Query 026194
Match_columns 242
No_of_seqs 147 out of 430
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:48:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 71.0 37 0.0013 27.0 9.6 98 115-222 7-108 (142)
2 1use_A VAsp, vasodilator-stimu 39.2 52 0.0018 21.1 4.3 19 65-83 4-22 (45)
3 2kvu_A MKL/myocardin-like prot 35.4 86 0.0029 22.2 5.5 37 69-111 30-66 (75)
4 1z8m_A Conserved hypothetical 29.4 36 0.0012 23.3 2.7 16 96-111 25-40 (88)
5 2a6s_A Toxin YOEB; YEFM, antit 28.8 68 0.0023 21.6 4.1 20 92-112 21-40 (84)
6 3p42_A Predicted protein; beta 27.9 71 0.0024 27.0 4.8 74 58-133 42-128 (236)
7 1qbj_A Protein (double-strande 24.6 87 0.003 22.0 4.0 56 71-130 9-73 (81)
8 3oei_C RELK (toxin RV3358); to 23.8 87 0.003 22.9 4.0 18 93-111 34-51 (96)
9 2heo_A Z-DNA binding protein 1 22.9 23 0.00077 23.8 0.6 52 70-126 8-65 (67)
10 1wmi_A RELE, hypothetical prot 18.2 1.5E+02 0.005 19.5 4.1 19 92-111 20-38 (90)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=71.00 E-value=37 Score=27.03 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=54.7
Q ss_pred CccCCcceEEEEEEEcccccccccCCcccccCCceEEEEecCCceeeeeeecCcccc---eeeeeeecCCceEEEEEeee
Q 026194 115 LKSNLLNGKWELLYTTSQSLLQTKRPKFLRPNGKIYQAINIDTLRAQNIETWPFFNQ---ATANLVPLNSKRVAVKFDYF 191 (242)
Q Consensus 115 ~~s~lL~G~W~LvyTS~~~~l~~~~p~f~~~~G~v~Q~Id~~~~~~~N~v~~p~~~~---v~a~~~~~~~~rv~V~F~~~ 191 (242)
.+...|.|-|+|++-....+-.... ...+.++-+| .++|++.|++-.+.-++ ..++++..++..+.-..+..
T Consensus 7 ~~~~~L~GvWQ~c~y~~~~~~~~~~----l~~s~~~KIl-S~DgtF~N~~m~~~~~aiIt~yGtY~l~SD~~Y~E~i~kn 81 (142)
T 4gzv_A 7 FKAADLKGIWQLCHYVSESPDVPGA----LKPSNTFKVL-SDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEKN 81 (142)
T ss_dssp GGSCCCCEEEEEEEEEESSTTSCCE----EEEEEEEEEE-CTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeEEeeEeecCCCCCce----EeecCceEEE-CCCCcEEEEEEeCCCCcEEEEeEEEEecCCCeeeeeeccc
Confidence 3446799999988444332211110 0134577888 47799999987664443 35677777777766655552
Q ss_pred EEeccccCCCCCCCcceEEEEEecCC-eeEEe
Q 026194 192 RIAGLIPIKSPGSGRGQLEITYLDEE-LRISR 222 (242)
Q Consensus 192 ~v~G~~p~~~p~~~~G~ld~tYLDdd-lRIsR 222 (242)
. -+|. .....-.|..-.+||+ |+|+-
T Consensus 82 i---~~p~--~~g~~n~L~fe~~~dn~l~lsy 108 (142)
T 4gzv_A 82 I---HLPM--LDNQDNILEFEIKDNDYLHLKY 108 (142)
T ss_dssp S---SSGG--GTTEEEEEEEEEETTTEEEEEE
T ss_pred c---cCcc--ccCCccEEEEEEccCCEEEEEE
Confidence 1 1122 1123345555566654 34443
No 2
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=39.16 E-value=52 Score=21.11 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.1
Q ss_pred cchhhHHHHHHHHHHHhcc
Q 026194 65 FSTKRVESFKEELFQAIKP 83 (242)
Q Consensus 65 ~~~~~~~~lK~~LL~~ia~ 83 (242)
+.+.+.+.+|++||+-+..
T Consensus 4 ~~~~dle~~KqEIL~E~Rk 22 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKK 22 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4456899999999988754
No 3
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=35.40 E-value=86 Score=22.21 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCHhHHHHHHHHHHHHHhcCCC
Q 026194 69 RVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDI 111 (242)
Q Consensus 69 ~~~~lK~~LL~~ia~t~rG~~as~~~r~~I~~lI~~LEa~np~ 111 (242)
.+.+||++|-. ||+..+--..+-|+.|.+.++..++.
T Consensus 30 kVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~ 66 (75)
T 2kvu_A 30 KVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPV 66 (75)
T ss_dssp CHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCC
T ss_pred cHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCC
Confidence 78899998765 56655444556677777777765544
No 4
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=29.37 E-value=36 Score=23.32 Aligned_cols=16 Identities=6% Similarity=0.216 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcCCC
Q 026194 96 ARVDQIARKLEAVNDI 111 (242)
Q Consensus 96 ~~I~~lI~~LEa~np~ 111 (242)
..+.++++.|...||.
T Consensus 25 ~~~~~~i~~l~~~~p~ 40 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPL 40 (88)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 4578888888654664
No 5
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=28.76 E-value=68 Score=21.58 Aligned_cols=20 Identities=0% Similarity=0.160 Sum_probs=13.7
Q ss_pred HhHHHHHHHHHHHHHhcCCCC
Q 026194 92 PEDQARVDQIARKLEAVNDIK 112 (242)
Q Consensus 92 ~~~r~~I~~lI~~LEa~np~~ 112 (242)
......|.++|+.|+. ||.+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 3446778888888865 5643
No 6
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=27.86 E-value=71 Score=27.05 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=47.7
Q ss_pred ceeeecccchhhHHHHHHHHHHHhccCCCCCCCCHhHHHHHHHHHHHHHhcCCCC-------------CCCccCCcceEE
Q 026194 58 RVSFFSGFSTKRVESFKEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDIK-------------EPLKSNLLNGKW 124 (242)
Q Consensus 58 ~~s~~~~~~~~~~~~lK~~LL~~ia~t~rG~~as~~~r~~I~~lI~~LEa~np~~-------------~P~~s~lL~G~W 124 (242)
+..++.-....+.+..|++||+.++.... ....++.+.+..++++|++..++. .|.....|.|-.
T Consensus 42 ga~l~r~~~~~~~~~qk~~ll~~L~~l~~--~~~~~~a~~~~~l~~~l~~~~~~gR~~v~ld~d~i~~~~~~n~~L~~gd 119 (236)
T 3p42_A 42 GALLTDSAAKAKALKDYQHVMAQLASWEA--EADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDY 119 (236)
T ss_dssp GCEEECHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTCCCCCCCCCCCCTTSCEESGGGSCBCCEEE
T ss_pred ccEEEecchHHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHcCCCCceEEeecCHHHHhcCCCCCCccCCCC
Confidence 44455443455677788888888765431 122356677889999999987642 122345788888
Q ss_pred EEEEEcccc
Q 026194 125 ELLYTTSQS 133 (242)
Q Consensus 125 ~LvyTS~~~ 133 (242)
.|..-...+
T Consensus 120 ~L~iP~r~~ 128 (236)
T 3p42_A 120 TLYTVQRPV 128 (236)
T ss_dssp EEECCCCCS
T ss_pred EEEECCCCC
Confidence 887766654
No 7
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=24.55 E-value=87 Score=21.97 Aligned_cols=56 Identities=9% Similarity=0.299 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhccCCCCCCCCHh--------HHHHHHHHHHHHHhcCCCCC-CCccCCcceEEEEEEEc
Q 026194 71 ESFKEELFQAIKPLDRGAEASPE--------DQARVDQIARKLEAVNDIKE-PLKSNLLNGKWELLYTT 130 (242)
Q Consensus 71 ~~lK~~LL~~ia~t~rG~~as~~--------~r~~I~~lI~~LEa~np~~~-P~~s~lL~G~W~LvyTS 130 (242)
.+..++||+++...+-|..++.. .+..|...+..||..+-... +. =.|.|.+.-..
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~----~~~~W~i~~~~ 73 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG----TPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESS----SSCEEEEC---
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC----CCCeeEEeCcH
Confidence 45677788888765544444432 35689999999998765321 11 12899885443
No 8
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=23.76 E-value=87 Score=22.86 Aligned_cols=18 Identities=6% Similarity=0.340 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHhcCCC
Q 026194 93 EDQARVDQIARKLEAVNDI 111 (242)
Q Consensus 93 ~~r~~I~~lI~~LEa~np~ 111 (242)
..+.+|.++|++|+. ||.
T Consensus 34 ~~~krI~~~I~~l~~-nP~ 51 (96)
T 3oei_C 34 KTARRITRLIGEIQR-DPF 51 (96)
T ss_dssp HHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHh-CCC
Confidence 567889999998874 664
No 9
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=22.90 E-value=23 Score=23.82 Aligned_cols=52 Identities=8% Similarity=0.199 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCH------hHHHHHHHHHHHHHhcCCCCCCCccCCcceEEEE
Q 026194 70 VESFKEELFQAIKPLDRGAEASP------EDQARVDQIARKLEAVNDIKEPLKSNLLNGKWEL 126 (242)
Q Consensus 70 ~~~lK~~LL~~ia~t~rG~~as~------~~r~~I~~lI~~LEa~np~~~P~~s~lL~G~W~L 126 (242)
.++.+.++|++++..++....++ -.+..|..+|..|++.+-... -=.|.|.|
T Consensus 8 m~~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~-----~~~G~y~l 65 (67)
T 2heo_A 8 GDNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS-----PSPKYWSI 65 (67)
T ss_dssp -CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE-----EETTEEEE
T ss_pred ccHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec-----CCCceEee
Confidence 34567889999876333222211 247889999999999865321 12477775
No 10
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=18.25 E-value=1.5e+02 Score=19.54 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHhcCCC
Q 026194 92 PEDQARVDQIARKLEAVNDI 111 (242)
Q Consensus 92 ~~~r~~I~~lI~~LEa~np~ 111 (242)
+..++.|.+.++.|+. +|.
T Consensus 20 ~~~~~~i~~~i~~L~~-~P~ 38 (90)
T 1wmi_A 20 KAHYRRFLEFRDILEY-EPV 38 (90)
T ss_dssp HHHHHHHHHHHHHHTT-CSC
T ss_pred HHHHHHHHHHHHHHHh-CCC
Confidence 4556778888888865 454
Done!