BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026197
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 137/216 (63%), Gaps = 7/216 (3%)
Query: 28 EICTIPLDTAKVRLQLQKKAVA-GDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLH 86
++ T PLDTAKVRLQ+Q ++ A +Y+G+LGT+ T+ R EG SL+ G+V GL
Sbjct: 16 DLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQ 75
Query: 87 RQCLFGGLRIGLYEPVKTLYV-GKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRL 145
RQ F +RIGLY+ VK Y G + G + ++LAG TTGAL + +A PTD+VKVR
Sbjct: 76 RQMSFASVRIGLYDSVKQFYTKGSEHAG---IGSRLLAGSTTGALAVAVAQPTDVVKVRF 132
Query: 146 QAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQ 205
QA+ + G RRY + AY TI ++EG LW G PNVARNAI+N AEL +YD +K
Sbjct: 133 QAQARAGGG--RRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKD 190
Query: 206 TILKIPGFTDNVVTHLLSGLGAGFVAVCIGSPVDVV 241
T+LK TD++ H S GAGF I SPVDVV
Sbjct: 191 TLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVV 226
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 33 PLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFG 92
P D KVR Q Q +A G +Y+ + TIAREEG+ LWKG P + R +
Sbjct: 124 PTDVVKVRFQAQARAGGGR-----RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 93 GLRIGLYEPVK-TLYVGKDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRL--QAEG 149
+ Y+ +K TL D+P + G +IA+P D+VK R A G
Sbjct: 179 CAELVTYDLIKDTLLKANLMTDDLPC--HFTSAFGAGFCTTVIASPVDVVKTRYMNSALG 236
Query: 150 KLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVKQTIL 208
+ Y A + T++++EG A + G P+ R N +Y+Q+K+ ++
Sbjct: 237 Q--------YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 117 LSKKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPPGVPR-----RYSGALNAYSTIVK 171
++ K L T + +I P D KVRLQ +G+ G+ R +Y G L T+V+
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGE-SQGLVRTAASAQYRGVLGTILTMVR 59
Query: 172 QEGFAALWTGVGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLSGLGAGFVA 231
EG +L+ G+ + R + + YD VKQ K + + LL+G G +A
Sbjct: 60 TEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHA-GIGSRLLAGSTTGALA 118
Query: 232 VCIGSPVDVV 241
V + P DVV
Sbjct: 119 VAVAQPTDVV 128
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
Query: 38 KVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLHRQCLFGGLRIG 97
+V+L LQ + + A +YKG++ V I +E+G +S W+G + + R L
Sbjct: 30 RVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFA 89
Query: 98 LYEPVKTLYVG---------KDFVGDVPLSKKILAGLTTGALGIMIANPTDLVKVRLQAE 148
+ K +++G + F G++ +G GA + P D + RL A+
Sbjct: 90 FKDKYKQIFLGGVDRHKQFWRYFAGNLA------SGGAAGATSLCFVYPLDFARTRLAAD 143
Query: 149 -GKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASYDQVK 204
GK R ++G N + I K +G L+ G +V I AA YD K
Sbjct: 144 VGK--GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAK 198
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 22/187 (11%)
Query: 28 EICTI-PLDTAKVRLQLQKKAVAGDGVALPKYKGMLGTVATIAREEGMVSLWKGIVPGLH 86
+C + PLD A+ RL A G G A ++ G+ + I + +G+ L++G +
Sbjct: 126 SLCFVYPLDFARTRL----AADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQ 181
Query: 87 RQCLFGGLRIGLYEPVKTLYVGKDFVGDVPLSKKI------LAGLTTGALGIMIANPTDL 140
++ G+Y+ K G +P K + + T A+ +++ P D
Sbjct: 182 GIIIYRAAYFGVYDTAK---------GMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDT 232
Query: 141 VKVRLQAEGKLPPGVPRRYSGALNAYSTIVKQEGFAALWTGVGPNVARNAIINAAELASY 200
V+ R+ + G Y+G ++ + I K EG A + G NV R + A L Y
Sbjct: 233 VRRRMMMQSG-RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLY 290
Query: 201 DQVKQTI 207
D++K+ +
Sbjct: 291 DEIKKFV 297
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 119 KKILAGLTTGALGIMIANPTDLVKVRLQAEGKLPP-GVPRRYSGALNAYSTIVKQEGFAA 177
K LAG A+ P + VK+ LQ + ++Y G ++ I K++GF +
Sbjct: 9 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLS 68
Query: 178 LWTGVGPNVARNAIINAAELASYDQVKQTIL----KIPGFTDNVVTHLLSGLGAGFVAVC 233
W G NV R A A D+ KQ L + F +L SG AG ++C
Sbjct: 69 FWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC 128
Query: 234 IGSPVDV 240
P+D
Sbjct: 129 FVYPLDF 135
>pdb|2DTG|D Chain D, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
pdb|3LOH|D Chain D, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
pdb|3W14|D Chain D, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|Q Chain Q, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 214
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 128 GALGIMIANPTDLVKVRLQAEGKLPPGVPRRYSGA 162
G L + P +K + A L PGVP+R+SG+
Sbjct: 31 GNLYWLQQGPDGTIKRLIYATSSLDPGVPKRFSGS 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,634,528
Number of Sequences: 62578
Number of extensions: 271437
Number of successful extensions: 854
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 11
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)