst size in the gene K mutant suggests that the gene K protein, although not essential, has a role in increasing infectivity by increasing the burst size three to six fold [].
Probab=46.18 E-value=37 Score=23.33 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhccCCC-CCCCCHhHHHHHHHHHHHHHhc
Q 026194 69 RVESFKEELFQAIKPLDR-GAEASPEDQARVDQIARKLEAV 108 (242)
Q Consensus 69 ~~~~lK~~LL~~ia~t~r-G~~as~~~r~~I~~lI~~LEa~ 108 (242)
+..-+||+||-+....+| |.-+ ..++|.....+||.+
T Consensus 4 k~tli~qellll~yelnrsgllv---ene~i~~~l~~le~l 41 (56)
T PF12283_consen 4 KTTLIKQELLLLTYELNRSGLLV---ENEEIQSQLKQLEKL 41 (56)
T ss_pred hHHHHHHHHHHHHHHhccccccc---ccHHHHHHHHHHHHH
Confidence 456789999999999998 6654 335688888888876
No 5
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=45.27 E-value=73 Score=23.37 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=30.2
Q ss_pred CCHhHHHHHHHHHHHHHhcCCCCCCCccCCc--ceEEEEEEEccc
Q 026194 90 ASPEDQARVDQIARKLEAVNDIKEPLKSNLL--NGKWELLYTTSQ 132 (242)
Q Consensus 90 as~~~r~~I~~lI~~LEa~np~~~P~~s~lL--~G~W~LvyTS~~ 132 (242)
.++..+++|...++.|+..++...+.....| +|-|||......
T Consensus 6 L~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 6 LPDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CCHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 3567789999999999888754322222333 699999887655
No 6
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=43.67 E-value=22 Score=31.10 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=41.5
Q ss_pred ceeeecccchhhHHHHHHHHHHHhccCCCCCCCCHhHHHHHHHHHHHHHhcCCCC------C-------CCccCCcceEE
Q 026194 58 RVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIK------E-------PLKSNLLNGKW 124 (242)
Q Consensus 58 ~~s~~~~~~~~~~~~lK~~LL~~ia~t~rG~~as~~~r~~I~~lI~~LEa~np~~------~-------P~~s~lL~G~W 124 (242)
+...|.-....+.++.|++|+..++.... ....+..+....++++|+....+. + +...++|.|.+
T Consensus 43 ~a~L~~~~~~~~~~~~~~~ll~~L~~l~~--~~~~~~~~~~~~l~~qL~~~~~~gR~~i~lD~d~~r~~~~~n~~L~ggd 120 (229)
T PF06251_consen 43 GAALFRRSKQAEAEQQKQQLLAQLAQLEQ--SADSDQAAAAQQLIQQLQSLEATGRVVINLDPDWVRLNPEYNPLLEGGD 120 (229)
T ss_dssp G-EEE-HHHHHHHHHHHHHHHHHHHHHHH--HS-HHHHHHHHHHHHHHTT--B----S----TTS-EESTTSS-B-ECEE
T ss_pred cceeecccchHHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHhccccceEEEecCHHHhhccccCCCcCCCCc
Confidence 44455433344678888888887776443 345567788899999998876531 1 12356899999
Q ss_pred EEEEEcccc
Q 026194 125 ELLYTTSQS 133 (242)
Q Consensus 125 ~LvyTS~~~ 133 (242)
.|..-..++
T Consensus 121 ~L~vP~rp~ 129 (229)
T PF06251_consen 121 RLYVPPRPN 129 (229)
T ss_dssp EEE-----S
T ss_pred EEEECCCCC
Confidence 999988775
No 7
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=39.05 E-value=39 Score=24.47 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHhcCCCCCCCccCCcceE
Q 026194 92 PEDQARVDQIARKLEAVNDIKEPLKSNLLNGK 123 (242)
Q Consensus 92 ~~~r~~I~~lI~~LEa~np~~~P~~s~lL~G~ 123 (242)
++.++.|.++|++|+ .||.+.......|.|.
T Consensus 17 ~~~~~~i~~~i~~l~-~~P~~~~~~~~~L~G~ 47 (80)
T TIGR02116 17 KKLKKKINELIKDVR-RDPFKGKGKPEPLKGD 47 (80)
T ss_pred HHHHHHHHHHHHHHH-cCCCCCCCCcccCCCC
Confidence 456788999998887 4565322223335554
No 8
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=35.09 E-value=48 Score=26.64 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCCCCCHhHHHHHHHHHHHHHhcCCCCCCCccCCcceEEEE
Q 026194 85 DRGAEASPEDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (242)
Q Consensus 85 ~rG~~as~~~r~~I~~lI~~LEa~np~~~P~~s~lL~G~W~L 126 (242)
.+....+++-+++++.|+...|.+-+... +-|.|+|-.
T Consensus 35 ~~~~pLs~~a~~~a~kL~~~a~~ll~~g~----~~LFGewsI 72 (117)
T PF14834_consen 35 ARKPPLSEAAQAAAQKLIAVAERLLADGG----PNLFGEWSI 72 (117)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTT------SSTTSS--H
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhccCC----CCccccchH
Confidence 34566899999999999999999876433 459999965
No 9
>PHA00097 K protein K
Probab=34.57 E-value=66 Score=22.05 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhccCCC-CCCCCHhHHHHHHHHHHHHHhc
Q 026194 69 RVESFKEELFQAIKPLDR-GAEASPEDQARVDQIARKLEAV 108 (242)
Q Consensus 69 ~~~~lK~~LL~~ia~t~r-G~~as~~~r~~I~~lI~~LEa~ 108 (242)
+..-++|+||-+....+| |.-+ +.++|.....+||.+
T Consensus 4 kttli~qelllltyelnrsgllv---eneeiqs~lk~le~l 41 (56)
T PHA00097 4 KTTLILQELLLLTYELNRSGLLV---ENEEIQSQLKKLEKL 41 (56)
T ss_pred hhHHHHHHHHHHHHhhcccccee---ccHHHHHHHHHHHHH
Confidence 355689999999999998 6654 335678888888876
No 10
>PF07624 PSD2: Protein of unknown function (DUF1585); InterPro: IPR011478 This entry represents a conserved region at the C terminus of a family of cytochrome-like proteins found in bacteria such as Rhodopirellula baltica and Solibacter usitatus. These proteins also contain IPR013036 from INTERPRO, IPR013039 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=29.49 E-value=78 Score=22.89 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.3
Q ss_pred CCCCCCCHhHHHHHHHHHHHHHhcCC
Q 026194 85 DRGAEASPEDQARVDQIARKLEAVND 110 (242)
Q Consensus 85 ~rG~~as~~~r~~I~~lI~~LEa~np 110 (242)
.-|...+..|+..|+++++++++.+-
T Consensus 35 AlGR~~~~~D~~~i~~i~~~~~~~~y 60 (76)
T PF07624_consen 35 ALGRPLEFSDRCEIDRIVEAFKANGY 60 (76)
T ss_pred HcCCCCCcchHHHHHHHHHHHHHcCC
Confidence 33555667899999999999998653
No 11
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=26.30 E-value=4.2e+02 Score=22.75 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=45.3
Q ss_pred ceEEEEecCCceeeeeeecCccc---ceeeeeeecC---CceEEEEEeeeEEeccccCCCCCCCcceEEEEEecCCeeEE
Q 026194 148 KIYQAINIDTLRAQNIETWPFFN---QATANLVPLN---SKRVAVKFDYFRIAGLIPIKSPGSGRGQLEITYLDEELRIS 221 (242)
Q Consensus 148 ~v~Q~Id~~~~~~~N~v~~p~~~---~v~a~~~~~~---~~rv~V~F~~~~v~G~~p~~~p~~~~G~ld~tYLDddlRIs 221 (242)
..|-..|...-.++|.-..+.-+ .+.+.-.+.+ ..++.|+|-. |+ . |-..++|+|+|-+..
T Consensus 59 A~Y~l~d~~~I~V~n~c~~~~~~~~~~ieGkA~i~~~~~~a~LkVsF~~-------pF----~--g~Y~Vl~~d~eYs~a 125 (174)
T COG3040 59 ATYSLRDDGGISVINRCRTGDGGKWSQIEGKAKIVDNATRAKLKVSFFG-------PF----Y--GDYWVLALDPEYSWA 125 (174)
T ss_pred eEEEEecCCceEEEeccccCCCCCceeecceEEEecCccccEEEEEecC-------Cc----c--ccEEEEEECCCccEE
Confidence 45666776666777764332221 2333333322 2445555533 33 2 677899999998754
Q ss_pred e---CCCCcEEEEEeCC
Q 026194 222 R---GNRGNLFILKMVD 235 (242)
Q Consensus 222 R---G~~G~lFVl~R~~ 235 (242)
- .|+-.+|+|.|..
T Consensus 126 iVgsPdr~ylWlLsRtP 142 (174)
T COG3040 126 IVGSPDREYLWLLSRTP 142 (174)
T ss_pred EEeCCCcceEEEEecCC
Confidence 3 5788999999965
No 12
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=25.30 E-value=1.2e+02 Score=21.35 Aligned_cols=55 Identities=15% Similarity=0.232 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhccCCC-CCCCCH------hHHHHHHHHHHHHHhcCCCCCCCccCCcceEEEEE
Q 026194 70 VESFKEELFQAIKPLDR-GAEASP------EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWELL 127 (242)
Q Consensus 70 ~~~lK~~LL~~ia~t~r-G~~as~------~~r~~I~~lI~~LEa~np~~~P~~s~lL~G~W~Lv 127 (242)
.+..++++|.++...+. |..+.+ -++..|..++..||..+-... ...-.+.|.+-
T Consensus 4 ~~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~---~~~~~~~W~i~ 65 (68)
T smart00550 4 QDSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCK---QGGTPPLWKLT 65 (68)
T ss_pred chHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe---cCCCCCceEee
Confidence 46788999999987644 344333 245689999999999875421 11223788873
No 13
>PLN02845 Branched-chain-amino-acid aminotransferase-like protein
Probab=25.10 E-value=83 Score=29.23 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=26.9
Q ss_pred CcceEEEEEecCCeeEEeCCCCcEEEEEeCC
Q 026194 205 GRGQLEITYLDEELRISRGNRGNLFILKMVD 235 (242)
Q Consensus 205 ~~G~ld~tYLDddlRIsRG~~G~lFVl~R~~ 235 (242)
..|.-|.++||++=+|+-|..+|+|+.++.+
T Consensus 201 ~~G~deaLlln~~G~V~Egt~sNiF~v~~~~ 231 (336)
T PLN02845 201 ERGAFAGIWLDEEGFVAEGPNMNVAFLTNDG 231 (336)
T ss_pred HcCCCEEEEECCCCcEEEcCcceEEEEEECC
Confidence 4689999999999999999999998876543
No 14
>PF03076 GP3: Equine arteritis virus GP3; InterPro: IPR004310 This entry contains proteins encoded by ORF3 of Equine arteritis virus. They are possible envelope glcoproteins.
Probab=24.81 E-value=58 Score=26.54 Aligned_cols=18 Identities=44% Similarity=0.957 Sum_probs=15.4
Q ss_pred CCcceEEEEEecCCeeEE
Q 026194 204 SGRGQLEITYLDEELRIS 221 (242)
Q Consensus 204 ~~~G~ld~tYLDddlRIs 221 (242)
.+-|.+...|+|||||+-
T Consensus 121 ~glg~~sfsfidedlrlh 138 (160)
T PF03076_consen 121 AGLGQLSFSFIDEDLRLH 138 (160)
T ss_pred CCcceEEEEEecccceee
Confidence 456889999999999975
No 15
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=23.01 E-value=1.9e+02 Score=19.82 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHhHHHHHHHHHHHHHhcCC
Q 026194 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVND 110 (242)
Q Consensus 69 ~~~~lK~~LL~~ia~t~rG~~as~~~r~~I~~lI~~LEa~np 110 (242)
+..++|++|-+..+. +++++...+++.+.+|.+...
T Consensus 9 ~i~a~~e~l~~~~~~------lt~e~~~~l~~~~~al~~~~~ 44 (64)
T PF12644_consen 9 EIMATKEELEELEER------LTKEDKKRLEEYIDALGARWG 44 (64)
T ss_pred HHHHHHHHHHHHHhh------cCHHHHHHHHHHHHHHHHHhH
Confidence 566778888777655 788999999999999988653
No 16
>PRK05244 Der GTPase activator; Provisional
Probab=22.67 E-value=98 Score=26.62 Aligned_cols=34 Identities=29% Similarity=0.442 Sum_probs=27.5
Q ss_pred HHHHHHhccCCCCCCCCHhHHHHHHHHHHHHHhc
Q 026194 75 EELFQAIKPLDRGAEASPEDQARVDQIARKLEAV 108 (242)
Q Consensus 75 ~~LL~~ia~t~rG~~as~~~r~~I~~lI~~LEa~ 108 (242)
..|-.++...+.|...+.+++..|++-++..|++
T Consensus 107 ~rL~~LLdrLE~Ge~Ls~~dQ~yvD~~LdRie~L 140 (177)
T PRK05244 107 ERLNALLDRLEAGETLSAEDQKWVDEKLDRIDEL 140 (177)
T ss_pred HHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHH
Confidence 3566667777779999999999999888888776
No 17
>PF11668 Gp_UL130: HCMV glycoprotein pUL130; InterPro: IPR021038 This entry represents UL130 from Human cytomegalovirus, a glycoprotein secreted from infected cells that is incorporated into the virion envelope as a Golgi-matured form. The protein promotes endothelial cell infection through a producer cell modification of the virion [].
Probab=21.62 E-value=63 Score=27.06 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=45.2
Q ss_pred eeccCCCCCCcccccccC----CCCcccceeecccCCCCC-CCCccccccccceeeecccchhhHHHHHHHHHHHhccCC
Q 026194 11 ICFSSDFASSSLNLFYSK----PNIIIRTHLLFCPRNQKP-LNSSVSDKRRNRVSFFSGFSTKRVESFKEELFQAIKPLD 85 (242)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~p~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~lK~~LL~~ia~t~ 85 (242)
+||+.++.|-...+|-|= +.|-|+...++.=.+... .-.-....|..++.++-+. +..+-=+++..++.++
T Consensus 1 ~CP~~PsP~~~~~lF~sy~~~~t~peC~n~tLy~l~~~~~qtLIerpS~W~~k~~~YlsG----rn~~vF~~f~~~aa~~ 76 (156)
T PF11668_consen 1 YCPMYPSPPQNFGLFTSYQIYPTGPECGNETLYALHNRYNQTLIERPSPWVRKLIWYLSG----RNHPVFQKFRKMAASP 76 (156)
T ss_pred CCCCCCCCCCCcceeeeecccCCCCCCCCceEEEEEecCCcEEEecCcHHHHHHHHHHcc----CccHHHHHHHHHhcCC
Confidence 589889988888888765 688897744443233222 1122456787777666322 2223334444444443
Q ss_pred C-CCCCCHhHHH
Q 026194 86 R-GAEASPEDQA 96 (242)
Q Consensus 86 r-G~~as~~~r~ 96 (242)
. -...++||+.
T Consensus 77 ~~~~~It~edk~ 88 (156)
T PF11668_consen 77 NDIMQITEEDKK 88 (156)
T ss_pred Cceeeeehhhhh
Confidence 3 3344555543
No 18
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=21.49 E-value=84 Score=24.14 Aligned_cols=18 Identities=33% Similarity=0.861 Sum_probs=14.9
Q ss_pred EecCCeeEEeCCCCcEEEE
Q 026194 213 YLDEELRISRGNRGNLFIL 231 (242)
Q Consensus 213 YLDddlRIsRG~~G~lFVl 231 (242)
|+=.+||+-.|++| +||.
T Consensus 29 fVvhdirVi~G~~G-lfVA 46 (95)
T COG2088 29 FVVHDIRVIEGNNG-LFVA 46 (95)
T ss_pred EEEeccEEEeCCcc-eEEE
Confidence 34459999999999 9997
No 19
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=21.14 E-value=88 Score=22.83 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccCCcceEE
Q 026194 94 DQARVDQIARKLEAVNDIKEPLKSNLLNGKW 124 (242)
Q Consensus 94 ~r~~I~~lI~~LEa~np~~~P~~s~lL~G~W 124 (242)
++.+|.++|++|...++.+.......|.|.|
T Consensus 24 ~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~ 54 (89)
T TIGR00053 24 DLKKLLKKMEELINTLPLPEHYKDHPLRGPW 54 (89)
T ss_pred cHHHHHHHHHHHHcCCCCCcccCCccCcCCc
Confidence 4567888888888744443333333455543
No 20
>PRK07546 hypothetical protein; Provisional
Probab=20.79 E-value=1e+02 Score=26.27 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=26.1
Q ss_pred CcceEEEEEecCCeeEEeCCCCcEEEEEe
Q 026194 205 GRGQLEITYLDEELRISRGNRGNLFILKM 233 (242)
Q Consensus 205 ~~G~ld~tYLDddlRIsRG~~G~lFVl~R 233 (242)
..|+-|..++|++=+|+-|..+|+|+..-
T Consensus 122 ~~g~de~l~l~~~G~v~E~s~~Ni~~~~~ 150 (209)
T PRK07546 122 PAEADEVILLNERGEVCEGTITNVFLDRG 150 (209)
T ss_pred hCCCCEEEEECCCCcEEEcCceeEEEEEC
Confidence 37899999999999999999999999863
No 21
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=20.63 E-value=98 Score=33.05 Aligned_cols=34 Identities=35% Similarity=0.543 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHhHHHHHHHHHHHHHh
Q 026194 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEA 107 (242)
Q Consensus 69 ~~~~lK~~LL~~ia~t~rG~~as~~~r~~I~~lI~~LEa 107 (242)
...++|++||+.|..++|-+.. ..++++|.+|-.
T Consensus 775 r~~~mkeeLL~kverLg~~LP~-----NTLDqLIdelGG 808 (1300)
T KOG1513|consen 775 RVERMKEELLDKVERLGRELPP-----NTLDQLIDELGG 808 (1300)
T ss_pred HHHHHHHHHHHHHHHhcccCCc-----chHHHHHHHhCC
Confidence 4667999999999999887764 447888888853
No 22
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=20.24 E-value=1.5e+02 Score=25.42 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCCHhHHHHHHHHHHHHHhcCCCCC
Q 026194 68 KRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIKE 113 (242)
Q Consensus 68 ~~~~~lK~~LL~~ia~t~rG~~as~~~r~~I~~lI~~LEa~np~~~ 113 (242)
.+..+||++|-++|..-+- |+.+.|.+-|.+|++.++..+
T Consensus 136 ~~I~~L~e~Lq~~i~~Eef------EeAA~iRDqIr~Lk~k~~~dd 175 (176)
T COG3880 136 RKIIALKEALQDLIEREEF------EEAAVIRDQIRALKAKNGGDD 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCCCC
Confidence 3788999999999987432 677889999999999877543
Done!