Query 026199
Match_columns 242
No_of_seqs 175 out of 1315
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:56:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02685 iron superoxide dismu 100.0 2.7E-66 5.8E-71 470.6 18.4 216 15-237 15-232 (299)
2 PLN02184 superoxide dismutase 100.0 8.2E-66 1.8E-70 449.6 16.7 181 42-241 3-188 (212)
3 COG0605 SodA Superoxide dismut 100.0 3.4E-65 7.4E-70 441.4 16.4 171 47-237 1-174 (204)
4 PRK10543 superoxide dismutase; 100.0 7.4E-65 1.6E-69 438.0 16.2 167 48-237 1-167 (193)
5 PLN02622 iron superoxide dismu 100.0 3.3E-63 7.2E-68 444.2 17.3 192 30-237 27-219 (261)
6 PRK10925 superoxide dismutase; 100.0 5.6E-63 1.2E-67 430.1 15.5 169 48-237 1-178 (206)
7 PTZ00078 Superoxide dismutase 100.0 5.9E-61 1.3E-65 413.7 16.0 162 53-237 1-163 (193)
8 PLN02471 superoxide dismutase 100.0 2.7E-60 5.8E-65 419.2 15.5 182 38-241 19-211 (231)
9 KOG0876 Manganese superoxide d 100.0 2.6E-58 5.6E-63 402.6 14.7 176 45-237 23-202 (234)
10 PF02777 Sod_Fe_C: Iron/mangan 100.0 8.5E-34 1.8E-38 222.7 7.8 82 140-237 1-82 (106)
11 PF00081 Sod_Fe_N: Iron/mangan 100.0 1.7E-30 3.8E-35 196.0 4.5 82 49-135 1-82 (82)
12 PF13348 Y_phosphatase3C: Tyro 47.0 22 0.00047 25.0 2.8 19 145-163 33-51 (68)
13 TIGR02118 conserved hypothetic 32.2 41 0.00088 25.4 2.4 22 64-86 10-31 (100)
14 COG4700 Uncharacterized protei 27.1 50 0.0011 29.5 2.3 22 72-93 227-248 (251)
15 PF07110 EthD: EthD domain; I 26.7 58 0.0013 23.4 2.4 22 64-85 1-22 (95)
16 PF12826 HHH_2: Helix-hairpin- 22.8 53 0.0012 23.1 1.4 32 144-175 13-44 (64)
17 KOG0394 Ras-related GTPase [Ge 22.5 48 0.0011 29.2 1.4 20 150-169 93-112 (210)
18 KOG4540 Putative lipase essent 20.3 44 0.00096 31.6 0.7 12 13-24 277-288 (425)
19 COG5153 CVT17 Putative lipase 20.3 44 0.00096 31.6 0.7 12 13-24 277-288 (425)
No 1
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=2.7e-66 Score=470.59 Aligned_cols=216 Identities=79% Similarity=1.329 Sum_probs=193.5
Q ss_pred eeecCCCCCCCcccccccccccc-hhcccC-CceeeeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026199 15 WLTGQGLGGRSTRLPFHWRNKKM-EQRKTG-GRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG 92 (242)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~lp~LpY~~~aLeP~iS~~tl~~H~~khh~~YV~~LN~~l~~ 92 (242)
-|..||- |.|+ .|+.|.+ |.++.. ..+.++|+||+|||+|++|||+||++||++||+|||++||++||+++++
T Consensus 15 ~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~~LN~al~~ 89 (299)
T PLN02685 15 LLPSQGP---SRRM--QWKGKRRTCTRKAVSGVITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVDNLNKQIVG 89 (299)
T ss_pred cCcccCC---cccc--hhhhhhhhhhhhccccccccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566654 4443 6888877 444444 3457889999999999999999999999999999999999999999999
Q ss_pred CccCCCCChHHHHHHhhcCCCcchhhccchhhhhhhhhhcccCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 026199 93 TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQF 172 (242)
Q Consensus 93 ~~~~~~~sl~~ii~~~~~~~~~~~ifN~ag~~~NH~fFw~~L~P~~~~~P~~~L~~aI~~sFGS~e~fk~~F~~~A~s~f 172 (242)
+++ +++++++|+..+..+++...+||+|||++||+|||+||+|++++.|++.|+++|+++|||||+||++|+++|.++|
T Consensus 90 t~l-~~~sl~eii~~~~~~~~~~~ifNnaggh~NH~fFWe~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F~~aA~s~f 168 (299)
T PLN02685 90 TEL-DGMSLEDVVLITYNKGDMLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQF 168 (299)
T ss_pred chh-hcCCHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCC
Confidence 888 8889999987766666666799999999999999999999887899999999999999999999999999999999
Q ss_pred CccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCCCeeeEEecccchhhhccc
Q 026199 173 GSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIYHCV 237 (242)
Q Consensus 173 GSGWvWLv~d~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~d~P~~~~~~PLL~iDvWEHAYylDy 237 (242)
||||||||+++ ++|+++++.||.+...+++|.|+++.||++|+..+.+|||||||||||||+||
T Consensus 169 GSGWvWLV~~~-~~~~~~~~~np~~~~~~~~L~i~~t~n~d~pl~~~~~PLL~iDVWEHAYYlDY 232 (299)
T PLN02685 169 GSGWAWLAYKA-NRLDVGNAVNPCPSEEDKKLVVVKSPNAVNPLVWDYSPLLTIDVWEHAYYLDF 232 (299)
T ss_pred CCeEEEEEEcc-ccccccccccccccccCCceeEEeccCCCCCccCCCEeEEEEecchhhhHHHh
Confidence 99999999974 68999999999977678899999999999999999999999999999999999
No 2
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=8.2e-66 Score=449.56 Aligned_cols=181 Identities=71% Similarity=1.231 Sum_probs=167.4
Q ss_pred cCCceeeeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCChHHHHHHhhcCCCcchhhccc
Q 026199 42 TGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNA 121 (242)
Q Consensus 42 ~~~~~~~~~~lp~LpY~~~aLeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~sl~~ii~~~~~~~~~~~ifN~a 121 (242)
+++.+.++|+||+|||+|++|||+||++||++||+|||++||++||++++++++ +++++++|+..+...++...+||+|
T Consensus 3 ~~~~~~~~~~lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~~-~~~~l~~ii~~~~~~~~~~~ifnna 81 (212)
T PLN02184 3 ASSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNA 81 (212)
T ss_pred chhhhccceeCCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCchh-hcCCHHHHHHHhcccchHHHHHHhH
Confidence 345667889999999999999999999999999999999999999999999888 7889999987666555555699999
Q ss_pred hhhhhhhhhhcccCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCC
Q 026199 122 AQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKD 201 (242)
Q Consensus 122 g~~~NH~fFw~~L~P~~~~~P~~~L~~aI~~sFGS~e~fk~~F~~~A~s~fGSGWvWLv~d~~~~l~~~~~~~~~~~~~~ 201 (242)
||++||+|||+||+|+++++|++.|+++|+++|||+|+||++|.++|.++|||||+|||+| .
T Consensus 82 gg~~NH~~fw~~L~p~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~------------------~ 143 (212)
T PLN02184 82 AQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYS------------------N 143 (212)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEE------------------C
Confidence 9999999999999998777899999999999999999999999999999999999999998 2
Q ss_pred CceeEEeecCCCCCCCCCCeeeEEecccchhhhccc-----cccc
Q 026199 202 KSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIYHCV-----LVIE 241 (242)
Q Consensus 202 ~~L~i~~t~n~d~P~~~~~~PLL~iDvWEHAYylDy-----~~~~ 241 (242)
++|.|++|.|+++|++.+.+|||||||||||||+|| +||+
T Consensus 144 ~~L~i~~t~n~~~P~~~~~~PlL~iDvWEHAYyldY~n~r~~Yl~ 188 (212)
T PLN02184 144 EKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIK 188 (212)
T ss_pred CEEEEEeecCCCCCccCCCeeEEEEecchhhhHHHhccCHHHHHH
Confidence 689999999999999999999999999999999999 6664
No 3
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-65 Score=441.41 Aligned_cols=171 Identities=50% Similarity=0.932 Sum_probs=158.9
Q ss_pred eeeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCc--cCCCCChHHHHHHhhcCCCcchhhccchhh
Q 026199 47 SAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTE--LGDGKSLEDVVIASYNKGDLLPAFNNAAQA 124 (242)
Q Consensus 47 ~~~~~lp~LpY~~~aLeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~--~~~~~sl~~ii~~~~~~~~~~~ifN~ag~~ 124 (242)
+|.|+||+|||+|++|||+||++||++||+||||+||++||+++++++ + +.+++++++......+. .+|||+||+
T Consensus 1 ~~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~-~~~~~e~~~~~~~~~~~--~~~nn~~gh 77 (204)
T COG0605 1 RMAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEEL-EDLSLEEIIKKLAGLPA--ALFNNAGGH 77 (204)
T ss_pred CCCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccCCHHHHHHHHhcccH--HHHhcchhh
Confidence 367999999999999999999999999999999999999999999954 5 88899988876543322 589999999
Q ss_pred hhhhhhhcccCCC-CCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCc
Q 026199 125 WNHDFFWESMKPG-GGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKS 203 (242)
Q Consensus 125 ~NH~fFw~~L~P~-~~~~P~~~L~~aI~~sFGS~e~fk~~F~~~A~s~fGSGWvWLv~d~~~~l~~~~~~~~~~~~~~~~ 203 (242)
+||+|||++|+|+ ++++|+|+|+++|+++|||+|+||++|.++|.++|||||+|||+|+ +++
T Consensus 78 ~NH~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~-----------------~~k 140 (204)
T COG0605 78 WNHSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDP-----------------DGK 140 (204)
T ss_pred hhHHHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECC-----------------CCc
Confidence 9999999999995 7889999999999999999999999999999999999999999994 468
Q ss_pred eeEEeecCCCCCCCCCCeeeEEecccchhhhccc
Q 026199 204 LLVVKTPNAVNPLVWDYSPLLTIDVWEVNIYHCV 237 (242)
Q Consensus 204 L~i~~t~n~d~P~~~~~~PLL~iDvWEHAYylDy 237 (242)
|.|++|.||++|++.+.+|||||||||||||+||
T Consensus 141 L~i~~t~n~~~p~~~~~~PiL~lDvWEHAYYldY 174 (204)
T COG0605 141 LEIVSTYNQDTPLMWGSVPLLGLDVWEHAYYLDY 174 (204)
T ss_pred EEEEeccCCCCcccCCCCceEEecchHHHHHHHh
Confidence 9999999999999999999999999999999999
No 4
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=7.4e-65 Score=437.97 Aligned_cols=167 Identities=50% Similarity=0.914 Sum_probs=156.5
Q ss_pred eeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCChHHHHHHhhcCCCcchhhccchhhhhh
Q 026199 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNH 127 (242)
Q Consensus 48 ~~~~lp~LpY~~~aLeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~sl~~ii~~~~~~~~~~~ifN~ag~~~NH 127 (242)
|+|+||+|||+|++|||+||++||++||+|||++||++||++++++++ +.+++++|+... ...+||+|||++||
T Consensus 1 m~~~lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~~~-~~~~l~~ii~~~-----~~~ifnna~g~~NH 74 (193)
T PRK10543 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRSS-----EGGVFNNAAQVWNH 74 (193)
T ss_pred CCCcCCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcchh-hcCCHHHHHHhh-----HHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999888 788999988532 23599999999999
Q ss_pred hhhhcccCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEE
Q 026199 128 DFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVV 207 (242)
Q Consensus 128 ~fFw~~L~P~~~~~P~~~L~~aI~~sFGS~e~fk~~F~~~A~s~fGSGWvWLv~d~~~~l~~~~~~~~~~~~~~~~L~i~ 207 (242)
+|||++|+|++++.|++.|+++|+++|||+|+||++|+++|.++|||||||||+|+ +++|.|+
T Consensus 75 ~lfw~~L~p~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~-----------------~~~L~I~ 137 (193)
T PRK10543 75 TFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNA-----------------DGKLAIV 137 (193)
T ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC-----------------CCCEEEE
Confidence 99999999987778999999999999999999999999999999999999999983 5789999
Q ss_pred eecCCCCCCCCCCeeeEEecccchhhhccc
Q 026199 208 KTPNAVNPLVWDYSPLLTIDVWEVNIYHCV 237 (242)
Q Consensus 208 ~t~n~d~P~~~~~~PLL~iDvWEHAYylDy 237 (242)
+|.||++|++.+.+|||||||||||||+||
T Consensus 138 ~t~n~~~p~~~~~~PlL~lDvWEHAYyldY 167 (193)
T PRK10543 138 STSNAGTPLTTDATPLLTVDVWEHAYYIDY 167 (193)
T ss_pred eccCCCCCcCCCCEeEEEEecchhhhHHHh
Confidence 999999999999999999999999999999
No 5
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=3.3e-63 Score=444.24 Aligned_cols=192 Identities=53% Similarity=0.993 Sum_probs=170.4
Q ss_pred cccccccch-hcccCCceeeeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCChHHHHHHh
Q 026199 30 FHWRNKKME-QRKTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS 108 (242)
Q Consensus 30 ~~~~~~~~~-~~~~~~~~~~~~~lp~LpY~~~aLeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~sl~~ii~~~ 108 (242)
.|-||+.+. .-..++.+.+.|+||+|||++++|||+||++||++||+|||++||++||+++++++..+..++++|+..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~li~~~ 106 (261)
T PLN02622 27 LNLRNKQRRRSLQRASKVVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVT 106 (261)
T ss_pred hhhccccccccccccccccccccCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcCCHHHHHHHh
Confidence 356666554 2233356778899999999999999999999999999999999999999999886421678899998765
Q ss_pred hcCCCcchhhccchhhhhhhhhhcccCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCcccc
Q 026199 109 YNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRAD 188 (242)
Q Consensus 109 ~~~~~~~~ifN~ag~~~NH~fFw~~L~P~~~~~P~~~L~~aI~~sFGS~e~fk~~F~~~A~s~fGSGWvWLv~d~~~~l~ 188 (242)
...+....+||+|||++||+|||++|+|++++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+
T Consensus 107 ~~~~~~~~vfnna~g~~NH~~Fw~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d~----- 181 (261)
T PLN02622 107 YNNGNPLPEFNNAAQVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKR----- 181 (261)
T ss_pred hccchhHHHHHHHHhHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEeC-----
Confidence 555555679999999999999999999987778999999999999999999999999999999999999999994
Q ss_pred ccccCCCCCCCCCCceeEEeecCCCCCCCCCCeeeEEecccchhhhccc
Q 026199 189 VANAVNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEVNIYHCV 237 (242)
Q Consensus 189 ~~~~~~~~~~~~~~~L~i~~t~n~d~P~~~~~~PLL~iDvWEHAYylDy 237 (242)
.+++|.|++|.||++|++.+.+|||||||||||||+||
T Consensus 182 -----------~~g~L~I~~t~N~~~Pl~~~~~PLL~lDvWEHAYYlDY 219 (261)
T PLN02622 182 -----------EERRLEVVKTSNAINPLVWDDIPIICLDVWEHAYYLDY 219 (261)
T ss_pred -----------CCCeEEEEecCCCCCCccCCCEeEEEEechhhhhHHhh
Confidence 46789999999999999999999999999999999999
No 6
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=5.6e-63 Score=430.11 Aligned_cols=169 Identities=41% Similarity=0.690 Sum_probs=152.8
Q ss_pred eeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-ccCCCCChHHHHHHhhcCCC--cchhhccchhh
Q 026199 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGT-ELGDGKSLEDVVIASYNKGD--LLPAFNNAAQA 124 (242)
Q Consensus 48 ~~~~lp~LpY~~~aLeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~-~~~~~~sl~~ii~~~~~~~~--~~~ifN~ag~~ 124 (242)
|+|+||+|||+|++|||+||++||++||+|||++||++||++++++ ++ +.+++++|+......++ +..+||+|||+
T Consensus 1 m~~~lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~i~nna~g~ 79 (206)
T PRK10925 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEF-ANLPVEELITKLDQLPADKKTVLRNNAGGH 79 (206)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccHHh-hcCCHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999986 45 67899999865543333 23488999999
Q ss_pred hhhhhhhcccCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCce
Q 026199 125 WNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSL 204 (242)
Q Consensus 125 ~NH~fFw~~L~P~~~~~P~~~L~~aI~~sFGS~e~fk~~F~~~A~s~fGSGWvWLv~d~~~~l~~~~~~~~~~~~~~~~L 204 (242)
+||+|||+||+|+ +.|+++|+++|+++|||||+||++|+++|.++|||||||||+| +++|
T Consensus 80 ~NH~~fw~~L~P~--~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~------------------~~~L 139 (206)
T PRK10925 80 ANHSLFWKGLKKG--TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK------------------GDKL 139 (206)
T ss_pred HHHHHHHhccCCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEe------------------CCEE
Confidence 9999999999993 4799999999999999999999999999999999999999998 3689
Q ss_pred eEEeecCCCCCCCC------CCeeeEEecccchhhhccc
Q 026199 205 LVVKTPNAVNPLVW------DYSPLLTIDVWEVNIYHCV 237 (242)
Q Consensus 205 ~i~~t~n~d~P~~~------~~~PLL~iDvWEHAYylDy 237 (242)
.|++|.||++|++. +.+|||||||||||||+||
T Consensus 140 ~i~~t~N~~~p~~~~~~~~~~~~PlL~iDvWEHAYyldY 178 (206)
T PRK10925 140 AVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKF 178 (206)
T ss_pred EEEeccCCCCCccccccccCCCceeEEEechHHHhHHHH
Confidence 99999999999974 3489999999999999999
No 7
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=5.9e-61 Score=413.68 Aligned_cols=162 Identities=48% Similarity=0.878 Sum_probs=151.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCChHHHHHHhhcCCCcchhhccchhhhhhhhhhc
Q 026199 53 KPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWE 132 (242)
Q Consensus 53 p~LpY~~~aLeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~sl~~ii~~~~~~~~~~~ifN~ag~~~NH~fFw~ 132 (242)
|+|||+|++|||+||++||++||++||++||++||++++++++ +.+++++++... ...+||+|||++||+|||+
T Consensus 1 p~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~~-~~~~~~~ii~~~-----~~~~~n~a~g~~NH~lfw~ 74 (193)
T PTZ00078 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTPL-ENKTLEELIKEY-----SGAVFNNAAQIWNHNFYWL 74 (193)
T ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999887 778999988543 2368999999999999999
Q ss_pred ccCCCCCCCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCC
Q 026199 133 SMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNA 212 (242)
Q Consensus 133 ~L~P~~~~~P~~~L~~aI~~sFGS~e~fk~~F~~~A~s~fGSGWvWLv~d~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~ 212 (242)
+|+|++++.|+++|+++|+++|||+|+||++|+++|.++|||||||||++ .+++|.|++|+|+
T Consensus 75 ~L~p~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~-----------------~~~~L~i~~t~n~ 137 (193)
T PTZ00078 75 SMGPNGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLK-----------------NDGKLEIVQTHDA 137 (193)
T ss_pred hcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEC-----------------CCCcEEEEeccCC
Confidence 99998777899999999999999999999999999999999999999985 3689999999999
Q ss_pred CCCCCCC-CeeeEEecccchhhhccc
Q 026199 213 VNPLVWD-YSPLLTIDVWEVNIYHCV 237 (242)
Q Consensus 213 d~P~~~~-~~PLL~iDvWEHAYylDy 237 (242)
++|++.+ .+|||||||||||||+||
T Consensus 138 ~~p~~~~~~~PlL~lDvWEHAYyldY 163 (193)
T PTZ00078 138 GNPIKDNTGKPLLTCDIWEHAYYIDY 163 (193)
T ss_pred CCCccCCCCceEEEeccchhhhHHHH
Confidence 9999864 799999999999999999
No 8
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=2.7e-60 Score=419.24 Aligned_cols=182 Identities=34% Similarity=0.516 Sum_probs=156.3
Q ss_pred hhcccCCceeeeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcc-CCCCChHHHHHHhhcCCCcch
Q 026199 38 EQRKTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTEL-GDGKSLEDVVIASYNKGDLLP 116 (242)
Q Consensus 38 ~~~~~~~~~~~~~~lp~LpY~~~aLeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~-~~~~sl~~ii~~~~~~~~~~~ 116 (242)
.+|.++.+..++|+||+|||+|++|||+||++||++||+|||++||++||+++++.+. .+..++.+++.. ...
T Consensus 19 ~~~~~~~~~~~~~~lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~~~~~~i~~~------~~~ 92 (231)
T PLN02471 19 SSRLLSFRGLQTFTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKL------QSA 92 (231)
T ss_pred chhhhhhcccccccCCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhcccCCHHHHHhh------hhh
Confidence 4677777777899999999999999999999999999999999999999999987531 134455555431 124
Q ss_pred hhccchhhhhhhhhhcccCCC--CCCC-CCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccC
Q 026199 117 AFNNAAQAWNHDFFWESMKPG--GGGK-PSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAV 193 (242)
Q Consensus 117 ifN~ag~~~NH~fFw~~L~P~--~~~~-P~~~L~~aI~~sFGS~e~fk~~F~~~A~s~fGSGWvWLv~d~~~~l~~~~~~ 193 (242)
++|++||++||+|||+||+|. +++. |+++|.++|+++|||+|+||++|.++|.++|||||||||+|+
T Consensus 93 ~~~n~gg~~NH~~fw~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d~---------- 162 (231)
T PLN02471 93 IKFNGGGHVNHSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLDK---------- 162 (231)
T ss_pred hhhHHHHHHhHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEeC----------
Confidence 788899999999999999985 3334 679999999999999999999999999999999999999994
Q ss_pred CCCCCCCCCceeEEeecCCCCCCCCC--CeeeEEecccchhhhccc-----cccc
Q 026199 194 NPLPSEKDKSLLVVKTPNAVNPLVWD--YSPLLTIDVWEVNIYHCV-----LVIE 241 (242)
Q Consensus 194 ~~~~~~~~~~L~i~~t~n~d~P~~~~--~~PLL~iDvWEHAYylDy-----~~~~ 241 (242)
.+++|.|++|.|||+|+..+ .+|||||||||||||+|| +||+
T Consensus 163 ------~~~~L~i~~t~n~d~~~~~~~~~~PiL~iDvWEHAYylDY~n~R~~Yi~ 211 (231)
T PLN02471 163 ------ELKKLVVETTANQDPLVTKGPSLVPLLGIDVWEHAYYLQYKNVRPDYLK 211 (231)
T ss_pred ------CCCeEEEEeecCCCCCcccCCCCceEEEeechhhHhHHHhccCHHHHHH
Confidence 46899999999999887654 589999999999999999 6664
No 9
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-58 Score=402.60 Aligned_cols=176 Identities=47% Similarity=0.846 Sum_probs=160.5
Q ss_pred ceeeeeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCChHHHHHHhhcCCCcchhhccchhh
Q 026199 45 RISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQA 124 (242)
Q Consensus 45 ~~~~~~~lp~LpY~~~aLeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~sl~~ii~~~~~~~~~~~ifN~ag~~ 124 (242)
.++.+++||+|||+|++|||.||+++|++||.|||++||++||+++++++...++...+++. ++..++....||+||++
T Consensus 23 ~v~~~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~-t~~~~~~a~~Fn~~~~~ 101 (234)
T KOG0876|consen 23 AVRQKATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSL-TAIAPQPAPKFNGAGHI 101 (234)
T ss_pred eeeeeecCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhH-hccChhhhhhcCCcccc
Confidence 46788999999999999999999999999999999999999999999876425555555554 66678888999999999
Q ss_pred hhhhhhhcccCCCCCCCCCHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCc
Q 026199 125 WNHDFFWESMKPGGGGKPSGE-LLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKS 203 (242)
Q Consensus 125 ~NH~fFw~~L~P~~~~~P~~~-L~~aI~~sFGS~e~fk~~F~~~A~s~fGSGWvWLv~d~~~~l~~~~~~~~~~~~~~~~ 203 (242)
+||+|||++|.|++++.|++. |.++|+++|||+|+|+++|.+++.++|||||+|||+++ ..++
T Consensus 102 ~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~----------------~~~k 165 (234)
T KOG0876|consen 102 YNHSFFWENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNK----------------ELKK 165 (234)
T ss_pred ccchhhhhhccCCCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEcC----------------CCCe
Confidence 999999999999888888876 99999999999999999999999999999999999994 3479
Q ss_pred eeEEeecCCCCCCCCC---CeeeEEecccchhhhccc
Q 026199 204 LLVVKTPNAVNPLVWD---YSPLLTIDVWEVNIYHCV 237 (242)
Q Consensus 204 L~i~~t~n~d~P~~~~---~~PLL~iDvWEHAYylDy 237 (242)
|.|++|.||.+|+.++ .+|||||||||||||+||
T Consensus 166 L~i~~T~Na~~P~~~~t~~~vPLl~IDvWeHAYyldY 202 (234)
T KOG0876|consen 166 LFILTTYNAGDPLVWTTGQLVPLLGIDVWEHAYYLDY 202 (234)
T ss_pred EEEEecCCCCCCeeccCCCccceEEEecchhHhHHHh
Confidence 9999999998899886 899999999999999999
No 10
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=100.00 E-value=8.5e-34 Score=222.71 Aligned_cols=82 Identities=54% Similarity=1.002 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEecCccccccccCCCCCCCCCCceeEEeecCCCCCCCCC
Q 026199 140 GKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVYKANNRADVANAVNPLPSEKDKSLLVVKTPNAVNPLVWD 219 (242)
Q Consensus 140 ~~P~~~L~~aI~~sFGS~e~fk~~F~~~A~s~fGSGWvWLv~d~~~~l~~~~~~~~~~~~~~~~L~i~~t~n~d~P~~~~ 219 (242)
++|++.|+++|+++|||+|+||++|.++|.++|||||+|||+|+ .+++|.|+++.|+++|+..+
T Consensus 1 g~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~----------------~~~~L~i~~t~n~~~p~~~~ 64 (106)
T PF02777_consen 1 GKPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYDP----------------SDGKLSIISTPNHDTPIIWG 64 (106)
T ss_dssp SS-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEET----------------TTTEEEEEEEETTTBGGGGT
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeecc----------------ccceeeeeeecccccccchh
Confidence 47999999999999999999999999999999999999999994 57899999999999999999
Q ss_pred CeeeEEecccchhhhccc
Q 026199 220 YSPLLTIDVWEVNIYHCV 237 (242)
Q Consensus 220 ~~PLL~iDvWEHAYylDy 237 (242)
.+|||||||||||||+||
T Consensus 65 ~~Pll~iD~weHaY~~dy 82 (106)
T PF02777_consen 65 LIPLLCIDVWEHAYYLDY 82 (106)
T ss_dssp EEEEEEEE-SGGGTHHHH
T ss_pred hccchhhhhhHHHHHHHH
Confidence 999999999999999999
No 11
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.96 E-value=1.7e-30 Score=195.97 Aligned_cols=82 Identities=49% Similarity=0.860 Sum_probs=69.1
Q ss_pred eeEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCChHHHHHHhhcCCCcchhhccchhhhhhh
Q 026199 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHD 128 (242)
Q Consensus 49 ~~~lp~LpY~~~aLeP~iS~~tl~~H~~khh~~YV~~LN~~l~~~~~~~~~sl~~ii~~~~~~~~~~~ifN~ag~~~NH~ 128 (242)
+|+||+|||+|++|||+||++||++||+|||++||++||++++++++ +.+++++++.. ..+..+||+|||++||+
T Consensus 1 ~f~Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~~~-~~~~~~~~~~~----~~~~~~~nn~gg~~NH~ 75 (82)
T PF00081_consen 1 KFELPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKTEL-EGKSLEEIISN----ALRAALRNNAGGHYNHS 75 (82)
T ss_dssp SS-----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTCHH-HTSTHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccchhhhhh----hhhHHHHHHcchhhhHH
Confidence 48999999999999999999999999999999999999999999987 78899999865 23457999999999999
Q ss_pred hhhcccC
Q 026199 129 FFWESMK 135 (242)
Q Consensus 129 fFw~~L~ 135 (242)
|||+||+
T Consensus 76 ~fw~~ls 82 (82)
T PF00081_consen 76 FFWENLS 82 (82)
T ss_dssp HHHHTB-
T ss_pred HHHHHcC
Confidence 9999995
No 12
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=46.97 E-value=22 Score=24.95 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=15.9
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q 026199 145 ELLGLIERDFGSFEKFLEE 163 (242)
Q Consensus 145 ~L~~aI~~sFGS~e~fk~~ 163 (242)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4568899999999999854
No 13
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=32.18 E-value=41 Score=25.38 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 026199 64 PHMSKDTLEFHWGKHHRAYVDNL 86 (242)
Q Consensus 64 P~iS~~tl~~H~~khh~~YV~~L 86 (242)
| +|.++++.||..+|...+.++
T Consensus 10 p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 10 P-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred C-CCHHHHHHHHHhccHHHHHhC
Confidence 6 899999999999999998875
No 14
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=27.06 E-value=50 Score=29.50 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 026199 72 EFHWGKHHRAYVDNLNKQIVGT 93 (242)
Q Consensus 72 ~~H~~khh~~YV~~LN~~l~~~ 93 (242)
.-||.|||++.++..|..++++
T Consensus 227 ~~H~rkh~reW~~~A~~~~~qs 248 (251)
T COG4700 227 RPHYRKHHREWIKTANERLKQS 248 (251)
T ss_pred chhHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999887654
No 15
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=26.68 E-value=58 Score=23.45 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q 026199 64 PHMSKDTLEFHWGKHHRAYVDN 85 (242)
Q Consensus 64 P~iS~~tl~~H~~khh~~YV~~ 85 (242)
|.+|.+.+.-||...|...|.+
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~ 22 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKR 22 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHH
Confidence 7899999999999989888754
No 16
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=22.77 E-value=53 Score=23.06 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=20.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCcc
Q 026199 144 GELLGLIERDFGSFEKFLEEFKAAAATQFGSG 175 (242)
Q Consensus 144 ~~L~~aI~~sFGS~e~fk~~F~~~A~s~fGSG 175 (242)
..-.+.+-+.|||+|++++.=.+.-..+-|-|
T Consensus 13 ~~~ak~L~~~f~sl~~l~~a~~e~L~~i~gIG 44 (64)
T PF12826_consen 13 EKTAKLLAKHFGSLEALMNASVEELSAIPGIG 44 (64)
T ss_dssp HHHHHHHHHCCSCHHHHCC--HHHHCTSTT--
T ss_pred HHHHHHHHHHcCCHHHHHHcCHHHHhccCCcC
Confidence 45677888999999999876555444554544
No 17
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=22.55 E-value=48 Score=29.23 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.0
Q ss_pred HHhhcCCHHHHHHHHHHHHh
Q 026199 150 IERDFGSFEKFLEEFKAAAA 169 (242)
Q Consensus 150 I~~sFGS~e~fk~~F~~~A~ 169 (242)
+.++|+++++|+++|...|.
T Consensus 93 ~~~Sfe~L~~Wr~EFl~qa~ 112 (210)
T KOG0394|consen 93 NPKSFENLENWRKEFLIQAS 112 (210)
T ss_pred ChhhhccHHHHHHHHHHhcC
Confidence 34799999999999999996
No 18
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=20.28 E-value=44 Score=31.57 Aligned_cols=12 Identities=67% Similarity=1.367 Sum_probs=10.8
Q ss_pred ceeeecCCCCCC
Q 026199 13 TIWLTGQGLGGR 24 (242)
Q Consensus 13 ~~~~~~~~~~~~ 24 (242)
.|||||..|||.
T Consensus 277 ~iwlTGHSLGGa 288 (425)
T KOG4540|consen 277 RIWLTGHSLGGA 288 (425)
T ss_pred eEEEeccccchH
Confidence 699999999984
No 19
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=20.28 E-value=44 Score=31.57 Aligned_cols=12 Identities=67% Similarity=1.367 Sum_probs=10.8
Q ss_pred ceeeecCCCCCC
Q 026199 13 TIWLTGQGLGGR 24 (242)
Q Consensus 13 ~~~~~~~~~~~~ 24 (242)
.|||||..|||.
T Consensus 277 ~iwlTGHSLGGa 288 (425)
T COG5153 277 RIWLTGHSLGGA 288 (425)
T ss_pred eEEEeccccchH
Confidence 699999999984
Done!