BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026201
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S81|A Chain A, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
pdb|3S81|B Chain B, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
pdb|3S81|C Chain C, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
pdb|3S81|D Chain D, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium
Length = 268
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 36/182 (19%)
Query: 60 SKKSFGSKAAPFCSDALLNQANTVGIVGGASVDSTLNLLGKLVQL---SGEENDFPFLLC 116
S G++ F S+A+ +T+GI+GG +T ++L K V+L S ++ P ++
Sbjct: 9 SGVDLGTENLYFQSNAM---KHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVS 65
Query: 117 SDPLLNKE---LLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPC 173
S P + LLS S + L R LE AGA CIV+PC
Sbjct: 66 SIPDIPDRTACLLSGGPSPY------------------RYLERYLHMLEDAGAECIVIPC 107
Query: 174 HLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ 233
+ +H W D++ + + + ++ S +G+LA NA L G YQ
Sbjct: 108 NTAHYWFDDLQNVAKARMISILDATLGDIPP---------SARHVGLLATNATLATGLYQ 158
Query: 234 EK 235
+K
Sbjct: 159 KK 160
>pdb|3S7Z|A Chain A, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium Complexed With Succinate
pdb|3S7Z|B Chain B, Crystal Structure Of Putative Aspartate Racemase From
Salmonella Typhimurium Complexed With Succinate
Length = 268
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 33/161 (20%)
Query: 81 NTVGIVGGASVDSTLNLLGKLVQL---SGEENDFPFLLCSDPLLNKE---LLSHDRSSFS 134
+T+GI+GG +T + L K V+L S ++ P ++ S P + LLS S +
Sbjct: 27 HTIGILGGXGPAATADXLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPY- 85
Query: 135 SLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194
L R LE AGA CIV+PC+ +H W D+ +V
Sbjct: 86 -----------------RYLERYLHXLEDAGAECIVIPCNTAHYWFDD--------LQNV 120
Query: 195 SECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEK 235
++ + +A + + S +G+LA NA L G YQ+K
Sbjct: 121 AKARXISILDATLGDIPP-SARHVGLLATNATLATGLYQKK 160
>pdb|1JFL|A Chain A, Crystal Structure Determination Of Aspartate Racemase From
An Archaea
pdb|1JFL|B Chain B, Crystal Structure Determination Of Aspartate Racemase From
An Archaea
Length = 228
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 26/159 (16%)
Query: 81 NTVGIVGGASVDSTLNLLGKLVQLSGEENDF---PFLLCSDPLLNKELLSHDRSSFSSLN 137
T+GI+GG +T L ++V + + D ++ ++P + DR+++
Sbjct: 2 KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQI------PDRTAY---- 51
Query: 138 CKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC 197
G G LI R LE+ GA I+MPC+ +H + +++ K +P + + E
Sbjct: 52 ILGKGEDPRPQLIWTAKR-----LEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEE 106
Query: 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236
AK++KE K + G+LA + +G Y+++
Sbjct: 107 TAKKVKELGFK--------KAGLLATTGTIVSGVYEKEF 137
>pdb|2DX7|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
Racemase Complex With Citric Acid
pdb|2DX7|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Ot3 Aspartate
Racemase Complex With Citric Acid
Length = 228
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 26/159 (16%)
Query: 81 NTVGIVGGASVDSTLNLLGKLVQLSGEENDF---PFLLCSDPLLNKELLSHDRSSFSSLN 137
T+GI+GG +T L ++V + + D ++ ++P + DR+++
Sbjct: 2 KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQI------PDRTAY---- 51
Query: 138 CKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC 197
G G LI R LE+ GA I+MP + +H + +++ K +P + + E
Sbjct: 52 ILGKGEDPRPQLIWTAKR-----LEECGADFIIMPANTAHAFVEDIRKAIKIPIISMIEE 106
Query: 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236
AK++KE K + G+LA + +G Y+++
Sbjct: 107 TAKKVKELGFK--------KAGLLATTGTIVSGVYEKEF 137
>pdb|3OJC|A Chain A, Crystal Structure Of A Putative AspGLU RACEMASE FROM
YERSINIA PESTIS
pdb|3OJC|B Chain B, Crystal Structure Of A Putative AspGLU RACEMASE FROM
YERSINIA PESTIS
pdb|3OJC|C Chain C, Crystal Structure Of A Putative AspGLU RACEMASE FROM
YERSINIA PESTIS
pdb|3OJC|D Chain D, Crystal Structure Of A Putative AspGLU RACEMASE FROM
YERSINIA PESTIS
Length = 231
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 83 VGIVGGASVDSTLNLLGKL-----VQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLN 137
+G++GG S +ST+ + QL G L S ++ L S D L
Sbjct: 5 LGLIGGXSWESTIPYYRXINQHVKAQLGG--------LHSAKII---LYSVDFHEIEQLQ 53
Query: 138 CKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC 197
KG D + L + L+ AGA IV+ + H D++ C +P LH+++
Sbjct: 54 AKG-----DWQTAAQLLSNAAISLKHAGAEVIVVCTNTXHKVADDIEAACGLPLLHIADA 108
Query: 198 VAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236
A ++K+ + +IG+L GFY+ +L
Sbjct: 109 TAVQIKQQGID--------KIGLLGTRYTXEQGFYRGRL 139
>pdb|2ZSK|A Chain A, Crystal Structure Of Ph1733, An Aspartate Racemase
Homologue, From Pyrococcus Horikoshii Ot3
pdb|2ZSK|B Chain B, Crystal Structure Of Ph1733, An Aspartate Racemase
Homologue, From Pyrococcus Horikoshii Ot3
Length = 226
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 21/156 (13%)
Query: 83 VGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGG 142
+GI+GG + +STL K +++S E+ + F EL+ + +F G
Sbjct: 4 IGIIGGTTPESTLYYYKKYIEISREKFEKYFY--------PELIIYS-INFKEFFQNPEG 54
Query: 143 VQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202
+ +++ + LE+AGA I + H+ D+V + +VP + + + VA+E+
Sbjct: 55 WEGRKKILINAAKA----LERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEI 110
Query: 203 KEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238
+ ++ ++ +L +TA FY + L+
Sbjct: 111 LKRGVR--------KVLLLGTKTTMTADFYIKTLEE 138
>pdb|1B73|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
pdb|1B74|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
Length = 254
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 160 FLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECVAKE-LKEANMKPLEAGSPLR 217
FL+ G IV+ C+ + + + + K +VP V E KE LK++ K +
Sbjct: 57 FLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKSRNK--------K 108
Query: 218 IGVLAKNAILTAGFYQEKLQH 238
IGV+ A + +G YQ KL+
Sbjct: 109 IGVIGTPATVKSGAYQRKLEE 129
>pdb|1ITQ|A Chain A, Human Renal Dipeptidase
pdb|1ITQ|B Chain B, Human Renal Dipeptidase
pdb|1ITU|A Chain A, Human Renal Dipeptidase Complexed With Cilastatin
pdb|1ITU|B Chain B, Human Renal Dipeptidase Complexed With Cilastatin
Length = 369
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 80 ANTVGIVGGASVDSTLNLLGKLVQL 104
A+ +G+ GG S+DS+L +L L QL
Sbjct: 119 ASLIGVEGGHSIDSSLGVLRALYQL 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,671,060
Number of Sequences: 62578
Number of extensions: 255284
Number of successful extensions: 521
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 9
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)