BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026201
         (241 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P32960|RACX_BACSU Probable amino-acid racemase OS=Bacillus subtilis (strain 168)
           GN=racX PE=2 SV=2
          Length = 227

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 37/164 (22%)

Query: 83  VGIVGGASVDSTLNLLGKLV----QLSGEEND--FPFLL---CSDPLLNKELLSHDRSSF 133
           +GI+ G    ST   + K++    +L G  ND  +P ++   C  P      + HD    
Sbjct: 2   IGILAGMGPKSTSPFIDKVIDYCQKLYGASNDIDYPHMMIYSCPTPFYADRPIDHDEMKK 61

Query: 134 SSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLH 193
           + ++   G V+L                EK G   I +PC+ +H++++E+ +  SVP LH
Sbjct: 62  AIID---GAVKL----------------EKTGVDFIALPCNTAHVYYEEIQQALSVPMLH 102

Query: 194 VSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237
           + E   KE+     K +         VL     + +  YQ+ L+
Sbjct: 103 IVEETIKEIPHPAKKAV---------VLGTEPTIQSAIYQKVLK 137


>sp|P03813|YGEA_ECOLI Uncharacterized protein YgeA OS=Escherichia coli (strain K12)
           GN=ygeA PE=1 SV=1
          Length = 230

 Score = 38.9 bits (89), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 8/79 (10%)

Query: 161 LEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGV 220
           L++AGA  IV+  +  H   D +   C++PFLH+++   + +  A M         R+ +
Sbjct: 71  LQRAGAEGIVLCTNTMHKVADAIESRCTLPFLHIADATGRAITGAGMT--------RVAL 122

Query: 221 LAKNAILTAGFYQEKLQHE 239
           L     +   FY+ +L  +
Sbjct: 123 LGTRYTMEQDFYRGRLTEQ 141


>sp|Q3AFA8|MURI_CARHZ Glutamate racemase OS=Carboxydothermus hydrogenoformans (strain
           Z-2901 / DSM 6008) GN=murI PE=3 SV=1
          Length = 265

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 14/83 (16%)

Query: 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLR 217
           R FL K G + +V  C+ S           ++P L     V   L E  ++PL    P +
Sbjct: 61  RFFL-KLGVKMVVFACNTSS--------AITLPILKERYPV---LMEGMLEPLRKNMPAK 108

Query: 218 --IGVLAKNAILTAGFYQEKLQH 238
             +GVLA  A + +G YQ+KL  
Sbjct: 109 AKVGVLATEATVKSGLYQKKLME 131


>sp|P56868|MURI_AQUPY Glutamate racemase OS=Aquifex pyrophilus GN=murI PE=1 SV=1
          Length = 254

 Score = 32.3 bits (72), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)

Query: 160 FLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECVAKE-LKEANMKPLEAGSPLR 217
           FL+  G   IV+ C+ +  +  + + K  +VP   V E   KE LK++  K        +
Sbjct: 57  FLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKKSRNK--------K 108

Query: 218 IGVLAKNAILTAGFYQEKLQH 238
           IGV+   A + +G YQ KL+ 
Sbjct: 109 IGVIGTPATVKSGAYQRKLEE 129


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,320,387
Number of Sequences: 539616
Number of extensions: 3418107
Number of successful extensions: 7931
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7926
Number of HSP's gapped (non-prelim): 11
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)