Query 026196
Match_columns 242
No_of_seqs 137 out of 830
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 07:50:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026196.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026196hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uuja_ a.221.1.1 (A:) Lissenc 95.5 0.0066 4.8E-07 40.3 4.0 32 40-71 7-38 (76)
2 d2nxpa1 d.379.1.1 (A:195-343) 89.3 0.24 1.7E-05 36.7 5.0 111 98-211 29-140 (149)
3 d2j4ba1 d.379.1.1 (A:18-148) T 78.8 1.9 0.00014 30.7 5.7 62 98-163 11-72 (131)
4 d2fd5a1 a.4.1.9 (A:1-76) Proba 55.1 3.3 0.00024 25.9 2.3 64 40-103 9-73 (76)
5 d1x4pa1 a.217.1.1 (A:8-60) Arg 53.5 17 0.0012 20.9 5.0 47 81-127 4-52 (53)
6 d1xb2b1 a.5.2.2 (B:56-111) Elo 51.4 21 0.0015 21.2 5.7 36 58-103 6-43 (56)
7 d1aipc1 a.5.2.2 (C:2-53) Elong 51.4 20 0.0014 21.0 5.7 36 58-103 4-41 (52)
8 d1jhfa1 a.4.5.2 (A:2-72) LexA 42.5 5.3 0.00039 25.0 1.7 35 37-71 4-38 (71)
9 d1efub3 a.5.2.2 (B:1-54) Elong 40.7 31 0.0023 20.2 5.7 35 59-103 7-43 (54)
10 d1tjca_ a.118.8.1 (A:) Prolyl 38.8 41 0.003 21.0 6.5 58 85-143 13-73 (95)
11 d2j49a1 d.379.1.1 (A:149-282) 37.7 13 0.00093 26.2 3.4 47 112-162 27-73 (134)
12 d2id6a1 a.4.1.9 (A:1-75) Trans 34.1 14 0.001 22.7 2.8 50 40-89 5-55 (75)
13 d1jr3a1 a.80.1.1 (A:243-368) g 28.9 33 0.0024 22.9 4.4 24 81-104 7-30 (126)
14 d1nzna_ a.118.8.1 (A:) Mitocho 28.0 71 0.0051 21.0 6.1 89 44-144 3-100 (122)
15 d1zk8a1 a.4.1.9 (A:6-77) Trans 27.9 7.9 0.00058 23.7 0.7 35 37-71 2-37 (72)
16 d2np5a1 a.4.1.9 (A:9-77) Trans 27.6 6.5 0.00047 23.9 0.2 51 40-90 3-54 (69)
17 d2gena1 a.4.1.9 (A:6-75) Proba 27.4 8.7 0.00063 23.3 0.8 32 40-71 2-34 (70)
18 d2g3ba1 a.4.1.9 (A:2-73) Putat 25.1 14 0.00099 22.5 1.4 50 40-89 4-54 (72)
19 d2g7sa1 a.4.1.9 (A:3-76) Putat 24.3 12 0.00087 22.9 1.0 32 40-71 6-38 (74)
20 d2gfna1 a.4.1.9 (A:4-80) Proba 23.7 17 0.0012 22.4 1.7 51 40-90 8-59 (77)
21 d1riqa1 a.203.1.1 (A:237-457) 23.6 84 0.0061 23.6 6.3 81 43-130 29-123 (221)
22 d1vi0a1 a.4.1.9 (A:6-77) Hypot 23.4 9 0.00065 23.3 0.3 32 40-71 3-35 (72)
23 d1k8kg_ a.118.13.1 (G:) Arp2/3 22.9 39 0.0028 23.9 3.8 25 82-106 32-56 (143)
24 d1jt6a1 a.4.1.9 (A:2-72) Multi 22.9 15 0.0011 22.2 1.3 50 40-89 3-53 (71)
25 d1t33a1 a.4.1.9 (A:1-88) Putat 21.9 14 0.001 23.4 1.1 32 40-71 14-45 (88)
26 d2hs5a2 a.78.1.1 (A:94-231) Pu 21.4 35 0.0026 22.7 3.3 26 79-104 101-126 (138)
27 d2oi8a1 a.4.1.9 (A:8-86) Putat 21.4 12 0.00091 23.1 0.7 32 40-71 11-43 (79)
28 d1zbpa1 e.61.1.1 (A:2-265) Hyp 21.3 75 0.0054 24.1 5.7 55 84-143 3-57 (264)
29 d1v7ba1 a.4.1.9 (A:1-74) Trans 21.2 9.9 0.00072 23.3 0.1 60 40-99 6-66 (74)
No 1
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.52 E-value=0.0066 Score=40.28 Aligned_cols=32 Identities=22% Similarity=0.578 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 026196 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~ 71 (242)
+.+|++-|++||..+||.+++.+|.+|+++..
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~ 38 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDM 38 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCC
Confidence 57899999999999999999999999998863
No 2
>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.31 E-value=0.24 Score=36.66 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=62.5
Q ss_pred HHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCCCCCccccc
Q 026196 98 EKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDL 177 (242)
Q Consensus 98 ~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~~~sp~~~l 177 (242)
.|+...-......-..+.|=+...-|++||.+|+..+|..|.+++-.-+...+ ...++.+.++..-.+..+.|....
T Consensus 29 ~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~---~~~I~~L~~i~~~~~l~~n~~~~~ 105 (149)
T d2nxpa1 29 HFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLTKKEHMKGNETMLD 105 (149)
T ss_dssp HHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCCSHHHHTTCGGGGG
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHH---HHHHHHHHcCCCHHHHhhhHHHHH
Confidence 45555432222222568999999999999999999999999998765554333 566777655544443334443332
Q ss_pred c-ChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHH
Q 026196 178 L-DISQRLKTASEVNAAILTSQSHEKDPKLPSLLK 211 (242)
Q Consensus 178 ~-~~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k 211 (242)
+ +.+-+-.+....-..++.++.-...+.+-.+++
T Consensus 106 ~r~nKy~I~ms~~s~~lLl~~L~~~~~~~il~Ii~ 140 (149)
T d2nxpa1 106 FRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQ 140 (149)
T ss_dssp GCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHHH
T ss_pred HhCCCeEEEecHHHHHHHHHHHHhCCChHHHHHHH
Confidence 2 223333333333333444433223444444444
No 3
>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}
Probab=78.83 E-value=1.9 Score=30.71 Aligned_cols=62 Identities=19% Similarity=0.191 Sum_probs=42.1
Q ss_pred HHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhh
Q 026196 98 EKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVAL 163 (242)
Q Consensus 98 ~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~L 163 (242)
.|+...-......-..+.|=+...-|++||.+|...+|.+|.+++-..+. ...++++.+.++
T Consensus 11 ~wv~~sld~yK~EL~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~----~~~~~i~~L~~i 72 (131)
T d2j4ba1 11 TWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY----NKSEEIKQFESI 72 (131)
T ss_dssp HHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC------CHHHHHHHTTC
T ss_pred HHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH----HHHHHHHHHHcc
Confidence 56655432222222568999999999999999999999999997644432 234567665553
No 4
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=55.11 E-value=3.3 Score=25.86 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 026196 40 KEDMNKLVMNFLVTEGYVDA-AEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDL 103 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~t-a~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~ 103 (242)
|..|.....+-|...||..+ ...+++++|+....-..-|..+..+...+...-++...+++.+.
T Consensus 9 r~~Il~aa~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~~~l~~~ 73 (76)
T d2fd5a1 9 RARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGEL 73 (76)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHhCCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56777888899999999876 78999999997533333333344455555544444444444443
No 5
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.48 E-value=17 Score=20.93 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhChh--hhhcCcchhhhhHHHHHHHHH
Q 026196 81 RMAVKKAVQCGNVEDAIEKVNDLNPE--ILDTNPQLFFHLQQQRLIELI 127 (242)
Q Consensus 81 r~~I~~~I~~G~~~~Ai~~i~~~~p~--l~~~~~~L~F~L~~q~fIEli 127 (242)
..++...|.+|.+.+-..-+.++.|. .++..+.|+|.-++.+.-|+=
T Consensus 4 IeqlV~~ii~G~LspkeR~~~k~~P~yWFLsde~SlEyKYYkLkLae~Q 52 (53)
T d1x4pa1 4 IDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEMQ 52 (53)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHSGGGCTTTCCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHhhcCCCeEEeecccchhHHHHHhhHHHhc
Confidence 45677888999999999999999998 456678899999999887763
No 6
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=51.44 E-value=21 Score=21.24 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHh--cCCHHHHHHHHHhh
Q 026196 58 DAAEKFRMESGTEPDIDLATITDRMAVKKAVQ--CGNVEDAIEKVNDL 103 (242)
Q Consensus 58 ~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~--~G~~~~Ai~~i~~~ 103 (242)
+..+.|.+.+|... ...++++. +||++.|++|+.+.
T Consensus 6 ~lvk~LRe~Tga~~----------~dcKkAL~e~~gD~ekA~e~Lrkk 43 (56)
T d1xb2b1 6 ELLMKLRRKTGYSF----------INCKKALETCGGDLKQAESWLHKQ 43 (56)
T ss_dssp HHHHHHHHHHCCCH----------HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCH----------HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44566777777532 23666664 68999999999864
No 7
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=51.36 E-value=20 Score=20.99 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHh--cCCHHHHHHHHHhh
Q 026196 58 DAAEKFRMESGTEPDIDLATITDRMAVKKAVQ--CGNVEDAIEKVNDL 103 (242)
Q Consensus 58 ~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~--~G~~~~Ai~~i~~~ 103 (242)
+..+.|.+.+|... ...++++. +||++.|++|+.+.
T Consensus 4 elvK~LR~~Tga~~----------~dcKkAL~e~~gD~ekA~e~Lr~~ 41 (52)
T d1aipc1 4 ELIKKLREATGAGM----------MDVKRALEDAGWDEEKAVQLLRER 41 (52)
T ss_dssp HHHHHHHHHHCCCH----------HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCH----------HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45667777777642 23666664 69999999999764
No 8
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=42.52 E-value=5.3 Score=24.97 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 026196 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~ 71 (242)
...+..+-..|.+|...+||.-|...+++..|+..
T Consensus 4 T~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~g~~S 38 (71)
T d1jhfa1 4 TARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRS 38 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCC
Confidence 34467788999999999999999999999999863
No 9
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=40.68 E-value=31 Score=20.22 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHHHHh--cCCHHHHHHHHHhh
Q 026196 59 AAEKFRMESGTEPDIDLATITDRMAVKKAVQ--CGNVEDAIEKVNDL 103 (242)
Q Consensus 59 ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~--~G~~~~Ai~~i~~~ 103 (242)
..+.|.+.+|... ...++++. +||++.|++|+.+.
T Consensus 7 ~iK~LR~~Tgag~----------~dCKkAL~e~~gD~ekA~e~Lr~k 43 (54)
T d1efub3 7 LVKELRERTGAGM----------MDCKKALTEANGDIELAIENMRKS 43 (54)
T ss_dssp HHHHHHHHHCCCH----------HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCH----------HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455666676532 33666664 69999999999764
No 10
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.81 E-value=41 Score=20.96 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=33.6
Q ss_pred HHHHhcCCHHHHHHHHHhhChhhhhcCcchhh---hhHHHHHHHHHhcCChHHHHHHHHHhh
Q 026196 85 KKAVQCGNVEDAIEKVNDLNPEILDTNPQLFF---HLQQQRLIELIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 85 ~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F---~L~~q~fIEli~~~~~~~Al~~~r~~l 143 (242)
+.+...||.+.|+.|.++-- .+...+....+ .++..-=.-..+.|+..+|+.+.++-+
T Consensus 13 ~~~~~~g~y~~A~~~~~~Al-~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 13 KVAYTEADYYHTELWMEQAL-RQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH-HHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence 34568899999999998642 22222211111 111111112346789999999998754
No 11
>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=37.72 E-value=13 Score=26.18 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=32.4
Q ss_pred cchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhh
Q 026196 112 PQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 162 (242)
Q Consensus 112 ~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~ 162 (242)
..+.|=+...-|++||.+| ..+|.+|..++-..+.. ....+++++.+
T Consensus 27 ~~lLyPvFvh~yL~Lv~~~-~~~A~~F~~~f~~~~~~---~~~~~i~~L~~ 73 (134)
T d2j49a1 27 SYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKD---FHGSEINRLFS 73 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHH---HHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHcC-HHHHHHHHHHhhHHHHH---HHHHHHHHHHc
Confidence 5688999999999999986 46788888866554432 22345554333
No 12
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=34.14 E-value=14 Score=22.69 Aligned_cols=50 Identities=10% Similarity=0.217 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHhCCCCCCCHHhHHHHHHHHHHHh
Q 026196 40 KEDMNKLVMNFLVTEGYVDA-AEKFRMESGTEPDIDLATITDRMAVKKAVQ 89 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~t-a~~f~~E~~i~~~~~~~~~~~r~~I~~~I~ 89 (242)
|+.+.+...+.+...|+..+ ...+++++|+....-..-|..+..+...+.
T Consensus 5 R~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~~k~~Ll~~~~ 55 (75)
T d2id6a1 5 RDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAY 55 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 67788889999999999754 588999999975433333444444444443
No 13
>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}
Probab=28.91 E-value=33 Score=22.86 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhC
Q 026196 81 RMAVKKAVQCGNVEDAIEKVNDLN 104 (242)
Q Consensus 81 r~~I~~~I~~G~~~~Ai~~i~~~~ 104 (242)
.-.+.++|.+||...|++.+++.+
T Consensus 7 ~~~L~~~I~~~d~~~~L~~l~~i~ 30 (126)
T d1jr3a1 7 ALSLVEAMVEANGERVMALINEAA 30 (126)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456888999999999999998754
No 14
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.05 E-value=71 Score=20.97 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHH-hc---CCHHHHHHHHHhhChhhhhcCc-c----h
Q 026196 44 NKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAV-QC---GNVEDAIEKVNDLNPEILDTNP-Q----L 114 (242)
Q Consensus 44 ~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I-~~---G~~~~Ai~~i~~~~p~l~~~~~-~----L 114 (242)
..++-.++--.-|.++-+.|.+...+.|.... .+...-.++ .. |++..|+..+++.. ..++ + .
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~----~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l----~~~~~~~~~~~ 74 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKS----TQFEYAWCLVRTRYNDDIRKGIVLLEELL----PKGSKEEQRDY 74 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHTTSSSHHHHHHHHHHHHHHT----TTSCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcchHHHHHHHHHHHHHH----hccCCchHHHH
Confidence 34455555555666777788888777664322 222333333 33 45567888887642 2221 1 1
Q ss_pred hhhhHHHHHHHHHhcCChHHHHHHHHHhhc
Q 026196 115 FFHLQQQRLIELIRNGKVEEALEFAQEELA 144 (242)
Q Consensus 115 ~F~L~~q~fIEli~~~~~~~Al~~~r~~l~ 144 (242)
.|.|= +-..+.|+..+|+.+.++-+.
T Consensus 75 ~~~Lg----~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 75 VFYLA----VGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHH----HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHhhhHHHHHHHHHHHH
Confidence 22221 123367899999999998654
No 15
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=27.90 E-value=7.9 Score=23.70 Aligned_cols=35 Identities=6% Similarity=0.115 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHH-HHHHHHHhCCCC
Q 026196 37 KIRKEDMNKLVMNFLVTEGYVDA-AEKFRMESGTEP 71 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~t-a~~f~~E~~i~~ 71 (242)
..+++.+...-.+-|...||..+ ...+++++|+..
T Consensus 2 g~t~e~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~ 37 (72)
T d1zk8a1 2 GLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRS 37 (72)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCH
T ss_pred CccHHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCH
Confidence 45688899999999999999754 588999999873
No 16
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=27.55 E-value=6.5 Score=23.86 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHhCCCCCCCHHhHHHHHHHHHHHhc
Q 026196 40 KEDMNKLVMNFLVTEGYVDA-AEKFRMESGTEPDIDLATITDRMAVKKAVQC 90 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~t-a~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~ 90 (242)
++.|.....+-+...||..+ ...+++++|+....-..-|..+..+...+.+
T Consensus 3 ~e~i~~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~sK~~L~~~~~~ 54 (69)
T d2np5a1 3 PERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALR 54 (69)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHhCCCHHHHHHHCcCHHHHHHHHHH
Confidence 56788888999999999765 4889999998743222222233444444433
No 17
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.35 E-value=8.7 Score=23.27 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHhCCCC
Q 026196 40 KEDMNKLVMNFLVTEGYVDA-AEKFRMESGTEP 71 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~t-a~~f~~E~~i~~ 71 (242)
|+.+.....+-+...||.++ ...+++++|+..
T Consensus 2 R~~il~aa~~l~~~~G~~~~si~~Ia~~agvs~ 34 (70)
T d2gena1 2 KDEILQAALACFSEHGVDATTIEMIRDRSGASI 34 (70)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCH
Confidence 56777888889999999765 488899999874
No 18
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=25.11 E-value=14 Score=22.55 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHhCCCCCCCHHhHHHHHHHHHHHh
Q 026196 40 KEDMNKLVMNFLVTEGYVDA-AEKFRMESGTEPDIDLATITDRMAVKKAVQ 89 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~t-a~~f~~E~~i~~~~~~~~~~~r~~I~~~I~ 89 (242)
|..+.....+-+...||.++ ...+++++|+....-..-|..+..+...+.
T Consensus 4 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~ly~~F~~K~~L~~~~~ 54 (72)
T d2g3ba1 4 RDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAAL 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCcCHHHHHHHCcCHHHHHHHHH
Confidence 66788888999999999865 488999999874322222333344444443
No 19
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=24.28 E-value=12 Score=22.92 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhCHHH-HHHHHHHHhCCCC
Q 026196 40 KEDMNKLVMNFLVTEGYVD-AAEKFRMESGTEP 71 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~-ta~~f~~E~~i~~ 71 (242)
|+.+...-.+.+..+||.. |...+++++|+..
T Consensus 6 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~ 38 (74)
T d2g7sa1 6 ADDILQCARTLIIRGGYNSFSYADISQVVGIRN 38 (74)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHHCcCc
Confidence 6678888889999999976 6688999999974
No 20
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=23.69 E-value=17 Score=22.36 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhCHHH-HHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhc
Q 026196 40 KEDMNKLVMNFLVTEGYVD-AAEKFRMESGTEPDIDLATITDRMAVKKAVQC 90 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~-ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~ 90 (242)
|..+.....+-|...||.. |...+++++|+....-..-|..+..+...+..
T Consensus 8 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~lY~~F~~K~~L~~~~~~ 59 (77)
T d2gfna1 8 RRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALR 59 (77)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHHCCCHHHHHHHCcCHHHHHHHHHH
Confidence 6778888889999999977 55899999998743222223334444444443
No 21
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=23.58 E-value=84 Score=23.55 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCC------------HHHHHHHHHhhChhhhhc
Q 026196 43 MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGN------------VEDAIEKVNDLNPEILDT 110 (242)
Q Consensus 43 l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~------------~~~Ai~~i~~~~p~l~~~ 110 (242)
--++|+||+- +.+|.=.-|+.|....--+..|+-||.+++-|. ++..++.....||.+.+.
T Consensus 29 a~rvIaDH~R-------a~~f~i~DGv~PsN~grGYvlRriiRRa~r~~~~lg~~~~~l~~lv~~v~~~~~~~ypel~~~ 101 (221)
T d1riqa1 29 ALRVIADHLR-------AITFAISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELS 101 (221)
T ss_dssp HHHHHHHHHH-------HHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred eeehhHHHHH-------HHHHHHhcCCCCCcCCCchHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHhhhcccchhhH
Confidence 3489999985 334444558877666666777888888886542 245677777888888664
Q ss_pred Ccchhh--hhHHHHHHHHHhcC
Q 026196 111 NPQLFF--HLQQQRLIELIRNG 130 (242)
Q Consensus 111 ~~~L~F--~L~~q~fIEli~~~ 130 (242)
...+.- ..-..+|.+.+.+|
T Consensus 102 ~~~I~~ii~~EE~~f~~tl~~G 123 (221)
T d1riqa1 102 REFVKGIVKGEEKRFIKTLKAG 123 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 333222 22234566655544
No 22
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=23.38 E-value=9 Score=23.34 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHhCCCC
Q 026196 40 KEDMNKLVMNFLVTEGYVDA-AEKFRMESGTEP 71 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~t-a~~f~~E~~i~~ 71 (242)
++.|...-.+-+...||..+ ...+++++|+..
T Consensus 3 ~~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~ 35 (72)
T d1vi0a1 3 YMQIIDAAVEVIAENGYHQSQVSKIAKQAGVAD 35 (72)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHHCcCH
Confidence 56677788888999999765 488999999874
No 23
>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.94 E-value=39 Score=23.93 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhChh
Q 026196 82 MAVKKAVQCGNVEDAIEKVNDLNPE 106 (242)
Q Consensus 82 ~~I~~~I~~G~~~~Ai~~i~~~~p~ 106 (242)
.+|+++|..|+..+|+..+-.+.|-
T Consensus 32 ~eVrslL~~G~~~~AL~~~L~~pP~ 56 (143)
T d1k8kg_ 32 GEVDSCLRQGNMTAALQAALKNPPI 56 (143)
T ss_dssp HHHHHHHHTTCHHHHHHHHTSSCCS
T ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC
Confidence 6799999999999999999887664
No 24
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=22.87 E-value=15 Score=22.24 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHhCCCCCCCHHhHHHHHHHHHHHh
Q 026196 40 KEDMNKLVMNFLVTEGYVDA-AEKFRMESGTEPDIDLATITDRMAVKKAVQ 89 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~t-a~~f~~E~~i~~~~~~~~~~~r~~I~~~I~ 89 (242)
|..+.....+-+...||..+ ...+++++|+....-..-|.....+...+.
T Consensus 3 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~~K~~L~~~~~ 53 (71)
T d1jt6a1 3 KDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEIL 53 (71)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHHCcCHhHHHHHCcCHHHHHHHHH
Confidence 56677777888888998654 478888999875332333333444444443
No 25
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=21.94 E-value=14 Score=23.39 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 026196 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~ 71 (242)
|..+...-.+-|...||..|...+++++|+..
T Consensus 14 r~~Il~aa~~l~~~~G~~~t~~~Ia~~agvs~ 45 (88)
T d1t33a1 14 KSQLIAAALAQFGEYGLHATTRDIAALAGQNI 45 (88)
T ss_dssp HHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHhccccCHHHHHHHhCCCh
Confidence 67788888899999999888889999999874
No 26
>d2hs5a2 a.78.1.1 (A:94-231) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=21.42 E-value=35 Score=22.70 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhC
Q 026196 79 TDRMAVKKAVQCGNVEDAIEKVNDLN 104 (242)
Q Consensus 79 ~~r~~I~~~I~~G~~~~Ai~~i~~~~ 104 (242)
..=..|.++|..||.+.|.+.+..+-
T Consensus 101 ~~H~~i~~ai~~~d~~~A~~~~~~Hl 126 (138)
T d2hs5a2 101 TRNHEIYDALAAGNTEAAGQLLKTYL 126 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456888888888888888887764
No 27
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=21.36 E-value=12 Score=23.12 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhCHHH-HHHHHHHHhCCCC
Q 026196 40 KEDMNKLVMNFLVTEGYVD-AAEKFRMESGTEP 71 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~-ta~~f~~E~~i~~ 71 (242)
+..+.....+-+...||.. |...+++++|+..
T Consensus 11 r~~il~aa~~l~~~~G~~~~t~~~Ia~~agvs~ 43 (79)
T d2oi8a1 11 RAEIKDHAWEQIATAGASALSLNAIAKRMGMSG 43 (79)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHhCCCC
Confidence 6677888889999999976 7799999999874
No 28
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=21.29 E-value=75 Score=24.12 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 026196 84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 84 I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l 143 (242)
.++++.+|++++|++.+++. ++.++ -....+..-+-=++..|+..+|+...+.-+
T Consensus 3 ~~~aL~~G~l~eAl~~l~~a----l~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~ 57 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEA----IKASP-KDASLRSSFIELLCIDGDFERADEQLMQSI 57 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHH----HHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH----HHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57889999999999999863 22221 123334444444667799999999888754
No 29
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=21.18 E-value=9.9 Score=23.32 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhCHHHH-HHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026196 40 KEDMNKLVMNFLVTEGYVDA-AEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK 99 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~t-a~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~ 99 (242)
|+.+-....+-+...||..+ ...+++++|+....-..-|..+..+...+.+.-.+...+.
T Consensus 6 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~ 66 (74)
T d1v7ba1 6 KEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKE 66 (74)
T ss_dssp HHHHHHHHHHHHHHSCSTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHhCcCcchHhhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 56677888899999999754 5889999998743222222333444444443333333333
Done!