Query 026194
Match_columns 242
No_of_seqs 147 out of 430
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 07:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026194.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026194hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 32.7 19 0.0014 31.3 4.3 42 88-129 22-74 (427)
2 d2gyc31 a.108.1.1 (3:2-48) Rib 25.7 42 0.003 20.1 3.7 29 74-111 3-31 (47)
3 d2gu3a1 d.17.1.6 (A:99-161) Un 21.9 23 0.0017 22.6 2.1 15 207-221 32-46 (63)
4 d1wzla2 b.71.1.1 (A:503-585) M 21.6 23 0.0017 22.9 2.2 23 207-237 1-23 (83)
5 d1i2ka_ e.17.1.1 (A:) Aminodeo 18.0 42 0.0031 25.9 3.5 29 204-232 155-183 (269)
6 d1qpza1 a.35.1.5 (A:2-58) Puri 17.1 46 0.0033 20.5 2.7 18 89-106 26-43 (57)
7 d2hsga1 a.35.1.5 (A:2-58) Gluc 17.1 57 0.0042 20.0 3.2 18 89-106 27-44 (57)
8 d1z8ma1 d.298.1.2 (A:1-88) Hyp 15.1 22 0.0016 23.8 0.8 29 95-123 24-52 (88)
9 d1ztwa1 e.8.1.2 (A:24-278) MML 11.7 69 0.005 25.0 3.1 42 88-129 41-91 (255)
10 d2q22a1 d.365.1.1 (A:8-138) Un 11.5 1.8E+02 0.013 20.7 5.2 43 67-111 25-70 (131)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=32.73 E-value=19 Score=31.29 Aligned_cols=42 Identities=19% Similarity=0.424 Sum_probs=28.0
Q ss_pred CCCCHhHHHHHHHHHHHHHhcCCC-----CCCCccCCc------ceEEEEEEE
Q 026194 88 AEASPEDQARVDQIARKLEAVNDI-----KEPLKSNLL------NGKWELLYT 129 (242)
Q Consensus 88 ~~as~~~r~~I~~lI~~LEa~np~-----~~P~~s~lL------~G~W~LvyT 129 (242)
-..++++++++.++|++|+..+-. ..|-.++.+ .|+|+++--
T Consensus 22 ~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 22 WPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEEc
Confidence 357899999999999999998743 234444433 499999854
No 2
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=25.74 E-value=42 Score=20.08 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=22.8
Q ss_pred HHHHHHHhccCCCCCCCCHhHHHHHHHHHHHHHhcCCC
Q 026194 74 KEELFQAIKPLDRGAEASPEDQARVDQIARKLEAVNDI 111 (242)
Q Consensus 74 K~~LL~~ia~t~rG~~as~~~r~~I~~lI~~LEa~np~ 111 (242)
|+++|++|+... --+|.++|.++|..-+.
T Consensus 3 ke~Ileaia~MS---------VmdvveLi~amEEKFGV 31 (47)
T d2gyc31 3 KDQIIEAVAAMS---------VMDVVELISAMEEKFGV 31 (47)
T ss_dssp HHHHHHHHHHSC---------HHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHHHHhCc
Confidence 789999998853 35688899999987654
No 3
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=21.88 E-value=23 Score=22.63 Aligned_cols=15 Identities=47% Similarity=0.499 Sum_probs=11.9
Q ss_pred ceEEEEEecCCeeEE
Q 026194 207 GQLEITYLDEELRIS 221 (242)
Q Consensus 207 G~ld~tYLDddlRIs 221 (242)
-.||+||+|++=|.+
T Consensus 32 pvWEVtY~~~~~~l~ 46 (63)
T d2gu3a1 32 LLWEVTYLDKEGQYS 46 (63)
T ss_dssp EEEEEEEECTTSCEE
T ss_pred EEEEEEEEeCCCCEE
Confidence 367999999986665
No 4
>d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
Probab=21.55 E-value=23 Score=22.87 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=13.6
Q ss_pred ceEEEEEecCCeeEEeCCCCcEEEEEeCCCC
Q 026194 207 GQLEITYLDEELRISRGNRGNLFILKMVDPS 237 (242)
Q Consensus 207 G~ld~tYLDddlRIsRG~~G~lFVl~R~~~~ 237 (242)
|.+++.|-|++ +++|+|.|....
T Consensus 1 G~~~~l~ad~~--------~~v~af~R~~~~ 23 (83)
T d1wzla2 1 GNVRSWHADKQ--------ANLYAFVRTVQD 23 (83)
T ss_dssp CEEEEEEEETT--------TTEEEEEEEETT
T ss_pred CceEEEEECCC--------CCEEEEEEECCC
Confidence 56777777754 455555554443
No 5
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli [TaxId: 562]}
Probab=18.03 E-value=42 Score=25.89 Aligned_cols=29 Identities=28% Similarity=0.200 Sum_probs=25.7
Q ss_pred CCcceEEEEEecCCeeEEeCCCCcEEEEE
Q 026194 204 SGRGQLEITYLDEELRISRGNRGNLFILK 232 (242)
Q Consensus 204 ~~~G~ld~tYLDddlRIsRG~~G~lFVl~ 232 (242)
...|.-|.+++|++=+|+-|..+++|+.+
T Consensus 155 ~~~g~dd~llld~~g~v~E~s~sNif~vk 183 (269)
T d1i2ka_ 155 EQTNADEALVLDSEGWVTECCAANLFWRK 183 (269)
T ss_dssp TTSSCSEEEEEBTTSBEEECSSSEEEEEE
T ss_pred ccccccceeeecccchhhhccccceEEEe
Confidence 34688899999999999999999999864
No 6
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.09 E-value=46 Score=20.48 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=15.8
Q ss_pred CCCHhHHHHHHHHHHHHH
Q 026194 89 EASPEDQARVDQIARKLE 106 (242)
Q Consensus 89 ~as~~~r~~I~~lI~~LE 106 (242)
..+++.|++|.+++++|-
T Consensus 26 ~vs~~tr~rV~~~a~~lg 43 (57)
T d1qpza1 26 FVAEETRNAVWAAIKELH 43 (57)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 578999999999998885
No 7
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=17.06 E-value=57 Score=19.98 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=15.9
Q ss_pred CCCHhHHHHHHHHHHHHH
Q 026194 89 EASPEDQARVDQIARKLE 106 (242)
Q Consensus 89 ~as~~~r~~I~~lI~~LE 106 (242)
..+++.|++|.+++++|.
T Consensus 27 ~Vs~~tr~rV~~aa~~lg 44 (57)
T d2hsga1 27 NVKPSTRKKVLETIERLG 44 (57)
T ss_dssp TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 579999999999999884
No 8
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=15.10 E-value=22 Score=23.83 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccCCcceE
Q 026194 95 QARVDQIARKLEAVNDIKEPLKSNLLNGK 123 (242)
Q Consensus 95 r~~I~~lI~~LEa~np~~~P~~s~lL~G~ 123 (242)
...+.++|..|-..+|-+.-...-.|.|+
T Consensus 24 ~~~~~~~i~~L~~~~pl~~~~~dH~L~G~ 52 (88)
T d1z8ma1 24 DSVLNEVILTLRKKEPLDPQFQDHALKGK 52 (88)
T ss_dssp HHHHHHHHHHHTTSCCCCGGGCCEECSGG
T ss_pred HHHHHHHHHHHHcCCCCCccccCccccCc
Confidence 45678888888776665433333333343
No 9
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=11.68 E-value=69 Score=24.96 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=27.5
Q ss_pred CCCCHhHHHHHHHHHHHHHhcCC---CCCCCccCCc------ceEEEEEEE
Q 026194 88 AEASPEDQARVDQIARKLEAVND---IKEPLKSNLL------NGKWELLYT 129 (242)
Q Consensus 88 ~~as~~~r~~I~~lI~~LEa~np---~~~P~~s~lL------~G~W~LvyT 129 (242)
...++++++++.+.|++|.+.+- ...|-.++.+ .|+|+++--
T Consensus 41 ~~~~~~~~~~l~~~i~~ll~~G~I~p~~s~~~sp~~~V~Kk~~~~~R~v~D 91 (255)
T d1ztwa1 41 YPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKKPGTNDYRPVQD 91 (255)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSEEEECCSCBCCEEECCSSSSCCCCEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhhhceeeecCCCcccccccccccccceEEEeee
Confidence 45678888889888888888753 2233333321 368888764
No 10
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=11.47 E-value=1.8e+02 Score=20.66 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHhccCCC---CCCCCHhHHHHHHHHHHHHHhcCCC
Q 026194 67 TKRVESFKEELFQAIKPLDR---GAEASPEDQARVDQIARKLEAVNDI 111 (242)
Q Consensus 67 ~~~~~~lK~~LL~~ia~t~r---G~~as~~~r~~I~~lI~~LEa~np~ 111 (242)
..+.+.++++|...+...+. |..|..++ ++|+ ++.++++.-.-
T Consensus 25 ~~q~~~L~~eL~~~~~~adw~tiGImA~s~~-~Ai~-ALrs~~~~~~~ 70 (131)
T d2q22a1 25 PSEKESVRRALILITKLSDYQILGICADTAD-EGLL-AMKTYSHALGY 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEEEESSHH-HHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCHH-HHHH-HHHHHHHHhCC
Confidence 44788999999999999886 77665544 3344 45555554443
Done!