Query 026201
Match_columns 241
No_of_seqs 162 out of 1382
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1794 RacX Aspartate racemas 100.0 1.5E-39 3.2E-44 284.8 12.8 140 80-241 1-143 (230)
2 PRK10200 putative racemase; Pr 100.0 8.8E-38 1.9E-42 275.7 15.2 139 80-240 1-143 (230)
3 TIGR00035 asp_race aspartate r 100.0 2.3E-37 4.9E-42 271.6 15.5 140 80-241 1-143 (229)
4 TIGR00067 glut_race glutamate 99.9 9.9E-22 2.1E-26 175.7 15.6 127 83-240 1-130 (251)
5 PRK00865 glutamate racemase; P 99.8 2.7E-19 5.8E-24 160.5 15.8 129 80-240 5-135 (261)
6 COG0796 MurI Glutamate racemas 99.8 2.3E-18 5.1E-23 155.4 14.2 128 80-239 5-134 (269)
7 PF01177 Asp_Glu_race: Asp/Glu 99.7 2.1E-17 4.5E-22 141.3 8.5 132 86-241 1-134 (216)
8 PRK07475 hypothetical protein; 99.5 1.2E-13 2.6E-18 123.2 8.9 85 148-241 61-145 (245)
9 PRK00865 glutamate racemase; P 96.5 0.026 5.6E-07 50.8 10.5 108 79-204 109-218 (261)
10 COG4126 Hydantoin racemase [Am 96.5 0.02 4.3E-07 51.1 9.2 57 159-225 63-119 (230)
11 PF00532 Peripla_BP_1: Peripla 96.1 0.067 1.4E-06 48.1 10.6 119 81-241 2-150 (279)
12 PRK10481 hypothetical protein; 96.0 0.033 7.1E-07 49.7 8.1 76 144-230 69-144 (224)
13 TIGR00035 asp_race aspartate r 95.3 0.1 2.2E-06 45.9 8.5 109 80-205 117-225 (229)
14 COG3473 Maleate cis-trans isom 95.3 0.1 2.3E-06 46.4 8.3 84 149-241 51-144 (238)
15 TIGR00067 glut_race glutamate 95.2 0.22 4.7E-06 44.7 10.6 58 148-205 155-214 (251)
16 PF01177 Asp_Glu_race: Asp/Glu 94.6 0.13 2.8E-06 43.7 6.9 53 150-202 159-215 (216)
17 TIGR02990 ectoine_eutA ectoine 94.5 0.19 4E-06 45.1 8.1 79 154-241 59-146 (239)
18 TIGR00222 panB 3-methyl-2-oxob 93.9 0.14 3E-06 46.8 6.1 42 152-194 160-201 (263)
19 TIGR02317 prpB methylisocitrat 93.9 0.75 1.6E-05 42.4 10.9 105 80-208 113-224 (285)
20 TIGR02319 CPEP_Pphonmut carbox 93.7 0.85 1.8E-05 42.3 10.9 105 80-208 117-228 (294)
21 COG1609 PurR Transcriptional r 93.6 1.2 2.6E-05 41.3 11.8 122 79-241 57-206 (333)
22 cd06557 KPHMT-like Ketopantoat 93.5 0.18 3.9E-06 45.7 6.0 43 152-195 158-200 (254)
23 COG2048 HdrB Heterodisulfide r 93.4 0.35 7.5E-06 44.9 7.8 56 144-199 201-264 (293)
24 PLN02424 ketopantoate hydroxym 93.3 0.2 4.3E-06 47.2 6.1 43 151-194 181-223 (332)
25 PRK00311 panB 3-methyl-2-oxobu 93.1 0.22 4.9E-06 45.4 6.0 42 152-194 161-202 (264)
26 PRK10481 hypothetical protein; 93.0 0.22 4.7E-06 44.5 5.7 51 154-204 171-222 (224)
27 COG0796 MurI Glutamate racemas 92.4 0.56 1.2E-05 43.0 7.7 109 77-205 107-219 (269)
28 cd06298 PBP1_CcpA_like Ligand- 92.3 4.9 0.00011 34.2 13.1 73 159-240 49-147 (268)
29 PRK11303 DNA-binding transcrip 91.5 4.6 0.0001 36.0 12.4 76 157-241 109-210 (328)
30 cd06280 PBP1_LacI_like_4 Ligan 91.4 2.9 6.4E-05 35.8 10.8 73 158-240 48-144 (263)
31 PF07302 AroM: AroM protein; 91.4 0.56 1.2E-05 41.8 6.3 51 154-204 167-218 (221)
32 PRK11320 prpB 2-methylisocitra 91.4 2.9 6.4E-05 38.7 11.2 105 80-208 118-229 (292)
33 PRK10423 transcriptional repre 91.3 4.3 9.4E-05 36.1 12.1 76 158-241 105-205 (327)
34 PRK10014 DNA-binding transcrip 91.3 5.2 0.00011 35.9 12.6 75 158-241 113-213 (342)
35 TIGR02417 fruct_sucro_rep D-fr 91.0 5.4 0.00012 35.6 12.4 75 158-241 109-209 (327)
36 PRK07475 hypothetical protein; 91.0 0.74 1.6E-05 41.1 6.8 54 146-199 175-230 (245)
37 PRK14987 gluconate operon tran 90.8 6.2 0.00014 35.3 12.6 75 158-241 112-210 (331)
38 PF13344 Hydrolase_6: Haloacid 90.6 2.3 5E-05 32.7 8.4 74 154-241 19-100 (101)
39 COG4126 Hydantoin racemase [Am 90.5 0.56 1.2E-05 42.0 5.4 48 155-202 164-211 (230)
40 cd06273 PBP1_GntR_like_1 This 90.2 7.9 0.00017 33.0 12.3 74 158-240 48-147 (268)
41 cd06286 PBP1_CcpB_like Ligand- 90.0 4.5 9.7E-05 34.4 10.5 74 157-240 47-144 (260)
42 COG1794 RacX Aspartate racemas 89.4 2 4.3E-05 38.6 8.0 110 80-205 117-226 (230)
43 cd06289 PBP1_MalI_like Ligand- 89.2 11 0.00025 31.8 12.5 74 158-240 48-147 (268)
44 TIGR01481 ccpA catabolite cont 89.0 11 0.00024 33.6 12.7 121 80-241 59-208 (329)
45 cd06333 PBP1_ABC-type_HAAT_lik 88.9 11 0.00025 33.2 12.7 74 159-241 59-162 (312)
46 cd06326 PBP1_STKc_like Type I 88.5 17 0.00037 32.2 14.2 74 158-240 60-164 (336)
47 cd01575 PBP1_GntR Ligand-bindi 88.5 7.9 0.00017 32.8 11.0 75 157-240 47-146 (268)
48 cd06282 PBP1_GntR_like_2 Ligan 87.6 13 0.00028 31.4 11.7 74 158-240 48-147 (266)
49 cd06300 PBP1_ABC_sugar_binding 87.6 14 0.0003 31.7 12.0 76 158-240 53-155 (272)
50 PRK10727 DNA-binding transcrip 87.2 14 0.0003 33.3 12.3 74 158-241 108-207 (343)
51 TIGR03288 CoB_CoM_SS_B CoB--Co 87.0 2.1 4.6E-05 38.7 6.9 57 146-202 203-267 (290)
52 TIGR03151 enACPred_II putative 86.7 10 0.00022 35.0 11.3 74 157-239 121-212 (307)
53 cd06295 PBP1_CelR Ligand bindi 86.6 12 0.00025 32.3 11.0 73 159-240 58-155 (275)
54 cd06275 PBP1_PurR Ligand-bindi 86.3 20 0.00042 30.5 12.3 76 157-240 47-147 (269)
55 cd06317 PBP1_ABC_sugar_binding 86.3 20 0.00042 30.6 12.2 33 82-117 1-37 (275)
56 PRK10703 DNA-binding transcrip 86.0 25 0.00054 31.5 14.9 75 159-241 109-209 (341)
57 cd06356 PBP1_Amide_Urea_BP_lik 85.9 26 0.00057 31.6 13.6 74 160-241 62-161 (334)
58 cd06267 PBP1_LacI_sugar_bindin 85.6 20 0.00043 29.9 12.5 74 158-240 48-146 (264)
59 cd06556 ICL_KPHMT Members of t 85.5 1.8 4E-05 38.8 5.5 39 156-195 160-198 (240)
60 cd06305 PBP1_methylthioribose_ 84.9 23 0.00051 30.1 12.8 75 159-240 49-149 (273)
61 cd01542 PBP1_TreR_like Ligand- 84.9 12 0.00026 31.7 10.1 74 158-240 48-145 (259)
62 cd00377 ICL_PEPM Members of th 84.9 6.6 0.00014 35.0 8.8 107 80-208 109-221 (243)
63 PF07302 AroM: AroM protein; 84.7 2.4 5.3E-05 37.8 5.8 33 144-176 66-98 (221)
64 cd06283 PBP1_RegR_EndR_KdgR_li 84.6 22 0.00047 30.1 11.6 74 158-240 48-147 (267)
65 PRK10936 TMAO reductase system 84.5 22 0.00048 32.5 12.3 84 80-193 46-133 (343)
66 cd01545 PBP1_SalR Ligand-bindi 84.2 23 0.00049 30.1 11.6 74 158-240 49-148 (270)
67 cd06270 PBP1_GalS_like Ligand 83.7 27 0.00058 29.8 12.6 75 157-240 47-146 (268)
68 PRK10355 xylF D-xylose transpo 83.4 24 0.00051 32.3 12.0 83 79-194 24-112 (330)
69 cd06297 PBP1_LacI_like_12 Liga 83.2 29 0.00063 29.9 12.0 72 160-241 50-150 (269)
70 cd06277 PBP1_LacI_like_1 Ligan 82.8 14 0.00031 31.5 9.9 75 158-241 51-149 (268)
71 cd06278 PBP1_LacI_like_2 Ligan 82.8 26 0.00057 29.5 11.4 74 158-240 47-145 (266)
72 PF13714 PEP_mutase: Phosphoen 82.6 8.5 0.00018 34.5 8.5 99 88-208 113-214 (238)
73 cd06336 PBP1_ABC_ligand_bindin 82.2 21 0.00045 32.4 11.1 26 215-240 138-166 (347)
74 TIGR02990 ectoine_eutA ectoine 82.2 3.1 6.7E-05 37.3 5.6 57 145-205 165-223 (239)
75 cd06296 PBP1_CatR_like Ligand- 82.2 19 0.0004 30.7 10.3 36 157-193 47-83 (270)
76 TIGR02405 trehalos_R_Ecol treh 81.9 33 0.00072 30.4 12.1 38 196-241 161-204 (311)
77 COG0821 gcpE 1-hydroxy-2-methy 81.6 3.1 6.8E-05 39.5 5.5 36 157-192 41-78 (361)
78 cd01391 Periplasmic_Binding_Pr 81.2 28 0.00061 28.4 13.7 74 158-240 51-153 (269)
79 cd06281 PBP1_LacI_like_5 Ligan 80.9 35 0.00075 29.2 13.9 74 158-240 48-146 (269)
80 cd06325 PBP1_ABC_uncharacteriz 80.8 35 0.00076 29.2 13.6 36 157-194 52-87 (281)
81 PRK09492 treR trehalose repres 80.7 31 0.00068 30.4 11.5 74 158-241 111-207 (315)
82 cd06299 PBP1_LacI_like_13 Liga 80.3 35 0.00076 28.9 12.6 74 158-240 48-146 (265)
83 TIGR03669 urea_ABC_arch urea A 79.9 53 0.0011 30.7 14.1 74 160-241 63-162 (374)
84 cd06288 PBP1_sucrose_transcrip 79.5 34 0.00073 29.0 11.0 74 158-240 49-146 (269)
85 cd06312 PBP1_ABC_sugar_binding 79.0 41 0.00088 28.9 11.6 37 157-194 49-88 (271)
86 cd06360 PBP1_alkylbenzenes_lik 78.8 47 0.001 29.4 12.2 75 158-241 57-163 (336)
87 cd01541 PBP1_AraR Ligand-bindi 78.3 42 0.00092 28.7 11.9 75 157-240 47-150 (273)
88 PRK10200 putative racemase; Pr 78.1 4.6 0.0001 35.7 5.2 54 149-204 173-226 (230)
89 cd06353 PBP1_BmpA_Med_like Per 76.9 14 0.0003 32.9 8.0 90 76-194 116-206 (258)
90 TIGR01037 pyrD_sub1_fam dihydr 76.8 27 0.00058 31.6 10.0 68 155-232 172-273 (300)
91 PRK09526 lacI lac repressor; R 76.7 26 0.00057 31.3 9.9 76 158-241 113-212 (342)
92 cd06346 PBP1_ABC_ligand_bindin 76.5 55 0.0012 29.1 12.5 76 158-241 59-166 (312)
93 cd06366 PBP1_GABAb_receptor Li 76.4 45 0.00097 30.0 11.4 75 159-241 60-164 (350)
94 cd06279 PBP1_LacI_like_3 Ligan 75.7 24 0.00052 30.7 9.1 57 159-224 50-125 (283)
95 cd01536 PBP1_ABC_sugar_binding 75.4 47 0.001 27.8 12.9 24 216-239 122-150 (267)
96 COG0041 PurE Phosphoribosylcar 75.2 21 0.00045 30.5 8.1 84 81-196 3-88 (162)
97 cd06284 PBP1_LacI_like_6 Ligan 75.1 43 0.00093 28.2 10.3 74 157-240 47-145 (267)
98 PF02548 Pantoate_transf: Keto 75.1 7.8 0.00017 35.5 5.9 48 146-195 157-204 (261)
99 cd06320 PBP1_allose_binding Pe 74.9 33 0.00071 29.4 9.6 77 157-240 49-153 (275)
100 PRK00366 ispG 4-hydroxy-3-meth 74.7 6.7 0.00015 37.5 5.6 36 157-192 47-84 (360)
101 cd06331 PBP1_AmiC_like Type I 74.5 64 0.0014 28.8 12.9 77 157-241 58-161 (333)
102 PRK06259 succinate dehydrogena 74.2 10 0.00022 36.8 7.0 58 143-200 308-365 (486)
103 TIGR00612 ispG_gcpE 1-hydroxy- 73.9 7.4 0.00016 37.0 5.6 36 157-192 39-76 (346)
104 cd06285 PBP1_LacI_like_7 Ligan 73.7 55 0.0012 27.8 14.2 75 157-240 47-144 (265)
105 COG1911 RPL30 Ribosomal protei 73.7 8.3 0.00018 30.4 4.9 62 155-223 25-89 (100)
106 TIGR02320 PEP_mutase phosphoen 73.2 51 0.0011 30.4 10.9 106 80-208 117-235 (285)
107 cd06339 PBP1_YraM_LppC_lipopro 73.2 73 0.0016 28.9 13.8 75 158-240 52-152 (336)
108 TIGR03407 urea_ABC_UrtA urea A 72.9 76 0.0017 29.0 13.9 26 216-241 135-163 (359)
109 cd06341 PBP1_ABC_ligand_bindin 72.6 24 0.00053 31.5 8.6 76 158-241 59-162 (341)
110 PRK00421 murC UDP-N-acetylmura 71.7 36 0.00078 32.7 10.0 65 165-240 66-133 (461)
111 cd06314 PBP1_tmGBP Periplasmic 71.4 65 0.0014 27.6 12.5 35 158-194 48-85 (271)
112 cd06323 PBP1_ribose_binding Pe 71.3 62 0.0013 27.3 12.3 14 159-172 49-62 (268)
113 cd06268 PBP1_ABC_transporter_L 71.1 43 0.00092 28.2 9.4 76 157-240 58-163 (298)
114 TIGR01162 purE phosphoribosyla 71.0 35 0.00076 29.0 8.5 117 83-234 1-123 (156)
115 cd01537 PBP1_Repressors_Sugar_ 70.8 59 0.0013 26.9 14.4 74 158-240 48-148 (264)
116 TIGR01918 various_sel_PB selen 70.3 10 0.00022 37.1 5.7 48 148-196 319-372 (431)
117 PF13911 AhpC-TSA_2: AhpC/TSA 70.2 8.1 0.00017 29.7 4.3 50 156-208 4-55 (115)
118 TIGR03379 glycerol3P_GlpC glyc 70.0 12 0.00025 35.3 6.1 54 146-202 343-396 (397)
119 TIGR01917 gly_red_sel_B glycin 69.8 10 0.00022 37.1 5.6 47 148-195 319-371 (431)
120 cd06290 PBP1_LacI_like_9 Ligan 69.8 68 0.0015 27.2 14.5 74 157-240 47-145 (265)
121 PRK01710 murD UDP-N-acetylmura 69.7 30 0.00065 33.3 9.0 65 164-240 76-143 (458)
122 PF01380 SIS: SIS domain SIS d 69.0 49 0.0011 25.2 8.8 28 155-182 70-97 (131)
123 TIGR01457 HAD-SF-IIA-hyp2 HAD- 68.8 47 0.001 29.3 9.4 65 155-226 23-94 (249)
124 cd06310 PBP1_ABC_sugar_binding 68.5 74 0.0016 27.1 12.7 32 82-116 1-35 (273)
125 cd06329 PBP1_SBP_like_3 Peripl 68.5 77 0.0017 28.6 11.0 36 159-194 60-103 (342)
126 PRK09701 D-allose transporter 68.4 88 0.0019 27.9 12.6 124 80-240 24-186 (311)
127 cd06319 PBP1_ABC_sugar_binding 68.0 76 0.0016 27.0 12.4 26 216-241 126-156 (277)
128 PRK07259 dihydroorotate dehydr 67.7 58 0.0013 29.5 10.0 42 154-196 171-242 (301)
129 cd06345 PBP1_ABC_ligand_bindin 67.4 94 0.002 27.9 12.4 35 159-193 60-96 (344)
130 cd04509 PBP1_ABC_transporter_G 67.2 58 0.0013 27.4 9.4 75 158-240 59-164 (299)
131 PF06506 PrpR_N: Propionate ca 66.8 20 0.00044 30.0 6.4 63 156-228 24-90 (176)
132 cd06321 PBP1_ABC_sugar_binding 66.4 82 0.0018 26.8 10.5 73 158-239 50-149 (271)
133 cd01538 PBP1_ABC_xylose_bindin 66.4 90 0.0019 27.2 12.5 36 158-194 48-86 (288)
134 PRK08444 hypothetical protein; 66.3 10 0.00022 35.8 4.9 84 80-187 97-181 (353)
135 PF13458 Peripla_BP_6: Peripla 65.7 96 0.0021 27.4 11.2 77 157-241 60-164 (343)
136 PRK13523 NADPH dehydrogenase N 65.6 53 0.0011 30.8 9.5 86 86-196 184-283 (337)
137 PRK02006 murD UDP-N-acetylmura 65.6 94 0.002 30.2 11.6 72 165-240 69-147 (498)
138 PRK07709 fructose-bisphosphate 65.4 16 0.00036 33.7 5.9 54 155-208 159-228 (285)
139 cd06271 PBP1_AglR_RafR_like Li 65.4 66 0.0014 27.1 9.4 72 160-240 54-150 (268)
140 PRK08610 fructose-bisphosphate 64.9 14 0.00031 34.1 5.5 54 155-208 159-228 (286)
141 cd04740 DHOD_1B_like Dihydroor 64.8 86 0.0019 28.2 10.5 42 154-196 168-239 (296)
142 COG0413 PanB Ketopantoate hydr 64.0 18 0.00038 33.3 5.7 45 150-195 159-203 (268)
143 PRK02705 murD UDP-N-acetylmura 63.7 62 0.0013 30.8 9.8 66 164-240 67-135 (459)
144 PF02601 Exonuc_VII_L: Exonucl 63.6 38 0.00082 31.0 8.0 89 79-195 13-114 (319)
145 PRK03369 murD UDP-N-acetylmura 63.5 89 0.0019 30.5 11.0 71 165-240 70-143 (488)
146 TIGR01859 fruc_bis_ald_ fructo 63.4 28 0.0006 31.9 7.0 54 155-208 156-225 (282)
147 COG2513 PrpB PEP phosphonomuta 63.4 43 0.00094 31.2 8.2 105 80-208 118-229 (289)
148 PRK12857 fructose-1,6-bisphosp 63.1 11 0.00024 34.7 4.4 54 155-208 158-227 (284)
149 cd06291 PBP1_Qymf_like Ligand 62.9 94 0.002 26.3 13.4 72 158-240 48-143 (265)
150 PRK12738 kbaY tagatose-bisphos 62.4 22 0.00047 32.9 6.1 54 155-208 158-227 (286)
151 cd06315 PBP1_ABC_sugar_binding 62.2 1.1E+02 0.0023 26.6 13.5 36 157-193 48-86 (280)
152 PRK00994 F420-dependent methyl 61.0 81 0.0018 29.0 9.3 99 80-206 2-109 (277)
153 COG1587 HemD Uroporphyrinogen- 61.0 38 0.00083 29.9 7.3 79 159-241 46-147 (248)
154 PRK12737 gatY tagatose-bisphos 60.9 21 0.00047 32.9 5.8 54 155-208 158-227 (284)
155 cd02809 alpha_hydroxyacid_oxid 60.7 42 0.00092 30.6 7.7 52 157-208 134-195 (299)
156 PRK00856 pyrB aspartate carbam 60.6 12 0.00026 34.7 4.2 73 153-230 89-174 (305)
157 cd06334 PBP1_ABC_ligand_bindin 60.2 82 0.0018 28.9 9.6 27 215-241 140-169 (351)
158 cd06322 PBP1_ABC_sugar_binding 60.2 1.1E+02 0.0023 26.0 12.7 75 158-241 48-152 (267)
159 TIGR01858 tag_bisphos_ald clas 60.1 22 0.00047 32.8 5.7 54 155-208 156-225 (282)
160 PF02602 HEM4: Uroporphyrinoge 59.4 18 0.00039 30.8 4.8 83 156-240 33-140 (231)
161 PF02729 OTCace_N: Aspartate/o 59.0 14 0.00031 30.4 3.9 41 154-196 84-124 (142)
162 PF08821 CGGC: CGGC domain; I 59.0 23 0.00049 28.0 4.9 24 154-177 54-77 (107)
163 cd06293 PBP1_LacI_like_11 Liga 58.9 1.1E+02 0.0025 25.9 14.0 75 157-240 47-146 (269)
164 PRK09195 gatY tagatose-bisphos 58.7 14 0.00031 34.0 4.3 54 155-208 158-227 (284)
165 PRK09234 fbiC FO synthase; Rev 58.2 34 0.00075 36.2 7.4 104 80-208 574-681 (843)
166 PF04551 GcpE: GcpE protein; 58.0 17 0.00037 34.8 4.7 36 157-192 36-78 (359)
167 cd06313 PBP1_ABC_sugar_binding 57.8 1.2E+02 0.0027 26.1 12.3 17 158-174 48-64 (272)
168 PF09370 TIM-br_sig_trns: TIM- 57.8 17 0.00036 33.5 4.5 79 158-241 28-109 (268)
169 PRK10401 DNA-binding transcrip 57.7 1.4E+02 0.0031 26.7 14.8 37 197-241 166-207 (346)
170 PRK07998 gatY putative fructos 57.6 22 0.00048 32.8 5.3 54 155-208 156-224 (283)
171 TIGR03863 PQQ_ABC_bind ABC tra 57.5 93 0.002 28.9 9.5 38 157-194 51-89 (347)
172 PF00731 AIRC: AIR carboxylase 57.3 22 0.00048 29.9 4.8 72 156-234 46-125 (150)
173 PRK00115 hemE uroporphyrinogen 57.3 76 0.0017 29.4 8.9 43 150-194 222-266 (346)
174 PRK07084 fructose-bisphosphate 56.7 26 0.00057 33.0 5.7 26 155-180 167-192 (321)
175 PRK15404 leucine ABC transport 56.6 1.7E+02 0.0036 27.1 13.4 26 216-241 162-190 (369)
176 PRK11168 glpC sn-glycerol-3-ph 56.5 30 0.00065 32.4 6.1 46 154-202 349-394 (396)
177 cd06287 PBP1_LacI_like_8 Ligan 56.5 50 0.0011 28.8 7.3 37 197-241 108-149 (269)
178 cd06357 PBP1_AmiC Periplasmic 56.5 1.6E+02 0.0035 26.9 13.6 73 161-241 63-161 (360)
179 cd06306 PBP1_TorT-like TorT-li 56.4 1.3E+02 0.0028 25.8 13.1 80 157-240 49-155 (268)
180 TIGR03700 mena_SCO4494 putativ 56.4 41 0.0009 31.4 7.0 105 80-208 96-203 (351)
181 PTZ00325 malate dehydrogenase; 56.3 35 0.00075 31.9 6.4 23 78-100 6-28 (321)
182 PRK09590 celB cellobiose phosp 56.2 89 0.0019 24.4 7.8 79 80-194 1-81 (104)
183 PRK11274 glcF glycolate oxidas 56.1 30 0.00065 32.6 6.1 49 151-202 357-405 (407)
184 PRK10550 tRNA-dihydrouridine s 55.8 22 0.00048 33.0 5.1 43 155-197 151-203 (312)
185 cd06272 PBP1_hexuronate_repres 55.0 1.1E+02 0.0024 25.9 9.0 73 159-240 45-141 (261)
186 TIGR00423 radical SAM domain p 55.0 63 0.0014 29.5 7.9 103 80-208 53-160 (309)
187 COG1744 Med Uncharacterized AB 54.9 47 0.001 31.3 7.1 107 43-179 119-234 (345)
188 PRK06259 succinate dehydrogena 54.8 32 0.0007 33.4 6.2 55 147-201 429-485 (486)
189 PRK01438 murD UDP-N-acetylmura 54.6 1.8E+02 0.0039 27.9 11.3 69 164-240 77-148 (480)
190 PRK14573 bifunctional D-alanyl 54.3 91 0.002 32.5 9.7 65 165-240 63-130 (809)
191 PRK00286 xseA exodeoxyribonucl 54.2 45 0.00099 32.0 7.1 88 80-195 135-231 (438)
192 cd01543 PBP1_XylR Ligand-bindi 54.0 51 0.0011 28.2 6.8 72 159-240 44-138 (265)
193 TIGR00007 phosphoribosylformim 53.9 1.2E+02 0.0026 26.1 9.1 75 157-240 33-119 (230)
194 PRK10444 UMP phosphatase; Prov 53.6 1.2E+02 0.0026 26.9 9.3 65 154-226 22-93 (248)
195 KOG2949 Ketopantoate hydroxyme 53.0 26 0.00056 32.1 4.7 137 28-195 86-227 (306)
196 TIGR00167 cbbA ketose-bisphosp 52.8 28 0.00062 32.1 5.2 53 156-208 162-231 (288)
197 cd06337 PBP1_ABC_ligand_bindin 52.2 1E+02 0.0022 28.2 8.8 37 158-194 61-99 (357)
198 cd02810 DHOD_DHPD_FMN Dihydroo 51.8 51 0.0011 29.4 6.7 19 154-172 178-196 (289)
199 PRK06806 fructose-bisphosphate 51.8 60 0.0013 29.8 7.1 58 156-221 157-230 (281)
200 cd06578 HemD Uroporphyrinogen- 51.6 1.2E+02 0.0025 25.4 8.5 74 165-240 49-145 (239)
201 PRK10528 multifunctional acyl- 51.3 1.1E+02 0.0024 25.5 8.3 89 88-195 50-149 (191)
202 PRK07360 FO synthase subunit 2 51.2 63 0.0014 30.5 7.4 104 80-208 108-216 (371)
203 TIGR01452 PGP_euk phosphoglyco 51.1 1.2E+02 0.0027 27.0 9.0 64 155-225 24-95 (279)
204 cd06301 PBP1_rhizopine_binding 50.9 1.5E+02 0.0033 25.1 14.0 17 158-174 49-65 (272)
205 PRK08811 uroporphyrinogen-III 50.7 1E+02 0.0023 27.7 8.5 89 151-241 27-162 (266)
206 cd06332 PBP1_aromatic_compound 50.7 97 0.0021 27.2 8.2 37 157-194 56-95 (333)
207 TIGR01769 GGGP geranylgeranylg 50.7 29 0.00064 30.5 4.7 41 152-192 11-57 (205)
208 cd06274 PBP1_FruR Ligand bindi 50.4 1.6E+02 0.0034 25.0 11.9 75 157-240 47-146 (264)
209 cd06309 PBP1_YtfQ_like Peripla 50.3 1.6E+02 0.0035 25.1 13.7 76 157-239 47-153 (273)
210 PRK05928 hemD uroporphyrinogen 50.2 1.1E+02 0.0024 25.9 8.3 79 161-241 48-149 (249)
211 PRK08185 hypothetical protein; 50.1 38 0.00083 31.2 5.6 54 155-208 152-223 (283)
212 COG0552 FtsY Signal recognitio 49.7 48 0.001 31.6 6.3 68 154-230 156-236 (340)
213 cd06294 PBP1_ycjW_transcriptio 49.5 1.3E+02 0.0028 25.3 8.6 72 160-240 55-152 (270)
214 PRK13602 putative ribosomal pr 49.3 73 0.0016 23.7 6.1 48 156-205 18-68 (82)
215 PLN02645 phosphoglycolate phos 49.3 1.7E+02 0.0037 26.7 9.8 67 154-226 49-123 (311)
216 TIGR00655 PurU formyltetrahydr 49.2 1.6E+02 0.0034 27.0 9.5 102 79-194 83-188 (280)
217 cd01822 Lysophospholipase_L1_l 49.1 1.3E+02 0.0029 23.8 8.9 66 88-172 43-108 (177)
218 COG1703 ArgK Putative periplas 49.0 75 0.0016 30.0 7.3 118 80-202 51-180 (323)
219 cd06347 PBP1_ABC_ligand_bindin 48.2 1.9E+02 0.0041 25.3 12.0 27 215-241 135-165 (334)
220 cd00947 TBP_aldolase_IIB Tagat 48.0 41 0.00089 30.9 5.4 54 155-208 151-221 (276)
221 COG0540 PyrB Aspartate carbamo 48.0 30 0.00064 32.6 4.5 43 154-197 91-134 (316)
222 COG1570 XseA Exonuclease VII, 47.9 62 0.0013 31.9 6.9 88 80-195 135-232 (440)
223 PF08659 KR: KR domain; Inter 47.9 1.2E+02 0.0025 25.2 7.8 64 82-178 2-65 (181)
224 PRK05926 hypothetical protein; 47.6 88 0.0019 29.8 7.8 104 80-208 115-222 (370)
225 PRK00278 trpC indole-3-glycero 47.5 1.5E+02 0.0033 26.6 9.0 61 156-224 74-143 (260)
226 cd00951 KDGDH 5-dehydro-4-deox 46.5 88 0.0019 28.4 7.4 49 156-204 85-148 (289)
227 PRK06801 hypothetical protein; 46.4 1.1E+02 0.0023 28.3 7.9 54 155-208 159-228 (286)
228 PRK05835 fructose-bisphosphate 46.1 24 0.00052 33.0 3.6 38 155-192 158-208 (307)
229 cd06276 PBP1_FucR_like Ligand- 46.0 1.6E+02 0.0035 25.2 8.7 36 198-241 106-147 (247)
230 TIGR01460 HAD-SF-IIA Haloacid 45.9 1.1E+02 0.0025 26.6 7.8 65 155-226 20-92 (236)
231 TIGR00262 trpA tryptophan synt 45.9 1.9E+02 0.0041 26.0 9.3 14 109-122 11-24 (256)
232 cd04733 OYE_like_2_FMN Old yel 45.8 98 0.0021 28.7 7.7 87 87-196 192-300 (338)
233 cd06311 PBP1_ABC_sugar_binding 45.5 1.9E+02 0.0042 24.6 10.0 36 157-193 52-90 (274)
234 cd00408 DHDPS-like Dihydrodipi 45.4 1.1E+02 0.0023 27.3 7.6 36 157-192 84-127 (281)
235 cd01821 Rhamnogalacturan_acety 45.1 1.1E+02 0.0023 25.3 7.2 59 146-204 88-162 (198)
236 PF03437 BtpA: BtpA family; I 45.0 58 0.0013 29.6 5.9 48 144-191 21-83 (254)
237 PRK10653 D-ribose transporter 45.0 2.1E+02 0.0046 24.9 12.1 35 80-117 26-63 (295)
238 PF00582 Usp: Universal stress 44.9 47 0.001 24.4 4.6 36 157-192 94-137 (140)
239 PRK15063 isocitrate lyase; Pro 44.9 54 0.0012 32.2 5.9 106 80-187 187-300 (428)
240 KOG2882 p-Nitrophenyl phosphat 44.9 80 0.0017 29.7 6.8 75 154-241 43-126 (306)
241 PRK07565 dihydroorotate dehydr 44.8 1.2E+02 0.0026 28.1 8.1 53 156-208 118-192 (334)
242 cd05009 SIS_GlmS_GlmD_2 SIS (S 44.7 94 0.002 24.3 6.5 83 75-176 8-100 (153)
243 PF02602 HEM4: Uroporphyrinoge 44.6 33 0.00072 29.1 4.1 52 157-208 160-216 (231)
244 TIGR02351 thiH thiazole biosyn 44.6 1.4E+02 0.003 28.2 8.6 112 80-230 120-233 (366)
245 COG1927 Mtd Coenzyme F420-depe 44.6 1.8E+02 0.0039 26.4 8.6 91 81-198 3-97 (277)
246 PF01993 MTD: methylene-5,6,7, 44.5 49 0.0011 30.4 5.2 97 82-206 3-108 (276)
247 PRK06683 hypothetical protein; 44.2 96 0.0021 23.2 6.0 48 157-206 19-69 (82)
248 PF08901 DUF1847: Protein of u 44.0 40 0.00087 28.7 4.3 42 192-241 40-82 (157)
249 PF07476 MAAL_C: Methylasparta 43.9 86 0.0019 28.5 6.6 95 82-202 79-182 (248)
250 COG0647 NagD Predicted sugar p 43.8 1.5E+02 0.0032 27.2 8.4 75 154-241 29-111 (269)
251 cd00408 DHDPS-like Dihydrodipi 43.4 55 0.0012 29.1 5.5 35 141-179 11-45 (281)
252 COG0788 PurU Formyltetrahydrof 43.3 1.1E+02 0.0023 28.6 7.2 104 80-195 90-195 (287)
253 PRK01390 murD UDP-N-acetylmura 43.3 2.7E+02 0.0058 26.6 10.5 70 164-240 64-140 (460)
254 PRK11557 putative DNA-binding 43.2 1.6E+02 0.0035 26.0 8.5 95 73-181 121-218 (278)
255 cd06344 PBP1_ABC_ligand_bindin 43.2 2.4E+02 0.0053 25.1 11.9 23 216-238 135-161 (332)
256 cd06358 PBP1_NHase Type I peri 43.0 2.4E+02 0.0053 25.1 14.2 75 158-241 59-161 (333)
257 PRK13011 formyltetrahydrofolat 43.0 1.5E+02 0.0032 27.2 8.3 101 80-194 89-193 (286)
258 TIGR03249 KdgD 5-dehydro-4-deo 42.8 2.6E+02 0.0056 25.3 9.9 49 156-204 90-153 (296)
259 COG3367 Uncharacterized conser 42.7 63 0.0014 30.8 5.8 39 165-203 287-332 (339)
260 PLN02545 3-hydroxybutyryl-CoA 42.6 2.4E+02 0.0052 25.2 9.6 19 77-96 1-19 (295)
261 cd00945 Aldolase_Class_I Class 42.6 53 0.0011 26.8 4.9 37 156-192 69-117 (201)
262 COG1737 RpiR Transcriptional r 42.4 1.6E+02 0.0036 26.5 8.5 94 72-179 122-218 (281)
263 PF02776 TPP_enzyme_N: Thiamin 42.4 80 0.0017 26.0 6.0 44 157-200 7-51 (172)
264 PRK03620 5-dehydro-4-deoxygluc 41.9 1.1E+02 0.0024 28.0 7.3 48 156-203 92-154 (303)
265 PRK05583 ribosomal protein L7A 41.7 1.7E+02 0.0036 22.9 7.3 45 159-205 27-74 (104)
266 cd01544 PBP1_GalR Ligand-bindi 41.6 1.7E+02 0.0036 25.1 8.1 36 197-240 102-147 (270)
267 TIGR03288 CoB_CoM_SS_B CoB--Co 41.6 76 0.0017 28.6 6.2 57 145-202 50-129 (290)
268 PRK10605 N-ethylmaleimide redu 41.4 1.3E+02 0.0029 28.4 7.9 91 86-196 201-300 (362)
269 TIGR00237 xseA exodeoxyribonuc 41.3 1.1E+02 0.0023 29.8 7.4 89 79-195 128-226 (432)
270 PRK04196 V-type ATP synthase s 41.3 2E+02 0.0042 28.5 9.3 113 79-235 142-259 (460)
271 TIGR03551 F420_cofH 7,8-dideme 41.0 1.2E+02 0.0027 28.0 7.6 103 80-208 87-194 (343)
272 cd06302 PBP1_LsrB_Quorum_Sensi 41.0 1.9E+02 0.0042 25.3 8.6 32 82-116 1-35 (298)
273 cd04501 SGNH_hydrolase_like_4 40.9 1.9E+02 0.0042 23.3 9.7 66 88-172 38-103 (183)
274 PRK13191 putative peroxiredoxi 40.8 1.4E+02 0.003 26.0 7.5 56 151-206 53-113 (215)
275 PRK15424 propionate catabolism 40.8 97 0.0021 31.2 7.2 60 159-228 58-120 (538)
276 PRK00779 ornithine carbamoyltr 40.8 38 0.00082 31.4 4.1 70 154-229 88-167 (304)
277 cd06342 PBP1_ABC_LIVBP_like Ty 40.6 2E+02 0.0043 25.3 8.6 36 159-194 60-96 (334)
278 cd01838 Isoamyl_acetate_hydrol 40.6 1.9E+02 0.0042 23.2 9.4 73 88-173 39-115 (199)
279 cd04732 HisA HisA. Phosphorib 40.6 2.3E+02 0.005 24.2 8.9 75 157-240 34-120 (234)
280 cd06355 PBP1_FmdD_like Peripla 40.2 2.8E+02 0.0062 25.1 14.0 76 159-241 60-162 (348)
281 cd02810 DHOD_DHPD_FMN Dihydroo 39.9 1.4E+02 0.0029 26.7 7.5 54 155-208 114-191 (289)
282 cd06338 PBP1_ABC_ligand_bindin 39.8 2.7E+02 0.0059 24.7 12.5 35 160-194 65-101 (345)
283 PF02754 CCG: Cysteine-rich do 39.8 56 0.0012 22.7 4.1 30 149-178 53-82 (85)
284 TIGR01521 FruBisAldo_II_B fruc 39.2 32 0.0007 32.8 3.4 38 155-192 174-228 (347)
285 PRK11815 tRNA-dihydrouridine s 39.2 61 0.0013 30.2 5.2 44 154-197 153-214 (333)
286 cd06354 PBP1_BmpA_PnrA_like Pe 38.6 1.8E+02 0.004 25.1 7.9 36 158-193 50-86 (265)
287 PF01207 Dus: Dihydrouridine s 38.3 39 0.00085 31.1 3.8 43 156-198 142-193 (309)
288 KOG0781 Signal recognition par 38.2 65 0.0014 32.5 5.4 67 154-229 395-480 (587)
289 PRK10339 DNA-binding transcrip 38.1 1.9E+02 0.0041 25.7 8.2 36 197-240 164-204 (327)
290 PTZ00314 inosine-5'-monophosph 37.9 68 0.0015 31.8 5.6 54 155-208 243-305 (495)
291 PRK09196 fructose-1,6-bisphosp 37.8 59 0.0013 31.0 4.9 27 154-180 175-201 (347)
292 cd00958 DhnA Class I fructose- 37.6 1.7E+02 0.0037 25.2 7.6 36 158-194 149-185 (235)
293 TIGR00670 asp_carb_tr aspartat 37.4 47 0.001 30.7 4.2 64 154-223 85-158 (301)
294 cd00945 Aldolase_Class_I Class 37.4 1.8E+02 0.0038 23.6 7.3 20 154-173 15-34 (201)
295 PRK04523 N-acetylornithine car 37.3 51 0.0011 31.0 4.4 43 153-196 94-145 (335)
296 PF14871 GHL6: Hypothetical gl 37.3 58 0.0013 26.5 4.2 51 157-208 5-59 (132)
297 PRK09240 thiH thiamine biosynt 37.2 2E+02 0.0043 27.2 8.4 109 80-228 121-232 (371)
298 PRK04284 ornithine carbamoyltr 37.1 50 0.0011 31.1 4.3 72 154-231 90-173 (332)
299 PRK09177 xanthine-guanine phos 37.1 83 0.0018 26.1 5.2 50 145-194 10-60 (156)
300 cd02803 OYE_like_FMN_family Ol 37.1 1E+02 0.0022 28.0 6.2 42 155-196 231-289 (327)
301 PRK11041 DNA-binding transcrip 37.0 2.8E+02 0.0061 24.1 13.4 36 197-240 142-182 (309)
302 PRK05928 hemD uroporphyrinogen 37.0 78 0.0017 26.8 5.2 48 161-208 173-227 (249)
303 TIGR03127 RuMP_HxlB 6-phospho 37.0 2.3E+02 0.0051 23.2 8.0 92 73-181 23-115 (179)
304 TIGR01041 ATP_syn_B_arch ATP s 36.9 2.9E+02 0.0063 27.3 9.7 113 79-235 140-257 (458)
305 PRK05927 hypothetical protein; 36.9 42 0.00092 31.7 3.8 29 80-108 93-121 (350)
306 cd04734 OYE_like_3_FMN Old yel 36.5 1.8E+02 0.0038 27.2 7.9 86 87-196 184-293 (343)
307 PRK07239 bifunctional uroporph 36.4 50 0.0011 30.9 4.2 60 159-228 195-266 (381)
308 PRK00694 4-hydroxy-3-methylbut 36.1 71 0.0015 32.6 5.4 37 157-193 50-93 (606)
309 PRK13010 purU formyltetrahydro 35.8 2E+02 0.0044 26.4 8.1 101 80-194 93-197 (289)
310 PRK11199 tyrA bifunctional cho 35.7 1.9E+02 0.004 27.4 8.0 16 80-95 98-113 (374)
311 TIGR02329 propionate_PrpR prop 35.5 1.3E+02 0.0029 30.0 7.3 60 159-228 48-110 (526)
312 TIGR03572 WbuZ glycosyl amidat 35.2 2E+02 0.0043 24.8 7.6 40 156-195 157-204 (232)
313 KOG3406 40S ribosomal protein 35.2 78 0.0017 26.2 4.6 49 149-197 34-86 (134)
314 TIGR00736 nifR3_rel_arch TIM-b 35.1 74 0.0016 28.4 4.9 42 155-196 151-199 (231)
315 PRK08666 5'-methylthioadenosin 35.1 22 0.00047 32.0 1.5 14 80-93 1-14 (261)
316 PF03308 ArgK: ArgK protein; 35.0 1.9E+02 0.004 26.7 7.5 90 80-175 29-131 (266)
317 PF02574 S-methyl_trans: Homoc 34.9 59 0.0013 29.5 4.4 49 143-191 126-178 (305)
318 cd06292 PBP1_LacI_like_10 Liga 34.9 2.8E+02 0.0061 23.4 14.1 75 157-240 47-152 (273)
319 KOG0854 Alkyl hydroperoxide re 34.9 1E+02 0.0022 27.3 5.4 33 152-184 53-88 (224)
320 PRK14805 ornithine carbamoyltr 34.9 54 0.0012 30.4 4.1 64 154-223 83-155 (302)
321 cd06380 PBP1_iGluR_AMPA N-term 34.8 2.7E+02 0.0058 25.4 8.8 40 154-194 52-92 (382)
322 cd07035 TPP_PYR_POX_like Pyrim 34.6 52 0.0011 26.3 3.6 41 158-199 4-45 (155)
323 PLN02342 ornithine carbamoyltr 34.6 57 0.0012 31.0 4.3 64 154-223 130-202 (348)
324 COG0407 HemE Uroporphyrinogen- 34.6 1.7E+02 0.0038 27.9 7.5 14 159-172 196-209 (352)
325 cd00950 DHDPS Dihydrodipicolin 34.5 2E+02 0.0042 25.7 7.6 37 156-192 86-130 (284)
326 cd04747 OYE_like_5_FMN Old yel 34.2 2.1E+02 0.0047 27.1 8.1 88 90-196 189-288 (361)
327 TIGR00735 hisF imidazoleglycer 34.1 3.2E+02 0.0069 24.1 8.8 74 156-238 34-119 (254)
328 smart00851 MGS MGS-like domain 34.0 53 0.0011 24.2 3.3 19 197-226 4-22 (90)
329 cd00952 CHBPH_aldolase Trans-o 33.9 2.1E+02 0.0046 26.2 7.9 81 83-192 46-139 (309)
330 cd01539 PBP1_GGBP Periplasmic 33.9 1.9E+02 0.004 25.6 7.3 36 158-194 50-88 (303)
331 TIGR01093 aroD 3-dehydroquinat 33.8 2.3E+02 0.0049 24.7 7.7 25 145-173 132-156 (228)
332 cd02932 OYE_YqiM_FMN Old yello 33.6 2.5E+02 0.0054 25.9 8.3 86 89-196 198-298 (336)
333 PLN02948 phosphoribosylaminoim 33.5 2.8E+02 0.0061 28.0 9.2 74 155-236 455-537 (577)
334 PRK12416 protoporphyrinogen ox 33.5 28 0.0006 33.1 2.0 22 80-101 1-23 (463)
335 COG1903 CbiD Cobalamin biosynt 33.4 1.3E+02 0.0029 29.0 6.5 69 151-227 188-260 (367)
336 PRK00748 1-(5-phosphoribosyl)- 33.4 77 0.0017 27.2 4.7 40 156-195 150-197 (233)
337 TIGR00676 fadh2 5,10-methylene 33.3 2.2E+02 0.0047 25.7 7.7 65 154-226 17-98 (272)
338 cd01574 PBP1_LacI Ligand-bindi 33.2 2.9E+02 0.0063 23.1 13.3 74 158-240 49-146 (264)
339 PTZ00106 60S ribosomal protein 33.1 1.6E+02 0.0035 23.1 6.0 48 157-205 33-83 (108)
340 PRK01713 ornithine carbamoyltr 32.8 64 0.0014 30.3 4.3 72 154-230 91-173 (334)
341 cd00950 DHDPS Dihydrodipicolin 32.5 1.1E+02 0.0024 27.3 5.6 34 142-179 15-48 (284)
342 PRK10415 tRNA-dihydrouridine s 32.3 78 0.0017 29.4 4.7 43 155-197 152-203 (321)
343 cd06330 PBP1_Arsenic_SBP_like 32.2 3.6E+02 0.0079 24.0 9.0 37 157-193 58-96 (346)
344 cd01540 PBP1_arabinose_binding 32.2 1.5E+02 0.0033 25.4 6.4 16 158-173 47-62 (289)
345 cd02931 ER_like_FMN Enoate red 32.1 2.1E+02 0.0045 27.2 7.7 73 156-236 256-349 (382)
346 PLN02527 aspartate carbamoyltr 32.1 67 0.0015 29.8 4.3 65 153-223 85-159 (306)
347 PRK13670 hypothetical protein; 32.1 2.8E+02 0.006 26.7 8.6 27 80-107 1-30 (388)
348 TIGR02955 TMAO_TorT TMAO reduc 32.0 3.5E+02 0.0076 23.7 10.9 36 157-194 49-87 (295)
349 PRK02083 imidazole glycerol ph 32.0 3.3E+02 0.0072 23.9 8.6 74 157-239 35-120 (253)
350 TIGR03699 mena_SCO4550 menaqui 31.9 1E+02 0.0022 28.4 5.5 104 80-208 89-196 (340)
351 cd00954 NAL N-Acetylneuraminic 31.9 2.2E+02 0.0047 25.7 7.5 81 83-192 39-132 (288)
352 cd00331 IGPS Indole-3-glycerol 31.8 1.9E+02 0.0042 24.6 6.9 60 158-225 37-105 (217)
353 cd00717 URO-D Uroporphyrinogen 31.7 2.1E+02 0.0045 26.2 7.5 43 150-194 213-257 (335)
354 TIGR01304 IMP_DH_rel_2 IMP deh 31.7 1.5E+02 0.0033 28.4 6.7 55 154-208 144-211 (369)
355 cd07039 TPP_PYR_POX Pyrimidine 31.7 94 0.002 25.8 4.7 44 158-201 7-51 (164)
356 cd01018 ZntC Metal binding pro 31.6 91 0.002 27.8 4.9 41 154-194 206-246 (266)
357 COG0683 LivK ABC-type branched 31.6 3.2E+02 0.007 25.2 8.8 75 159-240 72-176 (366)
358 cd05017 SIS_PGI_PMI_1 The memb 31.5 1.1E+02 0.0023 23.7 4.8 38 156-196 61-98 (119)
359 cd00951 KDGDH 5-dehydro-4-deox 31.5 98 0.0021 28.0 5.2 34 142-179 15-48 (289)
360 cd00717 URO-D Uroporphyrinogen 31.5 1.8E+02 0.004 26.5 7.1 25 150-174 175-199 (335)
361 cd05013 SIS_RpiR RpiR-like pro 31.5 2.3E+02 0.0049 21.3 8.0 92 75-180 8-102 (139)
362 PRK07565 dihydroorotate dehydr 31.3 4.2E+02 0.0092 24.4 11.6 53 154-208 179-263 (334)
363 TIGR00737 nifR3_yhdG putative 31.3 3.1E+02 0.0068 25.0 8.6 42 155-196 150-200 (319)
364 COG0541 Ffh Signal recognition 31.3 1.5E+02 0.0033 29.3 6.6 41 155-195 118-162 (451)
365 PRK02102 ornithine carbamoyltr 31.2 64 0.0014 30.4 4.0 73 154-232 91-174 (331)
366 PRK03170 dihydrodipicolinate s 31.2 2.3E+02 0.0049 25.5 7.5 36 157-192 88-131 (292)
367 PRK13599 putative peroxiredoxi 31.2 2.1E+02 0.0045 25.0 7.0 53 152-206 49-108 (215)
368 cd01988 Na_H_Antiporter_C The 30.9 91 0.002 23.4 4.2 21 159-179 88-108 (132)
369 cd04731 HisF The cyclase subun 30.9 3.5E+02 0.0077 23.4 8.8 73 156-237 31-115 (243)
370 PRK02255 putrescine carbamoylt 30.9 75 0.0016 30.0 4.4 68 153-223 86-162 (338)
371 PRK15395 methyl-galactoside AB 30.7 3E+02 0.0065 24.8 8.3 27 79-108 23-49 (330)
372 PRK09197 fructose-bisphosphate 30.6 77 0.0017 30.3 4.4 54 155-208 191-274 (350)
373 TIGR02634 xylF D-xylose ABC tr 30.6 2E+02 0.0044 25.5 7.0 71 93-193 8-84 (302)
374 PRK08674 bifunctional phosphog 30.4 4.2E+02 0.0092 24.4 9.3 36 156-194 96-131 (337)
375 cd03016 PRX_1cys Peroxiredoxin 30.4 1.7E+02 0.0037 24.9 6.3 57 151-207 45-106 (203)
376 COG3142 CutC Uncharacterized p 30.2 1.9E+02 0.0041 26.3 6.6 74 160-239 16-113 (241)
377 PLN02417 dihydrodipicolinate s 30.2 1.3E+02 0.0028 27.2 5.7 34 142-179 16-49 (280)
378 COG1165 MenD 2-succinyl-6-hydr 30.2 1.2E+02 0.0027 30.8 5.9 80 156-239 13-94 (566)
379 COG0329 DapA Dihydrodipicolina 30.1 1E+02 0.0022 28.3 5.1 33 143-179 20-52 (299)
380 PRK11337 DNA-binding transcrip 30.1 2.4E+02 0.0053 25.1 7.5 95 73-181 133-230 (292)
381 TIGR02321 Pphn_pyruv_hyd phosp 30.1 3E+02 0.0065 25.4 8.1 103 80-206 115-227 (290)
382 TIGR00674 dapA dihydrodipicoli 30.0 2.5E+02 0.0054 25.2 7.5 81 83-192 36-128 (285)
383 PRK08255 salicylyl-CoA 5-hydro 29.9 4.7E+02 0.01 27.2 10.4 41 156-196 642-695 (765)
384 cd07576 R-amidase_like Pseudom 29.9 90 0.0019 26.9 4.5 32 144-175 11-42 (254)
385 PF01297 TroA: Periplasmic sol 29.9 1.1E+02 0.0024 26.7 5.2 41 154-194 188-228 (256)
386 PF09419 PGP_phosphatase: Mito 29.8 78 0.0017 27.0 4.0 37 156-192 66-110 (168)
387 PRK07107 inosine 5-monophospha 29.6 96 0.0021 30.9 5.1 51 156-208 245-307 (502)
388 cd06382 PBP1_iGluR_Kainate N-t 29.5 2.7E+02 0.0059 24.6 7.7 33 161-193 59-92 (327)
389 PF03808 Glyco_tran_WecB: Glyc 29.5 3.3E+02 0.0072 22.6 9.2 90 80-201 48-139 (172)
390 TIGR00853 pts-lac PTS system, 29.5 2.5E+02 0.0055 21.3 7.8 77 80-194 3-81 (95)
391 TIGR03316 ygeW probable carbam 29.5 71 0.0015 30.5 4.0 43 153-196 86-143 (357)
392 PRK03170 dihydrodipicolinate s 29.5 1.3E+02 0.0029 27.0 5.7 34 142-179 16-49 (292)
393 PF08228 RNase_P_pop3: RNase P 29.4 1.8E+02 0.0038 24.7 6.0 66 154-227 60-134 (158)
394 PRK08192 aspartate carbamoyltr 29.2 73 0.0016 30.0 4.0 41 154-196 90-130 (338)
395 cd06308 PBP1_sensor_kinase_lik 29.2 3.6E+02 0.0077 22.9 14.7 16 159-174 50-65 (270)
396 PRK12562 ornithine carbamoyltr 29.2 81 0.0018 29.8 4.3 74 154-232 90-175 (334)
397 PF02225 PA: PA domain; Inter 29.2 53 0.0012 24.0 2.6 50 155-204 47-99 (101)
398 cd00578 L-fuc_L-ara-isomerases 29.2 2.8E+02 0.006 26.7 8.1 40 155-195 53-95 (452)
399 PRK03620 5-dehydro-4-deoxygluc 29.1 1.1E+02 0.0024 28.0 5.1 34 142-179 22-55 (303)
400 PRK06847 hypothetical protein; 29.0 40 0.00087 30.7 2.2 25 77-101 1-26 (375)
401 TIGR00742 yjbN tRNA dihydrouri 29.0 1.3E+02 0.0028 28.1 5.6 44 154-197 143-204 (318)
402 PRK06027 purU formyltetrahydro 29.0 2.6E+02 0.0055 25.6 7.5 102 79-194 88-193 (286)
403 PF00148 Oxidored_nitro: Nitro 28.9 2.7E+02 0.0058 25.9 7.8 92 147-241 59-172 (398)
404 cd07367 CarBb CarBb is the B s 28.8 2.7E+02 0.0059 25.0 7.6 72 155-228 94-183 (268)
405 PF07991 IlvN: Acetohydroxy ac 28.8 1.4E+02 0.003 25.6 5.3 63 159-238 21-83 (165)
406 cd02940 DHPD_FMN Dihydropyrimi 28.8 2.5E+02 0.0053 25.6 7.3 18 154-171 182-199 (299)
407 PF02608 Bmp: Basic membrane p 28.6 1.6E+02 0.0035 26.7 6.1 82 75-183 121-207 (306)
408 PRK14024 phosphoribosyl isomer 28.6 54 0.0012 28.9 2.9 42 154-195 148-197 (241)
409 cd07038 TPP_PYR_PDC_IPDC_like 28.5 1.5E+02 0.0032 24.5 5.4 44 158-201 4-48 (162)
410 COG1763 MobB Molybdopterin-gua 28.4 1.5E+02 0.0034 25.0 5.5 26 80-108 2-29 (161)
411 cd02127 PA_hPAP21_like PA_hPAP 28.3 78 0.0017 25.1 3.5 50 156-205 49-105 (118)
412 PRK13399 fructose-1,6-bisphosp 28.3 51 0.0011 31.4 2.8 26 155-180 176-201 (347)
413 PF00156 Pribosyltran: Phospho 28.3 91 0.002 23.6 3.8 50 146-195 6-57 (125)
414 cd08205 RuBisCO_IV_RLP Ribulos 28.2 3.5E+02 0.0076 25.7 8.5 39 155-193 213-252 (367)
415 PLN02925 4-hydroxy-3-methylbut 28.2 1.1E+02 0.0025 31.9 5.4 36 157-192 115-157 (733)
416 PRK01130 N-acetylmannosamine-6 28.2 3.2E+02 0.007 23.3 7.7 52 154-208 25-90 (221)
417 PRK15482 transcriptional regul 28.1 3.9E+02 0.0084 23.8 8.4 94 73-180 128-224 (285)
418 PRK05718 keto-hydroxyglutarate 28.1 2E+02 0.0042 25.3 6.3 118 76-208 11-130 (212)
419 cd07197 nitrilase Nitrilase su 28.1 1E+02 0.0022 26.2 4.4 30 145-174 11-40 (253)
420 cd06303 PBP1_LuxPQ_Quorum_Sens 28.0 3.9E+02 0.0085 23.0 9.8 15 158-172 53-67 (280)
421 PRK15408 autoinducer 2-binding 27.9 1E+02 0.0022 28.5 4.7 38 157-194 72-111 (336)
422 cd01841 NnaC_like NnaC (CMP-Ne 27.9 3.1E+02 0.0068 21.8 9.4 93 87-198 29-140 (174)
423 PRK10606 btuE putative glutath 27.8 1.2E+02 0.0026 26.0 4.8 53 153-205 45-114 (183)
424 PRK03515 ornithine carbamoyltr 27.6 84 0.0018 29.7 4.1 74 154-231 90-174 (336)
425 cd07037 TPP_PYR_MenD Pyrimidin 27.5 1.4E+02 0.0031 24.9 5.1 45 157-201 3-48 (162)
426 PRK13601 putative L7Ae-like ri 27.2 1.3E+02 0.0029 22.6 4.4 47 157-205 16-65 (82)
427 PRK13814 pyrB aspartate carbam 27.1 95 0.0021 28.9 4.4 73 154-231 90-176 (310)
428 PF04392 ABC_sub_bind: ABC tra 27.1 2.8E+02 0.0061 24.7 7.3 89 79-199 130-222 (294)
429 PRK13111 trpA tryptophan synth 27.1 4.7E+02 0.01 23.6 8.9 19 157-175 109-127 (258)
430 PF03481 SUA5: Putative GTP-bi 27.0 1.2E+02 0.0025 24.0 4.3 30 144-173 77-106 (125)
431 PLN02489 homocysteine S-methyl 27.0 1.8E+02 0.0038 27.3 6.1 47 145-191 160-211 (335)
432 PF00218 IGPS: Indole-3-glycer 26.9 3.3E+02 0.0072 24.7 7.7 61 156-224 72-141 (254)
433 cd03013 PRX5_like Peroxiredoxi 26.9 1.8E+02 0.0038 23.8 5.5 52 153-207 52-108 (155)
434 cd05005 SIS_PHI Hexulose-6-pho 26.7 3.6E+02 0.0078 22.1 7.9 91 73-180 26-117 (179)
435 TIGR00658 orni_carb_tr ornithi 26.5 99 0.0021 28.6 4.3 72 153-230 83-164 (304)
436 PRK02929 L-arabinose isomerase 26.4 2.4E+02 0.0052 28.2 7.2 33 163-195 70-104 (499)
437 TIGR01464 hemE uroporphyrinoge 26.4 3.1E+02 0.0067 25.1 7.6 44 149-194 215-260 (338)
438 TIGR00282 metallophosphoestera 26.4 1.8E+02 0.0038 26.6 5.9 22 155-179 49-70 (266)
439 PRK09189 uroporphyrinogen-III 26.3 1.5E+02 0.0032 25.7 5.2 62 159-229 164-232 (240)
440 cd06327 PBP1_SBP_like_1 Peripl 26.1 4.7E+02 0.01 23.2 9.5 25 216-240 136-163 (334)
441 PRK14982 acyl-ACP reductase; P 26.1 3E+02 0.0066 26.0 7.6 88 147-238 74-178 (340)
442 PF01248 Ribosomal_L7Ae: Ribos 25.9 88 0.0019 23.2 3.3 50 154-205 20-73 (95)
443 PRK08649 inosine 5-monophospha 25.8 2.4E+02 0.0053 26.9 7.0 53 156-208 145-210 (368)
444 PRK06407 ornithine cyclodeamin 25.8 1.9E+02 0.004 26.6 6.0 25 164-188 181-207 (301)
445 cd03412 CbiK_N Anaerobic cobal 25.8 3.4E+02 0.0073 21.5 8.1 60 154-223 19-78 (127)
446 PRK08618 ornithine cyclodeamin 25.8 3.6E+02 0.0077 24.8 7.9 23 164-186 191-214 (325)
447 PF00282 Pyridoxal_deC: Pyrido 25.7 1.3E+02 0.0029 28.3 5.2 60 166-233 140-211 (373)
448 COG1358 RPL8A Ribosomal protei 25.6 1.5E+02 0.0033 23.8 4.7 53 151-205 29-85 (116)
449 cd02930 DCR_FMN 2,4-dienoyl-Co 25.6 1.5E+02 0.0032 27.7 5.4 42 155-196 227-284 (353)
450 cd07409 MPP_CD73_N CD73 ecto-5 25.6 1.1E+02 0.0025 27.4 4.5 36 151-186 168-203 (281)
451 TIGR03845 sulfopyru_alph sulfo 25.5 2E+02 0.0043 23.8 5.6 33 158-192 5-38 (157)
452 cd02933 OYE_like_FMN Old yello 25.5 2.3E+02 0.0049 26.5 6.6 44 154-197 243-294 (338)
453 cd04738 DHOD_2_like Dihydrooro 25.5 2.7E+02 0.0058 25.8 7.0 19 154-172 218-236 (327)
454 PLN02274 inosine-5'-monophosph 25.4 2.2E+02 0.0049 28.3 6.8 53 156-208 251-312 (505)
455 PRK05286 dihydroorotate dehydr 25.3 1.5E+02 0.0032 27.8 5.3 22 154-175 227-248 (344)
456 cd04730 NPD_like 2-Nitropropan 25.2 3.7E+02 0.0081 22.9 7.5 38 157-195 72-109 (236)
457 PRK02048 4-hydroxy-3-methylbut 25.2 1.2E+02 0.0027 31.1 5.0 36 157-192 46-88 (611)
458 cd06352 PBP1_NPR_GC_like Ligan 25.2 5.2E+02 0.011 23.4 12.9 35 159-193 62-97 (389)
459 PRK09982 universal stress prot 25.1 1.6E+02 0.0034 23.2 4.8 16 159-174 97-112 (142)
460 TIGR02482 PFKA_ATP 6-phosphofr 25.1 1.4E+02 0.003 27.7 5.1 43 153-195 79-122 (301)
461 PF04412 DUF521: Protein of un 25.1 2.2E+02 0.0047 27.7 6.5 128 82-241 213-349 (400)
462 cd04731 HisF The cyclase subun 25.0 1.5E+02 0.0031 25.9 5.0 41 156-196 153-201 (243)
463 cd07586 nitrilase_8 Uncharacte 24.9 1.3E+02 0.0027 26.3 4.6 33 145-177 12-44 (269)
464 cd06349 PBP1_ABC_ligand_bindin 24.9 4.9E+02 0.011 23.1 12.2 25 216-240 136-163 (340)
465 PRK14071 6-phosphofructokinase 24.6 1.5E+02 0.0031 28.3 5.2 45 152-196 94-139 (360)
466 PRK10569 NAD(P)H-dependent FMN 24.6 4.4E+02 0.0095 22.4 8.2 47 165-229 66-113 (191)
467 cd06304 PBP1_BmpA_like Peripla 24.6 3.6E+02 0.0078 23.0 7.3 37 157-193 48-85 (260)
468 PRK09435 membrane ATPase/prote 24.5 3.6E+02 0.0079 25.4 7.8 24 150-173 133-156 (332)
469 PRK05752 uroporphyrinogen-III 24.4 1.6E+02 0.0036 25.8 5.2 62 159-229 176-242 (255)
470 PRK13012 2-oxoacid dehydrogena 24.4 3E+02 0.0064 29.7 7.8 84 150-241 743-853 (896)
471 PRK00115 hemE uroporphyrinogen 24.4 3.3E+02 0.0071 25.2 7.4 27 150-176 184-210 (346)
472 PRK04147 N-acetylneuraminate l 24.2 1.5E+02 0.0033 26.7 5.1 42 151-192 85-134 (293)
473 PRK14804 ornithine carbamoyltr 24.2 1.3E+02 0.0028 27.9 4.7 66 154-223 87-161 (311)
474 cd03557 L-arabinose_isomerase 24.0 3.2E+02 0.0069 27.2 7.6 32 164-195 65-98 (484)
475 cd06348 PBP1_ABC_ligand_bindin 24.0 4.5E+02 0.0097 23.4 8.1 35 159-193 60-96 (344)
476 TIGR00735 hisF imidazoleglycer 24.0 1.6E+02 0.0034 26.1 5.0 41 155-195 158-206 (254)
477 KOG0399 Glutamate synthase [Am 23.9 2E+02 0.0043 32.6 6.3 83 80-188 1785-1872(2142)
478 COG3973 Superfamily I DNA and 23.7 1.9E+02 0.0041 30.2 5.9 48 146-193 635-685 (747)
479 cd06370 PBP1_Speract_GC_like L 23.7 5.2E+02 0.011 24.0 8.7 33 160-193 64-96 (404)
480 cd06318 PBP1_ABC_sugar_binding 23.7 4.1E+02 0.0089 22.5 7.5 16 158-173 48-63 (282)
481 PF02569 Pantoate_ligase: Pant 23.6 1.3E+02 0.0029 27.8 4.6 74 79-173 20-94 (280)
482 cd04732 HisA HisA. Phosphorib 23.6 1.3E+02 0.0029 25.7 4.4 40 156-195 150-197 (234)
483 cd07034 TPP_PYR_PFOR_IOR-alpha 23.5 2E+02 0.0044 23.0 5.2 40 158-197 6-50 (160)
484 PF00701 DHDPS: Dihydrodipicol 23.5 1.8E+02 0.004 26.0 5.4 34 142-179 16-49 (289)
485 PF13344 Hydrolase_6: Haloacid 23.5 1.1E+02 0.0025 23.2 3.6 37 196-241 20-56 (101)
486 PF01094 ANF_receptor: Recepto 23.5 4.9E+02 0.011 22.6 8.5 75 157-239 43-148 (348)
487 TIGR02313 HpaI-NOT-DapA 2,4-di 23.5 3.7E+02 0.008 24.4 7.5 81 83-192 38-131 (294)
488 PRK06756 flavodoxin; Provision 23.3 3.8E+02 0.0082 21.2 8.9 86 148-240 16-114 (148)
489 TIGR03568 NeuC_NnaA UDP-N-acet 23.3 6.1E+02 0.013 23.6 11.2 47 148-194 76-123 (365)
490 PF04309 G3P_antiterm: Glycero 23.3 76 0.0016 27.3 2.7 39 154-193 106-145 (175)
491 PRK01018 50S ribosomal protein 23.2 1.7E+02 0.0038 22.4 4.5 38 157-194 24-64 (99)
492 PF00578 AhpC-TSA: AhpC/TSA fa 23.2 2.2E+02 0.0048 21.1 5.1 44 150-193 44-88 (124)
493 PRK04192 V-type ATP synthase s 23.2 5.6E+02 0.012 26.3 9.2 29 79-108 226-254 (586)
494 cd01017 AdcA Metal binding pro 23.1 1.7E+02 0.0038 26.1 5.2 40 154-193 209-248 (282)
495 COG0276 HemH Protoheme ferro-l 23.1 3.3E+02 0.007 25.8 7.1 66 93-184 244-311 (320)
496 PF01583 APS_kinase: Adenylyls 23.0 1.7E+02 0.0038 24.5 4.8 61 146-206 55-117 (156)
497 cd04739 DHOD_like Dihydroorota 23.0 4.7E+02 0.01 24.1 8.2 64 152-223 112-197 (325)
498 cd07574 nitrilase_Rim1_like Un 22.9 1.1E+02 0.0025 26.8 3.9 30 145-174 14-43 (280)
499 cd04740 DHOD_1B_like Dihydroor 22.8 5.5E+02 0.012 22.9 10.7 54 155-208 105-181 (296)
500 PRK11891 aspartate carbamoyltr 22.8 1.1E+02 0.0024 30.0 4.1 76 154-231 172-260 (429)
No 1
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-39 Score=284.80 Aligned_cols=140 Identities=26% Similarity=0.355 Sum_probs=123.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (241)
||+|||||||||+||+.|||+||+.+++. +|.+.++.+.+++++ .... +.+++|+...++|.+
T Consensus 1 mk~iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~-----------~~~~---q~~~~w~~~~~~L~~ 66 (230)
T COG1794 1 MKTIGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPE-----------IETL---QRAGEWDEAGEILID 66 (230)
T ss_pred CceeEeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCccc-----------HHHH---HccCccccHHHHHHH
Confidence 79999999999999999999999999964 444444444454443 2222 257899999999999
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHH
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L 236 (241)
.++.|++.|||||++||||+|.++|++++.+++|+|||+|+|++++++.|.| |||||||++||+++||+++|
T Consensus 67 ~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~k--------kvgLLgT~~Tm~~~fY~~~l 138 (230)
T COG1794 67 AAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAK--------KVGLLGTRFTMEQGFYRKRL 138 (230)
T ss_pred HHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhcCCc--------eeEEeeccchHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988 99999999999999999999
Q ss_pred HhcCC
Q 026201 237 QHEDC 241 (241)
Q Consensus 237 ~~~G~ 241 (241)
+++|+
T Consensus 139 ~~~gi 143 (230)
T COG1794 139 EEKGI 143 (230)
T ss_pred HHCCc
Confidence 99985
No 2
>PRK10200 putative racemase; Provisional
Probab=100.00 E-value=8.8e-38 Score=275.67 Aligned_cols=139 Identities=22% Similarity=0.324 Sum_probs=123.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (241)
||+|||||||||+||++||++|++.+++. +|++.++++++.+||+... ...++|+...+.|.+
T Consensus 1 mk~iGilGGmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~--------------~~~~~~~~~~~~l~~ 66 (230)
T PRK10200 1 MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEEC--------------QRRGEWDKTGDILAE 66 (230)
T ss_pred CCeEEEccCCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHH--------------HHCCCcchHHHHHHH
Confidence 78999999999999999999999999974 7999999999999875210 023466677788999
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHH
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L 236 (241)
.+++|+++|||+|||||||+|+|++++++.+++|||||++++++++++.+.+ |||||||++|+++++|++.|
T Consensus 67 ~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii~~~~~~~~~~~~~--------~VglLaT~~Ti~s~~Y~~~l 138 (230)
T PRK10200 67 AALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAITGAGMT--------RVALLGTRYTMEQDFYRGRL 138 (230)
T ss_pred HHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehHHHHHHHHHHcCCC--------eEEEeccHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999988876554 99999999999999999999
Q ss_pred Hhc-C
Q 026201 237 QHE-D 240 (241)
Q Consensus 237 ~~~-G 240 (241)
++. |
T Consensus 139 ~~~~g 143 (230)
T PRK10200 139 TEQFS 143 (230)
T ss_pred HHhcC
Confidence 865 6
No 3
>TIGR00035 asp_race aspartate racemase.
Probab=100.00 E-value=2.3e-37 Score=271.62 Aligned_cols=140 Identities=23% Similarity=0.403 Sum_probs=126.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (241)
||+|||||||||+||++||++|++.+++. +|++++++++|.+||+... ...++|+.+.+.+.+
T Consensus 1 m~~iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~--------------~~~~~~~~~~~~l~~ 66 (229)
T TIGR00035 1 ENMIGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAY--------------ILGRGEDRPRPILID 66 (229)
T ss_pred CCeEEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHH--------------HhcCCcchHHHHHHH
Confidence 78999999999999999999999999963 8999999999999875321 023456678888999
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHH
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKL 236 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L 236 (241)
.+++|+++|||+|||||||+|+|++++++.+++||+||++++++++++.+.+ |||||||++|+++++|++.|
T Consensus 67 ~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~~~~~~~--------~VgvLaT~~T~~s~~y~~~l 138 (229)
T TIGR00035 67 IAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAVKEDGVK--------KAGLLGTKGTMKDGVYEREM 138 (229)
T ss_pred HHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCCC--------EEEEEecHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877655 99999999999999999999
Q ss_pred HhcCC
Q 026201 237 QHEDC 241 (241)
Q Consensus 237 ~~~G~ 241 (241)
+++|+
T Consensus 139 ~~~g~ 143 (229)
T TIGR00035 139 KKHGI 143 (229)
T ss_pred HHCCC
Confidence 99885
No 4
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=99.88 E-value=9.9e-22 Score=175.68 Aligned_cols=127 Identities=19% Similarity=0.304 Sum_probs=103.9
Q ss_pred EEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHH
Q 026201 83 VGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL 161 (241)
Q Consensus 83 IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L 161 (241)
|||+. |+|.+ -.++.|.+..+.. +++-+-|.. .+|+ .....+++.+++.+.+++|
T Consensus 1 IgvfDSGiGGl---tv~~~l~~~~p~~---~~iy~~D~~-----------~~PY-------G~ks~~~i~~~~~~~~~~L 56 (251)
T TIGR00067 1 IGVFDSGVGGL---SVLKEIRKQLPKE---HYIYVGDTK-----------RFPY-------GEKSPEFILEYVLELLTFL 56 (251)
T ss_pred CEEEeCCccHH---HHHHHHHHHCCCC---CEEEEecCC-----------CCCC-------CCCCHHHHHHHHHHHHHHH
Confidence 68888 99999 5666676666654 333333321 2333 5677889999999999999
Q ss_pred H-HhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHhc
Q 026201 162 E-KAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE 239 (241)
Q Consensus 162 e-~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~~ 239 (241)
+ +.|||+|||||||||+ |++++++.+++|||+|++++++.+.+.. ..++||||||++|+++++|++.+++.
T Consensus 57 ~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iPii~iie~~v~~a~~~~-------~~~~IgvLAT~~Ti~s~~y~~~i~~~ 129 (251)
T TIGR00067 57 KERHNIKLLVVACNTASALALEDLQRNFDFPVVGVIEPAIKAAIRLT-------ANGRVLVIATNATIKSNAYHEALKEI 129 (251)
T ss_pred HHhCCCCEEEEeCchHHHHHHHHHHHHCCCCEEeecHHHHHHHHHhC-------CCCeEEEEeCHHHHhhhHHHHHHHHh
Confidence 9 9999999999999995 5899999999999999999999997642 23499999999999999999999887
Q ss_pred C
Q 026201 240 D 240 (241)
Q Consensus 240 G 240 (241)
|
T Consensus 130 ~ 130 (251)
T TIGR00067 130 A 130 (251)
T ss_pred C
Confidence 6
No 5
>PRK00865 glutamate racemase; Provisional
Probab=99.82 E-value=2.7e-19 Score=160.48 Aligned_cols=129 Identities=18% Similarity=0.253 Sum_probs=103.9
Q ss_pred CCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
.+.|||+. |+|.+ -.++.|.+..+.. +++-+-|.. .+|+ ...+.++|.+++.+.+
T Consensus 5 ~~~IgvfDSGiGGL---tvl~~i~~~lp~~---~~iY~~D~~-----------~~PY-------G~ks~~~i~~~~~~~~ 60 (261)
T PRK00865 5 NAPIGVFDSGVGGL---TVLREIRRLLPDE---HIIYVGDTA-----------RFPY-------GEKSEEEIRERTLEIV 60 (261)
T ss_pred CCeEEEEECCccHH---HHHHHHHHHCCCC---CEEEEecCC-----------CCCC-------CCCCHHHHHHHHHHHH
Confidence 35799999 99999 6677777777765 233323221 2222 5677889999999999
Q ss_pred HHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHH
Q 026201 159 VFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~ 237 (241)
++|++.|||+|||||||+|. +++++++.+++||++ ++++++.+.+. ..+++||||||++|+++++|++.++
T Consensus 61 ~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvig-i~~a~~~a~~~-------~~~~~igVLaT~~Ti~s~~y~~~i~ 132 (261)
T PRK00865 61 EFLLEYGVKMLVIACNTASAVALPDLRERYDIPVVG-IVPAIKPAAAL-------TRNGRIGVLATPGTVKSAAYRDLIA 132 (261)
T ss_pred HHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEEe-eHHHHHHHHHh-------cCCCeEEEEECHHHhhchHHHHHHH
Confidence 99999999999999999996 679999999999999 78888777653 1245999999999999999999998
Q ss_pred hcC
Q 026201 238 HED 240 (241)
Q Consensus 238 ~~G 240 (241)
+.|
T Consensus 133 ~~~ 135 (261)
T PRK00865 133 RFA 135 (261)
T ss_pred HhC
Confidence 875
No 6
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=2.3e-18 Score=155.40 Aligned_cols=128 Identities=18% Similarity=0.257 Sum_probs=107.4
Q ss_pred CCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
.++|||+. |+|.+ .++|.|.+..+.+ +.-++-++ . -+|+ .+.+.++|.++..+++
T Consensus 5 ~~~IgvFDSGVGGL---sVlrei~~~LP~e-~~iY~~D~------------a-~~PY-------G~ks~e~I~~~~~~i~ 60 (269)
T COG0796 5 QPPIGVFDSGVGGL---SVLREIRRQLPDE-DIIYVGDT------------A-RFPY-------GEKSEEEIRERTLEIV 60 (269)
T ss_pred CCeEEEEECCCCcH---HHHHHHHHHCCCC-cEEEEecC------------C-CCCC-------CCCCHHHHHHHHHHHH
Confidence 45899999 99998 7889999888876 33333322 1 2233 5678899999999999
Q ss_pred HHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHH
Q 026201 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQ 237 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~ 237 (241)
++|.+.+++++|||||||++. ++++|+++++||++++ +.++.+.+. +++++||||||++|+++.+|++.++
T Consensus 61 ~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPVvGvi-Paik~A~~~-------t~~~~IgViaT~~Tvks~~y~~~i~ 132 (269)
T COG0796 61 DFLLERGIKALVIACNTASAVALEDLREKFDIPVVGVI-PAIKPAVAL-------TRNGRIGVIATPATVKSNAYRDLIA 132 (269)
T ss_pred HHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCEEEec-cchHHHHHh-------ccCCeEEEEeccchhccHHHHHHHH
Confidence 999999999999999999997 5999999999999999 888877775 3567999999999999999999998
Q ss_pred hc
Q 026201 238 HE 239 (241)
Q Consensus 238 ~~ 239 (241)
+.
T Consensus 133 ~~ 134 (269)
T COG0796 133 RF 134 (269)
T ss_pred Hh
Confidence 53
No 7
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=99.71 E-value=2.1e-17 Score=141.33 Aligned_cols=132 Identities=22% Similarity=0.305 Sum_probs=104.2
Q ss_pred EeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhC
Q 026201 86 VGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAG 165 (241)
Q Consensus 86 IGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~G 165 (241)
||||+|.++..|+++|.++.+......+.+.+.+.+|+.+... ....++ +.+.+.+.++.|++.|
T Consensus 1 Ig~i~p~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~p~~~~~~--------------~~~~~~-~~~~~~~~~~~l~~~g 65 (216)
T PF01177_consen 1 IGVISPNSNLTVERELRRMLPAREGQEVYFHDTRGFPDRIKEE--------------DAGMSA-ILDRLIEAAEKLEKAG 65 (216)
T ss_dssp EEEESSSTTHHHHHHHHHHSTTSCCTEEEEEETTTSCTSHHHH--------------HHHHHH-HHHHHHHHHHHHHHTT
T ss_pred CEEEEchHHHHHHHHHHHHhccccCCEEEEEeCCCCCCccHHH--------------hcchHH-HHHHHHHHHHHHHhCC
Confidence 5777999999999999999998722233333322233211110 000223 6667888999999999
Q ss_pred CcEEEEeCCchhhhHHHHh-ccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHhc-CC
Q 026201 166 ARCIVMPCHLSHIWHDEVC-KGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHE-DC 241 (241)
Q Consensus 166 ad~IvIaCNTAH~~~d~l~-~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~~-G~ 241 (241)
+|+|+++|||+|+++++++ +.+++|++++++++++++.+ +.+ |||||+|..|..++.|++.++++ |+
T Consensus 66 ~d~i~i~C~s~~~~~~~~~~~~~~iPv~~~~~a~~~~~~~-~~~--------ri~vl~t~~~~~~~~~~~~~~~~~gi 134 (216)
T PF01177_consen 66 VDAIVIACNSAHPFVDELRKERVGIPVVGIVEAALEAAKA-GGK--------RIGVLTTYTTEKSPLYEEFIEEAAGI 134 (216)
T ss_dssp ESEEEESSHHHHHHHHHHHHHHHSSEEEESHHHHHHHHHH-TSS--------EEEEEESHHHHHHTHHHHHHHHCTTE
T ss_pred CCEEEEcCCchhhhHHHHhhhcCceEEEeccHHHHHHHHh-cCC--------EEEEEecCcccchHHHHHHHHHhcCC
Confidence 9999999999999999999 89999999999999999888 666 99999999999999999999998 74
No 8
>PRK07475 hypothetical protein; Provisional
Probab=99.48 E-value=1.2e-13 Score=123.15 Aligned_cols=85 Identities=16% Similarity=0.247 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHH
Q 026201 148 SLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL 227 (241)
Q Consensus 148 ~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~ 227 (241)
+.+++.+.++++.|++.|||+|+++|||+|+|++++++.+++|++++..++++.+++... ..+|||||+|.+|
T Consensus 61 ~~~~~~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~~------~~~kIGILtt~~t- 133 (245)
T PRK07475 61 PSLLDAFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVATSSLLQVPLIQALLP------AGQKVGILTADAS- 133 (245)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhcc------CCCeEEEEeCCch-
Confidence 346777889999999999999999999999999999999999999999999999888631 1349999999999
Q ss_pred hhhhHHHHHHhcCC
Q 026201 228 TAGFYQEKLQHEDC 241 (241)
Q Consensus 228 ~s~~Y~~~L~~~G~ 241 (241)
.+|++.|++.|+
T Consensus 134 --~l~~~~l~~~Gi 145 (245)
T PRK07475 134 --SLTPAHLLAVGV 145 (245)
T ss_pred --hhhHHHHHhCCC
Confidence 489999999986
No 9
>PRK00865 glutamate racemase; Provisional
Probab=96.53 E-value=0.026 Score=50.81 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=67.5
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
..++|||+|=.+...+ .+|++..+....+ ..+.....+..-+.+.. ...+.+...+.+.+.+
T Consensus 109 ~~~~igVLaT~~Ti~s-~~y~~~i~~~~~~--~~v~~~~~~~lv~~ie~---------------g~~~~~~~~~~l~~~l 170 (261)
T PRK00865 109 RNGRIGVLATPGTVKS-AAYRDLIARFAPD--CQVESLACPELVPLVEA---------------GILGGPVTLEVLREYL 170 (261)
T ss_pred CCCeEEEEECHHHhhc-hHHHHHHHHhCCC--CEEEEecCHHHHHHHhC---------------CCcCCHHHHHHHHHHH
Confidence 4578999975554433 4556655544322 22332333322111110 1112244556677778
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHH
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKE 204 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~ 204 (241)
+.|++.|+|.||+.|--...+.+.+++.+ ++|+|+-.+++++.+.+
T Consensus 171 ~~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~v~vIDp~~~~a~~~~~ 218 (261)
T PRK00865 171 APLLAAGIDTLVLGCTHYPLLKPEIQQVLGEGVTLIDSGEAIARRVAR 218 (261)
T ss_pred HHHhcCCCCEEEECCcCHHHHHHHHHHHcCCCCEEECCHHHHHHHHHH
Confidence 88888899999999975555668888865 48999999999888765
No 10
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=96.49 E-value=0.02 Score=51.09 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=48.5
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~ 225 (241)
..-+..|||.|+|+|-.= +-.+.+++.+.+|+++|.++.+..+..-| +|++|+.|..
T Consensus 63 ~~~~~~GvdaiiIaCf~D-Pgl~~~Re~~~~PviGi~eAsv~~A~~vg---------rrfsViTtt~ 119 (230)
T COG4126 63 ADGEEQGVDAIIIACFSD-PGLAAARERAAIPVIGICEASVLAALFVG---------RRFSVITTTE 119 (230)
T ss_pred hcccccCCcEEEEEecCC-hHHHHHHHHhCCCceehhHHHHHHHHHhc---------ceEEEEecCc
Confidence 345778999999999987 88899999999999999999988776653 3899998854
No 11
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=96.09 E-value=0.067 Score=48.06 Aligned_cols=119 Identities=14% Similarity=0.251 Sum_probs=73.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (241)
Q Consensus 81 k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (241)
++||||= |.-+-.||-.|.+...+. ....+++++-. .+.+.- +.
T Consensus 2 ~~IGviv---p~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~-------------------------~~~~~e-----~~ 48 (279)
T PF00532_consen 2 KTIGVIV---PDISNPFFAEIIRGIEQEAREHGYQLLLCNTG-------------------------DDEEKE-----EY 48 (279)
T ss_dssp CEEEEEE---SSSTSHHHHHHHHHHHHHHHHTTCEEEEEEET-------------------------TTHHHH-----HH
T ss_pred CEEEEEE---CCCCCcHHHHHHHHHHHHHHHcCCEEEEecCC-------------------------CchHHH-----HH
Confidence 5777773 222556777777777643 45556555511 111111 34
Q ss_pred HHHHHHhCCcEEEEeCCchh-hhHHHHhccCCCCee---------------ec-----cHHHHHHHHHhcCCCCCCCCCC
Q 026201 158 RVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFL---------------HV-----SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH-~~~d~l~~~~~vPil---------------~I-----id~t~~~i~~~~~k~~~~~~~~ 216 (241)
++.|.+.+||-|++.+.+.+ ..+..+.+. ++|+| .+ ...+.+++.+.|.+
T Consensus 49 i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~-------- 119 (279)
T PF00532_consen 49 IELLLQRRVDGIILASSENDDEELRRLIKS-GIPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHR-------- 119 (279)
T ss_dssp HHHHHHTTSSEEEEESSSCTCHHHHHHHHT-TSEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHhcCCCEEEEecccCChHHHHHHHHc-CCCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccC--------
Confidence 46789999999999988777 445555444 44443 32 12456677777766
Q ss_pred E-EEEEecH---HHHhhhh--HHHHHHhcCC
Q 026201 217 R-IGVLAKN---AILTAGF--YQEKLQHEDC 241 (241)
Q Consensus 217 r-VGLLaT~---~T~~s~~--Y~~~L~~~G~ 241 (241)
+ |++++.+ .+...++ |++.++++|+
T Consensus 120 ~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl 150 (279)
T PF00532_consen 120 RPIAFIGGPEDSSTSRERLQGYRDALKEAGL 150 (279)
T ss_dssp STEEEEEESTTTHHHHHHHHHHHHHHHHTTS
T ss_pred CeEEEEecCcchHHHHHHHHHHHHHHHHcCC
Confidence 8 9999875 3444455 8999999885
No 12
>PRK10481 hypothetical protein; Provisional
Probab=96.01 E-value=0.033 Score=49.70 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 026201 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
.....++...+++.++.|++.|+|.|++.|----.-++..+.-.-.|...| ..+++++... .||||+..
T Consensus 69 ~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~l~a~r~~l~~P~~~i-~~lv~Al~~g----------~riGVitP 137 (224)
T PRK10481 69 HVSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPSLTARNAILLEPSRIL-PPLVAAIVGG----------HQVGVIVP 137 (224)
T ss_pred EEEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCCccccCccccCchhhH-HHHHHHhcCC----------CeEEEEEe
Confidence 335677888999999999999999999999765344555555555676665 5566665432 39999987
Q ss_pred HHHHhhh
Q 026201 224 NAILTAG 230 (241)
Q Consensus 224 ~~T~~s~ 230 (241)
-...-..
T Consensus 138 ~~~qi~~ 144 (224)
T PRK10481 138 VEEQLAQ 144 (224)
T ss_pred CHHHHHH
Confidence 5444333
No 13
>TIGR00035 asp_race aspartate racemase.
Probab=95.32 E-value=0.1 Score=45.86 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=65.4
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
.++|||+|=-+...+-. |++..+... +.++. -.+...+.+... .+... ..++.+...+.+.+.++
T Consensus 117 ~~~VgvLaT~~T~~s~~-y~~~l~~~g----~~v~~-p~~~~~~~i~~~---i~~~~------~~g~~~~~~~~l~~~~~ 181 (229)
T TIGR00035 117 VKKAGLLGTKGTMKDGV-YEREMKKHG----IEIVT-PDKEEQEAIMSG---IYDEV------KAGNIELGRELLLKIAK 181 (229)
T ss_pred CCEEEEEecHHHHHhHH-HHHHHHHCC----CEEEC-CCHHHHHHHHHH---HHHHH------hcCCcHHHHHHHHHHHH
Confidence 57999997777776644 555544332 22332 222221111110 00000 01111344556777778
Q ss_pred HHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA 205 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~ 205 (241)
.|.+.|||.|++.|--...+.+ ++..++|+|+-.+.+++++.+.
T Consensus 182 ~l~~~gad~iILgCTelpll~~--~~~~~~pviD~~~~~a~~~v~~ 225 (229)
T TIGR00035 182 ELEERGAEGIILGCTELSLILK--ADDLDVPLIDPMDVIAEAAVKL 225 (229)
T ss_pred HHHhCCCCEEEEeCcchHhhcc--cccCCCCeEchHHHHHHHHHHH
Confidence 8888999999999986666655 4556899999999999888764
No 14
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.27 E-value=0.1 Score=46.43 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCchhhh---------HHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEE
Q 026201 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIW---------HDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIG 219 (241)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~---------~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVG 219 (241)
++..+..+++..|.++|+|+|+-.|-++..+ .+.+++..++|++--.-++++.++..+.+ ||.
T Consensus 51 ~M~~~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~~v~vvTts~Avv~aL~al~a~--------ri~ 122 (238)
T COG3473 51 KMESYTERAALELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAKGVPVVTTSTAVVEALNALGAQ--------RIS 122 (238)
T ss_pred HHHHHHHHHHHhcCccccCEEEEeccceeeecCCchhHHHHHHHHhccCCceeechHHHHHHHHhhCcc--------eEE
Confidence 3445566777889999999999999999864 24577778999999999999999998876 885
Q ss_pred EEecHHHHhh-hhHHHHHHhcCC
Q 026201 220 VLAKNAILTA-GFYQEKLQHEDC 241 (241)
Q Consensus 220 LLaT~~T~~s-~~Y~~~L~~~G~ 241 (241)
+.|+++.+. +.-.+.|+++||
T Consensus 123 -vlTPY~~evn~~e~ef~~~~Gf 144 (238)
T COG3473 123 -VLTPYIDEVNQREIEFLEANGF 144 (238)
T ss_pred -EeccchhhhhhHHHHHHHhCCe
Confidence 557888764 345566777776
No 15
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=95.24 E-value=0.22 Score=44.74 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccC--CCCeeeccHHHHHHHHHh
Q 026201 148 SLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGC--SVPFLHVSECVAKELKEA 205 (241)
Q Consensus 148 ~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~--~vPil~Iid~t~~~i~~~ 205 (241)
+...+.+.+.++.|.+.|+|.+|+.|-=.....+++++.+ ++++|+-.+.+++++.+.
T Consensus 155 ~~~~~~l~~~l~~l~~~~~d~lILGCTh~P~l~~~i~~~~~~~v~~IDp~~~la~~~~~~ 214 (251)
T TIGR00067 155 DYALECLKRYLRPLLDTLPDTVVLGCTHFPLLKEEIEQYLPEHVRLVDSGVHTARRTAWL 214 (251)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEECcCChHHHHHHHHHHcCCCcEEECCHHHHHHHHHHH
Confidence 3455567777778888899999999985555568888764 478999999998887763
No 16
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=94.58 E-value=0.13 Score=43.75 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHH-HHhCCcEEEEeCCchhh---hHHHHhccCCCCeeeccHHHHHHH
Q 026201 150 IVENLRRKRVFL-EKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHVSECVAKEL 202 (241)
Q Consensus 150 i~~~l~~~~~~L-e~~Gad~IvIaCNTAH~---~~d~l~~~~~vPil~Iid~t~~~i 202 (241)
..+.+.+.++.| ++.|+|.|++.|.-.+. +.+.+.+..++|+++-.+.+++++
T Consensus 159 ~~~~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVid~~~~~~~~~ 215 (216)
T PF01177_consen 159 QIEILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVIDSNQAAAWAA 215 (216)
T ss_dssp HHHHHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEEccHHHHHHHh
Confidence 455566677777 59999999999999994 467888888999999888887764
No 17
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=94.52 E-value=0.19 Score=45.10 Aligned_cols=79 Identities=10% Similarity=0.152 Sum_probs=56.3
Q ss_pred HHHHHHHH-HHhCCcEEEEeCCchhhhH------HHHhc-cCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201 154 LRRKRVFL-EKAGARCIVMPCHLSHIWH------DEVCK-GCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (241)
Q Consensus 154 l~~~~~~L-e~~Gad~IvIaCNTAH~~~------d~l~~-~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~ 225 (241)
+.+.+..| ..+++|+|+.+|-..+.+. +++++ ..++|++.-..++.+++++.|.| ||+|+ |++
T Consensus 59 l~~aa~~ll~~a~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~--------RIalv-TPY 129 (239)
T TIGR02990 59 LTEAAALILPDEELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVR--------RISLL-TPY 129 (239)
T ss_pred HHHHHHHhcCCCCCCEEEEccchhheecCHHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCC--------EEEEE-CCC
Confidence 33343344 4589999999999988743 44554 35799999999999999999887 99876 455
Q ss_pred HHh-hhhHHHHHHhcCC
Q 026201 226 ILT-AGFYQEKLQHEDC 241 (241)
Q Consensus 226 T~~-s~~Y~~~L~~~G~ 241 (241)
+-. +....+.|++.||
T Consensus 130 ~~~v~~~~~~~l~~~G~ 146 (239)
T TIGR02990 130 TPETSRPMAQYFAVRGF 146 (239)
T ss_pred cHHHHHHHHHHHHhCCc
Confidence 544 2334555677675
No 18
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=93.93 E-value=0.14 Score=46.81 Aligned_cols=42 Identities=21% Similarity=0.425 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
+.+.+.++.|+++||++|+++|-. .....+|.+.+++|+++|
T Consensus 160 ~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l~iP~iGI 201 (263)
T TIGR00222 160 KKLLEDALALEEAGAQLLVLECVP-VELAAKITEALAIPVIGI 201 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhCCCCEEee
Confidence 345566788999999999999999 578899999999999998
No 19
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.92 E-value=0.75 Score=42.40 Aligned_cols=105 Identities=22% Similarity=0.228 Sum_probs=71.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
.|+-|-.+|-.-..+.++.+||.....+.+.++++|.-..+. + .....++. +.+ ++
T Consensus 113 pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa-----------~---------~~~g~deA---I~R-a~ 168 (285)
T TIGR02317 113 PKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDA-----------R---------AVEGLDAA---IER-AK 168 (285)
T ss_pred ccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCc-----------c---------cccCHHHH---HHH-HH
Confidence 466677777666688899999988887653466777542211 0 01122222 332 35
Q ss_pred HHHHhCCcEEEEeCCchhhhHHHHhccCCCCee-eccH------HHHHHHHHhcCC
Q 026201 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK 208 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil-~Iid------~t~~~i~~~~~k 208 (241)
...++|||+|.+++-+.-....++.+.+++|++ +++. .+.+++.+.|.+
T Consensus 169 ay~~AGAD~vfi~g~~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~ 224 (285)
T TIGR02317 169 AYVEAGADMIFPEALTSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYK 224 (285)
T ss_pred HHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence 567899999999998876677888888889985 5542 368889998875
No 20
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=93.72 E-value=0.85 Score=42.29 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=71.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
.|+-|-++|-.-.+..++.+||.....+.+.++++|.-..+. . ...+.++ .+.+ ++
T Consensus 117 pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa-----------~---------~~~g~de---aI~R-a~ 172 (294)
T TIGR02319 117 PKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDA-----------R---------ESFGLDE---AIRR-SR 172 (294)
T ss_pred ccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecc-----------c---------ccCCHHH---HHHH-HH
Confidence 567777777666677899999998887663467777553221 0 0112223 2333 34
Q ss_pred HHHHhCCcEEEEeCCchhhhHHHHhccCCCCe-eeccHH------HHHHHHHhcCC
Q 026201 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPF-LHVSEC------VAKELKEANMK 208 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPi-l~Iid~------t~~~i~~~~~k 208 (241)
...++|||+|.+++-+.-.....+.+.++.|+ ++|+.. +.+++.+.|.+
T Consensus 173 aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~ 228 (294)
T TIGR02319 173 EYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYN 228 (294)
T ss_pred HHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCc
Confidence 56789999999998766666778888888885 366642 68889998875
No 21
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=93.64 E-value=1.2 Score=41.26 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=72.2
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (241)
+.++||+|=- .-+-.||-.+.+..... ....+++++-. .+.+.. .
T Consensus 57 ~s~~Ig~i~p---~~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~-------------------------~~~~~e----~ 104 (333)
T COG1609 57 RTKTIGLVVP---DITNPFFAEILKGIEEAAREAGYSLLLANTD-------------------------DDPEKE----R 104 (333)
T ss_pred CCCEEEEEeC---CCCCchHHHHHHHHHHHHHHcCCEEEEECCC-------------------------CCHHHH----H
Confidence 4678888742 22226777777766643 56667766611 122222 2
Q ss_pred HHHHHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCC
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSP 215 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~ 215 (241)
+..+.|.+.++|-|++..-..+. ..+.+.+. ++|++-+- ..+++++.+.|.+
T Consensus 105 ~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~-~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~------- 176 (333)
T COG1609 105 EYLETLLQKRVDGLILLGERPNDSLLELLAAA-GIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIELGHR------- 176 (333)
T ss_pred HHHHHHHHcCCCEEEEecCCCCHHHHHHHHhc-CCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHCCCc-------
Confidence 34467889999998888833333 33444443 55554432 2356777777665
Q ss_pred CEEEEEecHH---HHh--hhhHHHHHHhcCC
Q 026201 216 LRIGVLAKNA---ILT--AGFYQEKLQHEDC 241 (241)
Q Consensus 216 ~rVGLLaT~~---T~~--s~~Y~~~L~~~G~ 241 (241)
+||+++.+. +.. -.=|.+.++++|+
T Consensus 177 -~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~ 206 (333)
T COG1609 177 -RIAFIGGPLDSSASRERLEGYRAALREAGL 206 (333)
T ss_pred -eEEEEeCCCccccHhHHHHHHHHHHHHCCC
Confidence 999999872 222 2337788877764
No 22
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=93.45 E-value=0.18 Score=45.71 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii 195 (241)
+.+.+.++.++++|||.|+++|-.. ....+|.+.+++|+|+|.
T Consensus 158 ~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v~iP~igiG 200 (254)
T cd06557 158 ERLLEDALALEEAGAFALVLECVPA-ELAKEITEALSIPTIGIG 200 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCCCCEEEec
Confidence 4455667889999999999999975 688999999999999984
No 23
>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]
Probab=93.40 E-value=0.35 Score=44.90 Aligned_cols=56 Identities=34% Similarity=0.540 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhc--------cCCCCeeeccHHHH
Q 026201 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCK--------GCSVPFLHVSECVA 199 (241)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~--------~~~vPil~Iid~t~ 199 (241)
..+....++......+.+.++|||+||-||.+=|.++|+-|. ..++|++|.-..++
T Consensus 201 ~~~~~~sl~~~~~kL~~~ke~gad~ivt~Cp~Chlq~D~~q~~i~~~~g~~~~~pv~~~~Qll~ 264 (293)
T COG2048 201 SLNLSVSLKLAKRKLQSAKEAGADCIVTPCPLCHLQLDRGQPEIKKKFGIDYDIPVLHLSQLLG 264 (293)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCEEEecCccceeehhhccHHHHHhcCCCCCCceeeHHHHHH
Confidence 445567788888888999999999999999999999876433 35789999866544
No 24
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=93.29 E-value=0.2 Score=47.19 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
.+.+.+.++.|+++||+.|+++|-... ...+|.+.++||.|+|
T Consensus 181 a~~li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l~IPtIGI 223 (332)
T PLN02424 181 AVKVVETALALQEAGCFAVVLECVPAP-VAAAITSALQIPTIGI 223 (332)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhCCCCEEee
Confidence 344666778899999999999999888 8899999999999998
No 25
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.06 E-value=0.22 Score=45.37 Aligned_cols=42 Identities=29% Similarity=0.435 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
+.+.+.++.++++|||.|++.|-.. ....+|.+.+++|.|+|
T Consensus 161 ~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l~iP~igi 202 (264)
T PRK00311 161 EKLLEDAKALEEAGAFALVLECVPA-ELAKEITEALSIPTIGI 202 (264)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCCCCEEEe
Confidence 3455667889999999999999966 68899999999999998
No 26
>PRK10481 hypothetical protein; Provisional
Probab=93.03 E-value=0.22 Score=44.46 Aligned_cols=51 Identities=31% Similarity=0.280 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKE 204 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~ 204 (241)
+.+.++.|...|||+|++.|-..+. ..+.+++.+++|+|.....+++-+.+
T Consensus 171 l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ar~~~e 222 (224)
T PRK10481 171 LIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVARLAAE 222 (224)
T ss_pred HHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHHHHHHH
Confidence 5556778889999999999998885 45899999999999987777655544
No 27
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=92.45 E-value=0.56 Score=43.02 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=66.2
Q ss_pred hccCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201 77 LNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (241)
Q Consensus 77 ~~~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (241)
..+.+.|||||=-|..-. .||+.+.+....+-....+- .|. +.+.. +......+...+.+++
T Consensus 107 ~t~~~~IgViaT~~Tvks-~~y~~~i~~~~~~~~V~~la--~p~-----------lV~lv----E~g~~~~~~~~~~l~~ 168 (269)
T COG0796 107 LTRNGRIGVIATPATVKS-NAYRDLIARFAPDCEVESLA--CPE-----------LVPLV----EEGIRGGPVALEVLKE 168 (269)
T ss_pred hccCCeEEEEeccchhcc-HHHHHHHHHhCCCCEEEEec--Ccc-----------hHHHH----hcccccCHHHHHHHHH
Confidence 345668999965454443 56666666555541111111 122 11111 1112222344556667
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhH--HHHhccCC--CCeeeccHHHHHHHHHh
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWH--DEVCKGCS--VPFLHVSECVAKELKEA 205 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~--d~l~~~~~--vPil~Iid~t~~~i~~~ 205 (241)
....|...|+|.+|+.|- |+-+ +.|++..+ +++++=.+++++.+.+.
T Consensus 169 ~l~~~~~~~~DtlVLGCT--HyPll~~~i~~~~~~~v~lids~~~~a~~~~~~ 219 (269)
T COG0796 169 YLPPLQEAGPDTLVLGCT--HYPLLKPEIQQVLGEHVALIDSGAETARRLARL 219 (269)
T ss_pred HhcchhccCCCEEEEeCc--CcHHHHHHHHHHhCCCceEeCCHHHHHHHHHHH
Confidence 778899999999999997 7643 88888765 89998777788777663
No 28
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=92.34 E-value=4.9 Score=34.20 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=40.9
Q ss_pred HHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCEE
Q 026201 159 VFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRI 218 (241)
Q Consensus 159 ~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~rV 218 (241)
+.|...++|.|++. ++......+.+++ .++|+|-+ ...+++.+.+.|. ++|
T Consensus 49 ~~l~~~~vdgiii~~~~~~~~~~~~l~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~~i 119 (268)
T cd06298 49 NNLLAKQVDGIIFMGGKISEEHREEFKR-SPTPVVLAGSVDEDNELPSVNIDYKKAAFEATELLIKNGH--------KKI 119 (268)
T ss_pred HHHHHhcCCEEEEeCCCCcHHHHHHHhc-CCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHcCC--------ceE
Confidence 45667899988874 5444445555543 24554433 2234455555443 399
Q ss_pred EEEecHHH------HhhhhHHHHHHhcC
Q 026201 219 GVLAKNAI------LTAGFYQEKLQHED 240 (241)
Q Consensus 219 GLLaT~~T------~~s~~Y~~~L~~~G 240 (241)
++++.... .+..-|++.++++|
T Consensus 120 ~~l~~~~~~~~~~~~r~~gf~~~~~~~~ 147 (268)
T cd06298 120 AFISGPLEDSINGDERLAGYKEALSEAN 147 (268)
T ss_pred EEEeCCcccccchhHHHHHHHHHHHHcC
Confidence 99974322 11233677777665
No 29
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=91.47 E-value=4.6 Score=35.96 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=44.7
Q ss_pred HHHHHHHhCCcEEEEe-CCc-hhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVMP-CHL-SHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSP 215 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIa-CNT-AH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~ 215 (241)
.++.|...++|.|++. ++. ....++++.+ .++|++-+- ..+++++.+.|.+
T Consensus 109 ~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~v~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~r------- 180 (328)
T PRK11303 109 CAEHLLQRQVDALIVSTSLPPEHPFYQRLQN-DGLPIIALDRALDREHFTSVVSDDQDDAEMLAESLLKFPAE------- 180 (328)
T ss_pred HHHHHHHcCCCEEEEcCCCCCChHHHHHHHh-cCCCEEEECCCCCCCCCCEEEeCCHHHHHHHHHHHHHCCCC-------
Confidence 3456778899988874 332 2344555543 356655431 2345566666654
Q ss_pred CEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201 216 LRIGVLAKNA-----ILTAGFYQEKLQHEDC 241 (241)
Q Consensus 216 ~rVGLLaT~~-----T~~s~~Y~~~L~~~G~ 241 (241)
+|++++... ..+..-|.+.++++|+
T Consensus 181 -~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 210 (328)
T PRK11303 181 -SILLLGALPELSVSFEREQGFRQALKDDPR 210 (328)
T ss_pred -eEEEEeCccccccHHHHHHHHHHHHHHcCC
Confidence 999997542 2233447888887763
No 30
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=91.44 E-value=2.9 Score=35.81 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=39.8
Q ss_pred HHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCCE
Q 026201 158 RVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 158 ~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~r 217 (241)
++.|...++|.|++ +++.... ..++. ..++|+|.+- ..+++.+.+.|.+ +
T Consensus 48 i~~l~~~~~dgiii~~~~~~~~-~~~~~-~~~iPvV~~~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~g~~--------~ 117 (263)
T cd06280 48 LELMEEERVTGVIFAPTRATLR-RLAEL-RLSFPVVLIDRAGPAGRVDAVVLDNRAAARTLVEHLVAQGYR--------R 117 (263)
T ss_pred HHHHHhCCCCEEEEeCCCCCch-HHHHH-hcCCCEEEECCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc--------e
Confidence 35677889996666 5443322 22222 3356665441 2345566666544 8
Q ss_pred EEEEecHHH----HhhhhHHHHHHhcC
Q 026201 218 IGVLAKNAI----LTAGFYQEKLQHED 240 (241)
Q Consensus 218 VGLLaT~~T----~~s~~Y~~~L~~~G 240 (241)
|++++++.. .+..-|++.++++|
T Consensus 118 i~~~~~~~~~~~~~R~~gf~~~~~~~~ 144 (263)
T cd06280 118 IGGLFGNASTTGAERRAGYEDAMRRHG 144 (263)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 998865421 22233677776665
No 31
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=91.39 E-value=0.56 Score=41.85 Aligned_cols=51 Identities=27% Similarity=0.210 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhH-HHHhccCCCCeeeccHHHHHHHHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECVAKELKE 204 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~-d~l~~~~~vPil~Iid~t~~~i~~ 204 (241)
+.++++.|..+|||+||+=|-..|... +.+++.+++|+|---..+++.+.+
T Consensus 167 l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lvAr~~~E 218 (221)
T PF07302_consen 167 LAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLVARLAAE 218 (221)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHHHHHHHH
Confidence 456778899999999999999999997 778889999998744444444433
No 32
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=91.37 E-value=2.9 Score=38.68 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=69.8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
.|+-|-.+|-.-....++.+||.....+....+++|.-..+. + .....++. +.+ ++
T Consensus 118 pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa-----------~---------~~~g~deA---I~R-a~ 173 (292)
T PRK11320 118 AKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDA-----------L---------AVEGLDAA---IER-AQ 173 (292)
T ss_pred ccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCc-----------c---------cccCHHHH---HHH-HH
Confidence 466677766666677899999988877654466776442211 0 01123333 333 34
Q ss_pred HHHHhCCcEEEEeCCchhhhHHHHhccCCCCee-eccH------HHHHHHHHhcCC
Q 026201 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSE------CVAKELKEANMK 208 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil-~Iid------~t~~~i~~~~~k 208 (241)
...++|||+|.+++-+.--.+.++.+.+++|++ +++. ...+++.+.|.+
T Consensus 174 aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~ 229 (292)
T PRK11320 174 AYVEAGADMIFPEAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVA 229 (292)
T ss_pred HHHHcCCCEEEecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCc
Confidence 567899999999998766667778888889974 4442 258889998875
No 33
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=91.33 E-value=4.3 Score=36.06 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=41.5
Q ss_pred HHHHHHhCCcEEEEeC-CchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201 158 RVFLEKAGARCIVMPC-HLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaC-NTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r 217 (241)
++.|...++|.|++.+ +..-...+.+....++|++-+ ...+++++.+.|.+ +
T Consensus 105 ~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i~~~~~~~~~~~v~~d~~~~~~~a~~~L~~~G~~--------~ 176 (327)
T PRK10423 105 LETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGYT--------R 176 (327)
T ss_pred HHHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHcCCC--------e
Confidence 3457788999777754 322222333433235665433 12334555555544 9
Q ss_pred EEEEecHHH-----HhhhhHHHHHHhcCC
Q 026201 218 IGVLAKNAI-----LTAGFYQEKLQHEDC 241 (241)
Q Consensus 218 VGLLaT~~T-----~~s~~Y~~~L~~~G~ 241 (241)
|++++.+.. .+..-|.+.++++|+
T Consensus 177 I~~i~~~~~~~~~~~R~~Gf~~al~~~~~ 205 (327)
T PRK10423 177 IACITGPLDKTPARLRLEGYRAAMKRAGL 205 (327)
T ss_pred EEEEeCCccccchHHHHHHHHHHHHHcCC
Confidence 999965321 223347777877663
No 34
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=91.30 E-value=5.2 Score=35.86 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=41.9
Q ss_pred HHHHHHhCCcEEEEeCCchh--hhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 158 RVFLEKAGARCIVMPCHLSH--IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH--~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
++.|...++|.|++.-.+.. ...+.+++ .++|++-+ ...+++++.+.|.+
T Consensus 113 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------- 183 (342)
T PRK10014 113 FSTLLNQGVDGVVIAGAAGSSDDLREMAEE-KGIPVVFASRASYLDDVDTVRPDNMQAAQLLTEHLIRNGHQ-------- 183 (342)
T ss_pred HHHHHhCCCCEEEEeCCCCCcHHHHHHHhh-cCCCEEEEecCCCCCCCCEEEeCCHHHHHHHHHHHHHCCCC--------
Confidence 34577788997777533322 23344443 35555432 12345566666544
Q ss_pred EEEEEecHHHH-----hhhhHHHHHHhcCC
Q 026201 217 RIGVLAKNAIL-----TAGFYQEKLQHEDC 241 (241)
Q Consensus 217 rVGLLaT~~T~-----~s~~Y~~~L~~~G~ 241 (241)
+|++++.+.+. +..=|.+.++++|+
T Consensus 184 ~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~ 213 (342)
T PRK10014 184 RIAWLGGQSSSLTRAERVGGYCATLLKFGL 213 (342)
T ss_pred EEEEEcCCcccccHHHHHHHHHHHHHHcCC
Confidence 99999754321 22337888877763
No 35
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=91.04 E-value=5.4 Score=35.61 Aligned_cols=75 Identities=7% Similarity=0.068 Sum_probs=42.2
Q ss_pred HHHHHHhCCcEEEEeC-Cc-hhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCC
Q 026201 158 RVFLEKAGARCIVMPC-HL-SHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaC-NT-AH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~ 216 (241)
++.|...++|.|++.. .. ....+..+++ .++|++-+- ..+++++.+.|.+
T Consensus 109 ~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~dn~~~~~~~~~~L~~~G~~-------- 179 (327)
T TIGR02417 109 IENLLARQVDALIVASCMPPEDAYYQKLQN-EGLPVVALDRSLDDEHFCSVISDDVDAAAELIERLLSQHAD-------- 179 (327)
T ss_pred HHHHHHcCCCEEEEeCCCCCChHHHHHHHh-cCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHCCCC--------
Confidence 3567788999877643 32 2334455543 356655331 1234556555544
Q ss_pred EEEEEecHHH-----HhhhhHHHHHHhcCC
Q 026201 217 RIGVLAKNAI-----LTAGFYQEKLQHEDC 241 (241)
Q Consensus 217 rVGLLaT~~T-----~~s~~Y~~~L~~~G~ 241 (241)
+|++++.... .+..=|++.++++|+
T Consensus 180 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~ 209 (327)
T TIGR02417 180 EFWYLGAQPELSVSRDRLAGFRQALKQATL 209 (327)
T ss_pred eEEEEeCcccchhHHHHHHHHHHHHHHcCC
Confidence 9999974332 223347778877663
No 36
>PRK07475 hypothetical protein; Provisional
Probab=91.02 E-value=0.74 Score=41.13 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHHHHH--hCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHH
Q 026201 146 DDSLIVENLRRKRVFLEK--AGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVA 199 (241)
Q Consensus 146 d~~~i~~~l~~~~~~Le~--~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~ 199 (241)
+-++..+.+.+.++.|.+ .|+|.|++.|--.-.+.+.+++.+++|+++....+.
T Consensus 175 d~~~~~~~l~~~~~~l~~~~~~~daIvL~CTeLp~~~~~le~~~glPViDs~t~~~ 230 (245)
T PRK07475 175 DNEAAEQEVVAAARALLERHPDIGAIVLECTNMPPYAAAIQRATGLPVFDIVTLIN 230 (245)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCCCEEEEcCcChHHHHHHHHHhcCCCEEeHHHHHH
Confidence 444555667777788874 499999999998888889999989999999866553
No 37
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=90.77 E-value=6.2 Score=35.31 Aligned_cols=75 Identities=5% Similarity=0.031 Sum_probs=42.3
Q ss_pred HHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCCE
Q 026201 158 RVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 158 ~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~r 217 (241)
++.|...++|.|++. +.......+.+. ..++|++-+. ..+++++.+.|.+ +
T Consensus 112 ~~~~~~~~vdgiI~~~~~~~~~~~~~l~-~~~iPvV~~~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~Gh~--------~ 182 (331)
T PRK14987 112 LESMLSWNIDGLILTERTHTPRTLKMIE-VAGIPVVELMDSQSPCLDIAVGFDNFEAARQMTTAIIARGHR--------H 182 (331)
T ss_pred HHHHHhcCCCEEEEcCCCCCHHHHHHHH-hCCCCEEEEecCCCCCCCceEEeCcHHHHHHHHHHHHHCCCc--------e
Confidence 345678899988874 322222334443 2466766431 2345556666554 9
Q ss_pred EEEEecHHH----HhhhhHHHHHHhcCC
Q 026201 218 IGVLAKNAI----LTAGFYQEKLQHEDC 241 (241)
Q Consensus 218 VGLLaT~~T----~~s~~Y~~~L~~~G~ 241 (241)
||+++.+.. .+..=|++.++++|+
T Consensus 183 I~~i~~~~~~~~~~R~~Gf~~al~~~g~ 210 (331)
T PRK14987 183 IAYLGARLDERTIIKQKGYEQAMLDAGL 210 (331)
T ss_pred EEEEcCCCcccHHHHHHHHHHHHHHcCC
Confidence 999975421 122337778877763
No 38
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=90.62 E-value=2.3 Score=32.72 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhh---hHHHHhccCCC-----CeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSV-----PFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~---~~d~l~~~~~v-----Pil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~ 225 (241)
..+.+++|++.|..++++.=|+... +.+.+++ .++ -|+.-...+++.+++.. ..++|.++|+++
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~-~Gi~~~~~~i~ts~~~~~~~l~~~~-------~~~~v~vlG~~~ 90 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKK-LGIPVDEDEIITSGMAAAEYLKEHK-------GGKKVYVLGSDG 90 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHH-TTTT--GGGEEEHHHHHHHHHHHHT-------TSSEEEEES-HH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHh-cCcCCCcCEEEChHHHHHHHHHhcC-------CCCEEEEEcCHH
Confidence 3456678999998888888776555 3466643 343 36777788999999841 234999999986
Q ss_pred HHhhhhHHHHHHhcCC
Q 026201 226 ILTAGFYQEKLQHEDC 241 (241)
Q Consensus 226 T~~s~~Y~~~L~~~G~ 241 (241)
.++.|++.||
T Consensus 91 ------l~~~l~~~G~ 100 (101)
T PF13344_consen 91 ------LREELREAGF 100 (101)
T ss_dssp ------HHHHHHHTTE
T ss_pred ------HHHHHHHcCC
Confidence 3456666664
No 39
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=90.54 E-value=0.56 Score=41.98 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i 202 (241)
.++.+.++.-|||.|++-|--+....++|++.++||+++=+-+.++.+
T Consensus 164 ~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVIDgv~Aav~~a 211 (230)
T COG4126 164 IEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVIDGVAAAVKLA 211 (230)
T ss_pred HHHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCcccchHHHHHHH
Confidence 445577889999999999999999999999999999999776665543
No 40
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=90.19 E-value=7.9 Score=33.00 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=42.1
Q ss_pred HHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCCE
Q 026201 158 RVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 158 ~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~r 217 (241)
++.|.+.++|.|++ +++..-...+.+++ .++|++-+- ..+++.+.+.|.+ +
T Consensus 48 ~~~l~~~~vdgiii~~~~~~~~~~~~l~~-~~iPvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------~ 118 (268)
T cd06273 48 ARKLLERGVDGLALIGLDHSPALLDLLAR-RGVPYVATWNYSPDSPYPCVGFDNREAGRLAARHLIALGHR--------R 118 (268)
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHHh-CCCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHCCCC--------e
Confidence 34577789997776 44433233444433 356665541 2345556655544 9
Q ss_pred EEEEecH------HHHhhhhHHHHHHhcC
Q 026201 218 IGVLAKN------AILTAGFYQEKLQHED 240 (241)
Q Consensus 218 VGLLaT~------~T~~s~~Y~~~L~~~G 240 (241)
|++++.+ ...+..-|++.++++|
T Consensus 119 i~~i~~~~~~~~~~~~r~~gf~~~l~~~~ 147 (268)
T cd06273 119 IAMIFGPTQGNDRARARRAGVRAALAEAG 147 (268)
T ss_pred EEEEeccccCCccHHHHHHHHHHHHHHcC
Confidence 9999632 2233344777777765
No 41
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=89.97 E-value=4.5 Score=34.44 Aligned_cols=74 Identities=11% Similarity=0.046 Sum_probs=41.8
Q ss_pred HHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCee-------------ec-----cHHHHHHHHHhcCCCCCCCCCCE
Q 026201 157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFL-------------HV-----SECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 157 ~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil-------------~I-----id~t~~~i~~~~~k~~~~~~~~r 217 (241)
.++.|.+.++|.|++ +|+.....++.+++.. |++ +. ...+++.+.+.|.+ +
T Consensus 47 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~--pvv~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------~ 116 (260)
T cd06286 47 YLELLKTKQVDGLILCSRENDWEVIEPYTKYG--PIVLCEEYDSKNISSVYIDHYEAFYEALKYLIQKGYR--------K 116 (260)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHhcCC--CEEEEecccCCCCCEEEECChHHHHHHHHHHHHCCCc--------e
Confidence 345677889997776 4543333455555432 433 21 22455666666544 9
Q ss_pred EEEEecHHH-----HhhhhHHHHHHhcC
Q 026201 218 IGVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 218 VGLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
|++++.+.. .+..=|++.++++|
T Consensus 117 i~~i~~~~~~~~~~~R~~Gf~~~l~~~~ 144 (260)
T cd06286 117 IAYCIGRKKSLNSQSRKKAYKDALEEYG 144 (260)
T ss_pred EEEEcCCcccchhHHHHHHHHHHHHHcC
Confidence 999965421 22334677777665
No 42
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=89.44 E-value=2 Score=38.59 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=64.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
.+++|+||=-+...+ .|||+-.+. ..+.+|+-.+.+.. .+ +-.-+...+ ...-.+.=.+.+.+.++
T Consensus 117 ~kkvgLLgT~~Tm~~-~fY~~~l~~----~gievvvPdd~~q~-~v-----~~iIy~El~---~G~~~~~sr~~~~~ii~ 182 (230)
T COG1794 117 AKKVGLLGTRFTMEQ-GFYRKRLEE----KGIEVVVPDDDEQA-EV-----NRIIYEELC---QGIVKDASRELYLAVIE 182 (230)
T ss_pred CceeEEeeccchHHh-HHHHHHHHH----CCceEecCCHHHHH-HH-----HHHHHHHHh---cccchHHHHHHHHHHHH
Confidence 789999976666654 566654432 23555553322110 00 000000000 11112233455667778
Q ss_pred HHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEA 205 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~ 205 (241)
.|++.|||+|++.|--....+++- .+++|+++-....++++.+.
T Consensus 183 ~l~~~Gae~vIlGCTEi~lll~~~--d~~vP~~Dtt~iha~aav~~ 226 (230)
T COG1794 183 RLAERGAEGVILGCTEIPLLLSQD--DSSVPVFDTTAIHAEAAVEL 226 (230)
T ss_pred HHHHcCCCEEEEeccchheeecCC--cccCcccccHHHHHHHHHHH
Confidence 999999999999998777766443 37899999877777766553
No 43
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.23 E-value=11 Score=31.83 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=39.5
Q ss_pred HHHHHHhCCcEEEE-eCCch-hhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 158 RVFLEKAGARCIVM-PCHLS-HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 158 ~~~Le~~Gad~IvI-aCNTA-H~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
++.|.+.++|.|++ +|+.. ...++++.+ .++|++-+ ...+++.+.+.|. +
T Consensus 48 i~~~~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~ 118 (268)
T cd06289 48 LSTMLEHGVAGIILCPAAGTSPDLLKRLAE-SGIPVVLVAREVAGAPFDYVGPDNAAGARLATEHLISLGH--------R 118 (268)
T ss_pred HHHHHHcCCCEEEEeCCCCccHHHHHHHHh-cCCCEEEEeccCCCCCCCEEeecchHHHHHHHHHHHHCCC--------C
Confidence 35577889997766 45432 223444433 35666533 1233444444443 3
Q ss_pred EEEEEecHH-----HHhhhhHHHHHHhcC
Q 026201 217 RIGVLAKNA-----ILTAGFYQEKLQHED 240 (241)
Q Consensus 217 rVGLLaT~~-----T~~s~~Y~~~L~~~G 240 (241)
+|++++... ..+..-|.+.+++.|
T Consensus 119 ~i~~l~~~~~~~~~~~r~~gf~~~l~~~~ 147 (268)
T cd06289 119 RIAFIGGLEDSSTRRERLAGYRAALAEAG 147 (268)
T ss_pred CEEEecCCccccchHHHHHHHHHHHHHcC
Confidence 899997532 223344666666655
No 44
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=88.97 E-value=11 Score=33.57 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=64.4
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (241)
.++||++=. .-+-.||..+.+...+. ....+++++.. .+.+... +
T Consensus 59 ~~~Igvv~~---~~~~~f~~~l~~~i~~~~~~~g~~~~i~~~~-------------------------~~~~~~~----~ 106 (329)
T TIGR01481 59 TTTVGVIIP---DISNIYYAELARGIEDIATMYKYNIILSNSD-------------------------EDPEKEV----Q 106 (329)
T ss_pred CCEEEEEeC---CCCchhHHHHHHHHHHHHHHcCCEEEEEeCC-------------------------CCHHHHH----H
Confidence 468898842 22346888887776543 34555554411 1111111 2
Q ss_pred HHHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
.++.|...++|.|++. +.......+.+.+ .++|++-+ +..+++++.+.|.+
T Consensus 107 ~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~-------- 177 (329)
T TIGR01481 107 VLNTLLSKQVDGIIFMGGTITEKLREEFSR-SPVPVVLAGTVDKENELPSVNIDYKQATKEAVGELIAKGHK-------- 177 (329)
T ss_pred HHHHHHhCCCCEEEEeCCCCChHHHHHHHh-cCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------
Confidence 2345677899977763 3322233344443 35665533 12345556666554
Q ss_pred EEEEEecHH------HHhhhhHHHHHHhcCC
Q 026201 217 RIGVLAKNA------ILTAGFYQEKLQHEDC 241 (241)
Q Consensus 217 rVGLLaT~~------T~~s~~Y~~~L~~~G~ 241 (241)
+|++++.+. ..+..-|.+.++++|+
T Consensus 178 ~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~ 208 (329)
T TIGR01481 178 SIAFVGGPLSDSINGEDRLEGYKEALNKAGI 208 (329)
T ss_pred eEEEEecCcccccchHHHHHHHHHHHHHcCC
Confidence 999996322 1223347788887764
No 45
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=88.93 E-value=11 Score=33.24 Aligned_cols=74 Identities=8% Similarity=0.099 Sum_probs=41.4
Q ss_pred HHHH-HhCCcEEEEeCCchhh--hHHHHhccCCCCeeeccH------------------------HHHHHHHHhcCCCCC
Q 026201 159 VFLE-KAGARCIVMPCHLSHI--WHDEVCKGCSVPFLHVSE------------------------CVAKELKEANMKPLE 211 (241)
Q Consensus 159 ~~Le-~~Gad~IvIaCNTAH~--~~d~l~~~~~vPil~Iid------------------------~t~~~i~~~~~k~~~ 211 (241)
+.|. +.+++.|+.+..+... ..+.+ +..++|+|.+.. ..++.+.+.+.+
T Consensus 59 ~~li~~~~v~~vig~~~s~~~~~~~~~~-~~~~vP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--- 134 (312)
T cd06333 59 RKLIEEDKVDAIIGPSTTPATMAVAPVA-EEAKTPMISLAPAAAIVEPKRKWVFKTPQNDRLMAEAILADMKKRGVK--- 134 (312)
T ss_pred HHHHhhCCeEEEECCCCCHHHHHHHHHH-HhcCCCEEEccCCccccCCCCCcEEEcCCCcHHHHHHHHHHHHHcCCC---
Confidence 3444 4599999987765432 33433 344666665321 123444454444
Q ss_pred CCCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201 212 AGSPLRIGVLAKNAIL---TAGFYQEKLQHEDC 241 (241)
Q Consensus 212 ~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~ 241 (241)
||++++.+... ...-|++.+++.|+
T Consensus 135 -----~vail~~~~~~~~~~~~~~~~~~~~~G~ 162 (312)
T cd06333 135 -----TVAFIGFSDAYGESGLKELKALAPKYGI 162 (312)
T ss_pred -----EEEEEecCcHHHHHHHHHHHHHHHHcCC
Confidence 99999865432 22346666766653
No 46
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=88.54 E-value=17 Score=32.25 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=40.4
Q ss_pred HHHHHHh-CCcEEEEeCCchh--hhHHHHhccCCCCeeecc-------------------------HHHHHHHHHhcCCC
Q 026201 158 RVFLEKA-GARCIVMPCHLSH--IWHDEVCKGCSVPFLHVS-------------------------ECVAKELKEANMKP 209 (241)
Q Consensus 158 ~~~Le~~-Gad~IvIaCNTAH--~~~d~l~~~~~vPil~Ii-------------------------d~t~~~i~~~~~k~ 209 (241)
++.|... +++.|+.+.-+.. ...+.+ +..++|+|... ...++.+.+.+.+
T Consensus 60 ~~~l~~~~~v~avig~~~s~~~~~~~~~~-~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~- 137 (336)
T cd06326 60 TRKLIEDDKVFALFGYVGTPTTAAALPLL-EEAGVPLVGPFTGASSLRDPPDRNVFNVRASYADEIAAIVRHLVTLGLK- 137 (336)
T ss_pred HHHHHhhcCcEEEEeCCCchhHHHHHHHH-HHcCCeEEEecCCcHHhcCCCCCceEEeCCChHHHHHHHHHHHHHhCCc-
Confidence 3456664 9999988754432 223333 34466666531 1234445555443
Q ss_pred CCCCCCCEEEEEecHHH---HhhhhHHHHHHhcC
Q 026201 210 LEAGSPLRIGVLAKNAI---LTAGFYQEKLQHED 240 (241)
Q Consensus 210 ~~~~~~~rVGLLaT~~T---~~s~~Y~~~L~~~G 240 (241)
||+++..+.. -...-|++.+++.|
T Consensus 138 -------~v~~l~~~~~~~~~~~~~~~~~~~~~G 164 (336)
T cd06326 138 -------RIAVFYQDDAFGKDGLAGVEKALAARG 164 (336)
T ss_pred -------eEEEEEecCcchHHHHHHHHHHHHHcC
Confidence 9999976532 22344667776665
No 47
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=88.49 E-value=7.9 Score=32.83 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=41.0
Q ss_pred HHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 157 ~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
.++.|...++|.|++ +++..-...+.+.+ .++|++-+ ...+++.+.+.|.+
T Consensus 47 ~~~~l~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~-------- 117 (268)
T cd01575 47 LLRTLLSRRPAGLILTGLEHTERTRQLLRA-AGIPVVEIMDLPPDPIDMAVGFSHAEAGRAMARHLLARGYR-------- 117 (268)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHHh-cCCCEEEEecCCCCCCCCeEEeCcHHHHHHHHHHHHHCCCC--------
Confidence 345677889997766 44422123344332 35565533 12344455555443
Q ss_pred EEEEEecHHH-----HhhhhHHHHHHhcC
Q 026201 217 RIGVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 217 rVGLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
+|++++.+.. .+..-|++.+++.|
T Consensus 118 ~i~~i~~~~~~~~~~~r~~gf~~~l~~~~ 146 (268)
T cd01575 118 RIGFLGARMDDTRAQQRLEGFRAALRAAG 146 (268)
T ss_pred cEEEecCCCCcccHHHHHHHHHHHHHHcC
Confidence 8999986653 22344677777765
No 48
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=87.58 E-value=13 Score=31.45 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=38.9
Q ss_pred HHHHHHhCCcEEEE-eCCchh-hhHHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201 158 RVFLEKAGARCIVM-PCHLSH-IWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 158 ~~~Le~~Gad~IvI-aCNTAH-~~~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~r 217 (241)
++.|...++|.|++ +++... ..++.+++ .++|+|-+ +...++.+.+.|.+ +
T Consensus 48 ~~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~--------~ 118 (266)
T cd06282 48 VETLLRQRVDGLILTVADAATSPALDLLDA-ERVPYVLAYNDPQPGRPSVSVDNRAAARDVAQALAALGHR--------R 118 (266)
T ss_pred HHHHHhcCCCEEEEecCCCCchHHHHHHhh-CCCCEEEEeccCCCCCCEEeeCcHHHHHHHHHHHHHcCcc--------c
Confidence 34566778888887 454321 23444433 24554322 22344555555443 8
Q ss_pred EEEEecH------HHHhhhhHHHHHHhcC
Q 026201 218 IGVLAKN------AILTAGFYQEKLQHED 240 (241)
Q Consensus 218 VGLLaT~------~T~~s~~Y~~~L~~~G 240 (241)
|+++..+ ..-+..-|.+.++++|
T Consensus 119 i~~i~~~~~~~~~~~~r~~gf~~~l~~~~ 147 (266)
T cd06282 119 IAMLAGRLAASDRARQRYAGYRAAMRAAG 147 (266)
T ss_pred EEEeccccccCchHHHHHHHHHHHHHHcC
Confidence 9999532 1223344677777765
No 49
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=87.57 E-value=14 Score=31.68 Aligned_cols=76 Identities=16% Similarity=0.068 Sum_probs=40.8
Q ss_pred HHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCC
Q 026201 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSP 215 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~ 215 (241)
++.|...++|.|++.....+ ..++.+++ .++|++-+- ..+++++.+.. ...
T Consensus 53 ~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~-~~iPvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~------~g~ 125 (272)
T cd06300 53 IRNLIAQGVDAIIINPASPTALNPVIEEACE-AGIPVVSFDGTVTTPCAYNVNEDQAEFGKQGAEWLVKEL------GGK 125 (272)
T ss_pred HHHHHHcCCCEEEEeCCChhhhHHHHHHHHH-CCCeEEEEecCCCCCceeEecCCHHHHHHHHHHHHHHHc------CCC
Confidence 34566779998888653322 23445443 356655431 23444555541 023
Q ss_pred CEEEEEecH-----HHHhhhhHHHHHHhcC
Q 026201 216 LRIGVLAKN-----AILTAGFYQEKLQHED 240 (241)
Q Consensus 216 ~rVGLLaT~-----~T~~s~~Y~~~L~~~G 240 (241)
++|++++.. ...+..-|++.++++|
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~ 155 (272)
T cd06300 126 GNVLVVRGLAGHPVDEDRYAGAKEVLKEYP 155 (272)
T ss_pred ceEEEEECCCCCcchHHHHHHHHHHHHHCC
Confidence 489999632 2223344777777665
No 50
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=87.16 E-value=14 Score=33.32 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=40.0
Q ss_pred HHHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCC-ee--------------ec-----cHHHHHHHHHhcCCCCCCCCCC
Q 026201 158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVP-FL--------------HV-----SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vP-il--------------~I-----id~t~~~i~~~~~k~~~~~~~~ 216 (241)
++.|...++|.|++.... ....++.+.+. +| ++ .+ ...+++++.+.|.+
T Consensus 108 i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~--~p~vV~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G~~-------- 177 (343)
T PRK10727 108 IEQLIRHRCAALVVHAKMIPDAELASLMKQ--IPGMVLINRILPGFENRCIALDDRYGAWLATRHLIQQGHT-------- 177 (343)
T ss_pred HHHHHhcCCCEEEEecCCCChHHHHHHHhc--CCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc--------
Confidence 345778899988876432 22223444332 33 22 11 11244556665544
Q ss_pred EEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201 217 RIGVLAKNA-----ILTAGFYQEKLQHEDC 241 (241)
Q Consensus 217 rVGLLaT~~-----T~~s~~Y~~~L~~~G~ 241 (241)
+|++++... ..+..-|.+.++++|+
T Consensus 178 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi 207 (343)
T PRK10727 178 RIGYLCSNHSISDAEDRLQGYYDALAESGI 207 (343)
T ss_pred cEEEEeCCccccchHHHHHHHHHHHHHCCC
Confidence 999997532 1223347888887764
No 51
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=87.04 E-value=2.1 Score=38.72 Aligned_cols=57 Identities=26% Similarity=0.453 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHh----c----cCCCCeeeccHHHHHHH
Q 026201 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVC----K----GCSVPFLHVSECVAKEL 202 (241)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~----~----~~~vPil~Iid~t~~~i 202 (241)
+.+...+...+.++.+++.|||.||-+|.+-+..++.-+ + ..++|++|+++-+++++
T Consensus 203 ~~~~s~~l~~~k~~~~~~~gad~ivt~Cp~C~~~l~~~~~~~~~~~g~~~~~~V~h~~elLa~al 267 (290)
T TIGR03288 203 DLDVALDMTKEKLENMKEAGADCIVNVCPFCHLQFDRGQIEIKEKFGEEYNIPVLHYSQLLGLAM 267 (290)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEeCchHHHHHHHHHHHHHHhcCCCCCcCeeeHHHHHHHHc
Confidence 445555666677888899999999999999998886532 2 24799999999887766
No 52
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=86.69 E-value=10 Score=35.03 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=45.8
Q ss_pred HHHHHHHhCCcEEEEeCC---------chhhhHHHHhccCCCCeee---ccHHH-HHHHHHhcCCCCCCCCCCEEEEEec
Q 026201 157 KRVFLEKAGARCIVMPCH---------LSHIWHDEVCKGCSVPFLH---VSECV-AKELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCN---------TAH~~~d~l~~~~~vPil~---Iid~t-~~~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
.++.++++|||.|++-.. .......++++.+++|++- |.+.. +.++.+.|.. -..+||
T Consensus 121 ~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~---------gV~iGt 191 (307)
T TIGR03151 121 LAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAE---------AVQMGT 191 (307)
T ss_pred HHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCC---------Eeecch
Confidence 346788999999998332 1223458888888999884 44332 3344445543 335666
Q ss_pred HHHH-----hhhhHHHHHHhc
Q 026201 224 NAIL-----TAGFYQEKLQHE 239 (241)
Q Consensus 224 ~~T~-----~s~~Y~~~L~~~ 239 (241)
.... .+..|++.|.+.
T Consensus 192 ~f~~t~Es~~~~~~k~~l~~~ 212 (307)
T TIGR03151 192 RFLCAKECNVHPNYKEKVLKA 212 (307)
T ss_pred HHhcccccCCCHHHHHHHHhC
Confidence 5544 356788887543
No 53
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=86.64 E-value=12 Score=32.26 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=39.5
Q ss_pred HHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCEE
Q 026201 159 VFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRI 218 (241)
Q Consensus 159 ~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~rV 218 (241)
+.|.+.++|.|++ +|+.....++++.+ .++|++-+ ...+++++.+.|. ++|
T Consensus 58 ~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~a~~l~~~g~--------~~i 128 (275)
T cd06295 58 RYLASGRADGVILIGQHDQDPLPERLAE-TGLPFVVWGRPLPGQPYCYVGSDNVGGGRLATEHLLARGR--------RRI 128 (275)
T ss_pred HHHHhCCCCEEEEeCCCCChHHHHHHHh-CCCCEEEECCccCCCCCCEEEECcHHHHHHHHHHHHHCCC--------CeE
Confidence 4566788997765 56544344555532 34454432 2234445555443 389
Q ss_pred EEEecHHH-----HhhhhHHHHHHhcC
Q 026201 219 GVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 219 GLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
++++.+.. .+..-|.+.+++.|
T Consensus 129 ~~i~~~~~~~~~~~r~~gf~~~~~~~~ 155 (275)
T cd06295 129 AFLGGPQDMPEGEERLEGYREALAEAG 155 (275)
T ss_pred EEEcCCCCcchhHHHHHHHHHHHHHcC
Confidence 99875432 22333677776654
No 54
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=86.35 E-value=20 Score=30.55 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=40.7
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~ 216 (241)
.++.|.+.++|.|++........ .+.+.+..++|++-+- ..+++.+.+.|. +
T Consensus 47 ~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~i~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~G~--------~ 118 (269)
T cd06275 47 YLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDWGPEDDFADKIQDNSEEGGYLATRHLIELGH--------R 118 (269)
T ss_pred HHHHHHHcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEecccCCCCCCeEeeCcHHHHHHHHHHHHHCCC--------c
Confidence 34567888999887754332332 2444333456655431 223344555544 3
Q ss_pred EEEEEecHHH-----HhhhhHHHHHHhcC
Q 026201 217 RIGVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 217 rVGLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
+|++++.... -+..-|.+.++++|
T Consensus 119 ~i~~i~~~~~~~~~~~r~~gf~~~~~~~~ 147 (269)
T cd06275 119 RIGCITGPLEKAPAQQRLAGFRRAMAEAG 147 (269)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHcC
Confidence 9999974321 11223666776655
No 55
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.33 E-value=20 Score=30.59 Aligned_cols=33 Identities=6% Similarity=0.077 Sum_probs=19.3
Q ss_pred eEEEEeCCChHH-HHHHHHHHHHHhccC---CCCCEEEec
Q 026201 82 TVGIVGGASVDS-TLNLLGKLVQLSGEE---NDFPFLLCS 117 (241)
Q Consensus 82 ~IGIIGGmGp~A-T~~fy~kI~~~t~~d---~~~~~vi~S 117 (241)
+||+|--. . .-.|+..+.+..... ....++++.
T Consensus 1 ~i~vi~p~---~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 37 (275)
T cd06317 1 TIGYTQNN---VGSHSYQTTYNKAFQAAAEEDGVEVIVLD 37 (275)
T ss_pred CeEEEecc---cCCCHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46776522 2 346788777776642 455666544
No 56
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=86.04 E-value=25 Score=31.48 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=39.3
Q ss_pred HHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201 159 VFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~~~r 217 (241)
+.|...++|.|++.+.. .-..++.+.+..++|++-+ ...+++++.+.|. ++
T Consensus 109 ~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~d~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~G~--------~~ 180 (341)
T PRK10703 109 SMLAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAIIDNAFEGGYLAGRYLIERGH--------RD 180 (341)
T ss_pred HHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCCEEEEecccCCcCCCCeEEECcHHHHHHHHHHHHHCCC--------Cc
Confidence 45777889977765432 2223455544235565432 1123344444443 48
Q ss_pred EEEEecHHH-----HhhhhHHHHHHhcCC
Q 026201 218 IGVLAKNAI-----LTAGFYQEKLQHEDC 241 (241)
Q Consensus 218 VGLLaT~~T-----~~s~~Y~~~L~~~G~ 241 (241)
|++++.... .+..-|.+.++++|+
T Consensus 181 i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi 209 (341)
T PRK10703 181 IGVIPGPLERNTGAGRLAGFMKAMEEANI 209 (341)
T ss_pred EEEEeCCccccchHHHHHHHHHHHHHcCC
Confidence 999964321 122346777777663
No 57
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=85.94 E-value=26 Score=31.63 Aligned_cols=74 Identities=4% Similarity=-0.047 Sum_probs=46.3
Q ss_pred HHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec----------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 160 FLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I----------------------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
.+++.||++|+=+.+++... ...+-+..++|++.. ....++.+.+.+. +
T Consensus 62 Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~--------~ 133 (334)
T cd06356 62 LALQDKVDVVWGGISSASREAIRPIMDRTKQLYFYTTQYEGGVCDRNTFCTGATPAQQFSTLVPYMMEKYG--------K 133 (334)
T ss_pred HHHhCCCCEEEeCcchHHHHHHHHHHHhcCceEEeCCCccCCcccCCEEEeCCCcHHHHHHHHHHHHHccC--------C
Confidence 34567899999888887653 355555667877752 2334555555432 3
Q ss_pred EEEEEecHHHHh---hhhHHHHHHhcCC
Q 026201 217 RIGVLAKNAILT---AGFYQEKLQHEDC 241 (241)
Q Consensus 217 rVGLLaT~~T~~---s~~Y~~~L~~~G~ 241 (241)
||+++..+...- ...+++.+++.|+
T Consensus 134 ~vail~~d~~~g~~~~~~~~~~~~~~G~ 161 (334)
T cd06356 134 KVYTIAADYNFGQISAEWVRKIVEENGG 161 (334)
T ss_pred eEEEECCCchhhHHHHHHHHHHHHHcCC
Confidence 899998754322 3456777777663
No 58
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=85.63 E-value=20 Score=29.89 Aligned_cols=74 Identities=16% Similarity=0.119 Sum_probs=39.9
Q ss_pred HHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201 158 RVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r 217 (241)
++.+...++|.|++........ .+.+. ..++|++.+ ...+++.+.+.|. ++
T Consensus 48 ~~~~~~~~~d~iii~~~~~~~~~~~~~~-~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~ 118 (264)
T cd06267 48 LELLLSRRVDGIILAPSRLDDELLEELA-ALGIPVVLVDRPLDGLGVDSVGIDNRAGAYLAVEHLIELGH--------RR 118 (264)
T ss_pred HHHHHHcCcCEEEEecCCcchHHHHHHH-HcCCCEEEecccccCCCCCEEeeccHHHHHHHHHHHHHCCC--------ce
Confidence 3456777999888765543333 33332 335555444 1234455555443 49
Q ss_pred EEEEecHHH-----HhhhhHHHHHHhcC
Q 026201 218 IGVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 218 VGLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
|+++..... -...-|++.+++.|
T Consensus 119 i~~i~~~~~~~~~~~r~~g~~~~~~~~~ 146 (264)
T cd06267 119 IAFIGGPPDLSTARERLEGYREALEEAG 146 (264)
T ss_pred EEEecCCCccchHHHHHHHHHHHHHHcC
Confidence 999965532 22334566666554
No 59
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=85.54 E-value=1.8 Score=38.83 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii 195 (241)
+.++.++++|||+|+++|- ......++.+.+++|++.+.
T Consensus 160 ~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~~~~P~~~~g 198 (240)
T cd06556 160 ADALAYAPAGADLIVMECV-PVELAKQITEALAIPLAGIG 198 (240)
T ss_pred HHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhCCCCEEEEe
Confidence 4457789999999999998 55567889999999998874
No 60
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=84.92 E-value=23 Score=30.14 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=37.9
Q ss_pred HHHHHhCCcEEEEeC-Cc--hhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCC
Q 026201 159 VFLEKAGARCIVMPC-HL--SHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 159 ~~Le~~Gad~IvIaC-NT--AH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~ 216 (241)
+.|...++|.|++.. ++ ....++++++ .++|++.+- ..+++++.+.. .+..
T Consensus 49 ~~~~~~~vdgii~~~~~~~~~~~~i~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~------~g~~ 121 (273)
T cd06305 49 DQAIAQKVDAIIIQHGRAEVLKPWVKRALD-AGIPVVAFDVDSDNPKVNNTTQDDYSLARLSLDQLVKDL------GGKG 121 (273)
T ss_pred HHHHHcCCCEEEEecCChhhhHHHHHHHHH-cCCCEEEecCCCCCCccceeeechHHHHHHHHHHHHHHh------CCCC
Confidence 345566899888853 22 2233455443 345544431 22444444420 1234
Q ss_pred EEEEEecH----HHHhhhhHHHHHHhcC
Q 026201 217 RIGVLAKN----AILTAGFYQEKLQHED 240 (241)
Q Consensus 217 rVGLLaT~----~T~~s~~Y~~~L~~~G 240 (241)
+|++++.. ...+..-|++.++++|
T Consensus 122 ~i~~i~~~~~~~~~~R~~g~~~~~~~~~ 149 (273)
T cd06305 122 NVGYVNVAGFPPLDRRYDVWQAVLKAYP 149 (273)
T ss_pred CEEEEEccCCchHHHHHHHHHHHHHHCC
Confidence 89999632 2223345677776654
No 61
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=84.90 E-value=12 Score=31.72 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=41.4
Q ss_pred HHHHHHhCCcEEEEeCCchh-hhHHHHhccCCCCeeec-----------------cHHHHHHHHHhcCCCCCCCCCCEEE
Q 026201 158 RVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIG 219 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH-~~~d~l~~~~~vPil~I-----------------id~t~~~i~~~~~k~~~~~~~~rVG 219 (241)
++.|...++|.|++...... ...+.+++. ++|++-+ ...+++++.+.+.+ +|+
T Consensus 48 i~~l~~~~~dgii~~~~~~~~~~~~~~~~~-~ipvv~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~--------~i~ 118 (259)
T cd01542 48 LELLARQKVDGIILLATTITDEHREAIKKL-NVPVVVVGQDYPGISSVVYDDYGAGYELGEYLAQQGHK--------NIA 118 (259)
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHhcC-CCCEEEEeccCCCCCEEEECcHHHHHHHHHHHHHcCCC--------cEE
Confidence 35677889999988654322 234555432 4454422 22355556665443 999
Q ss_pred EEecHH----H--HhhhhHHHHHHhcC
Q 026201 220 VLAKNA----I--LTAGFYQEKLQHED 240 (241)
Q Consensus 220 LLaT~~----T--~~s~~Y~~~L~~~G 240 (241)
+++... + .+..-|++.+++.|
T Consensus 119 ~v~~~~~~~~~~~~r~~gf~~~~~~~~ 145 (259)
T cd01542 119 YLGVSESDIAVGILRKQGYLDALKEHG 145 (259)
T ss_pred EEcCCcccchhHHHHHHHHHHHHHHcC
Confidence 996431 1 22234677777665
No 62
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=84.85 E-value=6.6 Score=35.04 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=70.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCC-CCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEEND-FPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~-~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
.|+-|-.||-......++.++|.....+.+. .+++|.-..+. +.. .....++.+ +.+
T Consensus 109 ~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa---~~~---------------~~~~~~eai----~Ra 166 (243)
T cd00377 109 PKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDA---LLA---------------GEEGLDEAI----ERA 166 (243)
T ss_pred CccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCc---hhc---------------cCCCHHHHH----HHH
Confidence 4556777888888999999999888776522 56666442211 000 011223332 334
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccH-----HHHHHHHHhcCC
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE-----CVAKELKEANMK 208 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid-----~t~~~i~~~~~k 208 (241)
+..+++|||++.+++-+--..+.++.+..+.|++=..- ...+.+.+.|.+
T Consensus 167 ~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~ 221 (243)
T cd00377 167 KAYAEAGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVR 221 (243)
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCe
Confidence 56789999999999987555678888888888765432 368888888875
No 63
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=84.66 E-value=2.4 Score=37.82 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCch
Q 026201 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHLS 176 (241)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTA 176 (241)
.....++...+++.++.|++.|+|.|++-|---
T Consensus 66 ~ls~~~v~~~lq~~i~~le~~G~d~illlCTG~ 98 (221)
T PF07302_consen 66 VLSKKKVEPRLQACIAQLEAQGYDVILLLCTGE 98 (221)
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 345678889999999999999999999999643
No 64
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=84.62 E-value=22 Score=30.08 Aligned_cols=74 Identities=14% Similarity=0.054 Sum_probs=39.7
Q ss_pred HHHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201 158 RVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r 217 (241)
++.|...++|.|++.-..... .++++++ .++|++-+ ....++.+.+.|.+ +
T Consensus 48 ~~~l~~~~~dgiii~~~~~~~~~l~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~--------~ 118 (267)
T cd06283 48 LESLLAYQVDGLIVNPTGNNKELYQRLAK-NGKPVVLVDRKIPELGVDTVTLDNYEAAKEAVDHLIEKGYE--------R 118 (267)
T ss_pred HHHHHHcCcCEEEEeCCCCChHHHHHHhc-CCCCEEEEcCCCCCCCCCEEEeccHHHHHHHHHHHHHcCCC--------c
Confidence 345677889977764332222 2444433 34555443 22345555555543 8
Q ss_pred EEEEecHHH------HhhhhHHHHHHhcC
Q 026201 218 IGVLAKNAI------LTAGFYQEKLQHED 240 (241)
Q Consensus 218 VGLLaT~~T------~~s~~Y~~~L~~~G 240 (241)
|++++.+.. .+..-|++.++++|
T Consensus 119 i~~l~~~~~~~~~~~~r~~g~~~~~~~~~ 147 (267)
T cd06283 119 ILFVTEPLDEISPRMERYEGFKEALAEHG 147 (267)
T ss_pred EEEEecCccccccHHHHHHHHHHHHHHcC
Confidence 999953221 23344777777665
No 65
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=84.46 E-value=22 Score=32.49 Aligned_cols=84 Identities=8% Similarity=-0.070 Sum_probs=47.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (241)
.++||++= |...-.|+..+.+...+. ....+++++.. ...+.+... +
T Consensus 46 t~~Igvv~---p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~-----------------------~~~~~~~q~----~ 95 (343)
T PRK10936 46 AWKLCALY---PHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAG-----------------------GYYNLAKQQ----Q 95 (343)
T ss_pred CeEEEEEe---cCCCchHHHHHHHHHHHHHHHhCCEEEEEcCC-----------------------CCCCHHHHH----H
Confidence 46888774 333456888777776643 44556554411 001122222 3
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHH-hccCCCCeee
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEV-CKGCSVPFLH 193 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l-~~~~~vPil~ 193 (241)
.++.|...++|.|++.+.....+.+.+ ....++|++-
T Consensus 96 ~i~~l~~~~vdgIIl~~~~~~~~~~~l~~~~~giPvV~ 133 (343)
T PRK10936 96 QLEQCVAWGADAILLGAVTPDGLNPDLELQAANIPVIA 133 (343)
T ss_pred HHHHHHHhCCCEEEEeCCChHHhHHHHHHHHCCCCEEE
Confidence 345678889999999876655543443 1234677764
No 66
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=84.19 E-value=23 Score=30.11 Aligned_cols=74 Identities=16% Similarity=0.301 Sum_probs=38.8
Q ss_pred HHHHHHhCCcEEEE-eCCchhh-hHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCC
Q 026201 158 RVFLEKAGARCIVM-PCHLSHI-WHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 158 ~~~Le~~Gad~IvI-aCNTAH~-~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~ 216 (241)
.+.+...++|.|++ ++++... ..+.+++ .++|++-+- ..+++.+.+.|. +
T Consensus 49 ~~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvv~i~~~~~~~~~~~V~~d~~~~g~~a~~~l~~~g~--------~ 119 (270)
T cd01545 49 RALLQRSRVDGVILTPPLSDNPELLDLLDE-AGVPYVRIAPGTPDPDSPCVRIDDRAAAREMTRHLIDLGH--------R 119 (270)
T ss_pred HHHHHHCCCCEEEEeCCCCCccHHHHHHHh-cCCCEEEEecCCCCCCCCeEEeccHHHHHHHHHHHHHCCC--------c
Confidence 35677789997665 4553222 2344432 456655331 234445555443 3
Q ss_pred EEEEEecHH---HHh--hhhHHHHHHhcC
Q 026201 217 RIGVLAKNA---ILT--AGFYQEKLQHED 240 (241)
Q Consensus 217 rVGLLaT~~---T~~--s~~Y~~~L~~~G 240 (241)
+|++++... +.. ..-|++.+++.|
T Consensus 120 ~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~ 148 (270)
T cd01545 120 RIAFIAGPPDHRASAERLEGYRDALAEAG 148 (270)
T ss_pred eEEEEeCCCCchhHHHHHHHHHHHHHHcC
Confidence 899985321 112 223677776655
No 67
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=83.68 E-value=27 Score=29.83 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=41.5
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
.++.|.+.++|.|++..+..... ++++.+ .++|++-+ ...+++.+.+.|.+
T Consensus 47 ~i~~~~~~~vdgii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~-------- 117 (268)
T cd06270 47 AIEFLLERRCDALILHSKALSDDELIELAA-QVPPLVLINRHIPGLADRCIWLDNEQGGYLATEHLIELGHR-------- 117 (268)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHhh-CCCCEEEEeccCCCCCCCeEEECcHHHHHHHHHHHHHCCCc--------
Confidence 34566778999888765443332 455443 34554443 12334555555443
Q ss_pred EEEEEecHH-----HHhhhhHHHHHHhcC
Q 026201 217 RIGVLAKNA-----ILTAGFYQEKLQHED 240 (241)
Q Consensus 217 rVGLLaT~~-----T~~s~~Y~~~L~~~G 240 (241)
+|++++... ..+..-|++.++++|
T Consensus 118 ~i~~i~~~~~~~~~~~R~~gf~~~~~~~~ 146 (268)
T cd06270 118 KIACITGPLTKEDARLRLQGYRDALAEAG 146 (268)
T ss_pred eEEEEeCCcccccHHHHHHHHHHHHHHcC
Confidence 899986532 122334677777765
No 68
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=83.41 E-value=24 Score=32.26 Aligned_cols=83 Identities=11% Similarity=-0.010 Sum_probs=46.9
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (241)
..++||++.. .-.-.||..+.+..... ....+++++. ..+.+.. .
T Consensus 24 ~~~~Ig~i~~---~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~-------------------------~~~~~~~----~ 71 (330)
T PRK10355 24 KEVKIGMAID---DLRLERWQKDRDIFVKKAESLGAKVFVQSA-------------------------NGNEETQ----M 71 (330)
T ss_pred CCceEEEEec---CCCchHHHHHHHHHHHHHHHcCCEEEEECC-------------------------CCCHHHH----H
Confidence 3679999973 22345888888877643 5566666541 1112222 2
Q ss_pred HHHHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeec
Q 026201 156 RKRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~I 194 (241)
+.++.|...++|.|++.+.... .+++.++ ..++|+|-+
T Consensus 72 ~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~-~~~iPvV~i 112 (330)
T PRK10355 72 SQIENMINRGVDVLVIIPYNGQVLSNVIKEAK-QEGIKVLAY 112 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCChhhHHHHHHHHH-HCCCeEEEE
Confidence 3345678889998888764322 3344443 234665543
No 69
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=83.19 E-value=29 Score=29.92 Aligned_cols=72 Identities=11% Similarity=0.034 Sum_probs=40.4
Q ss_pred HHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeecc-----------------HHHHHHHHHhcCCCCCCCCCCEEEEE
Q 026201 160 FLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVS-----------------ECVAKELKEANMKPLEAGSPLRIGVL 221 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Ii-----------------d~t~~~i~~~~~k~~~~~~~~rVGLL 221 (241)
.|...++|.|++.+..... +.+.+++ .++|++-+- ..+++++.+. .+ +|+++
T Consensus 50 ~l~~~~vdgvi~~~~~~~~~~~~~l~~-~~iPvv~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~-~~--------~i~~i 119 (269)
T cd06297 50 TTLAYLTDGLLLASYDLTERLAERRLP-TERPVVLVDAENPRFDSFYLDNRLGGRLAGAYLADF-PG--------RIGAI 119 (269)
T ss_pred HHHhcCCCEEEEecCccChHHHHHHhh-cCCCEEEEccCCCCCCEEEECcHHHHHHHHHHHHHh-CC--------ceEEE
Confidence 4677889988887655443 3355543 356655331 2344555554 44 89988
Q ss_pred ecHH-----------HHhhhhHHHHHHhcCC
Q 026201 222 AKNA-----------ILTAGFYQEKLQHEDC 241 (241)
Q Consensus 222 aT~~-----------T~~s~~Y~~~L~~~G~ 241 (241)
+... ..+..=|++.++++|+
T Consensus 120 ~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~ 150 (269)
T cd06297 120 TVEEEPDRAFRRTVFAERRAGFQQALKDAGR 150 (269)
T ss_pred eCccccccccccccHHHHHHHHHHHHHHcCC
Confidence 6422 1223336777776653
No 70
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=82.85 E-value=14 Score=31.53 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=42.6
Q ss_pred HHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCCEE
Q 026201 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLRI 218 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~rV 218 (241)
.+.|...++|.|++........++.+.+ .++|++.+- ..+++++.+.|.+ +|
T Consensus 51 ~~~l~~~~vdgiii~~~~~~~~~~~l~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~g~~--------~i 121 (268)
T cd06277 51 PSFLEDGKVDGIILLGGISTEYIKEIKE-LGIPFVLVDHYIPNEKADCVLTDNYSGAYAATEYLIEKGHR--------KI 121 (268)
T ss_pred HHHHHHCCCCEEEEeCCCChHHHHHHhh-cCCCEEEEccCCCCCCCCEEEecchHHHHHHHHHHHHCCCC--------cE
Confidence 3457788999888755332333455543 356655542 1233445555443 99
Q ss_pred EEEecHHH-----HhhhhHHHHHHhcCC
Q 026201 219 GVLAKNAI-----LTAGFYQEKLQHEDC 241 (241)
Q Consensus 219 GLLaT~~T-----~~s~~Y~~~L~~~G~ 241 (241)
++++.+.. .+..-|.+.++++|+
T Consensus 122 ~~i~~~~~~~~~~~R~~gf~~~~~~~~~ 149 (268)
T cd06277 122 GFVGDPLYSPSFEERYEGYKKALLDHGI 149 (268)
T ss_pred EEECCCCCCcchHHHHHHHHHHHHHcCC
Confidence 99975542 233347777777653
No 71
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=82.85 E-value=26 Score=29.54 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCCE
Q 026201 158 RVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 158 ~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~r 217 (241)
++.+.+.++|.|++. |......++.+.+ .++|++.+- ..+++++.+.|. ++
T Consensus 47 i~~~~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~ 117 (266)
T cd06278 47 LRQLLQYRVDGVIVTSGTLSSELAEECRR-NGIPVVLINRYVDGPGVDAVCSDNYEAGRLAAELLLAKGC--------RR 117 (266)
T ss_pred HHHHHHcCCCEEEEecCCCCHHHHHHHhh-cCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHCCC--------ce
Confidence 345677899977774 4432233455544 356665541 234455555543 39
Q ss_pred EEEEecHHH-----HhhhhHHHHHHhcC
Q 026201 218 IGVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 218 VGLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
|++++.+.. -+..-|.+.+++.|
T Consensus 118 i~~i~~~~~~~~~~~R~~gf~~~~~~~~ 145 (266)
T cd06278 118 IAFIGGPADTSTSRERERGFRDALAAAG 145 (266)
T ss_pred EEEEcCCCcccchHHHHHHHHHHHHHcC
Confidence 999975321 12233666666654
No 72
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=82.60 E-value=8.5 Score=34.49 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 026201 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR 167 (241)
Q Consensus 88 GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad 167 (241)
|-.-.+..++.+||.....+.+.+.++|.-..+ .++. ....+-+.+++ ++...++|||
T Consensus 113 ~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTD---a~~~------------------~~~~~deaI~R-~~aY~eAGAD 170 (238)
T PF13714_consen 113 GKQLVSPEEMVAKIRAAVDARRDPDFVIIARTD---AFLR------------------AEEGLDEAIER-AKAYAEAGAD 170 (238)
T ss_dssp TT-B--HHHHHHHHHHHHHHHSSTTSEEEEEEC---HHCH------------------HHHHHHHHHHH-HHHHHHTT-S
T ss_pred CCceeCHHHHHHHHHHHHHhccCCeEEEEEecc---cccc------------------CCCCHHHHHHH-HHHHHHcCCC
Confidence 444456678888888777754233355533221 1100 01122333333 3455689999
Q ss_pred EEEEeCCchhhhHHHHhccCCCCeeecc---HHHHHHHHHhcCC
Q 026201 168 CIVMPCHLSHIWHDEVCKGCSVPFLHVS---ECVAKELKEANMK 208 (241)
Q Consensus 168 ~IvIaCNTAH~~~d~l~~~~~vPil~Ii---d~t~~~i~~~~~k 208 (241)
+|.+++-+.-.-..++.+.+++|+.-+. ..+.+++.+.|.+
T Consensus 171 ~ifi~~~~~~~~i~~~~~~~~~Pl~v~~~~~~~~~~eL~~lGv~ 214 (238)
T PF13714_consen 171 MIFIPGLQSEEEIERIVKAVDGPLNVNPGPGTLSAEELAELGVK 214 (238)
T ss_dssp EEEETTSSSHHHHHHHHHHHSSEEEEETTSSSS-HHHHHHTTES
T ss_pred EEEeCCCCCHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHHCCCc
Confidence 9999998666557777777789965444 2678899999875
No 73
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=82.20 E-value=21 Score=32.41 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=16.5
Q ss_pred CCEEEEEecHHHHhhhh---HHHHHHhcC
Q 026201 215 PLRIGVLAKNAILTAGF---YQEKLQHED 240 (241)
Q Consensus 215 ~~rVGLLaT~~T~~s~~---Y~~~L~~~G 240 (241)
.+||++++.+...-... |++.+++.|
T Consensus 138 ~~~v~il~~d~~~g~~~~~~~~~~l~~~G 166 (347)
T cd06336 138 GKKVALLGPNDAYGQPWVAAYKAAWEAAG 166 (347)
T ss_pred CceEEEEccCCchhHHHHHHHHHHHHHcC
Confidence 45999998876544332 455666655
No 74
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=82.17 E-value=3.1 Score=37.27 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh--HHHHhccCCCCeeeccHHHHHHHHHh
Q 026201 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHVSECVAKELKEA 205 (241)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil~Iid~t~~~i~~~ 205 (241)
.+.+.+.+.+ +.+...+||.|+|.|.-.+.+ .+++.+.+++|+|+--.+++=++.+.
T Consensus 165 i~p~~i~~~~----~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~W~~Lr~ 223 (239)
T TIGR02990 165 ISPDCIVEAA----LAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATAWRCLRL 223 (239)
T ss_pred cCHHHHHHHH----HHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
Confidence 3555665544 345678999999999999986 59999999999999888886665553
No 75
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=82.15 E-value=19 Score=30.70 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=20.7
Q ss_pred HHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeee
Q 026201 157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLH 193 (241)
Q Consensus 157 ~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~ 193 (241)
.++.|...++|.|++ +++.....++++.+ .++|++-
T Consensus 47 ~i~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~ 83 (270)
T cd06296 47 WVERLSARRTDGVILVTPELTSAQRAALRR-TGIPFVV 83 (270)
T ss_pred HHHHHHHcCCCEEEEecCCCChHHHHHHhc-CCCCEEE
Confidence 335677889997765 45544444555544 3555444
No 76
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=81.85 E-value=33 Score=30.44 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEecHH----HHh--hhhHHHHHHhcCC
Q 026201 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNA----ILT--AGFYQEKLQHEDC 241 (241)
Q Consensus 196 d~t~~~i~~~~~k~~~~~~~~rVGLLaT~~----T~~--s~~Y~~~L~~~G~ 241 (241)
..+++++.+.|.+ |||+++.+. +.. ..-|++.++++|+
T Consensus 161 ~~a~~~L~~~Ghr--------~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi 204 (311)
T TIGR02405 161 ELLMANLYQQGHR--------HISFLGVDPSDKTTGLMRHNAYLAYCESANL 204 (311)
T ss_pred HHHHHHHHHcCCC--------cEEEEccCcccchhHHHHHHHHHHHHHHcCC
Confidence 3466777777765 999997421 222 2338888888774
No 77
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=81.61 E-value=3.1 Score=39.47 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=31.9
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh--HHHHhccCCCCee
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFL 192 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil 192 (241)
-++.|+++|||.+=++|++.-.. +.+|++++++|++
T Consensus 41 QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLV 78 (361)
T COG0821 41 QIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLV 78 (361)
T ss_pred HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEE
Confidence 44679999999999999998875 5999999999986
No 78
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=81.20 E-value=28 Score=28.36 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=39.6
Q ss_pred HHHHHHhCCcEEEEeCCc-hhh-hHHHHhccCCCCeeec-----------------------cHHHHHHHHHhcCCCCCC
Q 026201 158 RVFLEKAGARCIVMPCHL-SHI-WHDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPLEA 212 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNT-AH~-~~d~l~~~~~vPil~I-----------------------id~t~~~i~~~~~k~~~~ 212 (241)
++.|...++|.|+++-.. .-. ..+.+ ...++|+|.+ .+..++.+.+.+.
T Consensus 51 ~~~~~~~~~d~ii~~~~~~~~~~~~~~~-~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 124 (269)
T cd01391 51 LRDLIQQGVDGIIGPPSSSSALAVVELA-AAAGIPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAAEYLAEKGW----- 124 (269)
T ss_pred HHHHHHcCCCEEEecCCCHHHHHHHHHH-HHcCCcEEEecCCCCccCCCceEEEEcCCcHHHHHHHHHHHHHhCC-----
Confidence 345666688877765332 222 22332 2345665543 2334555666543
Q ss_pred CCCCEEEEEecHHH----HhhhhHHHHHHhcC
Q 026201 213 GSPLRIGVLAKNAI----LTAGFYQEKLQHED 240 (241)
Q Consensus 213 ~~~~rVGLLaT~~T----~~s~~Y~~~L~~~G 240 (241)
++|++++.+.. .....|++.+++.|
T Consensus 125 ---~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 153 (269)
T cd01391 125 ---KRVALIYGDDGAYGRERLEGFKAALKKAG 153 (269)
T ss_pred ---ceEEEEecCCcchhhHHHHHHHHHHHhcC
Confidence 39999987662 22344566665554
No 79
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.86 E-value=35 Score=29.20 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=40.8
Q ss_pred HHHHHHhCCcEEEE-eCCch-hhhHHHHhccCCCCeeecc------------------HHHHHHHHHhcCCCCCCCCCCE
Q 026201 158 RVFLEKAGARCIVM-PCHLS-HIWHDEVCKGCSVPFLHVS------------------ECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 158 ~~~Le~~Gad~IvI-aCNTA-H~~~d~l~~~~~vPil~Ii------------------d~t~~~i~~~~~k~~~~~~~~r 217 (241)
++.|...++|.|++ +|+.. ..+.+.+++ .++|++-+- ..+++.+.+.|.+ +
T Consensus 48 i~~l~~~~vdgii~~~~~~~~~~~~~~~~~-~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G~~--------~ 118 (269)
T cd06281 48 LRSFEQRRMDGIIIAPGDERDPELVDALAS-LDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISLGHR--------R 118 (269)
T ss_pred HHHHHHcCCCEEEEecCCCCcHHHHHHHHh-CCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHHCCCc--------E
Confidence 34577789996665 56432 234455544 245544331 2344555555543 8
Q ss_pred EEEEecHH-----HHhhhhHHHHHHhcC
Q 026201 218 IGVLAKNA-----ILTAGFYQEKLQHED 240 (241)
Q Consensus 218 VGLLaT~~-----T~~s~~Y~~~L~~~G 240 (241)
|+++++.. ..+..=|.+.++++|
T Consensus 119 i~~l~~~~~~~~~~~R~~Gf~~~~~~~~ 146 (269)
T cd06281 119 IALVGGGSNTRPGRERLEGYKAAFAAAG 146 (269)
T ss_pred EEEecCccccccHHHHHHHHHHHHHHcC
Confidence 99997642 122233677777765
No 80
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=80.75 E-value=35 Score=29.18 Aligned_cols=36 Identities=8% Similarity=-0.045 Sum_probs=20.5
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
.++.|...++|.|++.. +....... ....++|++-+
T Consensus 52 ~~~~l~~~~vd~iI~~~-~~~~~~~~-~~~~~iPvV~~ 87 (281)
T cd06325 52 IARKFVADKPDLIVAIA-TPAAQAAA-NATKDIPIVFT 87 (281)
T ss_pred HHHHHHhcCCCEEEEcC-cHHHHHHH-HcCCCCCEEEE
Confidence 33557778999888864 32222222 33456777654
No 81
>PRK09492 treR trehalose repressor; Provisional
Probab=80.71 E-value=31 Score=30.39 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=40.4
Q ss_pred HHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec-----------------cHHHHHHHHHhcCCCCCCCCCCEEEE
Q 026201 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------SECVAKELKEANMKPLEAGSPLRIGV 220 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I-----------------id~t~~~i~~~~~k~~~~~~~~rVGL 220 (241)
++.|...++|.|++...+. .-.+.+.+ ...|++-+ +..+++++.+.|.+ +|++
T Consensus 111 ~~~l~~~~vdgiIi~~~~~-~~~~~l~~-~~~pvv~i~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~--------~I~~ 180 (315)
T PRK09492 111 LGVLKRRNVDGVILFGFTG-ITEEMLAP-WQDKLVLLARDAKGFSSVCYDDEGAIKLLMQRLYDQGHR--------HISY 180 (315)
T ss_pred HHHHHhcCCCEEEEeCCCc-ccHHHHHh-cCCCEEEEeccCCCCcEEEECcHHHHHHHHHHHHHcCCC--------eEEE
Confidence 3567788899777643221 11233322 12233222 22356667776655 9999
Q ss_pred EecH-H-----HHhhhhHHHHHHhcCC
Q 026201 221 LAKN-A-----ILTAGFYQEKLQHEDC 241 (241)
Q Consensus 221 LaT~-~-----T~~s~~Y~~~L~~~G~ 241 (241)
++.. . ..+..-|++.++++|+
T Consensus 181 i~~~~~~~~~~~~R~~Gf~~al~~~g~ 207 (315)
T PRK09492 181 LGVDHSDVTTGKRRHQAYLAFCKQHKL 207 (315)
T ss_pred EcCCcccchhHHHHHHHHHHHHHHcCC
Confidence 9732 1 1233458888888774
No 82
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=80.29 E-value=35 Score=28.89 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=38.9
Q ss_pred HHHHHHhCCcEEEEeCCc-hhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201 158 RVFLEKAGARCIVMPCHL-SHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNT-AH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~r 217 (241)
++.|.+.++|.|++...+ .-..++++++. ++|++-+ ...+++.+.+.|. ++
T Consensus 48 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~-~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~--------~~ 118 (265)
T cd06299 48 LDNLLSQRVDGIIVVPHEQSAEQLEDLLKR-GIPVVFVDREITGSPIPFVTSDPQPGMTEAVSLLVALGH--------KK 118 (265)
T ss_pred HHHHHhcCCCEEEEcCCCCChHHHHHHHhC-CCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCC--------Cc
Confidence 356778899977775432 22234555442 4554322 1123344444443 38
Q ss_pred EEEEecHHH-----HhhhhHHHHHHhcC
Q 026201 218 IGVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 218 VGLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
|++++...+ .+..-|.+.++++|
T Consensus 119 I~~i~~~~~~~~~~~R~~gf~~~~~~~~ 146 (265)
T cd06299 119 IGYISGPQDTSTGRERLEAFRQACASLG 146 (265)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCC
Confidence 998843222 22244777777766
No 83
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=79.93 E-value=53 Score=30.73 Aligned_cols=74 Identities=8% Similarity=0.005 Sum_probs=44.2
Q ss_pred HHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec----------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 160 FLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I----------------------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
.+++-||++|+=+.++.... ...+-+..++|++.. ...+++.+.+... +
T Consensus 63 li~~d~v~~viG~~~S~~~~A~~~~~~~~~~~~i~~~~~~~~~~~~~~Fr~~~~~~~~~~~~~~~~~~~~g--------~ 134 (374)
T TIGR03669 63 LLNRDKVDALWAGYSSATREAIRPIIDRNEQLYFYTNQYEGGVCDEYTFAVGATARQQLGTVVPYMVEEYG--------K 134 (374)
T ss_pred HHHhCCCCEEEcCCchHHHHHHHHHHHhcCceEEcCcccccccCCCCEEEcCCChHHHHHHHHHHHHHcCC--------C
Confidence 33456899988777766553 344545567776631 1233445554322 3
Q ss_pred EEEEEecHHHHh---hhhHHHHHHhcCC
Q 026201 217 RIGVLAKNAILT---AGFYQEKLQHEDC 241 (241)
Q Consensus 217 rVGLLaT~~T~~---s~~Y~~~L~~~G~ 241 (241)
||++++.+...- ...+++.+++.|+
T Consensus 135 ~va~l~~d~~~g~~~~~~~~~~~~~~G~ 162 (374)
T TIGR03669 135 KIYTIAADYNFGQLSADWVRVIAKENGA 162 (374)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHHcCC
Confidence 899999876543 2456777777663
No 84
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.49 E-value=34 Score=28.99 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=38.1
Q ss_pred HHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCEE
Q 026201 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRI 218 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~rV 218 (241)
++.|.+.++|.|++............ ..-++|++-+ ...+++++.+.|.+ +|
T Consensus 49 ~~~l~~~~~dgiii~~~~~~~~~~~~-~~~~ipvv~~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~g~~--------~i 119 (269)
T cd06288 49 VEALLDHRVDGIIYATMYHREVTLPP-ELLSVPTVLLNCYDADGALPSVVPDEEQGGYDATRHLLAAGHR--------RI 119 (269)
T ss_pred HHHHHHcCCCEEEEecCCCChhHHHH-HhcCCCEEEEecccCCCCCCeEEEccHHHHHHHHHHHHHcCCc--------eE
Confidence 35577889997777643222221212 1234554432 23344555555543 99
Q ss_pred EEEecHHH-----HhhhhHHHHHHhcC
Q 026201 219 GVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 219 GLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
++++.+.. .+..-|.+.++++|
T Consensus 120 ~~l~~~~~~~~~~~R~~gf~~~~~~~~ 146 (269)
T cd06288 120 AFINGEPWMLAAKDRLKGYRQALAEAG 146 (269)
T ss_pred EEEeCCccchhHHHHHHHHHHHHHHcC
Confidence 99964432 12233566666655
No 85
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.01 E-value=41 Score=28.88 Aligned_cols=37 Identities=11% Similarity=-0.022 Sum_probs=20.6
Q ss_pred HHHHHHHhCCcEEEEeC-Cc--hhhhHHHHhccCCCCeeec
Q 026201 157 KRVFLEKAGARCIVMPC-HL--SHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaC-NT--AH~~~d~l~~~~~vPil~I 194 (241)
.++.|...++|.|++.. +. ....++.+++ .++|++-+
T Consensus 49 ~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~-~~ipvV~~ 88 (271)
T cd06312 49 LIEAAIAAKPDGIVVTIPDPDALDPAIKRAVA-AGIPVISF 88 (271)
T ss_pred HHHHHHHhCCCEEEEeCCChHHhHHHHHHHHH-CCCeEEEe
Confidence 34567788999877743 32 1233455543 35665554
No 86
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=78.77 E-value=47 Score=29.44 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=41.2
Q ss_pred HHHHH-HhCCcEEEEeCCchhhh--HHHHhccCCCCeeecc--------------------------HHHHHHHHHhcCC
Q 026201 158 RVFLE-KAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHVS--------------------------ECVAKELKEANMK 208 (241)
Q Consensus 158 ~~~Le-~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil~Ii--------------------------d~t~~~i~~~~~k 208 (241)
++.|. +.+++.|+.++.+.... .+.+ +..++|+|... ...++.+.+.+.
T Consensus 57 ~~~lv~~~~v~~iig~~~s~~~~~~~~~~-~~~~ip~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~- 134 (336)
T cd06360 57 ARKLIEQDKVDVVVGPVHSGEALAMVKVL-REPGTPLINPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGY- 134 (336)
T ss_pred HHHHHHHhCCcEEEccCccHhHHHHHHHH-HhcCceEEecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCC-
Confidence 34454 56899988887654432 2333 33456665431 123444544443
Q ss_pred CCCCCCCCEEEEEecHHHHh---hhhHHHHHHhcCC
Q 026201 209 PLEAGSPLRIGVLAKNAILT---AGFYQEKLQHEDC 241 (241)
Q Consensus 209 ~~~~~~~~rVGLLaT~~T~~---s~~Y~~~L~~~G~ 241 (241)
++|+++..+.... ..-|++.+++.|+
T Consensus 135 -------~~v~~l~~~~~~g~~~~~~~~~~~~~~G~ 163 (336)
T cd06360 135 -------KKVVTVAWDYAFGYEVVEGFKEAFTEAGG 163 (336)
T ss_pred -------CeEEEEeccchhhHHHHHHHHHHHHHcCC
Confidence 4899997654332 2346677777663
No 87
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=78.29 E-value=42 Score=28.67 Aligned_cols=75 Identities=11% Similarity=0.091 Sum_probs=40.4
Q ss_pred HHHHHHHhCCcEEEEeCCch-----h-hhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCC
Q 026201 157 KRVFLEKAGARCIVMPCHLS-----H-IWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLE 211 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTA-----H-~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~ 211 (241)
.++.|.+.++|.|++.-.+. . .+++++.+ .++|++-+- ..+++.+.+.|.+
T Consensus 47 ~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~G~~--- 122 (273)
T cd01541 47 CLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEK-LGIPYVFINASYEELNFPSLVLDDEKGGYKATEYLIELGHR--- 122 (273)
T ss_pred HHHHHHHcCCCEEEEeccccccccccHHHHHHHHH-CCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHcCCc---
Confidence 34567788999888753221 1 23444432 345655331 2345566665544
Q ss_pred CCCCCEEEEEecH----HHHhhhhHHHHHHhcC
Q 026201 212 AGSPLRIGVLAKN----AILTAGFYQEKLQHED 240 (241)
Q Consensus 212 ~~~~~rVGLLaT~----~T~~s~~Y~~~L~~~G 240 (241)
+|++++.. .+.+..-|++.++++|
T Consensus 123 -----~i~~l~~~~~~~~~~r~~g~~~~l~~~~ 150 (273)
T cd01541 123 -----KIAGIFKADDLQGVKRMKGFIKAYREHG 150 (273)
T ss_pred -----CEEEecCCCcccHHHHHHHHHHHHHHcC
Confidence 88877642 2233334677776665
No 88
>PRK10200 putative racemase; Provisional
Probab=78.08 E-value=4.6 Score=35.71 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHH
Q 026201 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKE 204 (241)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~ 204 (241)
...+.+.+.++.|.+.|||.|++.|-=.....+.+. ..+|+++-.+..++++.+
T Consensus 173 ~~~~~l~~~l~~l~~~g~d~vILGCTelpll~~~~~--~~~~~iD~~~~la~~~v~ 226 (230)
T PRK10200 173 ASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEER--SVLPVFDTAAIHAEDAVA 226 (230)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCcCHHHhCCccc--CCCCeEchHHHHHHHHHH
Confidence 344556677778888899999999984444445443 346888888888877665
No 89
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=76.92 E-value=14 Score=32.88 Aligned_cols=90 Identities=13% Similarity=0.035 Sum_probs=49.5
Q ss_pred hhccCCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHH
Q 026201 76 LLNQANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL 154 (241)
Q Consensus 76 ~~~~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l 154 (241)
+|...++||+|||+-.....+|..-..+....- ..+.++..- .+ ...|.++ -
T Consensus 116 ~~t~t~kVG~I~g~~~~~~~~~~~gF~~G~~~~~p~~~v~~~~--------~g---------------~~~D~~~----a 168 (258)
T cd06353 116 KMTKTNKVGYVAAFPIPEVVRGINAFALGARSVNPDATVKVIW--------TG---------------SWFDPAK----E 168 (258)
T ss_pred HhhcCCcEEEEcCcccHHHHHHHHHHHHHHHHHCCCcEEEEEE--------ec---------------CCCCcHH----H
Confidence 345678999999997777777765555544422 222222210 00 0112222 2
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
.+.++.|.+.|||+|. ++.+..-.++..++. ++++|+.
T Consensus 169 ~~~a~~l~~~G~DvI~-~~~~~~g~~~aa~~~-g~~~IG~ 206 (258)
T cd06353 169 KEAALALIDQGADVIY-QHTDSPGVIQAAEEK-GVYAIGY 206 (258)
T ss_pred HHHHHHHHHCCCcEEE-ecCCChHHHHHHHHh-CCEEEee
Confidence 3445667789999554 444555556666553 5666664
No 90
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=76.79 E-value=27 Score=31.61 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCcEEEEeCCchh------------------------------hhHHHHhccCCCCeeeccHH----HHH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSH------------------------------IWHDEVCKGCSVPFLHVSEC----VAK 200 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH------------------------------~~~d~l~~~~~vPil~Iid~----t~~ 200 (241)
.+.++.|+++|+|.|++- ||.+ .+..++++.+++||+..... .+.
T Consensus 172 ~~~a~~l~~~G~d~i~v~-nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~ 250 (300)
T TIGR01037 172 TEIAKAAEEAGADGLTLI-NTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDAL 250 (300)
T ss_pred HHHHHHHHHcCCCEEEEE-ccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHH
Confidence 345578999999999874 2221 23466778889999975432 233
Q ss_pred HHHHhcCCCCCCCCCCEEEEEecHHHHhhhhH
Q 026201 201 ELKEANMKPLEAGSPLRIGVLAKNAILTAGFY 232 (241)
Q Consensus 201 ~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y 232 (241)
++.+.|.+ .--+||.....-.++
T Consensus 251 ~~l~~GAd---------~V~igr~~l~~p~~~ 273 (300)
T TIGR01037 251 EFLMAGAS---------AVQVGTAVYYRGFAF 273 (300)
T ss_pred HHHHcCCC---------ceeecHHHhcCchHH
Confidence 33345543 334666655444443
No 91
>PRK09526 lacI lac repressor; Reviewed
Probab=76.74 E-value=26 Score=31.27 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=41.7
Q ss_pred HHHHHHhCCcEEEEeCCchhhhHHHHh-ccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCCEE
Q 026201 158 RVFLEKAGARCIVMPCHLSHIWHDEVC-KGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRI 218 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~-~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~rV 218 (241)
++.|...++|.|++...........+. ...++|++-+ ...+++++.+.|.+ +|
T Consensus 113 l~~l~~~~vdGiii~~~~~~~~~~~~~~~~~~iPvV~~d~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~--------~I 184 (342)
T PRK09526 113 VNELLAQRVSGVIINVPLEDADAEKIVADCADVPCLFLDVSPQSPVNSVSFDPEDGTRLGVEHLVELGHQ--------RI 184 (342)
T ss_pred HHHHHhcCCCEEEEecCCCcchHHHHHhhcCCCCEEEEeccCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------eE
Confidence 356778899988883111122223332 2235555432 12345566666554 99
Q ss_pred EEEecHH-----HHhhhhHHHHHHhcCC
Q 026201 219 GVLAKNA-----ILTAGFYQEKLQHEDC 241 (241)
Q Consensus 219 GLLaT~~-----T~~s~~Y~~~L~~~G~ 241 (241)
++++... ..+..-|++.++++|+
T Consensus 185 ~~l~g~~~~~~~~~R~~Gf~~al~~~gi 212 (342)
T PRK09526 185 ALLAGPESSVSARLRLAGWLEYLTDYQL 212 (342)
T ss_pred EEEeCCCccccHHHHHHHHHHHHHHcCC
Confidence 9996422 2233347888887764
No 92
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=76.51 E-value=55 Score=29.08 Aligned_cols=76 Identities=13% Similarity=0.036 Sum_probs=42.9
Q ss_pred HHHHHH-hCCcEEEEeCCchhhh-H-HHHhccCCCCeeecc--------------------------HHHHHHHHHhcCC
Q 026201 158 RVFLEK-AGARCIVMPCHLSHIW-H-DEVCKGCSVPFLHVS--------------------------ECVAKELKEANMK 208 (241)
Q Consensus 158 ~~~Le~-~Gad~IvIaCNTAH~~-~-d~l~~~~~vPil~Ii--------------------------d~t~~~i~~~~~k 208 (241)
++.|.. .+|++|+=+..+.-.. . ..+.+..++|+|... ...++.+.+.+.
T Consensus 59 a~~li~~~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~- 137 (312)
T cd06346 59 ATKLVNVDGVPGIVGAACSGVTIAALTSVAVPNGVVMISPSSTSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGY- 137 (312)
T ss_pred HHHHHhhcCCCEEEccccchhhHhhhhhhhccCCcEEEecCCCCccceecCCCceEEEecCCcHHHHHHHHHHHHHcCC-
Confidence 344544 5899998875554432 3 556666677777521 122333444333
Q ss_pred CCCCCCCCEEEEEecHHHHhh---hhHHHHHHhcCC
Q 026201 209 PLEAGSPLRIGVLAKNAILTA---GFYQEKLQHEDC 241 (241)
Q Consensus 209 ~~~~~~~~rVGLLaT~~T~~s---~~Y~~~L~~~G~ 241 (241)
+||+++..+.-.-. ..+++.+++.|+
T Consensus 138 -------~~vail~~~~~~g~~~~~~~~~~~~~~G~ 166 (312)
T cd06346 138 -------KSVATTYINNDYGVGLADAFTKAFEALGG 166 (312)
T ss_pred -------CeEEEEEccCchhhHHHHHHHHHHHHcCC
Confidence 49999986554322 346666766653
No 93
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=76.44 E-value=45 Score=30.02 Aligned_cols=75 Identities=21% Similarity=0.153 Sum_probs=43.0
Q ss_pred HHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec--------------------------cHHHHHHHHHhcCCCCC
Q 026201 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV--------------------------SECVAKELKEANMKPLE 211 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I--------------------------id~t~~~i~~~~~k~~~ 211 (241)
+.+++.||++|+=|..+.-.. ...+.+..++|+|.. ...+++.+++.+
T Consensus 60 ~l~~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~~----- 134 (350)
T cd06366 60 DLLENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFG----- 134 (350)
T ss_pred HHhccCCceEEECCCcHHHHHHHHHHhhcCCeeEEeccCCCccccccccCCceEEcccchHhHHHHHHHHHHHCC-----
Confidence 334455898888876655443 345666677777752 122333344333
Q ss_pred CCCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201 212 AGSPLRIGVLAKNAIL---TAGFYQEKLQHEDC 241 (241)
Q Consensus 212 ~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~ 241 (241)
.+||+++..+... ....+++.+++.|+
T Consensus 135 ---~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~ 164 (350)
T cd06366 135 ---WRRVATIYEDDDYGSGGLPDLVDALQEAGI 164 (350)
T ss_pred ---CcEEEEEEEcCcccchhHHHHHHHHHHcCC
Confidence 3499999765442 23456666766663
No 94
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.68 E-value=24 Score=30.66 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=32.0
Q ss_pred HHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCCEEE
Q 026201 159 VFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRIG 219 (241)
Q Consensus 159 ~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~rVG 219 (241)
+.+.+.++|.|++ ++.......+++++ .++|++-+ ...+++.+.+.|.+ +|+
T Consensus 50 ~~~~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~v~~d~~~~g~~~~~~L~~~g~~--------~i~ 120 (283)
T cd06279 50 ALVVSALVDGFIVYGVPRDDPLVAALLR-RGLPVVVVDQPLPPGVPSVGIDDRAAAREAARHLLDLGHR--------RIG 120 (283)
T ss_pred HHHHhcCCCEEEEeCCCCChHHHHHHHH-cCCCEEEEecCCCCCCCEEeeCcHHHHHHHHHHHHHcCCC--------cEE
Confidence 4567788986665 44333344455543 34554422 22345556665544 999
Q ss_pred EEecH
Q 026201 220 VLAKN 224 (241)
Q Consensus 220 LLaT~ 224 (241)
+++++
T Consensus 121 ~i~~~ 125 (283)
T cd06279 121 ILGLR 125 (283)
T ss_pred EecCc
Confidence 99764
No 95
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=75.42 E-value=47 Score=27.76 Aligned_cols=24 Identities=4% Similarity=0.101 Sum_probs=15.7
Q ss_pred CEEEEEecHH-----HHhhhhHHHHHHhc
Q 026201 216 LRIGVLAKNA-----ILTAGFYQEKLQHE 239 (241)
Q Consensus 216 ~rVGLLaT~~-----T~~s~~Y~~~L~~~ 239 (241)
++|++++.+. .....-|++.++++
T Consensus 122 ~~i~~i~~~~~~~~~~~r~~gf~~~~~~~ 150 (267)
T cd01536 122 GKVAIIEGPPGSSNAQERVKGFRDALKEY 150 (267)
T ss_pred ceEEEEEcccccchHHHHHHHHHHHHHhC
Confidence 4999997643 23444577777776
No 96
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=75.19 E-value=21 Score=30.49 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=51.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 81 NTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 81 k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
+.+||| ||..|-.+..++-.+...+= -..+.-+.|-- ++ ++.+.++ ++
T Consensus 3 ~~V~II--MGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAH----------RT---------------Pe~m~~y----a~ 51 (162)
T COG0041 3 PKVGII--MGSKSDWDTMKKAAEILEEFGVPYEVRVVSAH----------RT---------------PEKMFEY----AE 51 (162)
T ss_pred ceEEEE--ecCcchHHHHHHHHHHHHHcCCCeEEEEEecc----------CC---------------HHHHHHH----HH
Confidence 479999 88898889998887777653 12223333411 11 2334443 45
Q ss_pred HHHHhCCcEEE-EeCCchhhhHHHHhccCCCCeeeccH
Q 026201 160 FLEKAGARCIV-MPCHLSHIWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 160 ~Le~~Gad~Iv-IaCNTAH~~~d~l~~~~~vPil~Iid 196 (241)
.-++.|.++|+ .+--.||.- --+...+.+|+|++.-
T Consensus 52 ~a~~~g~~viIAgAGgAAHLP-GmvAa~T~lPViGVPv 88 (162)
T COG0041 52 EAEERGVKVIIAGAGGAAHLP-GMVAAKTPLPVIGVPV 88 (162)
T ss_pred HHHHCCCeEEEecCcchhhcc-hhhhhcCCCCeEeccC
Confidence 67889998554 444445532 4456667888888743
No 97
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=75.08 E-value=43 Score=28.23 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=39.2
Q ss_pred HHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 157 ~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
.++.+.+.++|.|++ +++..-.....+.+ ++|++.+ ...+++.+.+.|. +
T Consensus 47 ~~~~~~~~~vdgiii~~~~~~~~~~~~~~~--~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~ 116 (267)
T cd06284 47 YLDLLRRKQADGIILLDGSLPPTALTALAK--LPPIVQACEYIPGLAVPSVSIDNVAAARLAVDHLISLGH--------R 116 (267)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHhc--CCCEEEEecccCCCCcceEEecccHHHHHHHHHHHHcCC--------c
Confidence 345788889997776 55422222233322 5565533 1234455555443 3
Q ss_pred EEEEEecHHH-----HhhhhHHHHHHhcC
Q 026201 217 RIGVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 217 rVGLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
+|++++.... -+..-|++.++++|
T Consensus 117 ~i~~l~~~~~~~~~~~r~~gf~~~~~~~~ 145 (267)
T cd06284 117 RIALITGPRDNPLARDRLEGYRQALAEAG 145 (267)
T ss_pred eEEEEcCCccchhHHHHHHHHHHHHHHcC
Confidence 8999965321 12334566676665
No 98
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=75.08 E-value=7.8 Score=35.48 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii 195 (241)
+.+...+ +.+.++.||++||-.|++=|-. +....+|.+.++||.|+|.
T Consensus 157 ~~~~a~~-l~~~A~ale~AGaf~ivlE~vp-~~la~~It~~l~IPtIGIG 204 (261)
T PF02548_consen 157 TAEEAEK-LLEDAKALEEAGAFAIVLECVP-AELAKAITEALSIPTIGIG 204 (261)
T ss_dssp SHHHHHH-HHHHHHHHHHHT-SEEEEESBB-HHHHHHHHHHSSS-EEEES
T ss_pred CHHHHHH-HHHHHHHHHHcCccEEeeecCH-HHHHHHHHHhCCCCEEecC
Confidence 3344444 5567788999999999999865 4566899999999999984
No 99
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=74.90 E-value=33 Score=29.42 Aligned_cols=77 Identities=9% Similarity=0.048 Sum_probs=40.6
Q ss_pred HHHHHHHhCCcEEEEeCCch---hhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVMPCHLS---HIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGS 214 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTA---H~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~ 214 (241)
.++.|...++|.|++..... -..++++++ .++|++.+ ...+++++.+.. ..
T Consensus 49 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~------~g 121 (275)
T cd06320 49 IAENMINKGYKGLLFSPISDVNLVPAVERAKK-KGIPVVNVNDKLIPNATAFVGTDNKANGVRGAEWIIDKL------AE 121 (275)
T ss_pred HHHHHHHhCCCEEEECCCChHHhHHHHHHHHH-CCCeEEEECCCCCCccceEEecCcHHHHHHHHHHHHHHh------CC
Confidence 34567788999877643222 123344432 45665443 223444555541 01
Q ss_pred CCEEEEEecH-----HHHhhhhHHHHHHhc-C
Q 026201 215 PLRIGVLAKN-----AILTAGFYQEKLQHE-D 240 (241)
Q Consensus 215 ~~rVGLLaT~-----~T~~s~~Y~~~L~~~-G 240 (241)
.++|+++... ...+..-|.+.++++ |
T Consensus 122 ~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~ 153 (275)
T cd06320 122 GGKVAIIEGKAGAFAAEQRTEGFTEAIKKASG 153 (275)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHhhCCC
Confidence 2499998642 122234477778776 5
No 100
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=74.65 E-value=6.7 Score=37.48 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=32.0
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh--HHHHhccCCCCee
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFL 192 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil 192 (241)
-++.|+++|||.+=+++++.... +.+|++++++|++
T Consensus 47 Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlv 84 (360)
T PRK00366 47 QIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLV 84 (360)
T ss_pred HHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEE
Confidence 34679999999999999999986 5999999999986
No 101
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=74.47 E-value=64 Score=28.84 Aligned_cols=77 Identities=8% Similarity=-0.101 Sum_probs=45.6
Q ss_pred HHHHHHHh-CCcEEEEeCCchhhh-HHHHhccCCCCeeecc----------------------HHHHHHHHHhcCCCCCC
Q 026201 157 KRVFLEKA-GARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS----------------------ECVAKELKEANMKPLEA 212 (241)
Q Consensus 157 ~~~~Le~~-Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Ii----------------------d~t~~~i~~~~~k~~~~ 212 (241)
.++.|.+. ||+.|+=+.++.... ...+.+..++|+|... +..++.+.+.+.
T Consensus 58 ~a~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----- 132 (333)
T cd06331 58 AARRLIRDDKVDAVFGCYTSASRKAVLPVVERGRGLLFYPTQYEGGECSPNVFYTGATPNQQLLPLIPYLMEKYG----- 132 (333)
T ss_pred HHHHHHhccCCcEEEecccHHHHHHHHHHHHhcCceEEeCCCCCCCcCCCCeEEccCChHHhHHHHHHHHHHhcC-----
Confidence 34556655 888888876665543 3444455567766521 124444554433
Q ss_pred CCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201 213 GSPLRIGVLAKNAIL---TAGFYQEKLQHEDC 241 (241)
Q Consensus 213 ~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~ 241 (241)
+||++|+.+... -...+++.+++.|+
T Consensus 133 ---~~v~il~~d~~~g~~~~~~~~~~~~~~G~ 161 (333)
T cd06331 133 ---KRFYLIGSDYVWPRESNRIARALLEELGG 161 (333)
T ss_pred ---CeEEEECCCchhHHHHHHHHHHHHHHcCC
Confidence 499999876543 23567777777663
No 102
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=74.22 E-value=10 Score=36.84 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHH
Q 026201 143 VQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAK 200 (241)
Q Consensus 143 ~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~ 200 (241)
..++++...+..++.++.|++.|+|.||.+|.+-...+...-...+++++|+.+-+.+
T Consensus 308 ~~G~~~~~~~~~~~ni~~~~~~~~~~IVt~c~~C~~~l~~~y~~~~~~v~~i~e~L~~ 365 (486)
T PRK06259 308 RTGQTDVAEELKKKNLEIFNKLDVDTVVTICAGCGSTLKNDYKEKEFNVMDITEVLVE 365 (486)
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCCEEEECCchHHHHHHHhccccccceeeHHHHHHH
Confidence 4568888888888889999999999999999987665543222246788998776665
No 103
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=73.87 E-value=7.4 Score=36.97 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh--HHHHhccCCCCee
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFL 192 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil 192 (241)
-++.|+++|||.+=+++++.... +.+|++.+++|++
T Consensus 39 QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlV 76 (346)
T TIGR00612 39 QIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLV 76 (346)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEE
Confidence 34679999999999999999986 5999999999986
No 104
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=73.74 E-value=55 Score=27.79 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=42.6
Q ss_pred HHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeecc-----------------HHHHHHHHHhcCCCCCCCCCCEE
Q 026201 157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHVS-----------------ECVAKELKEANMKPLEAGSPLRI 218 (241)
Q Consensus 157 ~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~Ii-----------------d~t~~~i~~~~~k~~~~~~~~rV 218 (241)
.++.|...++|.|++ +|.......+++++ .++|++-+- ..+++.+.+.|.+ +|
T Consensus 47 ~i~~l~~~~~dgiii~~~~~~~~~~~~~~~-~~iPvv~~~~~~~~~~~V~~d~~~ag~~a~~~L~~~g~~--------~i 117 (265)
T cd06285 47 AIEMLLDRRVDGLILGDARSDDHFLDELTR-RGVPFVLVLRHAGTSPAVTGDDVLGGRLATRHLLDLGHR--------RI 117 (265)
T ss_pred HHHHHHHcCCCEEEEecCCCChHHHHHHHH-cCCCEEEEccCCCCCCEEEeCcHHHHHHHHHHHHHCCCc--------cE
Confidence 345678899996665 44434444555543 355655321 2356666666544 89
Q ss_pred EEEecHHH-----HhhhhHHHHHHhcC
Q 026201 219 GVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 219 GLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
++++.+.. -+..=|.+.+++.|
T Consensus 118 ~~i~~~~~~~~~~~R~~Gf~~~~~~~~ 144 (265)
T cd06285 118 AVLAGPDYASTARDRLAGFRAALAEAG 144 (265)
T ss_pred EEEeCCcccccHHHHHHHHHHHHHHcC
Confidence 99975322 12223666676655
No 105
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=73.67 E-value=8.3 Score=30.38 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhHHHHh---ccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVC---KGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~---~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
.+.++.|....+++|+||.|+.--.-++|. +-.++|++.- +.+-.++-..-.|| -+||.|+-
T Consensus 25 k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y-~Gt~~eLG~~cgkp------f~v~~laI 89 (100)
T COG1911 25 KRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVY-EGTSVELGTVCGKP------FRVAALAI 89 (100)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEe-cCCceeHHhhhCCC------ceEEEEEE
Confidence 345678888889999999999887655554 3458998873 55555555443443 38888874
No 106
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=73.25 E-value=51 Score=30.35 Aligned_cols=106 Identities=14% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCeEEEEeCC---ChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201 80 ANTVGIVGGA---SVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (241)
Q Consensus 80 ~k~IGIIGGm---Gp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (241)
.|+-|-+||. .-.+..++.++|.....+....+++|.-..+ .++ .....+ +.+.
T Consensus 117 pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTD---a~~----------------~~~~~~---eAi~- 173 (285)
T TIGR02320 117 LKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVE---SLI----------------LGKGME---DALK- 173 (285)
T ss_pred CccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecc---ccc----------------ccCCHH---HHHH-
Confidence 5666777776 3356778888888777654234555544221 100 001122 2233
Q ss_pred HHHHHHHhCCcEEEEeC-Cc-hhh---hHHHHhccC-CCCeeecc----HHHHHHHHHhcCC
Q 026201 157 KRVFLEKAGARCIVMPC-HL-SHI---WHDEVCKGC-SVPFLHVS----ECVAKELKEANMK 208 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaC-NT-AH~---~~d~l~~~~-~vPil~Ii----d~t~~~i~~~~~k 208 (241)
-++..+++|||+|.+++ .+ ..- +++++.... ++|++-+. ....+++.+.|.+
T Consensus 174 Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~ 235 (285)
T TIGR02320 174 RAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGIS 235 (285)
T ss_pred HHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCC
Confidence 34567889999999996 23 222 223333211 46776432 1358899999876
No 107
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=73.24 E-value=73 Score=28.92 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=40.6
Q ss_pred HHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec----------------------cHHHHHHHHHhcCCCCCCCC
Q 026201 158 RVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAGS 214 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I----------------------id~t~~~i~~~~~k~~~~~~ 214 (241)
++.|...+|++|+=|..+.... ...+.+..++|+|.. +..+++++.+.+.|
T Consensus 52 ~~~li~~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~k------ 125 (336)
T cd06339 52 ARQAVAEGADIIVGPLLKENVAALAAAAAELGVPVLALNNDESVAAGPNLFYFGLSPEDEARRAAEYARSQGKR------ 125 (336)
T ss_pred HHHHHHcCCCEEEccCCHHHHHHHHhhhccCCCCEEEccCCccccCCCCEEEecCChHHHHHHHHHHHHhcCcc------
Confidence 3445556888777655444332 223444556666642 12244455554444
Q ss_pred CCEEEEEecHHHHh---hhhHHHHHHhcC
Q 026201 215 PLRIGVLAKNAILT---AGFYQEKLQHED 240 (241)
Q Consensus 215 ~~rVGLLaT~~T~~---s~~Y~~~L~~~G 240 (241)
||++++.+.... ...|++.+++.|
T Consensus 126 --~vaii~~~~~~g~~~~~~f~~~~~~~G 152 (336)
T cd06339 126 --RPLVLAPDGAYGQRVADAFRQAWQQLG 152 (336)
T ss_pred --ceEEEecCChHHHHHHHHHHHHHHHcC
Confidence 999997544322 344667777666
No 108
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=72.91 E-value=76 Score=29.02 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=17.5
Q ss_pred CEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201 216 LRIGVLAKNAIL---TAGFYQEKLQHEDC 241 (241)
Q Consensus 216 ~rVGLLaT~~T~---~s~~Y~~~L~~~G~ 241 (241)
+||++++-+... ....+++.+++.|+
T Consensus 135 k~v~~l~~d~~~g~~~~~~~~~~~~~~G~ 163 (359)
T TIGR03407 135 KRFFLLGSDYVFPRTANKIIKAYLKSLGG 163 (359)
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHcCC
Confidence 399999866422 23457788888774
No 109
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=72.61 E-value=24 Score=31.55 Aligned_cols=76 Identities=12% Similarity=-0.035 Sum_probs=42.4
Q ss_pred HHHHHHh-CCcEEEEeCCchhhhHHHHhccCCCCeeec-----------------------cHHHHHHHHHhcCCCCCCC
Q 026201 158 RVFLEKA-GARCIVMPCHLSHIWHDEVCKGCSVPFLHV-----------------------SECVAKELKEANMKPLEAG 213 (241)
Q Consensus 158 ~~~Le~~-Gad~IvIaCNTAH~~~d~l~~~~~vPil~I-----------------------id~t~~~i~~~~~k~~~~~ 213 (241)
++.|.+. ++++|+.++-+.....-++-+..++|+|.. ++..++.+.+.+.
T Consensus 59 ~~~li~~~~V~~iig~~~s~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~------ 132 (341)
T cd06341 59 ARDLVEDDKVVAVVGGSSGAGGSALPYLAGAGIPVIGGAGTSAWELTSPNSFPFSGGTPASLTTWGDFAKDQGG------ 132 (341)
T ss_pred HHHHHHhcCceEEEecccccchhHHHHHhhcCCceecCCCCCchhhcCCCeEEecCCCcchhHHHHHHHHHcCC------
Confidence 3456666 999999987554443213333445555432 2344455555443
Q ss_pred CCCEEEEEecHHH----HhhhhHHHHHHhcCC
Q 026201 214 SPLRIGVLAKNAI----LTAGFYQEKLQHEDC 241 (241)
Q Consensus 214 ~~~rVGLLaT~~T----~~s~~Y~~~L~~~G~ 241 (241)
+|++++.++.. -...-|++.++++|+
T Consensus 133 --~~~~~i~~~~~~~g~~~~~~~~~~~~~~G~ 162 (341)
T cd06341 133 --TRAVALVTALSAAVSAAAALLARSLAAAGV 162 (341)
T ss_pred --cEEEEEEeCCcHHHHHHHHHHHHHHHHcCC
Confidence 38998875542 123346777777663
No 110
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=71.69 E-value=36 Score=32.73 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=39.9
Q ss_pred CCcEEEEeCC--chhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH-HHhhhhHHHHHHhcC
Q 026201 165 GARCIVMPCH--LSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHED 240 (241)
Q Consensus 165 Gad~IvIaCN--TAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~-T~~s~~Y~~~L~~~G 240 (241)
++|+||+.-- --|+.+.+.++ .++|+++-+|...+.+... +.|||-||.| |-.+.+-...|+..|
T Consensus 66 ~~d~vv~spgi~~~~~~~~~a~~-~~i~i~~~~e~~~~~~~~~----------~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 66 DADVVVYSSAIPDDNPELVAARE-LGIPVVRRAEMLAELMRFR----------TSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred CCCEEEECCCCCCCCHHHHHHHH-CCCcEEeHHHHHHHHHccC----------cEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 6887775421 22445555543 5899999888765544321 2899999987 333445555565555
No 111
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=71.44 E-value=65 Score=27.60 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=20.1
Q ss_pred HHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeec
Q 026201 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~I 194 (241)
++.|...++|.+++...... ..+.++.+ ++|++.+
T Consensus 48 i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~--~ipvV~~ 85 (271)
T cd06314 48 LEDLIAEGVDGIAISPIDPKAVIPALNKAAA--GIKLITT 85 (271)
T ss_pred HHHHHhcCCCEEEEecCChhHhHHHHHHHhc--CCCEEEe
Confidence 35677889997777543211 23455543 6666654
No 112
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=71.27 E-value=62 Score=27.27 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=9.4
Q ss_pred HHHHHhCCcEEEEe
Q 026201 159 VFLEKAGARCIVMP 172 (241)
Q Consensus 159 ~~Le~~Gad~IvIa 172 (241)
+.+...++|.|++.
T Consensus 49 ~~~~~~~~dgii~~ 62 (268)
T cd06323 49 EDLITRGVDAIIIN 62 (268)
T ss_pred HHHHHcCCCEEEEc
Confidence 45666788876663
No 113
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=71.15 E-value=43 Score=28.24 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=42.2
Q ss_pred HHHHHHHhCCcEEEEeCCchhh--hHHHHhccCCCCeeec-------------------------cHHHHHHHHHhcCCC
Q 026201 157 KRVFLEKAGARCIVMPCHLSHI--WHDEVCKGCSVPFLHV-------------------------SECVAKELKEANMKP 209 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~--~~d~l~~~~~vPil~I-------------------------id~t~~~i~~~~~k~ 209 (241)
.++.|.+.+++.|+.+..+... ..+.+ +..++|+|.. .+..++.+++.+
T Consensus 58 ~~~~l~~~~v~~iig~~~~~~~~~~~~~~-~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 133 (298)
T cd06268 58 AARELVDDGVDAVIGPLSSGVALAAAPVA-EEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKG--- 133 (298)
T ss_pred HHHHHHhCCceEEEcCCcchhHHhhHHHH-HhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhc---
Confidence 3345666699999887665432 33333 3345665543 122344455443
Q ss_pred CCCCCCCEEEEEecHHHH---hhhhHHHHHHhcC
Q 026201 210 LEAGSPLRIGVLAKNAIL---TAGFYQEKLQHED 240 (241)
Q Consensus 210 ~~~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G 240 (241)
..++|++++.+... ....|++.++++|
T Consensus 134 ----~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g 163 (298)
T cd06268 134 ----KVKKVAIIYDDYAYGRGLAAAFREALKKLG 163 (298)
T ss_pred ----CCCEEEEEEcCCchhHHHHHHHHHHHHHcC
Confidence 13499999876432 2344566666665
No 114
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=71.03 E-value=35 Score=28.95 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=63.8
Q ss_pred EEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHH
Q 026201 83 VGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL 161 (241)
Q Consensus 83 IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L 161 (241)
+||| ||..+-..+.++..+....= -..++-+.|--.. ++.+ .+.++..
T Consensus 1 V~Ii--mGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRt-------------------------p~~~----~~~~~~a 49 (156)
T TIGR01162 1 VGII--MGSDSDLPTMKKAADILEEFGIPYELRVVSAHRT-------------------------PELM----LEYAKEA 49 (156)
T ss_pred CEEE--ECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccC-------------------------HHHH----HHHHHHH
Confidence 3566 67777778888887776432 2244445451111 1223 3333456
Q ss_pred HHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHH-----HHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHH
Q 026201 162 EKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVA-----KELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQE 234 (241)
Q Consensus 162 e~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~-----~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~ 234 (241)
++.|+++|+....-+-..---+...+..|+|++.-.+. ..+... .+ -| +.-.|+.++-++-....++.-
T Consensus 50 ~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgvP~~~~~l~G~daLlS~-vq-mP--~gvpvatv~I~~~~nAa~~Aa 123 (156)
T TIGR01162 50 EERGIKVIIAGAGGAAHLPGMVAALTPLPVIGVPVPSKALSGLDSLLSI-VQ-MP--SGVPVATVAIGNAGNAALLAA 123 (156)
T ss_pred HHCCCeEEEEeCCccchhHHHHHhccCCCEEEecCCccCCCCHHHHHHH-hc-CC--CCCeeEEEEcCChhHHHHHHH
Confidence 77899866655555444456677788999998754322 111111 00 11 222477777765555555433
No 115
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=70.84 E-value=59 Score=26.88 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=39.7
Q ss_pred HHHHHHhCCcEEEEeCCchhhh--HHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCCC
Q 026201 158 RVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSP 215 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~~ 215 (241)
++.+.+.|+|.||+.--..... ++.+. ..++|++.+ ....++.+.+.+.+
T Consensus 48 ~~~~~~~~~d~ii~~~~~~~~~~~~~~l~-~~~ip~v~~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~------- 119 (264)
T cd01537 48 LENLIARGVDGIIIAPSDLTAPTIVKLAR-KAGIPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEHLAEKGHR------- 119 (264)
T ss_pred HHHHHHcCCCEEEEecCCCcchhHHHHhh-hcCCCEEEeccCCCCCcccceEecCcHHHHHHHHHHHHHhcCC-------
Confidence 3456667888777643222222 34442 234454432 33455666665544
Q ss_pred CEEEEEecHH-----HHhhhhHHHHHHhcC
Q 026201 216 LRIGVLAKNA-----ILTAGFYQEKLQHED 240 (241)
Q Consensus 216 ~rVGLLaT~~-----T~~s~~Y~~~L~~~G 240 (241)
+|++++... .....-|++.+++.|
T Consensus 120 -~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 148 (264)
T cd01537 120 -RIALLAGPLGSSTARERVAGFKDALKEAG 148 (264)
T ss_pred -cEEEEECCCCCCcHHHHHHHHHHHHHHcC
Confidence 999997642 233455677776654
No 116
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=70.34 E-value=10 Score=37.14 Aligned_cols=48 Identities=13% Similarity=0.310 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEe--CCchhhhH----HHHhccCCCCeeeccH
Q 026201 148 SLIVENLRRKRVFLEKAGARCIVMP--CHLSHIWH----DEVCKGCSVPFLHVSE 196 (241)
Q Consensus 148 ~~i~~~l~~~~~~Le~~Gad~IvIa--CNTAH~~~----d~l~~~~~vPil~Iid 196 (241)
....+.-.++++.|.+.|||.+++. |-|-|... .+|.+ .+||++||.-
T Consensus 319 ~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~-~GiPvv~~~~ 372 (431)
T TIGR01918 319 AESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIER-AGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHH-cCCCEEEEee
Confidence 3455677888899999999999886 88999764 44543 7899999844
No 117
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=70.16 E-value=8.1 Score=29.75 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhHHHHhcc--CCCCeeeccHHHHHHHHHhcCC
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKG--CSVPFLHVSECVAKELKEANMK 208 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~--~~vPil~Iid~t~~~i~~~~~k 208 (241)
+....|+++|+++|+|-|-+.+. .++..+. ++.|++ +|+.-+-=+..+++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~ly--~D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFPLY--VDPERKLYKALGLK 55 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCcEE--EeCcHHHHHHhCCc
Confidence 34467899999999999999977 5555544 456644 56654444444543
No 118
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=69.96 E-value=12 Score=35.31 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHH
Q 026201 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202 (241)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i 202 (241)
+.+.-.+.....++.+++.|+|.||.+|-+-+.-++ ...+++++|+++-+++++
T Consensus 343 ~~~~s~~i~~~~~~~~~~~~ad~ivt~Cp~C~~ql~---~~~~~~~~H~~ell~~~~ 396 (397)
T TIGR03379 343 NYETSQAIGKSLFDQIEQSGADYVITDCETCKWQIE---MSTSLECIHPISLLAMAL 396 (397)
T ss_pred chHHHHHHHHHHHHHHHHhCCCEEEeCCcchHHHHH---hcCCCCCCCHHHHHHHHh
Confidence 345555555667788899999999999988776654 467899999998877654
No 119
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=69.81 E-value=10 Score=37.15 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEe--CCchhhhH----HHHhccCCCCeeecc
Q 026201 148 SLIVENLRRKRVFLEKAGARCIVMP--CHLSHIWH----DEVCKGCSVPFLHVS 195 (241)
Q Consensus 148 ~~i~~~l~~~~~~Le~~Gad~IvIa--CNTAH~~~----d~l~~~~~vPil~Ii 195 (241)
.....+-.++++.|.+.|||.+++. |-|-|... .+|.+ .+||++||.
T Consensus 319 ~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~-~GIPvV~i~ 371 (431)
T TIGR01917 319 ANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIER-AGIPVVHIC 371 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHH-cCCCEEEEe
Confidence 3455567788899999999999886 88999764 44443 789999984
No 120
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.81 E-value=68 Score=27.17 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=39.8
Q ss_pred HHHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeecc-------------------HHHHHHHHHhcCCCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHVS-------------------ECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~Ii-------------------d~t~~~i~~~~~k~~~~~~~~ 216 (241)
.++.|...++|.|++. |+........+++ ++|++-+. ..+++++.+.|.+
T Consensus 47 ~i~~l~~~~~dgiii~~~~~~~~~~~~~~~--~iPvV~i~~~~~~~~~~~V~~d~~~a~~~~~~~l~~~g~~-------- 116 (265)
T cd06290 47 ALELLKSRRVDALILLGGDLPEEEILALAE--EIPVLAVGRRVPGPGAASIAVDNFQGGYLATQHLIDLGHR-------- 116 (265)
T ss_pred HHHHHHHCCCCEEEEeCCCCChHHHHHHhc--CCCEEEECCCcCCCCCCEEEECcHHHHHHHHHHHHHCCCC--------
Confidence 3456888999977654 4433333444443 46655331 2334455555543
Q ss_pred EEEEEecHHH-----HhhhhHHHHHHhcC
Q 026201 217 RIGVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 217 rVGLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
+|++++.+.. -+..-|.+.+++.|
T Consensus 117 ~i~~i~~~~~~~~~~~r~~gf~~~~~~~~ 145 (265)
T cd06290 117 RIAHITGPRGHIDARDRLAGYRKALEEAG 145 (265)
T ss_pred eEEEEeCccccchhhHHHHHHHHHHHHcC
Confidence 8999965421 12233666666554
No 121
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.75 E-value=30 Score=33.33 Aligned_cols=65 Identities=20% Similarity=0.095 Sum_probs=35.3
Q ss_pred hCCcEEEEeCCchhhhHHHHhc--cCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHh-hhhHHHHHHhcC
Q 026201 164 AGARCIVMPCHLSHIWHDEVCK--GCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT-AGFYQEKLQHED 240 (241)
Q Consensus 164 ~Gad~IvIaCNTAH~~~d~l~~--~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~-s~~Y~~~L~~~G 240 (241)
.++|+||.. .....-..++++ ..++|+++=++...+. .. .+.|||-||.|--. +.+-...|+..|
T Consensus 76 ~~~dlVV~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~---~~--------~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 76 DGFDVIFKT-PSMRIDSPELVKAKEEGAYITSEMEEFIKY---CP--------AKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred ccCCEEEEC-CCCCCCchHHHHHHHcCCcEEechHHhhhh---cC--------CCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 467888775 433332333332 3579999855432221 11 23899999987332 334445555444
No 122
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=68.96 E-value=49 Score=25.18 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhHHH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWHDE 182 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~d~ 182 (241)
.+.++.+.+.|+..|+|.|+.-....+.
T Consensus 70 ~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 70 IELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp HHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred hhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 3445688999999999999988776544
No 123
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=68.84 E-value=47 Score=29.30 Aligned_cols=65 Identities=8% Similarity=0.056 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhh---HHHHhc-cCCCC---eeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIW---HDEVCK-GCSVP---FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~---~d~l~~-~~~vP---il~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T 226 (241)
.+.++.|.+.|..++++.-||.... .+.+++ .++++ |+.-..++++++++.+ ..++|.++|+++.
T Consensus 23 ~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~~-------~~~~v~~lg~~~l 94 (249)
T TIGR01457 23 ETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDLK-------LEKTVYVIGEEGL 94 (249)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhcC-------CCCEEEEEcChhH
Confidence 4566789999988887775564332 344443 23444 6666677888888753 1348999999863
No 124
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.54 E-value=74 Score=27.08 Aligned_cols=32 Identities=6% Similarity=0.018 Sum_probs=17.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEe
Q 026201 82 TVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLC 116 (241)
Q Consensus 82 ~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~ 116 (241)
+||||= |...-.||..+.+...+. ....++++
T Consensus 1 ~Igvi~---~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 35 (273)
T cd06310 1 KIALVP---KGTTSDFWQAVKAGAEAAAKELGVKVTFQ 35 (273)
T ss_pred CeEEEe---cCCCcHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 467663 222346777777766542 44455543
No 125
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=68.48 E-value=77 Score=28.55 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=19.4
Q ss_pred HHHHHhCCcEEEEeCCchhhh-H-------HHHhccCCCCeeec
Q 026201 159 VFLEKAGARCIVMPCHLSHIW-H-------DEVCKGCSVPFLHV 194 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~-~-------d~l~~~~~vPil~I 194 (241)
+.|...+|++|+-+-.+.... . ..+-+..++|+|..
T Consensus 60 ~~lv~~~v~aiiG~~~s~~~~~~~~~~~~~~~~~~~~~ip~i~~ 103 (342)
T cd06329 60 QKAIDDGVRLVVQGNSSSVALALTEAVRKHNQRNPGKEVLYLNY 103 (342)
T ss_pred HHHHHhCCeEEEcccchHHHHHhhhhhhhhhhhhccCCeEEEec
Confidence 344445888888774443322 1 12234456777764
No 126
>PRK09701 D-allose transporter subunit; Provisional
Probab=68.41 E-value=88 Score=27.92 Aligned_cols=124 Identities=8% Similarity=-0.046 Sum_probs=64.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (241)
..+||+|-. ..+-.||..+.+...+. ....+.++..+. ..+.+... +
T Consensus 24 ~~~Igvi~~---~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~-----------------------~~~~~~~~----~ 73 (311)
T PRK09701 24 AAEYAVVLK---TLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-----------------------EGDFQSQL----Q 73 (311)
T ss_pred CCeEEEEeC---CCCCHHHHHHHHHHHHHHHHcCCeEEEecCCC-----------------------CCCHHHHH----H
Confidence 358999963 23456777777776643 455555543110 11111222 2
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh---HHHHhccCCCCeeec---------------------------cHHHHHHHHHh-
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW---HDEVCKGCSVPFLHV---------------------------SECVAKELKEA- 205 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~---~d~l~~~~~vPil~I---------------------------id~t~~~i~~~- 205 (241)
.++.|...++|.|++........ ++++. ..++|++-+ ...+++++.++
T Consensus 74 ~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~-~~giPvV~~~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~aa~~L~~~~ 152 (311)
T PRK09701 74 LFEDLSNKNYKGIAFAPLSSVNLVMPVARAW-KKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKL 152 (311)
T ss_pred HHHHHHHcCCCEEEEeCCChHHHHHHHHHHH-HCCCcEEEeCCCCCcccccccCCceEEEeccchHHHHHHHHHHHHHHh
Confidence 33456677899888876543322 23333 245665532 23445556554
Q ss_pred cCCCCCCCCCCEEEEEec-HH----HHhhhhHHHHHHhcC
Q 026201 206 NMKPLEAGSPLRIGVLAK-NA----ILTAGFYQEKLQHED 240 (241)
Q Consensus 206 ~~k~~~~~~~~rVGLLaT-~~----T~~s~~Y~~~L~~~G 240 (241)
|.+ .++|++++. .. ..+..-|++.|+++|
T Consensus 153 g~~------~~~i~~l~g~~~~~~~~~R~~Gf~~al~~~~ 186 (311)
T PRK09701 153 GAE------GGEVAIIEGKAGNASGEARRNGATEAFKKAS 186 (311)
T ss_pred CCC------CCEEEEEECCCCCccHHHHHHHHHHHHHhCC
Confidence 321 248998843 22 233345778887765
No 127
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.05 E-value=76 Score=27.02 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=16.3
Q ss_pred CEEEEEecH-----HHHhhhhHHHHHHhcCC
Q 026201 216 LRIGVLAKN-----AILTAGFYQEKLQHEDC 241 (241)
Q Consensus 216 ~rVGLLaT~-----~T~~s~~Y~~~L~~~G~ 241 (241)
++|++++.. ...+..-|++.++++|+
T Consensus 126 ~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~ 156 (277)
T cd06319 126 GKVGMVAIPQKRKNGQKRTKGFKEAMKEAGC 156 (277)
T ss_pred CcEEEEeccCCCccHHHHHHHHHHHHHhcCC
Confidence 489999742 22333447888887763
No 128
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=67.72 E-value=58 Score=29.48 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchh------------------------------hhHHHHhccCCCCeeeccH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSH------------------------------IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH------------------------------~~~d~l~~~~~vPil~Iid 196 (241)
+.+.++.|++.|+|.|++- ||.+ .+..++++.+++|++....
T Consensus 171 ~~~~a~~l~~~G~d~i~~~-nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GG 242 (301)
T PRK07259 171 IVEIAKAAEEAGADGLSLI-NTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGG 242 (301)
T ss_pred HHHHHHHHHHcCCCEEEEE-ccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECC
Confidence 3445678999999998653 2211 2346777888999997644
No 129
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=67.40 E-value=94 Score=27.88 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=22.1
Q ss_pred HHHHH-hCCcEEEEeCCchhhh-HHHHhccCCCCeee
Q 026201 159 VFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLH 193 (241)
Q Consensus 159 ~~Le~-~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~ 193 (241)
+.|.. .|+++|+-|..+.... .-.+.+..++|+|.
T Consensus 60 ~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (344)
T cd06345 60 ERLVSQDKVDAVVGGYSSEVVLALQDVAAENKVPFIV 96 (344)
T ss_pred HHHhccCCceEEECCcchHHHHHHHHHHHHcCCcEEe
Confidence 34444 4888888887766654 34555555777765
No 130
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=67.23 E-value=58 Score=27.42 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=41.5
Q ss_pred HHHHHHh-CCcEEEEeCCchhh-hHHHHhccCCCCeeecc--------------------------HHHHHHHHHhcCCC
Q 026201 158 RVFLEKA-GARCIVMPCHLSHI-WHDEVCKGCSVPFLHVS--------------------------ECVAKELKEANMKP 209 (241)
Q Consensus 158 ~~~Le~~-Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Ii--------------------------d~t~~~i~~~~~k~ 209 (241)
++.|.+. |++.|+.+..+... ....+.+..++|+|.+. +..++.+++.+
T Consensus 59 ~~~l~~~~~v~~iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 135 (299)
T cd04509 59 ARRLCQQEGVDALVGPVSSGVALAVAPVAEALKIPLISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYN--- 135 (299)
T ss_pred HHHHhcccCceEEEcCCCcHHHHHHHHHHhhCCceEEeccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcC---
Confidence 3445555 99999887654332 23344444566666542 12333444433
Q ss_pred CCCCCCCEEEEEecHHHH---hhhhHHHHHHhcC
Q 026201 210 LEAGSPLRIGVLAKNAIL---TAGFYQEKLQHED 240 (241)
Q Consensus 210 ~~~~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G 240 (241)
.++|++++.+... ....|++.+++.|
T Consensus 136 -----~~~v~iv~~~~~~~~~~~~~~~~~~~~~g 164 (299)
T cd04509 136 -----WKKVAILYDDDSYGRGLLEAFKAAFKKKG 164 (299)
T ss_pred -----CcEEEEEecCchHHHHHHHHHHHHHHHcC
Confidence 3499999876542 2344666666665
No 131
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=66.82 E-value=20 Score=30.00 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHHHH-HHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHH---HHHHHHhcCCCCCCCCCCEEEEEecHHHHh
Q 026201 156 RKRVFL-EKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV---AKELKEANMKPLEAGSPLRIGVLAKNAILT 228 (241)
Q Consensus 156 ~~~~~L-e~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t---~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~ 228 (241)
+.++.+ ++.|+|+|+----|+ +.|++.+++|++.|--.. .+++.+.. ..+.+||+++-+..+.
T Consensus 24 ~~a~~~~~~~g~dViIsRG~ta----~~lr~~~~iPVV~I~~s~~Dil~al~~a~------~~~~~Iavv~~~~~~~ 90 (176)
T PF06506_consen 24 EEARQLLESEGADVIISRGGTA----ELLRKHVSIPVVEIPISGFDILRALAKAK------KYGPKIAVVGYPNIIP 90 (176)
T ss_dssp HHHHHHHTTTT-SEEEEEHHHH----HHHHCC-SS-EEEE---HHHHHHHHHHCC------CCTSEEEEEEESS-SC
T ss_pred HHHHHhhHhcCCeEEEECCHHH----HHHHHhCCCCEEEECCCHhHHHHHHHHHH------hcCCcEEEEecccccH
Confidence 344556 899999999765554 567888899999973322 23333321 2346999999887765
No 132
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=66.38 E-value=82 Score=26.82 Aligned_cols=73 Identities=11% Similarity=-0.003 Sum_probs=39.7
Q ss_pred HHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeecc------------------HHHHHHHHHh--cCCCCCCCC
Q 026201 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHVS------------------ECVAKELKEA--NMKPLEAGS 214 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~Ii------------------d~t~~~i~~~--~~k~~~~~~ 214 (241)
++.+...++|.|++...... ...+++++ .++|++.+- ..+++++.+. |.
T Consensus 50 i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~-~~ipvv~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~g~------- 121 (271)
T cd06321 50 IDNFIAAKVDLILLNAVDSKGIAPAVKRAQA-AGIVVVAVDVAAEGADATVTTDNVQAGEISCQYLADRLGGK------- 121 (271)
T ss_pred HHHHHHhCCCEEEEeCCChhHhHHHHHHHHH-CCCeEEEecCCCCCccceeeechHHHHHHHHHHHHHHhCCC-------
Confidence 34567889998877433222 23344433 356666552 2344555554 43
Q ss_pred CCEEEEEecHH----HHhhhhHHHHHHhc
Q 026201 215 PLRIGVLAKNA----ILTAGFYQEKLQHE 239 (241)
Q Consensus 215 ~~rVGLLaT~~----T~~s~~Y~~~L~~~ 239 (241)
++|++++.+. ..+..-|.+.++++
T Consensus 122 -~~i~~i~g~~~~~~~~R~~g~~~~~~~~ 149 (271)
T cd06321 122 -GNVAILNGPPVSAVLDRVAGCKAALAKY 149 (271)
T ss_pred -ceEEEEeCCCCchHHHHHHHHHHHHHhC
Confidence 3999996532 22333466666655
No 133
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=66.36 E-value=90 Score=27.24 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=20.3
Q ss_pred HHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeeec
Q 026201 158 RVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~I 194 (241)
++.+.+.++|.|++.....+ .+++++++ .++|++-+
T Consensus 48 i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~-~~ipvV~~ 86 (288)
T cd01538 48 IENMIAKGVDVLVIAPVDGEALASAVEKAAD-AGIPVIAY 86 (288)
T ss_pred HHHHHHcCCCEEEEecCChhhHHHHHHHHHH-CCCCEEEE
Confidence 34567789997776433323 34555554 35665444
No 134
>PRK08444 hypothetical protein; Provisional
Probab=66.34 E-value=10 Score=35.84 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=55.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
.+.|.|.||..|....+||..+++...+. .++.+-.+|..++. ++.. . ... ...+.+
T Consensus 97 ~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~-~~a~-------~-------~g~-------~~~e~l 154 (353)
T PRK08444 97 IKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVD-FLSR-------K-------FGK-------SYEEVL 154 (353)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHH-HHHH-------H-------cCC-------CHHHHH
Confidence 57899999999999999999999999876 45555555533321 1100 0 000 133555
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhccC
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGC 187 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~ 187 (241)
..|.++|+|- +|++-+-.+-|++++..
T Consensus 155 ~~LkeAGl~~--~~g~~aEi~~~~vr~~I 181 (353)
T PRK08444 155 EDMLEYGVDS--MPGGGAEIFDEEVRKKI 181 (353)
T ss_pred HHHHHhCccc--CCCCCchhcCHHHHhhh
Confidence 7899999995 57655556667777653
No 135
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=65.71 E-value=96 Score=27.37 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=40.4
Q ss_pred HHHHHHH-hCCcEEEEeCCchhhh-HHHHhccCCCCeeecc----------------------HHHHHHHHH-hcCCCCC
Q 026201 157 KRVFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS----------------------ECVAKELKE-ANMKPLE 211 (241)
Q Consensus 157 ~~~~Le~-~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Ii----------------------d~t~~~i~~-~~~k~~~ 211 (241)
.++.|.+ .+|++|+-++.+.... .-.+-+..++|+++.. ...++++.+ .+
T Consensus 60 ~~~~l~~~~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g----- 134 (343)
T PF13458_consen 60 AARKLIDDDGVDAVVGPLSSAQAEAVAPIAEEAGIPYISPSASSPSPDSPNVFRLSPSDSQQAAALAEYLAKKLG----- 134 (343)
T ss_dssp HHHHHHHTSTESEEEESSSHHHHHHHHHHHHHHT-EEEESSGGGGTTTHTTEEESS--HHHHHHHHHHHHHHTTT-----
T ss_pred HHHHhhhhcCcEEEEecCCcHHHHHHHHHHHhcCcEEEEeeccCCCCCCCcEEEEeccccHHHHHHHHHHHHHcC-----
Confidence 3345544 8888888887665543 2223333455555432 233444433 22
Q ss_pred CCCCCEEEEEecHHHHh---hhhHHHHHHhcCC
Q 026201 212 AGSPLRIGVLAKNAILT---AGFYQEKLQHEDC 241 (241)
Q Consensus 212 ~~~~~rVGLLaT~~T~~---s~~Y~~~L~~~G~ 241 (241)
.++|++++.+.... ...+++.+++.|+
T Consensus 135 ---~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~ 164 (343)
T PF13458_consen 135 ---AKKVAIVYPDDPYGRSLAEAFRKALEAAGG 164 (343)
T ss_dssp ---TSEEEEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred ---CcEEEEEecCchhhhHHHHHHHHHHhhcCc
Confidence 34999997664322 2335666666653
No 136
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=65.61 E-value=53 Score=30.78 Aligned_cols=86 Identities=13% Similarity=0.170 Sum_probs=50.9
Q ss_pred EeCCChHHHHHHHHHHHHHhccC-CCCCEEE-ecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHH
Q 026201 86 VGGASVDSTLNLLGKLVQLSGEE-NDFPFLL-CSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEK 163 (241)
Q Consensus 86 IGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi-~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~ 163 (241)
-|| +.+--..|...|++.+++. +. ++.+ .|.. +. .. ...+.++ ..+.++.|++
T Consensus 184 yGG-slenR~Rf~~eii~~ir~~~~~-~v~vRis~~---d~-~~---------------~G~~~~e----~~~i~~~l~~ 238 (337)
T PRK13523 184 YGG-SPENRYRFLREIIDAVKEVWDG-PLFVRISAS---DY-HP---------------GGLTVQD----YVQYAKWMKE 238 (337)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhcCC-CeEEEeccc---cc-CC---------------CCCCHHH----HHHHHHHHHH
Confidence 345 4677788888888888876 33 2222 2200 00 00 0112222 3345678999
Q ss_pred hCCcEEEEeCCch--------h----hhHHHHhccCCCCeeeccH
Q 026201 164 AGARCIVMPCHLS--------H----IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 164 ~Gad~IvIaCNTA--------H----~~~d~l~~~~~vPil~Iid 196 (241)
.|+|+|-+...|. + .+.+++++.+++|++....
T Consensus 239 ~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~ 283 (337)
T PRK13523 239 QGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGL 283 (337)
T ss_pred cCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCC
Confidence 9999999987661 1 1236788888999885544
No 137
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=65.60 E-value=94 Score=30.22 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=41.3
Q ss_pred CCcEEEEeCC--chh----hhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHH-hhhhHHHHHH
Q 026201 165 GARCIVMPCH--LSH----IWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL-TAGFYQEKLQ 237 (241)
Q Consensus 165 Gad~IvIaCN--TAH----~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~-~s~~Y~~~L~ 237 (241)
++|+||..-- ..| +.+.+.+ ..++|+++-++-..+.+.+.+.+ .. ..+.|||-||.|-= .+.+-...|+
T Consensus 69 ~~d~vv~sp~I~~~~~~~~~~~~~a~-~~~i~v~~~~e~~~~~~~~l~~~-~~--~~~~I~VTGTnGKTTTt~ml~~iL~ 144 (498)
T PRK02006 69 GVDLVALSPGLSPLEAALAPLVAAAR-ERGIPVWGEIELFAQALAALGAS-GY--APKVLAITGTNGKTTTTALTGLLCE 144 (498)
T ss_pred CCCEEEECCCCCCcccccCHHHHHHH-HCCCcEEEHHHHHHHHHhhhccc-cC--CCCEEEEECCCcHHHHHHHHHHHHH
Confidence 7898887532 222 4444443 35899999888776665443211 00 11489999998732 2334455555
Q ss_pred hcC
Q 026201 238 HED 240 (241)
Q Consensus 238 ~~G 240 (241)
+.|
T Consensus 145 ~~g 147 (498)
T PRK02006 145 RAG 147 (498)
T ss_pred HcC
Confidence 554
No 138
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=65.37 E-value=16 Score=33.66 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH-----------HHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH-----------DEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~-----------d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
.++.+|.++-|||+++++-=|+|-.| ++|++.+++|++ ++.+.-.+.+.+.|+.
T Consensus 159 eeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~ 228 (285)
T PRK07709 159 AECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTS 228 (285)
T ss_pred HHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 34557888899999999999999754 467778889865 4566667777777765
No 139
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=65.35 E-value=66 Score=27.11 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=37.3
Q ss_pred HHHHhCCcEEEEe-CCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCEEE
Q 026201 160 FLEKAGARCIVMP-CHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRIG 219 (241)
Q Consensus 160 ~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~rVG 219 (241)
.+.+.++|.|++. ++.......++.+ .++|++-+ ...+++++.+.|.+ +|+
T Consensus 54 ~~~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~g~~--------~i~ 124 (268)
T cd06271 54 LVESGLVDGVIISRTRPDDPRVALLLE-RGFPFVTHGRTELGDPHPWVDFDNEAAAYQAVRRLIALGHR--------RIA 124 (268)
T ss_pred HHHcCCCCEEEEecCCCCChHHHHHHh-cCCCEEEECCcCCCCCCCeEeeCcHHHHHHHHHHHHHcCCC--------cEE
Confidence 3455679987774 4332233344332 34454332 12345556555543 999
Q ss_pred EEecHHH-----HhhhhHHHHHHhcC
Q 026201 220 VLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 220 LLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
+++.... .+..-|++.++++|
T Consensus 125 ~i~~~~~~~~~~~R~~gf~~~~~~~~ 150 (268)
T cd06271 125 LLNPPEDLTFAQHRRAGYRRALAEAG 150 (268)
T ss_pred EecCccccchHHHHHHHHHHHHHHhC
Confidence 9975432 12233667776665
No 140
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=64.89 E-value=14 Score=34.06 Aligned_cols=54 Identities=11% Similarity=0.104 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH-----------HHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH-----------DEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~-----------d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
.++.+|.++-|+|+++++.=|+|-.| ++|++.+++|++ ++.+.-.+.+.+.|+.
T Consensus 159 eea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~GI~ 228 (286)
T PRK08610 159 KECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFGTA 228 (286)
T ss_pred HHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCCCe
Confidence 34556888999999999999999643 456777888865 4566666777777765
No 141
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=64.85 E-value=86 Score=28.19 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchh------------------------------hhHHHHhccCCCCeeeccH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSH------------------------------IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH------------------------------~~~d~l~~~~~vPil~Iid 196 (241)
+.+.++.+++.|||.|++- ||.. .+..++++.+++||+....
T Consensus 168 ~~~~a~~~~~~G~d~i~~~-nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GG 239 (296)
T cd04740 168 IVEIARAAEEAGADGLTLI-NTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGG 239 (296)
T ss_pred HHHHHHHHHHcCCCEEEEE-CCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECC
Confidence 3445678999999998662 3311 2346777788999998644
No 142
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=64.01 E-value=18 Score=33.32 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii 195 (241)
-.+.+.+.++.||++||=.|+|=|-- ...+.+|.+.+++|.|+|.
T Consensus 159 ~a~~l~~dA~ale~AGaf~ivlE~Vp-~~lA~~IT~~lsiPtIGIG 203 (268)
T COG0413 159 SAEKLLEDAKALEEAGAFALVLECVP-AELAKEITEKLSIPTIGIG 203 (268)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeccH-HHHHHHHHhcCCCCEEeec
Confidence 33446667788999999999999864 4566999999999999984
No 143
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.75 E-value=62 Score=30.84 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=41.4
Q ss_pred hCCcEEEEeCCc--hhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH-HHhhhhHHHHHHhcC
Q 026201 164 AGARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA-ILTAGFYQEKLQHED 240 (241)
Q Consensus 164 ~Gad~IvIaCNT--AH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~-T~~s~~Y~~~L~~~G 240 (241)
.+.|+||+..-- -|+.+.+.+ ..++|+++-++...+... .. +.|||-||.| |-.+.+-...|+..|
T Consensus 67 ~~~d~vv~s~gi~~~~~~~~~a~-~~~i~v~~~~~~~~~~~~--~~--------~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 67 DQPDLVVVSPGIPWDHPTLVELR-ERGIEVIGEIELAWRALK--HI--------PWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred hcCCEEEECCCCCCCCHHHHHHH-HcCCcEEEhHHHHHHhhc--CC--------CEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 367888773222 123334443 358999997766544322 11 3899999998 666777777777665
No 144
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=63.56 E-value=38 Score=30.97 Aligned_cols=89 Identities=13% Similarity=0.232 Sum_probs=54.5
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
.+++||||-.-+..|=-||++.|.+..+ ..++++|..+- +..+-...|.+.+
T Consensus 13 ~p~~I~vITs~~gAa~~D~~~~~~~r~~---~~~~~~~p~~v---------------------QG~~A~~~I~~al---- 64 (319)
T PF02601_consen 13 FPKRIAVITSPTGAAIQDFLRTLKRRNP---IVEIILYPASV---------------------QGEGAAASIVSAL---- 64 (319)
T ss_pred CCCEEEEEeCCchHHHHHHHHHHHHhCC---CcEEEEEeccc---------------------cccchHHHHHHHH----
Confidence 4789999999988888899999987333 44566655210 1222233444444
Q ss_pred HHHHHhC----CcEEEEeCCchh---hh-H--HHHhc---cCCCCeeecc
Q 026201 159 VFLEKAG----ARCIVMPCHLSH---IW-H--DEVCK---GCSVPFLHVS 195 (241)
Q Consensus 159 ~~Le~~G----ad~IvIaCNTAH---~~-~--d~l~~---~~~vPil~Ii 195 (241)
+.+.+.+ +|+|||+==--. .| | +.|.. .+++|||+-|
T Consensus 65 ~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaI 114 (319)
T PF02601_consen 65 RKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAI 114 (319)
T ss_pred HHHHhccccccccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEec
Confidence 4555554 999999854332 23 2 23333 4689998653
No 145
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.52 E-value=89 Score=30.51 Aligned_cols=71 Identities=11% Similarity=-0.041 Sum_probs=39.3
Q ss_pred CCcEEEEeCC--chhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHH-HhhhhHHHHHHhcC
Q 026201 165 GARCIVMPCH--LSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI-LTAGFYQEKLQHED 240 (241)
Q Consensus 165 Gad~IvIaCN--TAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T-~~s~~Y~~~L~~~G 240 (241)
++|+||..-- -.|+.+...++ .++|+++=++...+......+. ...+.|||-||.|- -.+.+-...|+..|
T Consensus 70 ~~D~VV~SpGi~~~~p~~~~a~~-~gi~v~~~iel~~~~~~~~~~~----~~~~vIgITGTnGKTTTt~li~~iL~~~g 143 (488)
T PRK03369 70 DYALVVTSPGFRPTAPVLAAAAA-AGVPIWGDVELAWRLDAAGCYG----PPRRWLVVTGTNGKTTTTSMLHAMLIAAG 143 (488)
T ss_pred cCCEEEECCCCCCCCHHHHHHHH-CCCcEeeHHHHhhhhhhhhccC----CCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 5687766432 23445555543 4899999777654443221111 01248999999873 33344555555544
No 146
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=63.42 E-value=28 Score=31.94 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhh-----------HHHHhccCCCCeeecc-----HHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIW-----------HDEVCKGCSVPFLHVS-----ECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~-----------~d~l~~~~~vPil~Ii-----d~t~~~i~~~~~k 208 (241)
.++.++.++.|+|++++.+=|.|.. ++++++.+++|++=+. +.-.+.+.+.|+.
T Consensus 156 eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~ 225 (282)
T TIGR01859 156 DEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIA 225 (282)
T ss_pred HHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 3344566668999999998888832 3556777889987554 5556666666765
No 147
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=63.36 E-value=43 Score=31.19 Aligned_cols=105 Identities=17% Similarity=0.209 Sum_probs=70.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
.|+.|=+-|-.-...-+..+||.....+...++++|.-..+ .++.. .+-+.+. -++
T Consensus 118 pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTd---a~~~~--------------------~ld~AI~-Ra~ 173 (289)
T COG2513 118 PKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTD---ALLVE--------------------GLDDAIE-RAQ 173 (289)
T ss_pred chhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehH---HHHhc--------------------cHHHHHH-HHH
Confidence 46666666777778888889998888876237888865332 11110 0222233 334
Q ss_pred HHHHhCCcEEEEeCCchhhhHHHHhccCCCCe-eeccH------HHHHHHHHhcCC
Q 026201 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPF-LHVSE------CVAKELKEANMK 208 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPi-l~Iid------~t~~~i~~~~~k 208 (241)
..+++|||.|-.+--+...-+.++.+.+++|+ +||.+ -+++.+.+.|.+
T Consensus 174 AY~eAGAD~if~~al~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~ 229 (289)
T COG2513 174 AYVEAGADAIFPEALTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVK 229 (289)
T ss_pred HHHHcCCcEEccccCCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCce
Confidence 45789999999999998777888888888764 45543 356788888876
No 148
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=63.12 E-value=11 Score=34.74 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH-----------HHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH-----------DEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~-----------d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
.++.+|.++-|||+++++.=|+|-.| ++|++.+++|++ ++.+.-.+.+.+.|+.
T Consensus 158 e~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~ 227 (284)
T PRK12857 158 EEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLGVR 227 (284)
T ss_pred HHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 45567888999999999999999643 457778888865 4566667777777765
No 149
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=62.92 E-value=94 Score=26.29 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCee-------------ec-----cHHHHHHHHHhcCCCCCCCCCCEEE
Q 026201 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-------------HV-----SECVAKELKEANMKPLEAGSPLRIG 219 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil-------------~I-----id~t~~~i~~~~~k~~~~~~~~rVG 219 (241)
++.+...++|.|++.-...+ .+++.+ .++|++ .. ...+++++.+.|.+ +|+
T Consensus 48 i~~~~~~~~dgiii~~~~~~--~~~~~~-~gipvv~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~--------~i~ 116 (265)
T cd06291 48 LEMLRQNQVDGIIAGTHNLG--IEEYEN-IDLPIVSFDRYLSENIPIVSSDNYEGGRLAAEELIERGCK--------HIA 116 (265)
T ss_pred HHHHHHcCCCEEEEecCCcC--HHHHhc-CCCCEEEEeCCCCCCCCeEeechHHHHHHHHHHHHHcCCc--------EEE
Confidence 34577788887766432222 223322 234433 32 23445556555543 899
Q ss_pred EEec-HH---H--HhhhhHHHHHHhcC
Q 026201 220 VLAK-NA---I--LTAGFYQEKLQHED 240 (241)
Q Consensus 220 LLaT-~~---T--~~s~~Y~~~L~~~G 240 (241)
+++- .. + .+..-|++.++++|
T Consensus 117 ~i~~~~~~~~~~~~r~~gf~~~l~~~~ 143 (265)
T cd06291 117 HIGGPNNTVSPTNLRYEGFLDVLKENG 143 (265)
T ss_pred EEccCcccccchHHHHHHHHHHHHHcC
Confidence 8852 22 1 22334777887765
No 150
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=62.41 E-value=22 Score=32.92 Aligned_cols=54 Identities=17% Similarity=0.286 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH-----------HHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH-----------DEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~-----------d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
.++.+|.++-|+|+++++.=|+|-.| ++|++.+++|++ ++.+.-.+.+.+.|+.
T Consensus 158 eea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~GI~ 227 (286)
T PRK12738 158 QEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVT 227 (286)
T ss_pred HHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 34556778889999999999999643 456677888865 4556666666777665
No 151
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.16 E-value=1.1e+02 Score=26.64 Aligned_cols=36 Identities=11% Similarity=-0.082 Sum_probs=20.8
Q ss_pred HHHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeee
Q 026201 157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLH 193 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~ 193 (241)
.++.|...++|.|++.....+ ..++.+++ .++|++-
T Consensus 48 ~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~-~~iPvV~ 86 (280)
T cd06315 48 ALNQAIALKPDGIVLGGVDAAELQAELELAQK-AGIPVVG 86 (280)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH-CCCCEEE
Confidence 345678899998888644333 23344443 3555443
No 152
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=61.03 E-value=81 Score=28.97 Aligned_cols=99 Identities=11% Similarity=0.195 Sum_probs=62.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEec-CccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCS-DPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S-~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
+-+|||+ =+|..+|..+...+.+.-..++.+.+-+++ .+.+ +++.+.+...
T Consensus 2 vvKiGii-KlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm------------------------~pe~~~~~~~--- 53 (277)
T PRK00994 2 VVKIGII-KLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKM------------------------GPEEVEEVVK--- 53 (277)
T ss_pred eEEEEEE-EecccchHHHHHHHHHhhhcccCceEEEeccCCCC------------------------CHHHHHHHHH---
Confidence 4479998 788888888888888877766556555544 2221 2233322222
Q ss_pred HHHHHhCCcEEEEeCCchhh----hHHHHhccCCCCeeeccHHHH----HHHHHhc
Q 026201 159 VFLEKAGARCIVMPCHLSHI----WHDEVCKGCSVPFLHVSECVA----KELKEAN 206 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~----~~d~l~~~~~vPil~Iid~t~----~~i~~~~ 206 (241)
+.+++.+.||+++-|.-+-. -++++-+..++|.|=|-|.-. +++++.|
T Consensus 54 ~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g 109 (277)
T PRK00994 54 KMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQG 109 (277)
T ss_pred HHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcC
Confidence 35678899988877754433 256777777888888776433 4454444
No 153
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=60.96 E-value=38 Score=29.86 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=56.3
Q ss_pred HHHHHhCCcEEEEe-CCchhhhHHHHhccC-----CCCeeeccHHHHHHHHHhcCCCCCCC----------------C-C
Q 026201 159 VFLEKAGARCIVMP-CHLSHIWHDEVCKGC-----SVPFLHVSECVAKELKEANMKPLEAG----------------S-P 215 (241)
Q Consensus 159 ~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~-----~vPil~Iid~t~~~i~~~~~k~~~~~----------------~-~ 215 (241)
..|.. .|.|++. -|+.+.+++.+...- +.++.-|.+.|++.+++.|+++--.. . .
T Consensus 46 ~~l~~--~d~vvfTS~~av~~~~~~l~~~~~~~~~~~~i~aVG~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~ 123 (248)
T COG1587 46 EDLDS--ADWVVFTSPNAVRFFFEALKEQGLDALKNKKIAAVGEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGG 123 (248)
T ss_pred hcccc--CCEEEEECHHHHHHHHHHHHhhcccccccCeEEEEcHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCC
Confidence 34444 7888887 477777787776654 58999999999999999987733111 0 3
Q ss_pred CEEEEEecHHHHhhhhHHHHHHhcCC
Q 026201 216 LRIGVLAKNAILTAGFYQEKLQHEDC 241 (241)
Q Consensus 216 ~rVGLLaT~~T~~s~~Y~~~L~~~G~ 241 (241)
++|.++...+-. ....+.|.+.|+
T Consensus 124 ~~vl~~~~~~~r--~~l~~~L~~~G~ 147 (248)
T COG1587 124 KRVLILRGNGGR--EVLEEKLEERGA 147 (248)
T ss_pred CeEEEEcCCCch--HHHHHHHHhCCC
Confidence 688888877753 567777777764
No 154
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=60.94 E-value=21 Score=32.86 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhh-----------HHHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIW-----------HDEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~-----------~d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
.++.+|.++-|||+++++.=|+|-. +++|++.+++|++ ++.+.-.+.+.+.|+.
T Consensus 158 eeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~Gi~ 227 (284)
T PRK12737 158 DAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISLGIC 227 (284)
T ss_pred HHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCCCe
Confidence 3455678889999999999999964 3557777888865 4566667777777765
No 155
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=60.71 E-value=42 Score=30.57 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=38.6
Q ss_pred HHHHHHHhCCcEEEEeCCchh-------hhHHHHhccCCCCee-e--ccHHHHHHHHHhcCC
Q 026201 157 KRVFLEKAGARCIVMPCHLSH-------IWHDEVCKGCSVPFL-H--VSECVAKELKEANMK 208 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH-------~~~d~l~~~~~vPil-~--Iid~t~~~i~~~~~k 208 (241)
.++.++..|+|.|.+.+|..+ ...+++++.+++|++ - +-...++.+.+.|.+
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d 195 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGAD 195 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCC
Confidence 346677889999999999887 567889998888876 2 223456667777765
No 156
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=60.55 E-value=12 Score=34.69 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH--------HH--HHHHHhcCCCCCCCCCCEEEEEe
Q 026201 153 NLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC--------VA--KELKEANMKPLEAGSPLRIGVLA 222 (241)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~--------t~--~~i~~~~~k~~~~~~~~rVGLLa 222 (241)
-+.+.++.|.+.|+|+||+=.. .|.+..++.+..++||||..+- .+ -.+.+... ..++.||+++|
T Consensus 89 s~~Dta~vls~y~~D~iv~R~~-~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~G----~l~g~kv~~vG 163 (305)
T PRK00856 89 TLADTIRTLSAMGADAIVIRHP-QSGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIREEFG----RLEGLKVAIVG 163 (305)
T ss_pred CHHHHHHHHHhcCCCEEEEeCC-ChHHHHHHHHHCCCCEEECCCCCCCCcHHHHHHHHHHHHHhC----CCCCCEEEEEC
Confidence 3555667899999999999864 6777888888899999999752 11 11233211 12456999997
Q ss_pred c---HHHHhhh
Q 026201 223 K---NAILTAG 230 (241)
Q Consensus 223 T---~~T~~s~ 230 (241)
= ..|..|-
T Consensus 164 D~~~~~v~~Sl 174 (305)
T PRK00856 164 DIKHSRVARSN 174 (305)
T ss_pred CCCCCcHHHHH
Confidence 5 2455543
No 157
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=60.23 E-value=82 Score=28.93 Aligned_cols=27 Identities=4% Similarity=0.005 Sum_probs=17.2
Q ss_pred CCEEEEEecHHHHh---hhhHHHHHHhcCC
Q 026201 215 PLRIGVLAKNAILT---AGFYQEKLQHEDC 241 (241)
Q Consensus 215 ~~rVGLLaT~~T~~---s~~Y~~~L~~~G~ 241 (241)
.+||+++..+...- ...+++.+++.|+
T Consensus 140 ~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~ 169 (351)
T cd06334 140 GKKIALVYHDSPFGKEPIEALKALAEKLGF 169 (351)
T ss_pred CCeEEEEeCCCccchhhHHHHHHHHHHcCC
Confidence 35999998876543 2345666766663
No 158
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.17 E-value=1.1e+02 Score=25.99 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=40.7
Q ss_pred HHHHHHhCCcEEEE-eCCch--hhhHHHHhccCCCCeeecc--------------------HHHHHHHHHh--cCCCCCC
Q 026201 158 RVFLEKAGARCIVM-PCHLS--HIWHDEVCKGCSVPFLHVS--------------------ECVAKELKEA--NMKPLEA 212 (241)
Q Consensus 158 ~~~Le~~Gad~IvI-aCNTA--H~~~d~l~~~~~vPil~Ii--------------------d~t~~~i~~~--~~k~~~~ 212 (241)
++.+...++|.|++ ++++. ...++++++ .++|++.+- ..+++.+.+. |.
T Consensus 48 ~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~~g~----- 121 (267)
T cd06322 48 VEDFITKKVDAIVLSPVDSKGIRAAIAKAKK-AGIPVITVDIAAEGVAVVSHVATDNYAGGVLAGELAAKVLNGK----- 121 (267)
T ss_pred HHHHHHcCCCEEEEcCCChhhhHHHHHHHHH-CCCCEEEEcccCCCCceEEEEecChHHHHHHHHHHHHHHhCCC-----
Confidence 34567789998877 65542 123455433 356655442 1234455554 32
Q ss_pred CCCCEEEEEecHH----HHhhhhHHHHHHhc-CC
Q 026201 213 GSPLRIGVLAKNA----ILTAGFYQEKLQHE-DC 241 (241)
Q Consensus 213 ~~~~rVGLLaT~~----T~~s~~Y~~~L~~~-G~ 241 (241)
++|++++.+. ..+..-|++.++++ |+
T Consensus 122 ---~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~ 152 (267)
T cd06322 122 ---GQVAIIDYPTVQSVVDRVRGFKEALADYPNI 152 (267)
T ss_pred ---ceEEEEecCCCccHHHHHHHHHHHHHhCCCc
Confidence 3899996432 12334567777766 53
No 159
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=60.13 E-value=22 Score=32.81 Aligned_cols=54 Identities=17% Similarity=0.266 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH-----------HHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH-----------DEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~-----------d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
.++.+|.++-|||+++++.=|+|-.| ++|++.+++|++ ++.+.-.+.+.+.|+.
T Consensus 156 eea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~ 225 (282)
T TIGR01858 156 QEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGIC 225 (282)
T ss_pred HHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCe
Confidence 44557888999999999999999633 456778888865 4566666666777765
No 160
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=59.37 E-value=18 Score=30.77 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCcEEEEeC-CchhhhHHHHh-------ccCCCCeeeccHHHHHHHHHhcCCC--CCC-C-----------
Q 026201 156 RKRVFLEKAGARCIVMPC-HLSHIWHDEVC-------KGCSVPFLHVSECVAKELKEANMKP--LEA-G----------- 213 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaC-NTAH~~~d~l~-------~~~~vPil~Iid~t~~~i~~~~~k~--~~~-~----------- 213 (241)
...+.|.....|.|++.+ |...+|++.++ .-.+++++-|.+.|++.+.+.|+++ .+. .
T Consensus 33 ~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG~~Ta~~l~~~G~~~~~~~~~~~~s~~L~~~l~ 112 (231)
T PF02602_consen 33 AALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVGPKTAEALREYGFQPDFVPSSEGSSEGLAELLK 112 (231)
T ss_dssp HHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESSHHHHHHHHHTT-EECEE-TTSSSHHHHHGGHH
T ss_pred HHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEcHHHHHHHHHcCCCccccCCCCCCHHHHHHHHH
Confidence 334566677899999887 45556666665 2236899999999999999998775 233 1
Q ss_pred ---CCCEEEEEecHHHHhhhhHHHHHHhcC
Q 026201 214 ---SPLRIGVLAKNAILTAGFYQEKLQHED 240 (241)
Q Consensus 214 ---~~~rVGLLaT~~T~~s~~Y~~~L~~~G 240 (241)
.++||.++..+.. .+...+.|++.|
T Consensus 113 ~~~~~~~vl~~~g~~~--~~~l~~~L~~~g 140 (231)
T PF02602_consen 113 EQLRGKRVLILRGEGG--RPDLPEKLREAG 140 (231)
T ss_dssp HCCTTEEEEEEESSSS--CHHHHHHHHHTT
T ss_pred hhCCCCeEEEEcCCCc--cHHHHHHHHHCC
Confidence 2356777766543 445667776665
No 161
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=59.04 E-value=14 Score=30.38 Aligned_cols=41 Identities=24% Similarity=0.331 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid 196 (241)
+.+.++.|.+. +|+||+=.. .|...+++.+..++||||..+
T Consensus 84 l~Dtar~ls~~-~D~iv~R~~-~~~~~~~~a~~~~vPVINa~~ 124 (142)
T PF02729_consen 84 LEDTARVLSRY-VDAIVIRHP-SHGALEELAEHSSVPVINAGD 124 (142)
T ss_dssp HHHHHHHHHHH-CSEEEEEES-SHHHHHHHHHHCSSEEEEEEE
T ss_pred HHHHHHHHHHh-hheEEEEec-cchHHHHHHHhccCCeEcCcC
Confidence 44555788888 999998844 467789999999999999876
No 162
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=59.03 E-value=23 Score=28.03 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchh
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSH 177 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH 177 (241)
+...++.|.+.|+|.|-++.-+.-
T Consensus 54 ~~~~~~~l~~~~~d~IHlssC~~~ 77 (107)
T PF08821_consen 54 LVRRIKKLKKNGADVIHLSSCMVK 77 (107)
T ss_pred HHHHHHHHHHCCCCEEEEcCCEec
Confidence 344556788999999988655443
No 163
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.89 E-value=1.1e+02 Score=25.91 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=39.7
Q ss_pred HHHHHHHhCCcEEEEeCCchh-hhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH-~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
.++.+...++|.|++...... ..+.++.+ .++|++-+ +..+++.+.+.|.+
T Consensus 47 ~i~~~~~~~~dgiii~~~~~~~~~~~~~~~-~~~pvV~i~~~~~~~~~~~V~~d~~~~~~~~~~~L~~~G~~-------- 117 (269)
T cd06293 47 YLRWLDTNHVDGLIFVTNRPDDGALAKLIN-SYGNIVLVDEDVPGAKVPKVFCDNEQGGRLATRHLARAGHR-------- 117 (269)
T ss_pred HHHHHHHCCCCEEEEeCCCCCHHHHHHHHh-cCCCEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCc--------
Confidence 345678889998888643222 22333222 12333322 12345556665544
Q ss_pred EEEEEecHHH-----HhhhhHHHHHHhcC
Q 026201 217 RIGVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 217 rVGLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
+|++++.... -+..=|++.++++|
T Consensus 118 ~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~ 146 (269)
T cd06293 118 RIAFVGGPDALISARERYAGYREALAEAH 146 (269)
T ss_pred eEEEEecCcccccHHHHHHHHHHHHHHcC
Confidence 9999964321 12233777777765
No 164
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=58.69 E-value=14 Score=34.01 Aligned_cols=54 Identities=11% Similarity=0.208 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH-----------HHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH-----------DEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~-----------d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
.++.+|.++-|+|+++++.=|+|-.| ++|++.+++|++ ++.+.-.+.+.+.|+.
T Consensus 158 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~ 227 (284)
T PRK09195 158 AQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGIC 227 (284)
T ss_pred HHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCe
Confidence 34556788899999999999999653 447777888865 4566667777777765
No 165
>PRK09234 fbiC FO synthase; Reviewed
Probab=58.16 E-value=34 Score=36.23 Aligned_cols=104 Identities=18% Similarity=0.067 Sum_probs=62.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
...|.|.||..|.-..++|..+++...+. ..+.+..+|-.++...-...+. ...+.+
T Consensus 574 ~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl----------------------~~~e~l 631 (843)
T PRK09234 574 ATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGL----------------------SIREWL 631 (843)
T ss_pred CCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCC----------------------CHHHHH
Confidence 46799999999988999999999999877 4555555553332210000000 123445
Q ss_pred HHHHHhCCcEEEEeCCchhhhH-HHHhccCCCCeeec--cHHHHHHHHHhcCC
Q 026201 159 VFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHV--SECVAKELKEANMK 208 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~-d~l~~~~~vPil~I--id~t~~~i~~~~~k 208 (241)
+.|.++|+|-+ | .|+.-++ +++++...=..+.- =-.+++.+++.|++
T Consensus 632 ~~LkeAGLds~--p-gt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~ 681 (843)
T PRK09234 632 TALREAGLDTI--P-GTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLR 681 (843)
T ss_pred HHHHHhCcCcc--C-CCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 68999999977 3 5666555 66765532111111 02455666666654
No 166
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=58.03 E-value=17 Score=34.79 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=27.1
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh--HHHHhcc-----CCCCee
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKG-----CSVPFL 192 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~-----~~vPil 192 (241)
-++.|+++|||.+=+++++.-.. +.+|++. +++|++
T Consensus 36 QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlV 78 (359)
T PF04551_consen 36 QIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLV 78 (359)
T ss_dssp HHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EE
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCee
Confidence 34679999999999999998875 5888888 999986
No 167
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=57.84 E-value=1.2e+02 Score=26.07 Aligned_cols=17 Identities=12% Similarity=-0.052 Sum_probs=11.9
Q ss_pred HHHHHHhCCcEEEEeCC
Q 026201 158 RVFLEKAGARCIVMPCH 174 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCN 174 (241)
++.+.+.++|.|++.+.
T Consensus 48 i~~~~~~~vdgiii~~~ 64 (272)
T cd06313 48 IENMASQGWDFIAVDPL 64 (272)
T ss_pred HHHHHHcCCCEEEEcCC
Confidence 34566789998888543
No 168
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=57.76 E-value=17 Score=33.52 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=39.7
Q ss_pred HHHHHHhCCcEEEEeCCchhhhHHHHhc-cCCCCeeeccHHHHHHHHHhcCCCCCCCC--CCEEEEEecHHHHhhhhHHH
Q 026201 158 RVFLEKAGARCIVMPCHLSHIWHDEVCK-GCSVPFLHVSECVAKELKEANMKPLEAGS--PLRIGVLAKNAILTAGFYQE 234 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~-~~~vPil~Iid~t~~~i~~~~~k~~~~~~--~~rVGLLaT~~T~~s~~Y~~ 234 (241)
++..++.|||+|++= |+--+-..=... ..-.|+-+-=+.+.+...+- +|..+ +.-.|+.||+.+..-+.|-+
T Consensus 28 Ak~ae~gGaDlI~~y-nsGrfR~~G~~SlagllpygnaN~iv~em~~ei----Lp~v~~tPViaGv~atDP~~~~~~fl~ 102 (268)
T PF09370_consen 28 AKCAEKGGADLILIY-NSGRFRMAGRGSLAGLLPYGNANEIVMEMAREI----LPVVKDTPVIAGVCATDPFRDMDRFLD 102 (268)
T ss_dssp HHHHHHTT-SEEEE--HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHH----GGG-SSS-EEEEE-TT-TT--HHHHHH
T ss_pred hHHHHhcCCCEEEEe-cchhHhhCCCcchhhhhcccCHhHHHHHHHHhh----hhhccCCCEEEEecCcCCCCcHHHHHH
Confidence 467899999999874 222111100000 11257766444444444332 11222 23458999999999999999
Q ss_pred HHHhcCC
Q 026201 235 KLQHEDC 241 (241)
Q Consensus 235 ~L~~~G~ 241 (241)
.|++.||
T Consensus 103 ~lk~~Gf 109 (268)
T PF09370_consen 103 ELKELGF 109 (268)
T ss_dssp HHHHHT-
T ss_pred HHHHhCC
Confidence 9988886
No 169
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=57.70 E-value=1.4e+02 Score=26.72 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCCCCCCCCEEEEEecHHH-----HhhhhHHHHHHhcCC
Q 026201 197 CVAKELKEANMKPLEAGSPLRIGVLAKNAI-----LTAGFYQEKLQHEDC 241 (241)
Q Consensus 197 ~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T-----~~s~~Y~~~L~~~G~ 241 (241)
.+++++.+.|.+ +|++++.... -+..-|.+.++++|+
T Consensus 166 ~a~~~L~~~G~~--------~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi 207 (346)
T PRK10401 166 MATRMLLNNGHQ--------RIGYLSSSHGIEDDAMRRAGWMSALKEQGI 207 (346)
T ss_pred HHHHHHHHCCCC--------eEEEEeCCCcCcchHHHHHHHHHHHHHcCC
Confidence 455666666654 9999964321 222337888888774
No 170
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=57.59 E-value=22 Score=32.81 Aligned_cols=54 Identities=11% Similarity=0.276 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH----------HHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH----------DEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~----------d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
.++.+|.++-|+|+++++.=|+|-.| ++|++.+++|++ ++-+.-.+.+.+.|+.
T Consensus 156 e~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~ 224 (283)
T PRK07998 156 EKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVA 224 (283)
T ss_pred HHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCc
Confidence 34457888999999999999999643 556777888865 4555666666667765
No 171
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=57.46 E-value=93 Score=28.94 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=24.4
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I 194 (241)
.+++|.+.||++|+-+..++-.. ...+.+..++|+|+.
T Consensus 51 ~a~~Li~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~~ 89 (347)
T TIGR03863 51 ALKALLAQGVRFFVLDLPAAALLALADAAKAKGALLFNA 89 (347)
T ss_pred HHHHHHHCCCCEEEecCChHHHHHHHHHHHhCCcEEEeC
Confidence 34456667899888887775554 345555666776653
No 172
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=57.32 E-value=22 Score=29.87 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHH-----HH---HHHHhcCCCCCCCCCCEEEEEecHHHH
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV-----AK---ELKEANMKPLEAGSPLRIGVLAKNAIL 227 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t-----~~---~i~~~~~k~~~~~~~~rVGLLaT~~T~ 227 (241)
+.++.+++.|+++|+...-.+-..---+...+..|+|++.-.+ .. .+.+. | +.--|+.++.++-.
T Consensus 46 ~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqM-----p--~g~pvatv~i~~~~ 118 (150)
T PF00731_consen 46 EFVKEYEARGADVIIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQM-----P--SGVPVATVGINNGF 118 (150)
T ss_dssp HHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT---------TTS--EE-SSTHHH
T ss_pred HHHHHhccCCCEEEEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhc-----c--CCCCceEEEccCch
Confidence 3345677789984443333333334566777889999874321 11 12222 1 12358888866655
Q ss_pred hhhhHHH
Q 026201 228 TAGFYQE 234 (241)
Q Consensus 228 ~s~~Y~~ 234 (241)
...++.-
T Consensus 119 nAA~~A~ 125 (150)
T PF00731_consen 119 NAALLAA 125 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 173
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=57.28 E-value=76 Score=29.41 Aligned_cols=43 Identities=7% Similarity=0.172 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 150 IVENLRRKRVFLEKAG--ARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 150 i~~~l~~~~~~Le~~G--ad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
+..++++.++.+.+.| ...+.+||||.+.+ +.+.+ +++-++++
T Consensus 222 ~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~~-~~~~~-~~~~~is~ 266 (346)
T PRK00115 222 VLPYMKRIVAELKREHPDVPVILFGKGAGELL-EAMAE-TGADVVGL 266 (346)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCCcHHHH-HHHHh-cCCCEEee
Confidence 4577788888888874 67888999999875 55654 35566654
No 174
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=56.66 E-value=26 Score=33.02 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH 180 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~ 180 (241)
.++.+|.++-|+|+++++.=|+|-.|
T Consensus 167 eeA~~Fv~~TgvD~LAvaiGt~HG~Y 192 (321)
T PRK07084 167 EEVEDFVKKTGVDSLAISIGTSHGAY 192 (321)
T ss_pred HHHHHHHHHhCCCEEeeccccccccc
Confidence 34556788899999999999999764
No 175
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=56.62 E-value=1.7e+02 Score=27.11 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=16.1
Q ss_pred CEEEEEecHHHHh---hhhHHHHHHhcCC
Q 026201 216 LRIGVLAKNAILT---AGFYQEKLQHEDC 241 (241)
Q Consensus 216 ~rVGLLaT~~T~~---s~~Y~~~L~~~G~ 241 (241)
++|+++..+...- ...+++.+++.|+
T Consensus 162 k~va~i~~d~~~g~~~~~~~~~~~~~~G~ 190 (369)
T PRK15404 162 KRIAVLHDKQQYGEGLARSVKDGLKKAGA 190 (369)
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHcCC
Confidence 4899998864322 2235666776663
No 176
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=56.55 E-value=30 Score=32.41 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i 202 (241)
....++.+++.|+|.||-+|-+=+. +|+...+++++|+++-+++++
T Consensus 349 ~~~k~~~i~~~~a~~ivt~Cp~C~~---ql~~~~~~~v~h~~ell~~~l 394 (396)
T PRK11168 349 GAPLFRQIEESGADLVVTDCETCKW---QIEMSTGLECEHPITLLAEAL 394 (396)
T ss_pred HHHHHHHHHhcCCCEEEeCcHhHHH---HHHhcCCCCCCCHHHHHHHHh
Confidence 3556678888999999999965444 444567899999999887765
No 177
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.53 E-value=50 Score=28.78 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCCCCCCCCEEEEEecHH-----HHhhhhHHHHHHhcCC
Q 026201 197 CVAKELKEANMKPLEAGSPLRIGVLAKNA-----ILTAGFYQEKLQHEDC 241 (241)
Q Consensus 197 ~t~~~i~~~~~k~~~~~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~G~ 241 (241)
.+++++.+.|.+ +||+++... .-+..-|++.++++|+
T Consensus 108 ~a~~~L~~~G~~--------~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~ 149 (269)
T cd06287 108 MLLEHLRAQGAR--------QIALIVGSARRNSYLEAEAAYRAFAAEHGM 149 (269)
T ss_pred HHHHHHHHcCCC--------cEEEEeCCcccccHHHHHHHHHHHHHHcCC
Confidence 345566666655 999996432 1122337777777663
No 178
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=56.47 E-value=1.6e+02 Score=26.90 Aligned_cols=73 Identities=18% Similarity=0.064 Sum_probs=39.5
Q ss_pred HHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec----------------------cHHHHHHHHHhcCCCCCCCCCCE
Q 026201 161 LEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAGSPLR 217 (241)
Q Consensus 161 Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I----------------------id~t~~~i~~~~~k~~~~~~~~r 217 (241)
+++.+|++|+=+..+.... .-.+.+..++|++.. ....++.+.+.+. +|
T Consensus 63 i~~~~V~aiiG~~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~--------~~ 134 (360)
T cd06357 63 LREDGVRVIFGCYTSSSRKAVLPVVERHDALLWYPTLYEGFEYSPNVIYTGAAPNQNSVPLADYLLRHYG--------KR 134 (360)
T ss_pred HhhCCCcEEEeCccHHHHHHHHHHHHhcCceEEeCCCccCCcccCCEEEeCCCcHHHHHHHHHHHHhcCC--------cE
Confidence 3457888887666655432 222333335554421 1234455554432 38
Q ss_pred EEEEecHHHH---hhhhHHHHHHhcCC
Q 026201 218 IGVLAKNAIL---TAGFYQEKLQHEDC 241 (241)
Q Consensus 218 VGLLaT~~T~---~s~~Y~~~L~~~G~ 241 (241)
|++++.+... ....|.+.+++.|+
T Consensus 135 v~~i~~d~~~g~~~~~~~~~~~~~~G~ 161 (360)
T cd06357 135 VFLVGSNYIYPYESNRIMRDLLEQRGG 161 (360)
T ss_pred EEEECCCCcchHHHHHHHHHHHHHcCC
Confidence 9999755432 23467788877763
No 179
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=56.37 E-value=1.3e+02 Score=25.83 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=42.4
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh--HHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGS 214 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~ 214 (241)
.++.|...++|.|++........ ..+++ ..++|++-+ ...+++.+.+.+.+ ...
T Consensus 49 ~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~-~~giPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~---~~~ 124 (268)
T cd06306 49 QLEDCAAWGADAILLGAVSPDGLNEILQQV-AASIPVIALVNDINSPDITAKVGVSWYEMGYQAGEYLAQRHPK---GSK 124 (268)
T ss_pred HHHHHHHcCCCEEEEcCCChhhHHHHHHHH-HCCCCEEEeccCCCCcceeEEecCChHHHHHHHHHHHHHHhhc---CCC
Confidence 34567788999888865544433 34433 356776533 12334445555431 112
Q ss_pred CCEEEEEecHH-----HHhhhhHHHHHHhcC
Q 026201 215 PLRIGVLAKNA-----ILTAGFYQEKLQHED 240 (241)
Q Consensus 215 ~~rVGLLaT~~-----T~~s~~Y~~~L~~~G 240 (241)
.++|++++-+. ..+..-|.+.+++.|
T Consensus 125 ~~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~ 155 (268)
T cd06306 125 PAKVAWFPGPKGAGWVKAVEKGFRDALAGSA 155 (268)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhhcC
Confidence 35999985321 112233667776655
No 180
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=56.36 E-value=41 Score=31.41 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=60.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
-+.|.+.||..|....++|..+++...+. .++.+..++..++ +++.. .. . ....+.+
T Consensus 96 ~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei-~~~~~-------~~------g--------~~~~e~l 153 (351)
T TIGR03700 96 ATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEI-HHFSK-------IS------G--------LPTEEVL 153 (351)
T ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHH-HHHHH-------Hc------C--------CCHHHHH
Confidence 46899999999987788999999888876 3444444331111 00100 00 0 0123445
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccH--HHHHHHHHhcCC
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE--CVAKELKEANMK 208 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid--~t~~~i~~~~~k 208 (241)
+.|.++|+|.+. +|++-.+.+++.+...-.=..--+ .+++.+++.|++
T Consensus 154 ~~LkeAGld~~~--~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~ 203 (351)
T TIGR03700 154 DELKEAGLDSMP--GGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLK 203 (351)
T ss_pred HHHHHcCCCcCC--CCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 689999999654 667666666666543211111112 467777777764
No 181
>PTZ00325 malate dehydrogenase; Provisional
Probab=56.25 E-value=35 Score=31.92 Aligned_cols=23 Identities=17% Similarity=-0.042 Sum_probs=15.9
Q ss_pred ccCCeEEEEeCCChHHHHHHHHH
Q 026201 78 NQANTVGIVGGASVDSTLNLLGK 100 (241)
Q Consensus 78 ~~~k~IGIIGGmGp~AT~~fy~k 100 (241)
+.|++|+|+|-.|-..+.-.|..
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l 28 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLL 28 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHH
Confidence 45889999975577666655543
No 182
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=56.18 E-value=89 Score=24.45 Aligned_cols=79 Identities=10% Similarity=0.060 Sum_probs=45.6
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
|++|-++=|.|- +|--+.+++.+..... .+++-+...+ +.+...
T Consensus 1 MkkILlvCg~G~-STSlla~k~k~~~~e~-gi~~~i~a~~----------------------------------~~e~~~ 44 (104)
T PRK09590 1 MKKALIICAAGM-SSSMMAKKTTEYLKEQ-GKDIEVDAIT----------------------------------ATEGEK 44 (104)
T ss_pred CcEEEEECCCch-HHHHHHHHHHHHHHHC-CCceEEEEec----------------------------------HHHHHH
Confidence 566767766666 5557888886666544 3334332211 111112
Q ss_pred HHHHhCCcEEEEeCCchhhhH--HHHhccCCCCeeec
Q 026201 160 FLEKAGARCIVMPCHLSHIWH--DEVCKGCSVPFLHV 194 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~~--d~l~~~~~vPil~I 194 (241)
.+...++|+|+++-+..|..- .++.+..++|+..|
T Consensus 45 ~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I 81 (104)
T PRK09590 45 AIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQI 81 (104)
T ss_pred hhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEe
Confidence 234457899998877777652 33334568888875
No 183
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=56.06 E-value=30 Score=32.62 Aligned_cols=49 Identities=22% Similarity=0.158 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHH
Q 026201 151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202 (241)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i 202 (241)
.+...+.++.+++.|+|.||-+|-+-+.- |....++|++|+++-+++++
T Consensus 357 ~~i~~~k~~~~~~~~ad~ivt~Cp~C~~q---l~~~~~~~v~H~~ell~~al 405 (407)
T PRK11274 357 YQLRDNKLAALEAGKPEVIVTANIGCQTH---LQSGTRTPVRHWIELVDEAL 405 (407)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCcCHHHH---HcCCCCCceeeHHHHHHHHh
Confidence 33334556777889999999999665544 44456899999999887765
No 184
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=55.76 E-value=22 Score=32.96 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhh----------hHHHHhccCCCCeeeccHH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHI----------WHDEVCKGCSVPFLHVSEC 197 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~----------~~d~l~~~~~vPil~Iid~ 197 (241)
.+.++.|+++|+|.|.+-+-|... +..++++.+++||+...+.
T Consensus 151 ~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI 203 (312)
T PRK10550 151 FEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEI 203 (312)
T ss_pred HHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCc
Confidence 356678999999999997766422 2577888899999987664
No 185
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=55.04 E-value=1.1e+02 Score=25.89 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=38.3
Q ss_pred HHHHHhCCcEEE-EeCCchhhhHHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCCEEE
Q 026201 159 VFLEKAGARCIV-MPCHLSHIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRIG 219 (241)
Q Consensus 159 ~~Le~~Gad~Iv-IaCNTAH~~~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~rVG 219 (241)
+.|...++|.|+ .+++.....+.++.+ .++|++-+ ...+++.+.+.|.+ ||+
T Consensus 45 ~~l~~~~vdgii~~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g~~--------~i~ 115 (261)
T cd06272 45 DLFKENRFDGVIIFGESASDVEYLYKIK-LAIPVVSYGVDYDLKYPIVNVDNEKAMELAVLYLAEKGHK--------KIA 115 (261)
T ss_pred HHHHHcCcCEEEEeCCCCChHHHHHHHH-cCCCEEEEcccCCCCCCEEEEChHHHHHHHHHHHHHcCch--------hEE
Confidence 456777898665 445543333444432 23443322 23345555555544 999
Q ss_pred EEecHHH-----HhhhhHHHHHHhcC
Q 026201 220 VLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 220 LLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
+++.... .+..-|++.++++|
T Consensus 116 ~i~~~~~~~~~~~R~~gf~~~~~~~~ 141 (261)
T cd06272 116 YIGDLSLDRRQRKRFKGFLETCDENG 141 (261)
T ss_pred EeecccccccHHHHHHHHHHHHHHcC
Confidence 9964432 11233667776665
No 186
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=54.97 E-value=63 Score=29.51 Aligned_cols=103 Identities=18% Similarity=0.110 Sum_probs=58.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhh-hcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELL-SHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll-~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (241)
-+.|.|.||-.|....++|..+++...+. ..+.+..++..++ +.+. ..+. ...+.
T Consensus 53 ~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~-~~~~~~~g~----------------------~~~e~ 109 (309)
T TIGR00423 53 ATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEV-YFLAKNEGL----------------------SIEEV 109 (309)
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHH-HHHHHHcCC----------------------CHHHH
Confidence 47899999998887888888888888776 3344443331111 0000 0000 02345
Q ss_pred HHHHHHhCCcEEEEeCCchhhhHHHHhccC-C--CCeeeccHHHHHHHHHhcCC
Q 026201 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGC-S--VPFLHVSECVAKELKEANMK 208 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~-~--vPil~Iid~t~~~i~~~~~k 208 (241)
++.|.++|++.+. .+.+...-+++++.. + .+.-.. ..+++.+++.|++
T Consensus 110 l~~LkeAGl~~i~--~~g~E~l~~~~~~~i~~~~~t~~~~-l~~i~~a~~~Gi~ 160 (309)
T TIGR00423 110 LKRLKKAGLDSMP--GTGAEILDDSVRRKICPNKLSSDEW-LEVIKTAHRLGIP 160 (309)
T ss_pred HHHHHHcCCCcCC--CCcchhcCHHHHHhhCCCCCCHHHH-HHHHHHHHHcCCC
Confidence 5789999999773 333444446666543 2 222222 2567777887765
No 187
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=54.87 E-value=47 Score=31.29 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=63.1
Q ss_pred CCCcceeeccCCCCCccccccCCCCCCCC--------CcchhhccCCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCE
Q 026201 43 PPSSVLLQTDESGKFQESKKSFGSKAAPF--------CSDALLNQANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPF 113 (241)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~ 113 (241)
-|--.++..|...+... .-.|-.-.. -...+|...+++|.+|||--..+..|..-.....+.- ..+++
T Consensus 119 ~Pd~~F~iid~~~~~~~---Nv~s~~f~~~egayL~G~~AA~~sk~~~vG~vgg~~~p~v~~f~~gF~~Gak~~np~i~v 195 (345)
T COG1744 119 YPDVKFVIIDGVVKKED---NVASYVFREYEGAYLAGVAAAKMSKSGKVGFVGGMDIPEVNRFINGFLAGAKSVNPDIKV 195 (345)
T ss_pred CCCCEEEEecCccCCCC---ceEEEEeccccHHHHHHHHHHHhhcCCceeEEecccchhhHHHHHHHHHHHHhhCCCccE
Confidence 46666777776655443 111111111 1344555577899999998888888887666665543 22333
Q ss_pred EEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 114 LLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 114 vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
...-.. ++ .|.++ -++++..|.++|||+|.-++.+++.-
T Consensus 196 ~v~~~g-----------sf------------~D~~k----~k~~a~~li~~GaDVI~~~ag~~~~g 234 (345)
T COG1744 196 KVVYVG-----------SF------------SDPAK----GKEAANALIDQGADVIYPAAGGTGVG 234 (345)
T ss_pred EEEEec-----------Cc------------cChHH----HHHHHHHHHhcCCCEEEecCCCCcch
Confidence 321100 11 11111 12356789999999999999988864
No 188
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=54.79 E-value=32 Score=33.41 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhc--cCCCCeeeccHHHHHH
Q 026201 147 DSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCK--GCSVPFLHVSECVAKE 201 (241)
Q Consensus 147 ~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~--~~~vPil~Iid~t~~~ 201 (241)
.+.-.+.....++.+++.|+|.||-+|-+=+.-++...+ ..++|+.|+++-+++.
T Consensus 429 ~e~s~~~~~~k~~~~~~~ga~~ivt~Cp~C~~ql~~~~~~~~~~~~v~h~~ell~~~ 485 (486)
T PRK06259 429 PEIAEALGKRKAEMIRETGADYVITVCPFCEYHIRDSLKKYSEDIPVMNIVSLLDKV 485 (486)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCccHHHHHHHHHHhcCCCCeeeeHHHHHHhh
Confidence 344444455567778899999999999876665544332 3589999998877654
No 189
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.61 E-value=1.8e+02 Score=27.91 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=36.8
Q ss_pred hCCcEEEEeCCc--hhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHH-hhhhHHHHHHhcC
Q 026201 164 AGARCIVMPCHL--SHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL-TAGFYQEKLQHED 240 (241)
Q Consensus 164 ~Gad~IvIaCNT--AH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~-~s~~Y~~~L~~~G 240 (241)
.++|++|++.-- -|.++...+ ..++|+++=++-..+..... .+.+.|||-||.|-= .+.+-...|+..|
T Consensus 77 ~~~D~Vv~s~Gi~~~~~~~~~a~-~~gi~v~~~~e~~~~~~~~~-------~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 77 EDTDLVVTSPGWRPDAPLLAAAA-DAGIPVWGEVELAWRLRDPD-------RPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred CCCCEEEECCCcCCCCHHHHHHH-HCCCeecchHHHHHHhhhcc-------CCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 357888776532 233333333 45799987555433322111 012379999998733 3344455555544
No 190
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=54.27 E-value=91 Score=32.49 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=38.1
Q ss_pred CCcEEEEeCC--chhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHH-hhhhHHHHHHhcC
Q 026201 165 GARCIVMPCH--LSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL-TAGFYQEKLQHED 240 (241)
Q Consensus 165 Gad~IvIaCN--TAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~-~s~~Y~~~L~~~G 240 (241)
++|+||+--- -.|+.+...+ ..++|+++=++...+..++ .+.|||-||.|-- .+.+-...|++.|
T Consensus 63 ~~d~vV~SpgI~~~~p~~~~a~-~~gi~v~~~~el~~~~~~~----------~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 63 EDAVVVYSSSISKDNVEYLSAK-SRGNRLVHRAELLAELMQE----------QISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred CCCEEEECCCcCCCCHHHHHHH-HCCCcEEeHHHHHHHHHcC----------CCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 6888874211 1245554443 3589999988876554321 1289999998732 2334445555544
No 191
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=54.23 E-value=45 Score=32.01 Aligned_cols=88 Identities=10% Similarity=0.197 Sum_probs=53.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
+++||||-.-...|=-||.+.+.+..+ ..+++++.-+- +..+-...|.+ +++
T Consensus 135 p~~I~viTs~~gAa~~D~~~~~~~r~p---~~~~~~~~~~v---------------------QG~~A~~~i~~----al~ 186 (438)
T PRK00286 135 PKRIGVITSPTGAAIRDILTVLRRRFP---LVEVIIYPTLV---------------------QGEGAAASIVA----AIE 186 (438)
T ss_pred CCEEEEEeCCccHHHHHHHHHHHhcCC---CCeEEEecCcC---------------------cCccHHHHHHH----HHH
Confidence 789999999999998899998876543 24566654110 11222233433 334
Q ss_pred HHHHhCCcEEEEeCCchh---hh-H--HHHhc---cCCCCeeecc
Q 026201 160 FLEKAGARCIVMPCHLSH---IW-H--DEVCK---GCSVPFLHVS 195 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH---~~-~--d~l~~---~~~vPil~Ii 195 (241)
.+...++|+|||+==--. -| | +.|.. .+++|||+-|
T Consensus 187 ~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 187 RANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAV 231 (438)
T ss_pred HhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEec
Confidence 555556899999854333 23 2 22332 4689998753
No 192
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.98 E-value=51 Score=28.18 Aligned_cols=72 Identities=10% Similarity=0.161 Sum_probs=37.7
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCCEEE
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPLRIG 219 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~rVG 219 (241)
+.|...++|.|++.-+ .......+++ .++|++.+ ...+++.+.+.|.+ +|+
T Consensus 44 ~~l~~~~vdGiI~~~~-~~~~~~~l~~-~~~PvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~--------~i~ 113 (265)
T cd01543 44 RWLKDWQGDGIIARID-DPEMAEALQK-LGIPVVDVSGSREKPGIPRVTTDNAAIGRMAAEHFLERGFR--------HFA 113 (265)
T ss_pred hhccccccceEEEECC-CHHHHHHHhh-CCCCEEEEeCccCCCCCCEEeeCHHHHHHHHHHHHHHCCCc--------EEE
Confidence 3456677887666422 1123344433 34554333 22345556666554 999
Q ss_pred EEecHHH----HhhhhHHHHHHhcC
Q 026201 220 VLAKNAI----LTAGFYQEKLQHED 240 (241)
Q Consensus 220 LLaT~~T----~~s~~Y~~~L~~~G 240 (241)
+++.+.. .+-.-|++.++++|
T Consensus 114 ~i~~~~~~~~~~R~~gf~~~~~~~~ 138 (265)
T cd01543 114 FYGLPGARWSDEREEAFRQLVAEAG 138 (265)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHHcC
Confidence 9975432 11233677777665
No 193
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=53.87 E-value=1.2e+02 Score=26.11 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=48.0
Q ss_pred HHHHHHHhCCcEEEEeCCchh--------hhHHHHhccCCCCee---ecc-HHHHHHHHHhcCCCCCCCCCCEEEEEecH
Q 026201 157 KRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL---HVS-ECVAKELKEANMKPLEAGSPLRIGVLAKN 224 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH--------~~~d~l~~~~~vPil---~Ii-d~t~~~i~~~~~k~~~~~~~~rVGLLaT~ 224 (241)
.++.+++.||+.+.+....+. .+..++.+.+++|+. +|- ...++.+.+.|.. +| +++|.
T Consensus 33 ~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~--------~v-vlgs~ 103 (230)
T TIGR00007 33 AAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVD--------RV-IIGTA 103 (230)
T ss_pred HHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCC--------EE-EEChH
Confidence 445679999998888766655 245777777788754 222 2445666666664 55 67876
Q ss_pred HHHhhhhHHHHHHhcC
Q 026201 225 AILTAGFYQEKLQHED 240 (241)
Q Consensus 225 ~T~~s~~Y~~~L~~~G 240 (241)
.--....+.+..++.|
T Consensus 104 ~l~d~~~~~~~~~~~g 119 (230)
T TIGR00007 104 AVENPDLVKELLKEYG 119 (230)
T ss_pred HhhCHHHHHHHHHHhC
Confidence 6555566666665543
No 194
>PRK10444 UMP phosphatase; Provisional
Probab=53.59 E-value=1.2e+02 Score=26.90 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhh---hHHHHhc-cCCCC---eeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCK-GCSVP---FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~---~~d~l~~-~~~vP---il~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T 226 (241)
..+.+++|.+.|..++++.-|+... +.++++. .++++ |+.=..++++++++.+ .++|-++|+++.
T Consensus 22 a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~~--------~~~v~~~g~~~l 93 (248)
T PRK10444 22 AAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQE--------GKKAYVIGEGAL 93 (248)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhCC--------CCEEEEEcCHHH
Confidence 4456678999999888877665533 3455544 23333 4444556677777642 237999999654
No 195
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=52.95 E-value=26 Score=32.06 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=78.0
Q ss_pred cccccccCCCCccccCCCcceeeccCCCCCccccccCCCCCCCCCcchhhc--cCCeEEEEeCCChHHHHHHHHHHHHHh
Q 026201 28 TLSRTRLNSNPLLAMPPSSVLLQTDESGKFQESKKSFGSKAAPFCSDALLN--QANTVGIVGGASVDSTLNLLGKLVQLS 105 (241)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~k~IGIIGGmGp~AT~~fy~kI~~~t 105 (241)
-++-||| |.--.+++.+. +|.|---.-++.+-|-..+-..|+ .|..|-|=||- .....+.++|++..
T Consensus 86 ~~yH~~s----V~Rga~~~llv-----~DlPFgtyeS~~sda~knAv~vmk~~g~~~vK~EgGs--~~~~~~~~~l~erg 154 (306)
T KOG2949|consen 86 MLYHCRS----VARGAKRPLLV-----GDLPFGTYESSWSDAVKNAVRVMKEGGMDAVKLEGGS--NSRITAAKRLVERG 154 (306)
T ss_pred HHHHHHH----HHccCCCceEE-----EecCcccccccHHHHHHHHHHHHHhcCCceEEEccCc--HHHHHHHHHHHHcC
Confidence 4455665 22235667665 455544443444434445666664 56677787776 44456666665543
Q ss_pred ccC-CCCCEEEecCccchHH--hhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHH
Q 026201 106 GEE-NDFPFLLCSDPLLNKE--LLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDE 182 (241)
Q Consensus 106 ~~d-~~~~~vi~S~p~i~d~--ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~ 182 (241)
-.- .|+-+. |.. ++++ . +.+. .+.... ..+.+.+..|++.||-.+|+-|- .|..++.
T Consensus 155 ipV~gHvGLT-------PQ~v~~lGG---y-------k~QG-r~~~~a-~~l~EtAmqLqk~Gc~svvlECv-P~~~A~~ 214 (306)
T KOG2949|consen 155 IPVMGHVGLT-------PQAVSVLGG---Y-------KPQG-RNIASA-VKLVETAMQLQKAGCFSVVLECV-PPPVAAA 214 (306)
T ss_pred CceeeeccCC-------hhhhhhccC---c-------Cccc-hhHHHH-HHHHHHHHHHHhcccceEeeecC-ChHHHHH
Confidence 221 222111 221 1111 0 0000 111222 23556677899999999999995 6888999
Q ss_pred HhccCCCCeeecc
Q 026201 183 VCKGCSVPFLHVS 195 (241)
Q Consensus 183 l~~~~~vPil~Ii 195 (241)
+-...+||-|+|.
T Consensus 215 iTs~lsiPTIGIG 227 (306)
T KOG2949|consen 215 ITSALSIPTIGIG 227 (306)
T ss_pred HHhccCCcceeec
Confidence 9999999999873
No 196
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=52.78 E-value=28 Score=32.10 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhH------------HHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWH------------DEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~------------d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
++.+|.++-|+|+++++.=|+|-.| .+|++.+++|++ ++.+.-.+.+.+.|+.
T Consensus 162 ea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~ 231 (288)
T TIGR00167 162 EAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVV 231 (288)
T ss_pred HHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 4557888899999999999999644 345677788865 4556666666666665
No 197
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=52.18 E-value=1e+02 Score=28.16 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=24.7
Q ss_pred HHHHHH-hCCcEEEEeCCchhhhH-HHHhccCCCCeeec
Q 026201 158 RVFLEK-AGARCIVMPCHLSHIWH-DEVCKGCSVPFLHV 194 (241)
Q Consensus 158 ~~~Le~-~Gad~IvIaCNTAH~~~-d~l~~~~~vPil~I 194 (241)
++.|.. -|+++|+-++++..... ..+-+..++|+|..
T Consensus 61 a~~li~~d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 99 (357)
T cd06337 61 AQELILTDKVDLLLAGGTPDTTNPVSDQCEANGVPCIST 99 (357)
T ss_pred HHHHHhccCccEEEecCCcchhhHHHHHHHHhCCCeEEe
Confidence 344554 48999998888776643 45555667887763
No 198
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=51.82 E-value=51 Score=29.44 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCcEEEEe
Q 026201 154 LRRKRVFLEKAGARCIVMP 172 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIa 172 (241)
+.+.++.|+++|||+|++.
T Consensus 178 ~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 178 IVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 3445578899999999986
No 199
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=51.77 E-value=60 Score=29.79 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhh-----------HHHHhccCCCCeeecc-----HHHHHHHHHhcCCCCCCCCCCEEE
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIW-----------HDEVCKGCSVPFLHVS-----ECVAKELKEANMKPLEAGSPLRIG 219 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~-----------~d~l~~~~~vPil~Ii-----d~t~~~i~~~~~k~~~~~~~~rVG 219 (241)
++.++.++.|||+++++-=|.|.. +.++++.+++|++=+. +.-++.+.+.|.. +|.
T Consensus 157 ea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~--------kin 228 (281)
T PRK06806 157 EAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIR--------KIN 228 (281)
T ss_pred HHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCc--------EEE
Confidence 344555678999999977777753 3467777889988655 3445556666665 776
Q ss_pred EE
Q 026201 220 VL 221 (241)
Q Consensus 220 LL 221 (241)
+.
T Consensus 229 v~ 230 (281)
T PRK06806 229 VA 230 (281)
T ss_pred Eh
Confidence 54
No 200
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=51.61 E-value=1.2e+02 Score=25.39 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=50.1
Q ss_pred CCcEEEEeCC-chhhhHHHHhc-----cCCCCeeeccHHHHHHHHHhcCCCCCC-----------------CCCCEEEEE
Q 026201 165 GARCIVMPCH-LSHIWHDEVCK-----GCSVPFLHVSECVAKELKEANMKPLEA-----------------GSPLRIGVL 221 (241)
Q Consensus 165 Gad~IvIaCN-TAH~~~d~l~~-----~~~vPil~Iid~t~~~i~~~~~k~~~~-----------------~~~~rVGLL 221 (241)
..|.|++..- .+..+++.+.+ ..+++++-|.+.|++.+++.|.++... ..+.+|.++
T Consensus 49 ~~~~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~ 128 (239)
T cd06578 49 EYDWLIFTSPNAVEAFFEALEELGLRALAGLKIAAVGPKTAEALREAGLTADFVPEEGDSEGLLELLELQDGKGKRILRP 128 (239)
T ss_pred CCCEEEEECHHHHHHHHHHHHhhCCccccCCEEEEECHHHHHHHHHcCCCceeCCCccCHHHHHHHHHhcCCCCCEEEEE
Confidence 6788888764 44556677764 357899999999999999988764321 145677776
Q ss_pred ecHHHHhhhhHHHHHHhcC
Q 026201 222 AKNAILTAGFYQEKLQHED 240 (241)
Q Consensus 222 aT~~T~~s~~Y~~~L~~~G 240 (241)
..... ...+.+.|+++|
T Consensus 129 ~g~~~--~~~l~~~L~~~g 145 (239)
T cd06578 129 RGGRA--REDLAEALRERG 145 (239)
T ss_pred cCcch--hHHHHHHHHHCC
Confidence 65542 345666676665
No 201
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=51.29 E-value=1.1e+02 Score=25.50 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 026201 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR 167 (241)
Q Consensus 88 GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad 167 (241)
|.+...|.+..+++-+..... .+++|+.. .+..|.. ...+.+.+.+.+.+.++.+.+.|++
T Consensus 50 Gi~G~tt~~~~~rl~~~l~~~-~pd~Vii~---------~GtND~~---------~~~~~~~~~~~l~~li~~~~~~~~~ 110 (191)
T PRK10528 50 SISGDTSQQGLARLPALLKQH-QPRWVLVE---------LGGNDGL---------RGFPPQQTEQTLRQIIQDVKAANAQ 110 (191)
T ss_pred CcCcccHHHHHHHHHHHHHhc-CCCEEEEE---------eccCcCc---------cCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 777788888887776654332 56676655 1112221 1124566777788888888888999
Q ss_pred EEEEeC----Cchhh-------hHHHHhccCCCCeeecc
Q 026201 168 CIVMPC----HLSHI-------WHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 168 ~IvIaC----NTAH~-------~~d~l~~~~~vPil~Ii 195 (241)
.|++.. +-... +++++.+..++|+++..
T Consensus 111 ~ill~~~~P~~~~~~~~~~~~~~~~~~a~~~~v~~id~~ 149 (191)
T PRK10528 111 PLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDIPLLPFF 149 (191)
T ss_pred EEEEEeecCCcccHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 888732 11111 13445666778877753
No 202
>PRK07360 FO synthase subunit 2; Reviewed
Probab=51.25 E-value=63 Score=30.53 Aligned_cols=104 Identities=16% Similarity=0.058 Sum_probs=60.5
Q ss_pred CCeEEEEeCCChHHH-HHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDST-LNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT-~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (241)
-+.|.|.||..|.-. .+||..+++...+. .++.+..+|..++ +++.. +. .....+.
T Consensus 108 ~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei-~~~~~---~~------------------G~~~~e~ 165 (371)
T PRK07360 108 ATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEV-YFAAR---ED------------------GLSYEEV 165 (371)
T ss_pred CCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHH-HHHHh---hc------------------CCCHHHH
Confidence 578999999999876 89999998888875 3344443332211 11110 00 0012345
Q ss_pred HHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeee--ccHHHHHHHHHhcCC
Q 026201 158 RVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLH--VSECVAKELKEANMK 208 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~--Iid~t~~~i~~~~~k 208 (241)
++.|.++|+|.+. .|+... .+++++...-...+ ---.+++.+++.|++
T Consensus 166 l~~LkeAGld~~~---~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~ 216 (371)
T PRK07360 166 LKALKDAGLDSMP---GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLP 216 (371)
T ss_pred HHHHHHcCCCcCC---CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence 6789999999983 565543 46676543211111 113566777777764
No 203
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=51.13 E-value=1.2e+02 Score=26.99 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhh---HHHHhccCCCC-----eeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIW---HDEVCKGCSVP-----FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~---~d~l~~~~~vP-----il~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~ 225 (241)
.+.+++|.+.|..++++.-|+.... .+.+++ .+++ ++.=..++++++++... ..++|-++|+++
T Consensus 24 ~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~-~G~~~~~~~i~ts~~~~~~~l~~~~~------~~~~v~~iG~~~ 95 (279)
T TIGR01452 24 PELLDRLARAGKAALFVTNNSTKSRAEYALKFAR-LGFNGLAEQLFSSALCAARLLRQPPD------APKAVYVIGEEG 95 (279)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHH-cCCCCChhhEecHHHHHHHHHHhhCc------CCCEEEEEcCHH
Confidence 4456788899988888776654432 345543 2332 33334566777776321 124899999975
No 204
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=50.87 E-value=1.5e+02 Score=25.05 Aligned_cols=17 Identities=12% Similarity=0.010 Sum_probs=11.9
Q ss_pred HHHHHHhCCcEEEEeCC
Q 026201 158 RVFLEKAGARCIVMPCH 174 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCN 174 (241)
++.|.+.++|.|++.+.
T Consensus 49 i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 49 VENFIAQGVDAIIVVPV 65 (272)
T ss_pred HHHHHHcCCCEEEEecC
Confidence 34567789998887543
No 205
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=50.74 E-value=1e+02 Score=27.67 Aligned_cols=89 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeC-----------------------------CchhhhHH--HHhccCCCCeeeccHHHH
Q 026201 151 VENLRRKRVFLEKAGARCIVMPC-----------------------------HLSHIWHD--EVCKGCSVPFLHVSECVA 199 (241)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvIaC-----------------------------NTAH~~~d--~l~~~~~vPil~Iid~t~ 199 (241)
.+.-.+.++.|++.|++.+.+|+ |...+++. .++...++|++-|.+.|+
T Consensus 27 ~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~~~~~~~~~~~AVG~~TA 106 (266)
T PRK08811 27 SGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVRAAHRLLPLQRPARAHWLSVGEGTA 106 (266)
T ss_pred HHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHHHHHHHHhcccCccCCeEEEECHHHH
Q ss_pred HHHHHhcCCCCCC----------------CCCCEEEEEecHHHHhhhhHHHHHHhcCC
Q 026201 200 KELKEANMKPLEA----------------GSPLRIGVLAKNAILTAGFYQEKLQHEDC 241 (241)
Q Consensus 200 ~~i~~~~~k~~~~----------------~~~~rVGLLaT~~T~~s~~Y~~~L~~~G~ 241 (241)
+++++.|+++.-. ...++|.++-..+.. +...+.|.+.|+
T Consensus 107 ~aL~~~G~~~~~~P~~~~se~Ll~l~~~~~~g~~vLi~rg~~gr--~~L~~~L~~~G~ 162 (266)
T PRK08811 107 RALQACGIDEVVRPTRMDSEGLLALPLAQAPLQAVGLITAPGGR--GLLAPTLQQRGA 162 (266)
T ss_pred HHHHHcCCCceeCCCCCCcHHHHhChhhhCCCCEEEEEeCCCcH--HHHHHHHHHCCC
No 206
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=50.69 E-value=97 Score=27.22 Aligned_cols=37 Identities=8% Similarity=-0.033 Sum_probs=21.5
Q ss_pred HHHHHHHh-CCcEEEEeCCchhh--hHHHHhccCCCCeeec
Q 026201 157 KRVFLEKA-GARCIVMPCHLSHI--WHDEVCKGCSVPFLHV 194 (241)
Q Consensus 157 ~~~~Le~~-Gad~IvIaCNTAH~--~~d~l~~~~~vPil~I 194 (241)
.++.|.+. +|+.|+.++-+.+. ..+.+. ..++|+|..
T Consensus 56 ~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~-~~~ip~v~~ 95 (333)
T cd06332 56 AARKLIEQDKVDVVVGPVFSNVALAVVPSLT-ESGTFLISP 95 (333)
T ss_pred HHHHHHHHcCCcEEEcCCccHHHHHHHHHHh-hcCCeEEec
Confidence 34455555 99999987554442 234333 346776664
No 207
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=50.66 E-value=29 Score=30.48 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCc-hh-----hhHHHHhccCCCCee
Q 026201 152 ENLRRKRVFLEKAGARCIVMPCHL-SH-----IWHDEVCKGCSVPFL 192 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvIaCNT-AH-----~~~d~l~~~~~vPil 192 (241)
+.+.+.++.+...|+|.|.+--.| .+ .+.+.+++.+++|++
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvi 57 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVI 57 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEE
Confidence 334556678899999999997444 22 134777887888877
No 208
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=50.36 E-value=1.6e+02 Score=24.96 Aligned_cols=75 Identities=11% Similarity=-0.001 Sum_probs=39.0
Q ss_pred HHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeec-------------------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV-------------------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 157 ~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~I-------------------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
.++.|...++|.|++ +++.....+.++.+ .++|++-+ ...+++++.+.|. +
T Consensus 47 ~i~~l~~~~vdgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~--------~ 117 (264)
T cd06274 47 TVETLIARQVDALIVAGSLPPDDPYYLCQK-AGLPVVALDRPGDPSRFPSVVSDNRDGAAELTRELLAAPP--------E 117 (264)
T ss_pred HHHHHHHcCCCEEEEcCCCCchHHHHHHHh-cCCCEEEecCccCCCCCCEEEEccHHHHHHHHHHHHHCCC--------C
Confidence 345677889996665 45432222444433 23454333 1234555555544 3
Q ss_pred EEEEEecHHH-----HhhhhHHHHHHhcC
Q 026201 217 RIGVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 217 rVGLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
+|++++.... -+..=|.+.++++|
T Consensus 118 ~i~~i~~~~~~~~~~~R~~gf~~~~~~~~ 146 (264)
T cd06274 118 EVLFLGGLPELSPSRERLAGFRQALADAG 146 (264)
T ss_pred cEEEEeCCCcccchHHHHHHHHHHHHHcC
Confidence 8999954321 12333677777665
No 209
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=50.31 E-value=1.6e+02 Score=25.09 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=39.1
Q ss_pred HHHHHHHhCCcEEEEeCCch---hhhHHHHhccCCCCeeecc-----------------------HHHHHHHHHhcCCCC
Q 026201 157 KRVFLEKAGARCIVMPCHLS---HIWHDEVCKGCSVPFLHVS-----------------------ECVAKELKEANMKPL 210 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTA---H~~~d~l~~~~~vPil~Ii-----------------------d~t~~~i~~~~~k~~ 210 (241)
.++.|...++|.|++..... ...++++.+ .++|++.+- ...++.+.+..
T Consensus 47 ~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~-~~iPvV~~~~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~~---- 121 (273)
T cd06309 47 AIRSFIAQGVDVIILAPVVETGWDPVLKEAKA-AGIPVILVDRGVDVKDDSLYVTFIGSDFVEEGRRAADWLAKAT---- 121 (273)
T ss_pred HHHHHHHcCCCEEEEcCCccccchHHHHHHHH-CCCCEEEEecCcCCccCcceeeEecCChHHHHHHHHHHHHHHc----
Confidence 34567778899777744322 233444433 344443331 12344555541
Q ss_pred CCCCCCEEEEEecHH-----HHhhhhHHHHHHhc
Q 026201 211 EAGSPLRIGVLAKNA-----ILTAGFYQEKLQHE 239 (241)
Q Consensus 211 ~~~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~ 239 (241)
...++|++++... ..+..-|.+.|+++
T Consensus 122 --~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~ 153 (273)
T cd06309 122 --GGKGNIVELQGTVGSSVAIDRKKGFAEVIKKY 153 (273)
T ss_pred --CCCceEEEEeCCCCCchHHHHHHHHHHHHHHC
Confidence 1234899996532 23344477777665
No 210
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=50.16 E-value=1.1e+02 Score=25.87 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=54.0
Q ss_pred HHHhCCcEEEEeC-CchhhhHHHHh-----ccCCCCeeeccHHHHHHHHHhcCCCC--CC---------------CCCCE
Q 026201 161 LEKAGARCIVMPC-HLSHIWHDEVC-----KGCSVPFLHVSECVAKELKEANMKPL--EA---------------GSPLR 217 (241)
Q Consensus 161 Le~~Gad~IvIaC-NTAH~~~d~l~-----~~~~vPil~Iid~t~~~i~~~~~k~~--~~---------------~~~~r 217 (241)
....+.|.|++.+ |.++.|++.++ ...+.+++-|.+.|++.+++.|+++. +. ..+++
T Consensus 48 ~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 127 (249)
T PRK05928 48 LAALGADWVIFTSKNAVEFLLSALKKKKLKWPKNKKYAAIGEKTALALKKLGGKVVFVPEDGESSELLLELPELLLKGKR 127 (249)
T ss_pred hhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCCCCEEEEECHHHHHHHHHcCCCccccCCCCcChHHHHhChhhhcCCCE
Confidence 3455688888877 44556667665 22357899999999999999887643 11 13567
Q ss_pred EEEEecHHHHhhhhHHHHHHhcCC
Q 026201 218 IGVLAKNAILTAGFYQEKLQHEDC 241 (241)
Q Consensus 218 VGLLaT~~T~~s~~Y~~~L~~~G~ 241 (241)
|.++.... ..+...+.|++.|.
T Consensus 128 ili~~~~~--~~~~l~~~L~~~G~ 149 (249)
T PRK05928 128 VLYLRGNG--GREVLGDTLEERGA 149 (249)
T ss_pred EEEECCCC--CHHHHHHHHHHCCC
Confidence 87776654 45677788887763
No 211
>PRK08185 hypothetical protein; Provisional
Probab=50.15 E-value=38 Score=31.22 Aligned_cols=54 Identities=11% Similarity=0.225 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH-------------HHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH-------------DEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~-------------d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
.++.++.++-|||+++++.=|+|-.| .+|++.+++|++ ++.+.-.+.+.+.|+.
T Consensus 152 eea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~ 223 (283)
T PRK08185 152 EQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVG 223 (283)
T ss_pred HHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCe
Confidence 34445666779999999888888654 345556677764 3445555555566654
No 212
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=49.69 E-value=48 Score=31.55 Aligned_cols=68 Identities=10% Similarity=0.171 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhH-HHHh---ccCCCCeee---------ccHHHHHHHHHhcCCCCCCCCCCEEEE
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWH-DEVC---KGCSVPFLH---------VSECVAKELKEANMKPLEAGSPLRIGV 220 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~-d~l~---~~~~vPil~---------Iid~t~~~i~~~~~k~~~~~~~~rVGL 220 (241)
+.+.+.+|.+.|-.+++.||-|.-+.+ ++|+ ++.++|+|. ++=.++++++++++ -|.|
T Consensus 156 IaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~---------Dvvl 226 (340)
T COG0552 156 IAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGI---------DVVL 226 (340)
T ss_pred HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCC---------CEEE
Confidence 445568999999999999999999875 6665 578999998 44445666666665 4888
Q ss_pred EecHHHHhhh
Q 026201 221 LAKNAILTAG 230 (241)
Q Consensus 221 LaT~~T~~s~ 230 (241)
+=|.|-++.+
T Consensus 227 iDTAGRLhnk 236 (340)
T COG0552 227 IDTAGRLHNK 236 (340)
T ss_pred EeCcccccCc
Confidence 8888877654
No 213
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.45 E-value=1.3e+02 Score=25.33 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=36.7
Q ss_pred HHHHhCCcEEEEeC-CchhhhHHHHhccCCCCeeec--------------------cHHHHHHHHHhcCCCCCCCCCCEE
Q 026201 160 FLEKAGARCIVMPC-HLSHIWHDEVCKGCSVPFLHV--------------------SECVAKELKEANMKPLEAGSPLRI 218 (241)
Q Consensus 160 ~Le~~Gad~IvIaC-NTAH~~~d~l~~~~~vPil~I--------------------id~t~~~i~~~~~k~~~~~~~~rV 218 (241)
.+.+.++|.|++.. ......++++.+ .++|++-+ ...+++++.+.|. ++|
T Consensus 55 ~~~~~~~dgiii~~~~~~~~~~~~~~~-~~ipvV~~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~i 125 (270)
T cd06294 55 MIQQKRVDGFILLYSREDDPIIDYLKE-EKFPFVVIGKPEDDKENITYVDNDNIQAGYDATEYLIKLGH--------KKI 125 (270)
T ss_pred HHHHcCcCEEEEecCcCCcHHHHHHHh-cCCCEEEECCCCCCCCCCCeEEECcHHHHHHHHHHHHHcCC--------ccE
Confidence 34556799877753 222233455533 24444333 1234444555443 399
Q ss_pred EEEecHHHH-----hhhhHHHHHHhcC
Q 026201 219 GVLAKNAIL-----TAGFYQEKLQHED 240 (241)
Q Consensus 219 GLLaT~~T~-----~s~~Y~~~L~~~G 240 (241)
++++..... +..-|++.++++|
T Consensus 126 ~~i~~~~~~~~~~~r~~gf~~~~~~~~ 152 (270)
T cd06294 126 AFVGGDLDLEVTQDRLQGYKQALEDHG 152 (270)
T ss_pred EEecCCcccHHHHHHHHHHHHHHHHcC
Confidence 999743221 2233667776665
No 214
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=49.33 E-value=73 Score=23.72 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhHHHH---hccCCCCeeeccHHHHHHHHHh
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWHDEV---CKGCSVPFLHVSECVAKELKEA 205 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l---~~~~~vPil~Iid~t~~~i~~~ 205 (241)
+..+.+++..+.+++||.|+.....+.+ .+..+||++.+. +-+++-..
T Consensus 18 ~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~--s~~eLG~a 68 (82)
T PRK13602 18 QTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD--SMKKLGKA 68 (82)
T ss_pred HHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC--CHHHHHHH
Confidence 3446788889999999999999765554 566789998875 44666554
No 215
>PLN02645 phosphoglycolate phosphatase
Probab=49.30 E-value=1.7e+02 Score=26.70 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhh---hHHHHhccCCCC-----eeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVP-----FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~---~~d~l~~~~~vP-----il~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~ 225 (241)
..+.++.|.+.|..++++.-|+.+. +++++++ .+++ |+.=...+...+++.+.. +.++|.++|+++
T Consensus 49 a~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~-lGi~~~~~~I~ts~~~~~~~l~~~~~~-----~~~~V~viG~~~ 122 (311)
T PLN02645 49 VPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFES-LGLNVTEEEIFSSSFAAAAYLKSINFP-----KDKKVYVIGEEG 122 (311)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHH-CCCCCChhhEeehHHHHHHHHHhhccC-----CCCEEEEEcCHH
Confidence 3556678999999998888777443 4566644 3332 333334455556554321 234899999975
Q ss_pred H
Q 026201 226 I 226 (241)
Q Consensus 226 T 226 (241)
-
T Consensus 123 ~ 123 (311)
T PLN02645 123 I 123 (311)
T ss_pred H
Confidence 3
No 216
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=49.19 E-value=1.6e+02 Score=27.02 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=54.3
Q ss_pred cCCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHH
Q 026201 79 QANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL 154 (241)
Q Consensus 79 ~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l 154 (241)
++++|+|+. |-|. .++.|.+..... -.+.+|+.|+|.........+. |+.... ....++++.-
T Consensus 83 ~~~ki~vl~Sg~g~-----nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gI-p~~~~~----~~~~~~~~~e--- 149 (280)
T TIGR00655 83 KLKRVAILVSKEDH-----CLGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGI-PFHYIP----ATKDNRVEHE--- 149 (280)
T ss_pred CCcEEEEEEcCCCh-----hHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCC-CEEEcC----CCCcchhhhH---
Confidence 467899996 5553 345555555543 4577788888876542222111 111111 0011222111
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
.+..+.|++.++|+||++- -.+..-+.+-+.++-.++||
T Consensus 150 ~~~~~~l~~~~~Dlivlag-ym~il~~~~l~~~~~~iINi 188 (280)
T TIGR00655 150 KRQLELLKQYQVDLVVLAK-YMQILSPDFVKRYPNKIINI 188 (280)
T ss_pred HHHHHHHHHhCCCEEEEeC-chhhCCHHHHhhccCCEEEe
Confidence 1234678899999999983 33444355555555556665
No 217
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=49.08 E-value=1.3e+02 Score=23.82 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 026201 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR 167 (241)
Q Consensus 88 GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad 167 (241)
|.+...+...+..+.+.... ..+++|+..- +..|.. ...+.+...+.+.+.++.+.+.|++
T Consensus 43 g~~G~~~~~~~~~l~~~~~~-~~pd~v~i~~---------G~ND~~---------~~~~~~~~~~~l~~li~~~~~~~~~ 103 (177)
T cd01822 43 GVSGDTTAGGLARLPALLAQ-HKPDLVILEL---------GGNDGL---------RGIPPDQTRANLRQMIETAQARGAP 103 (177)
T ss_pred CcCCcccHHHHHHHHHHHHh-cCCCEEEEec---------cCcccc---------cCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 55555555666666544433 2556666551 112211 1123456777788888888888999
Q ss_pred EEEEe
Q 026201 168 CIVMP 172 (241)
Q Consensus 168 ~IvIa 172 (241)
+|++.
T Consensus 104 vil~~ 108 (177)
T cd01822 104 VLLVG 108 (177)
T ss_pred EEEEe
Confidence 98873
No 218
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=48.99 E-value=75 Score=30.04 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=63.0
Q ss_pred CCeEEEEe--CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchH---Hhhhc-------CCChhhhhcccCCCCCCCH
Q 026201 80 ANTVGIVG--GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNK---ELLSH-------DRSSFSSLNCKGGGVQLDD 147 (241)
Q Consensus 80 ~k~IGIIG--GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d---~ll~~-------~~~~~~~~~~~~~~~~~d~ 147 (241)
...|||-| |.|=- -+..++.....++.|---|+--||.-|. .|++. ..+|.-+.+... ..+.-
T Consensus 51 a~viGITG~PGaGKS---Tli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~--srG~l 125 (323)
T COG1703 51 AHVIGITGVPGAGKS---TLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSP--SRGTL 125 (323)
T ss_pred CcEEEecCCCCCchH---HHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecC--CCccc
Confidence 56899998 66654 4566666666655332223334666541 23322 123333322211 22233
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHH
Q 026201 148 SLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKEL 202 (241)
Q Consensus 148 ~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i 202 (241)
-.+-....+.+.-|+.+|.|+|+|=+--+=----+|.+..+.-++=++..+...+
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~ 180 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDL 180 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHH
Confidence 3456667788889999999999997654443333344444443333333333333
No 219
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=48.23 E-value=1.9e+02 Score=25.34 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=15.4
Q ss_pred CCEEEEEecH----HHHhhhhHHHHHHhcCC
Q 026201 215 PLRIGVLAKN----AILTAGFYQEKLQHEDC 241 (241)
Q Consensus 215 ~~rVGLLaT~----~T~~s~~Y~~~L~~~G~ 241 (241)
.++|+++..+ +.-..+.+++.+++.|+
T Consensus 135 ~~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~ 165 (334)
T cd06347 135 AKKAAVLYDNSSDYSKGLAKAFKEAFKKLGG 165 (334)
T ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHHcCC
Confidence 3489999632 22223456666766663
No 220
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=48.04 E-value=41 Score=30.92 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH------------HHHhccCCCCee-----eccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH------------DEVCKGCSVPFL-----HVSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~------------d~l~~~~~vPil-----~Iid~t~~~i~~~~~k 208 (241)
.++.+|.++-|+|+++++-=|+|-.| .+|++.+++|++ ++.+.-.+.+.+.|+.
T Consensus 151 e~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~ 221 (276)
T cd00947 151 EEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVC 221 (276)
T ss_pred HHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 34556778889999999999999655 456777788865 3455555566666654
No 221
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=48.01 E-value=30 Score=32.64 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCC-CeeeccHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSV-PFLHVSEC 197 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~v-Pil~Iid~ 197 (241)
|.+.++.|+..|+|+|||=-.-.. ++..+.+..++ ||||-.|-
T Consensus 91 L~DT~~tl~ayg~D~iViRH~~eg-aa~~~a~~~~~~pvINaGDG 134 (316)
T COG0540 91 LADTIRTLSAYGVDAIVIRHPEEG-AARLLAEFSGVNPVINAGDG 134 (316)
T ss_pred HHHHHHHHHhhCCCEEEEeCcccc-HHHHHHHhcCCCceEECCCC
Confidence 445557899999999999732222 23555666677 89998773
No 222
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=47.91 E-value=62 Score=31.88 Aligned_cols=88 Identities=11% Similarity=0.228 Sum_probs=55.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
+++||||-.-...|=-|....+.+.. ...++++|.-.. +..+-..+| .++++
T Consensus 135 p~~IGVITS~tgAairDIl~~~~rR~---P~~~viv~pt~V---------------------QG~~A~~eI----v~aI~ 186 (440)
T COG1570 135 PKKIGVITSPTGAALRDILHTLSRRF---PSVEVIVYPTLV---------------------QGEGAAEEI----VEAIE 186 (440)
T ss_pred CCeEEEEcCCchHHHHHHHHHHHhhC---CCCeEEEEeccc---------------------cCCCcHHHH----HHHHH
Confidence 78999998777776666666654433 446788876221 112222334 34555
Q ss_pred HHHHhC-CcEEEEeCCchhh---h-H-HHH-hc---cCCCCeeecc
Q 026201 160 FLEKAG-ARCIVMPCHLSHI---W-H-DEV-CK---GCSVPFLHVS 195 (241)
Q Consensus 160 ~Le~~G-ad~IvIaCNTAH~---~-~-d~l-~~---~~~vPil~Ii 195 (241)
.+.+.+ +|+|+++=---+. | | ||. .. .+.+|||+-+
T Consensus 187 ~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAV 232 (440)
T COG1570 187 RANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAV 232 (440)
T ss_pred HhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEeec
Confidence 667667 9999998666554 4 3 443 22 4689999864
No 223
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=47.91 E-value=1.2e+02 Score=25.20 Aligned_cols=64 Identities=23% Similarity=0.180 Sum_probs=36.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHH
Q 026201 82 TVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL 161 (241)
Q Consensus 82 ~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L 161 (241)
+.-|+||.|... ..+-+.|.+.. ...+++.+... .+. . . ..+.++.|
T Consensus 2 tylitGG~gglg-~~la~~La~~~----~~~~il~~r~~------------~~~--------~-~-------~~~~i~~l 48 (181)
T PF08659_consen 2 TYLITGGLGGLG-QSLARWLAERG----ARRLILLGRSG------------APS--------A-E-------AEAAIREL 48 (181)
T ss_dssp EEEEETTTSHHH-HHHHHHHHHTT-----SEEEEEESSG------------GGS--------T-T-------HHHHHHHH
T ss_pred EEEEECCccHHH-HHHHHHHHHcC----CCEEEEeccCC------------Ccc--------H-H-------HHHHHHHH
Confidence 456899998874 34555555544 33477766331 000 0 0 12344678
Q ss_pred HHhCCcEEEEeCCchhh
Q 026201 162 EKAGARCIVMPCHLSHI 178 (241)
Q Consensus 162 e~~Gad~IvIaCNTAH~ 178 (241)
++.|+.+.++.|.....
T Consensus 49 ~~~g~~v~~~~~Dv~d~ 65 (181)
T PF08659_consen 49 ESAGARVEYVQCDVTDP 65 (181)
T ss_dssp HHTT-EEEEEE--TTSH
T ss_pred HhCCCceeeeccCccCH
Confidence 89999999999987665
No 224
>PRK05926 hypothetical protein; Provisional
Probab=47.57 E-value=88 Score=29.80 Aligned_cols=104 Identities=15% Similarity=0.054 Sum_probs=61.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEe--cCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLC--SDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~--S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (241)
.+.|.|.||.+|....+||..+++...+. .|.+-++ +..++ .++... ... ...+.
T Consensus 115 ~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~-~p~i~i~a~s~~Ei-~~~~~~--------------~~~-------~~~e~ 171 (370)
T PRK05926 115 ITETHIVAGCFPSCNLAYYEELFSKIKQN-FPDLHIKALTAIEY-AYLSKL--------------DNL-------PVKEV 171 (370)
T ss_pred CCEEEEEeCcCCCCCHHHHHHHHHHHHHh-CCCeeEEECCHHHH-HHHHhh--------------cCC-------CHHHH
Confidence 57899999999998999999998888876 3333332 21111 110000 000 02344
Q ss_pred HHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec--cHHHHHHHHHhcCC
Q 026201 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV--SECVAKELKEANMK 208 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I--id~t~~~i~~~~~k 208 (241)
++.|.++|+|. +++|-+-.+.+++++.+.=....- --.+++.+++.|++
T Consensus 172 l~~LkeAGl~~--~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~ 222 (370)
T PRK05926 172 LQTLKIAGLDS--IPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIP 222 (370)
T ss_pred HHHHHHcCcCc--cCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCc
Confidence 57899999996 677766566677776432111111 11467777888775
No 225
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=47.46 E-value=1.5e+02 Score=26.59 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCcEEEEeCCchhh-----hHHHHhccCCCCeee---ccH-HHHHHHHHhcCCCCCCCCCCEEEEEecH
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGCSVPFLH---VSE-CVAKELKEANMKPLEAGSPLRIGVLAKN 224 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~-----~~d~l~~~~~vPil~---Iid-~t~~~i~~~~~k~~~~~~~~rVGLLaT~ 224 (241)
+.++..++.||++|-+.|..-+. .+..+++.+++||+. |++ .-+..+.+.|.+ -|.|++|.
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD--------~VlLi~~~ 143 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGAD--------AILLIVAA 143 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCC--------EEEEEecc
Confidence 34467789999999887765443 246677788999884 112 234556666766 78899877
No 226
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=46.54 E-value=88 Score=28.36 Aligned_cols=49 Identities=22% Similarity=0.200 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCcEEEEeCCchhh--------hHHHHhccCCCCee-------eccHHHHHHHHH
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL-------HVSECVAKELKE 204 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~~vPil-------~Iid~t~~~i~~ 204 (241)
+.++..++.|||.+++...-.+. ++++|.+.+++|++ .+-..+.+.+.+
T Consensus 85 ~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 85 AYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 34567788899988876554332 35667777777743 333445555543
No 227
>PRK06801 hypothetical protein; Provisional
Probab=46.43 E-value=1.1e+02 Score=28.30 Aligned_cols=54 Identities=13% Similarity=0.248 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH-----------HHHhccCCCCeee-----ccHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH-----------DEVCKGCSVPFLH-----VSECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~-----------d~l~~~~~vPil~-----Iid~t~~~i~~~~~k 208 (241)
.++.++.++.|||+++++--|+|-.+ .++++.+++|++= +-+.-.+.+.+.|..
T Consensus 159 e~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~ 228 (286)
T PRK06801 159 QLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIH 228 (286)
T ss_pred HHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence 34456667899999999988888722 4566677889763 344566667777765
No 228
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=46.14 E-value=24 Score=33.04 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH-------------HHHhccCCCCee
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH-------------DEVCKGCSVPFL 192 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~-------------d~l~~~~~vPil 192 (241)
.++.+|.++-|||+++++.=|+|-.| ++|++.+++|++
T Consensus 158 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLV 208 (307)
T PRK05835 158 KEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLV 208 (307)
T ss_pred HHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEE
Confidence 45567888999999999999999433 456777888865
No 229
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=46.02 E-value=1.6e+02 Score=25.23 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=23.3
Q ss_pred HHHHHHH--hcCCCCCCCCCCEEEEEecHH--H--HhhhhHHHHHHhcCC
Q 026201 198 VAKELKE--ANMKPLEAGSPLRIGVLAKNA--I--LTAGFYQEKLQHEDC 241 (241)
Q Consensus 198 t~~~i~~--~~~k~~~~~~~~rVGLLaT~~--T--~~s~~Y~~~L~~~G~ 241 (241)
+++++.+ +|.+ +||+++.+. + .+..-|++.++++|+
T Consensus 106 a~~~L~~~~~G~~--------~Ia~i~~~~~~~~~~R~~gf~~~l~~~g~ 147 (247)
T cd06276 106 ALQEGLEKLKKYK--------KLILVFPNKTAIPKEIKRGFERFCKDYNI 147 (247)
T ss_pred HHHHHHHHhcCCC--------EEEEEecCccHhHHHHHHHHHHHHHHcCC
Confidence 5667777 7765 999997542 1 223337777877764
No 230
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=45.92 E-value=1.1e+02 Score=26.56 Aligned_cols=65 Identities=8% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCcEEEEeCCc---hhhhHHHHhccCCCC-----eeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHH
Q 026201 155 RRKRVFLEKAGARCIVMPCHL---SHIWHDEVCKGCSVP-----FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNT---AH~~~d~l~~~~~vP-----il~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T 226 (241)
.+.++.|.+.|..++++.=|+ ...+.+.+.+..+++ |+.=...+++.+++.. ..++|.++|+++.
T Consensus 20 ~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~-------~~~~v~v~G~~~~ 92 (236)
T TIGR01460 20 AEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRF-------EGEKVYVIGVGEL 92 (236)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhC-------CCCEEEEECCHHH
Confidence 455667888899988877444 233457777744433 4444566777777642 1248999999763
No 231
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=45.88 E-value=1.9e+02 Score=25.98 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=9.0
Q ss_pred CCCCEEEecCccch
Q 026201 109 NDFPFLLCSDPLLN 122 (241)
Q Consensus 109 ~~~~~vi~S~p~i~ 122 (241)
.-++++...+|...
T Consensus 11 ~li~y~~aG~P~~~ 24 (256)
T TIGR00262 11 AFIPFVTAGDPTLE 24 (256)
T ss_pred eEEEEEeCCCCCHH
Confidence 45667777777653
No 232
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.80 E-value=98 Score=28.66 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=49.5
Q ss_pred eCCChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHh
Q 026201 87 GGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKA 164 (241)
Q Consensus 87 GGmGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~ 164 (241)
|| +.+-=.+|...+++.+++. +..++.+--++. +.. ....+.++ ..+.++.|++.
T Consensus 192 GG-slenR~rf~~EiI~aIR~avG~d~~v~vris~~--~~~----------------~~g~~~ee----a~~ia~~Le~~ 248 (338)
T cd04733 192 GG-SLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA--DFQ----------------RGGFTEED----ALEVVEALEEA 248 (338)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH--HcC----------------CCCCCHHH----HHHHHHHHHHc
Confidence 44 4666677888888888765 445555422110 100 00112232 34566789999
Q ss_pred CCcEEEEeCCch----------------h----hhHHHHhccCCCCeeeccH
Q 026201 165 GARCIVMPCHLS----------------H----IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 165 Gad~IvIaCNTA----------------H----~~~d~l~~~~~vPil~Iid 196 (241)
|+|+|-+-..+. + .+..+|++.+++||+-.-.
T Consensus 249 Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~ 300 (338)
T cd04733 249 GVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGG 300 (338)
T ss_pred CCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCC
Confidence 999998533221 0 1235788888999876543
No 233
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.47 E-value=1.9e+02 Score=24.61 Aligned_cols=36 Identities=11% Similarity=-0.032 Sum_probs=20.0
Q ss_pred HHHHHHHhCCcEEEEeCCchh---hhHHHHhccCCCCeee
Q 026201 157 KRVFLEKAGARCIVMPCHLSH---IWHDEVCKGCSVPFLH 193 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH---~~~d~l~~~~~vPil~ 193 (241)
.++.|...++|.|++...... ..++++.+ -++|++.
T Consensus 52 ~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~-~gIpvV~ 90 (274)
T cd06311 52 QQDLLINRKIDALVILPFESAPLTQPVAKAKK-AGIFVVV 90 (274)
T ss_pred HHHHHHHcCCCEEEEeCCCchhhHHHHHHHHH-CCCeEEE
Confidence 345677889998877654332 23344432 3555544
No 234
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=45.38 E-value=1.1e+02 Score=27.26 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=24.1
Q ss_pred HHHHHHHhCCcEEEEeCCchhh--------hHHHHhccCCCCee
Q 026201 157 KRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~~vPil 192 (241)
.++..++.|||.+++....... ++..|.+.+++|++
T Consensus 84 ~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~ 127 (281)
T cd00408 84 LARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVI 127 (281)
T ss_pred HHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 4456788899988876543332 45667777777765
No 235
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=45.13 E-value=1.1e+02 Score=25.32 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEe---CCch-------------hhhHHHHhccCCCCeeeccHHHHHHHHH
Q 026201 146 DDSLIVENLRRKRVFLEKAGARCIVMP---CHLS-------------HIWHDEVCKGCSVPFLHVSECVAKELKE 204 (241)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvIa---CNTA-------------H~~~d~l~~~~~vPil~Iid~t~~~i~~ 204 (241)
+.++..+.+.+.++.+.+.|++.|++- ++.. ..+.+++.+..++|++++-+...+...+
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~~~~~~~~~~~ 162 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLIDLNAASRALYEA 162 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEEecHHHHHHHHHH
Confidence 456778888889999999999988873 1111 1234667778899999987665444443
No 236
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=45.02 E-value=58 Score=29.63 Aligned_cols=48 Identities=25% Similarity=0.208 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCc--------------h-hhhHHHHhccCCCCe
Q 026201 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHL--------------S-HIWHDEVCKGCSVPF 191 (241)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNT--------------A-H~~~d~l~~~~~vPi 191 (241)
.++.++|++...+.++.|++.|+|.|++---. + .....++++.+++|+
T Consensus 21 ~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~ 83 (254)
T PF03437_consen 21 DGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPV 83 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 34889999999999999999999999986311 1 112367788888874
No 237
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=44.98 E-value=2.1e+02 Score=24.95 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=20.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEec
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLCS 117 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S 117 (241)
.++||++=. ...-.||..+.+...+. ....++++.
T Consensus 26 ~~~I~vi~~---~~~~~f~~~~~~~i~~~~~~~G~~~~~~~ 63 (295)
T PRK10653 26 KDTIALVVS---TLNNPFFVSLKDGAQKEADKLGYNLVVLD 63 (295)
T ss_pred CCeEEEEec---CCCChHHHHHHHHHHHHHHHcCCeEEEec
Confidence 468887742 22346777777666643 455555543
No 238
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=44.93 E-value=47 Score=24.44 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=24.5
Q ss_pred HHHHHHHhCCcEEEEeCCchhh--------hHHHHhccCCCCee
Q 026201 157 KRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~~vPil 192 (241)
+++..++.++|+|||.+...+. +.+.+-..+++|++
T Consensus 94 i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVl 137 (140)
T PF00582_consen 94 IIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVL 137 (140)
T ss_dssp HHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEE
T ss_pred hhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEE
Confidence 3456788999999999988332 33555556666654
No 239
>PRK15063 isocitrate lyase; Provisional
Probab=44.91 E-value=54 Score=32.20 Aligned_cols=106 Identities=16% Similarity=0.135 Sum_probs=55.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhcc-C-CCCCEEEecCccch-HHhhhcCCChhhhhcccCCCCCCC----HHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGE-E-NDFPFLLCSDPLLN-KELLSHDRSSFSSLNCKGGGVQLD----DSLIVE 152 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~-d-~~~~~vi~S~p~i~-d~ll~~~~~~~~~~~~~~~~~~~d----~~~i~~ 152 (241)
.|+.|-+||---..+.++.+||.....+ + ...+++|.-..+.. ..|+....|+.+-.-......+.. ..-+-+
T Consensus 187 ~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~ 266 (428)
T PRK15063 187 EKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQ 266 (428)
T ss_pred ccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccccccccccccCCCccccccccccCHHH
Confidence 5889999998888999999999988764 3 34456665533321 112222122211100000000100 012444
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCchhhh-HHHHhccC
Q 026201 153 NLRRKRVFLEKAGARCIVMPCHLSHIW-HDEVCKGC 187 (241)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~ 187 (241)
.+.+...+. . |||+|-+++.+...- +.++.+.+
T Consensus 267 AI~Ra~AYa-~-GAD~iw~Et~~~d~ee~~~fa~~v 300 (428)
T PRK15063 267 AIARGLAYA-P-YADLIWCETSTPDLEEARRFAEAI 300 (428)
T ss_pred HHHHHHHHh-c-CCCEEEeCCCCCCHHHHHHHHHhh
Confidence 455555554 4 999999997554432 34444443
No 240
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=44.91 E-value=80 Score=29.69 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhh-HHHHhc----cCC-C---CeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIW-HDEVCK----GCS-V---PFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKN 224 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~----~~~-v---Pil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~ 224 (241)
..+.++.|.+.| +-|++.+|-+... -+..++ .++ + -|++=.-+++.++++... ..++|-+||+.
T Consensus 43 s~e~l~~L~~~g-K~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~------~~k~Vyvig~~ 115 (306)
T KOG2882|consen 43 SPEALNLLKSLG-KQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSSAYAIADYLKKRKP------FGKKVYVIGEE 115 (306)
T ss_pred hHHHHHHHHHcC-CcEEEEeCCCcchHHHHHHHHHHhCccccCcccccChHHHHHHHHHHhCc------CCCeEEEecch
Confidence 345667899999 7777777766543 333332 122 2 366666778888877641 34599999998
Q ss_pred HHHhhhhHHHHHHhcCC
Q 026201 225 AILTAGFYQEKLQHEDC 241 (241)
Q Consensus 225 ~T~~s~~Y~~~L~~~G~ 241 (241)
+ ..+.|+++||
T Consensus 116 g------i~~eL~~aG~ 126 (306)
T KOG2882|consen 116 G------IREELDEAGF 126 (306)
T ss_pred h------hhHHHHHcCc
Confidence 8 4566666664
No 241
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=44.78 E-value=1.2e+02 Score=28.13 Aligned_cols=53 Identities=21% Similarity=0.145 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCcEEEE---eCCchh----------h--hHHHHhccCCCCee-----e--ccHHHHHHHHHhcCC
Q 026201 156 RKRVFLEKAGARCIVM---PCHLSH----------I--WHDEVCKGCSVPFL-----H--VSECVAKELKEANMK 208 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvI---aCNTAH----------~--~~d~l~~~~~vPil-----~--Iid~t~~~i~~~~~k 208 (241)
+.++.++++|+|.|-+ +|+.-. . ....+++.+++|++ + -+...++.+.+.|.+
T Consensus 118 ~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~d 192 (334)
T PRK07565 118 DYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGAD 192 (334)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCC
Confidence 4556788899999998 444421 1 23667777788865 1 124566667776655
No 242
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=44.67 E-value=94 Score=24.33 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=49.2
Q ss_pred hhhccCCeEEEEe-CCChHHHHHHHHHHHHHhccC---------CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCC
Q 026201 75 ALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEE---------NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQ 144 (241)
Q Consensus 75 ~~~~~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d---------~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~ 144 (241)
..+.+.+.|=++| |.+...+.++.-|+.+..... .|-+....+ +.++.-... ..
T Consensus 8 ~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~-----------~~~~vi~is-----~~ 71 (153)
T cd05009 8 EKLKEAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVD-----------EGTPVIFLA-----PE 71 (153)
T ss_pred HHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhcc-----------CCCcEEEEe-----cC
Confidence 4556688999999 888888889888998886421 121111111 011111110 01
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEeCCch
Q 026201 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLS 176 (241)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTA 176 (241)
+ +-.+.+.+.++++++.|+..|+|..+.-
T Consensus 72 g---~t~~~~~~~~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 72 D---RLEEKLESLIKEVKARGAKVIVITDDGD 100 (153)
T ss_pred C---hhHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 1 1112245566789999999999987753
No 243
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=44.60 E-value=33 Score=29.12 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=39.7
Q ss_pred HHHHHHHhCCcEEEEeCCch-hhhHHHHhc----cCCCCeeeccHHHHHHHHHhcCC
Q 026201 157 KRVFLEKAGARCIVMPCHLS-HIWHDEVCK----GCSVPFLHVSECVAKELKEANMK 208 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTA-H~~~d~l~~----~~~vPil~Iid~t~~~i~~~~~k 208 (241)
..+.|...+.|.|++.+-.+ ..+++.+.+ .-+++++-|.+.|++++.+.|.+
T Consensus 160 ~~~~l~~~~~~~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta~~l~~~g~~ 216 (231)
T PF02602_consen 160 LKEALDRGEIDAVVFTSPSAVRAFLELLKKNGALLKRVPIVAIGPRTAKALRELGFK 216 (231)
T ss_dssp HHHHHHHTTTSEEEESSHHHHHHHHHHSSGHHHHHTTSEEEESSHHHHHHHHHTT-S
T ss_pred HHHHHHcCCCCEEEECCHHHHHHHHHHhHhhhhhhhCCEEEEECHHHHHHHHHcCCC
Confidence 34567778999999998644 445566663 45799999999999999998875
No 244
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=44.58 E-value=1.4e+02 Score=28.17 Aligned_cols=112 Identities=12% Similarity=0.010 Sum_probs=66.1
Q ss_pred CCeEEEEeCCChH-HHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVD-STLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIGGmGp~-AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
-+.|.|+||-+|. ...+++..+++...+. .+.+-+ + ..+ . -.+.+
T Consensus 120 v~~i~lvgGe~p~~~~~e~l~eii~~Ik~~-~p~i~I-e------------i~~------------l--------t~e~~ 165 (366)
T TIGR02351 120 FKEILLVTGESEKAAGVEYIAEAIKLAREY-FSSLAI-E------------VQP------------L--------NEEEY 165 (366)
T ss_pred CCEEEEeeCCCCCCCCHHHHHHHHHHHHHh-CCcccc-c------------ccc------------C--------CHHHH
Confidence 5789999999887 5588888888877654 110101 0 001 0 12334
Q ss_pred HHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhh
Q 026201 159 VFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAG 230 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~ 230 (241)
+.|.++|++-+-+=-.|.+. .|+.+.....---..-.-.+.+.+++.|++ .-.-.+++|...+....
T Consensus 166 ~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~-----~v~~g~i~Gl~e~~~d~ 233 (366)
T TIGR02351 166 KKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR-----KIGIGALLGLDDWRTDA 233 (366)
T ss_pred HHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC-----eeceeEEEeCchhHHHH
Confidence 67999999999998888865 456665321111111123466777777764 11245677776654433
No 245
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=44.56 E-value=1.8e+02 Score=26.40 Aligned_cols=91 Identities=11% Similarity=0.184 Sum_probs=55.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHH
Q 026201 81 NTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF 160 (241)
Q Consensus 81 k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~ 160 (241)
-+||+| -||...|......|.+.-..++.+.+-++. .+ ..-+++.+..... +.
T Consensus 3 vkig~i-k~GniGts~v~dlllDErAdRedi~vrVvg----------sg-------------aKM~Pe~veaav~---~~ 55 (277)
T COG1927 3 VKIGFI-KCGNIGTSPVVDLLLDERADREDIEVRVVG----------SG-------------AKMDPECVEAAVT---EM 55 (277)
T ss_pred eEEEEE-EecccchHHHHHHHHHhhcccCCceEEEec----------cc-------------cccChHHHHHHHH---HH
Confidence 478988 677777778888887776655555555433 11 1112222222222 56
Q ss_pred HHHhCCcEEEEeCCchhh----hHHHHhccCCCCeeeccHHH
Q 026201 161 LEKAGARCIVMPCHLSHI----WHDEVCKGCSVPFLHVSECV 198 (241)
Q Consensus 161 Le~~Gad~IvIaCNTAH~----~~d~l~~~~~vPil~Iid~t 198 (241)
|+...+|||++-..-+-+ ..+++-+..++|.+-|.|+-
T Consensus 56 ~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 56 LEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred HHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc
Confidence 788889988775543332 35677777788888777753
No 246
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=44.53 E-value=49 Score=30.39 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=52.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEec-CccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHH
Q 026201 82 TVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCS-DPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVF 160 (241)
Q Consensus 82 ~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S-~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~ 160 (241)
+|||+ =+|..+|..+.+.+.+.-..++.+.+-+++ .+. -+++.+.+.. -+.
T Consensus 3 KiGii-KlGNig~s~~idl~LDErAdRedI~vrv~gsGaK------------------------m~pe~~e~~~---~~~ 54 (276)
T PF01993_consen 3 KIGII-KLGNIGTSVVIDLLLDERADREDIDVRVVGSGAK------------------------MGPEDVEEVV---TKM 54 (276)
T ss_dssp EEEEE-EES--HHHHHTTGGGSTTS--SSEEEEEEEEET--------------------------SHHHHHHHH---HHH
T ss_pred EEEEE-EecccchHHHHHHHHHhhhccCCceEEEeccCCC------------------------CCHHHHHHHH---HHH
Confidence 68888 778888887777776655544455554444 221 1222222222 245
Q ss_pred HHHhCCcEEEEeCCchhhh----HHHHhccCCCCeeeccHHH----HHHHHHhc
Q 026201 161 LEKAGARCIVMPCHLSHIW----HDEVCKGCSVPFLHVSECV----AKELKEAN 206 (241)
Q Consensus 161 Le~~Gad~IvIaCNTAH~~----~d~l~~~~~vPil~Iid~t----~~~i~~~~ 206 (241)
|+..+.||+++-+.-+-.. ++++-...++|.|=|-|.- .+++.+.|
T Consensus 55 ~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g 108 (276)
T PF01993_consen 55 LKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEG 108 (276)
T ss_dssp HHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT
T ss_pred HHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcC
Confidence 7788999888877655543 4666666788988877754 34455554
No 247
>PRK06683 hypothetical protein; Provisional
Probab=44.16 E-value=96 Score=23.19 Aligned_cols=48 Identities=8% Similarity=0.111 Sum_probs=36.5
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHH---hccCCCCeeeccHHHHHHHHHhc
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEV---CKGCSVPFLHVSECVAKELKEAN 206 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l---~~~~~vPil~Iid~t~~~i~~~~ 206 (241)
..+.+++..+.+++||-|......+.+ .+..+||++..- +-+++-..-
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~--t~~eLG~A~ 69 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE--SVRKLGKVA 69 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC--CHHHHHHHh
Confidence 345677888999999999999886665 456789998864 666776653
No 248
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=44.00 E-value=40 Score=28.71 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=34.8
Q ss_pred eeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHh-hhhHHHHHHhcCC
Q 026201 192 LHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT-AGFYQEKLQHEDC 241 (241)
Q Consensus 192 l~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~-s~~Y~~~L~~~G~ 241 (241)
..=++++++++++.|.| ||||----|..+ ++.+.+.|+++||
T Consensus 40 ~tRveEiieFak~mgyk--------kiGiAfCiGL~~EA~~~~~iL~~~gF 82 (157)
T PF08901_consen 40 LTRVEEIIEFAKRMGYK--------KIGIAFCIGLRKEARILAKILEANGF 82 (157)
T ss_pred cchHHHHHHHHHHcCCC--------eeeehhhHhHHHHHHHHHHHHHHCCC
Confidence 34478999999999988 999987777764 6788888988886
No 249
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=43.90 E-value=86 Score=28.52 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=55.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHH
Q 026201 82 TVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFL 161 (241)
Q Consensus 82 ~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~L 161 (241)
+||++=+.-+.+.++|+.+|.+...- .++-+.. |. ..++.++-.+.+.+..+.|
T Consensus 79 tiG~~f~~d~~~~adYl~~l~~aA~P---~~L~iEg--------------P~---------d~g~r~~QI~~l~~Lr~~L 132 (248)
T PF07476_consen 79 TIGLAFDNDPDRMADYLAELEEAAAP---FKLRIEG--------------PM---------DAGSREAQIEALAELREEL 132 (248)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHHHTT---S-EEEE---------------SB-----------SSHHHHHHHHHHHHHHH
T ss_pred hHHHHhCCCHHHHHHHHHHHHHhcCC---CeeeeeC--------------Cc---------CCCChHHHHHHHHHHHHHH
Confidence 56665577888889999888776542 2333322 22 1234556667788888999
Q ss_pred HHhCCcEEEEe---CCchhhhHHHHhcc------CCCCeeeccHHHHHHH
Q 026201 162 EKAGARCIVMP---CHLSHIWHDEVCKG------CSVPFLHVSECVAKEL 202 (241)
Q Consensus 162 e~~Gad~IvIa---CNTAH~~~d~l~~~------~~vPil~Iid~t~~~i 202 (241)
.+.|+++=++| |||.--.-+...+. .+.|=++=+..+++++
T Consensus 133 ~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAv 182 (248)
T PF07476_consen 133 DRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAV 182 (248)
T ss_dssp HHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHH
T ss_pred HhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHH
Confidence 99999999998 99987543333322 2456555555555554
No 250
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=43.84 E-value=1.5e+02 Score=27.19 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhh---hHHHHhcc--CCCC---eeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKG--CSVP---FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNA 225 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~---~~d~l~~~--~~vP---il~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~ 225 (241)
..+.+++|.++|..++.+.=|+.-. +..+|+.. .+++ |+.=.++|+..+++.. ..+||-++|+++
T Consensus 29 a~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~-------~~~kv~viG~~~ 101 (269)
T COG0647 29 AAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQK-------PGKKVYVIGEEG 101 (269)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhC-------CCCEEEEECCcc
Confidence 3456678999999999998665443 33666662 3343 5665678888888853 124999999877
Q ss_pred HHhhhhHHHHHHhcCC
Q 026201 226 ILTAGFYQEKLQHEDC 241 (241)
Q Consensus 226 T~~s~~Y~~~L~~~G~ 241 (241)
- ++.|+..|+
T Consensus 102 l------~~~l~~~G~ 111 (269)
T COG0647 102 L------KEELEGAGF 111 (269)
T ss_pred h------HHHHHhCCc
Confidence 4 445555553
No 251
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=43.38 E-value=55 Score=29.12 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 141 GGVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 141 ~~~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
++...||+.+.+.+ ++|.+.|++.|++...|--.+
T Consensus 11 ~dg~iD~~~~~~~i----~~l~~~Gv~gi~~~GstGE~~ 45 (281)
T cd00408 11 ADGEVDLDALRRLV----EFLIEAGVDGLVVLGTTGEAP 45 (281)
T ss_pred CCCCcCHHHHHHHH----HHHHHcCCCEEEECCCCcccc
Confidence 34567888776655 689999999999999887554
No 252
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=43.33 E-value=1.1e+02 Score=28.58 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=55.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (241)
.++|-|+ ++-+. =-+...|.++-..+ -.+..||-|++++-+-...++..+.-++. .++++.+..+ +.
T Consensus 90 ~~ri~i~--VSK~~-HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~-----~~~~k~e~E~---~~ 158 (287)
T COG0788 90 RKRIAIL--VSKED-HCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPV-----TKENKAEAEA---RL 158 (287)
T ss_pred CceEEEE--EechH-HHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccC-----CCCcchHHHH---HH
Confidence 3455555 22222 13455555555544 55667776777654333233332222211 1222333333 23
Q ss_pred HHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201 158 RVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii 195 (241)
.+.+++.|+|++|+| --+...-+++.+++.=++|||=
T Consensus 159 ~~ll~~~~~DlvVLA-RYMqILS~d~~~~~~g~iINIH 195 (287)
T COG0788 159 LELLEEYGADLVVLA-RYMQILSPDFVERFPGKIINIH 195 (287)
T ss_pred HHHHHHhCCCEEeeh-hhHhhCCHHHHHhccCcEEEec
Confidence 467889999999998 2333344677777777788873
No 253
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.29 E-value=2.7e+02 Score=26.61 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=37.9
Q ss_pred hCCcEEEEeC-C-chh----hhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHH-hhhhHHHHH
Q 026201 164 AGARCIVMPC-H-LSH----IWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAIL-TAGFYQEKL 236 (241)
Q Consensus 164 ~Gad~IvIaC-N-TAH----~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~-~s~~Y~~~L 236 (241)
.++|+||..- - ..| ......+ ..++|+++=++...+.++.... +.+.|||-||.|-- .+.+-...|
T Consensus 64 ~~~d~vv~sp~i~~~~~~~~~~v~~a~-~~gi~i~~~~~~~~~~~~~~~~------~~~vI~VTGT~GKTTTt~ll~~iL 136 (460)
T PRK01390 64 SGFAALVLSPGVPLTHPKPHWVVDLAR-AAGVEVIGDIELFCRERRAHAP------DAPFIAITGTNGKSTTTALIAHIL 136 (460)
T ss_pred cCCCEEEECCCCCccCCcccHHHHHHH-HcCCcEEeHHHHHHHHhhccCC------CCCEEEEeCCCcHHHHHHHHHHHH
Confidence 3688877522 1 112 2344433 3579999977665544332111 12389999998732 334445555
Q ss_pred HhcC
Q 026201 237 QHED 240 (241)
Q Consensus 237 ~~~G 240 (241)
+..|
T Consensus 137 ~~~g 140 (460)
T PRK01390 137 REAG 140 (460)
T ss_pred HhcC
Confidence 5544
No 254
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=43.21 E-value=1.6e+02 Score=25.98 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=52.0
Q ss_pred cchhhccCCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchH-Hhhh-cCCChhhhhcccCCCCCCCHHH
Q 026201 73 SDALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNK-ELLS-HDRSSFSSLNCKGGGVQLDDSL 149 (241)
Q Consensus 73 ~~~~~~~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d-~ll~-~~~~~~~~~~~~~~~~~~d~~~ 149 (241)
...++.+.++|-|+| |.+...+.+|..++...- .+....+++.... .+.. .+.|-.-.. ...+...+
T Consensus 121 ~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g-----~~~~~~~d~~~~~~~~~~~~~~Dv~I~i-----S~sg~~~~ 190 (278)
T PRK11557 121 CVTMLRSARRIILTGIGASGLVAQNFAWKLMKIG-----INAVAERDMHALLATVQALSPDDLLLAI-----SYSGERRE 190 (278)
T ss_pred HHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCC-----CeEEEcCChHHHHHHHHhCCCCCEEEEE-----cCCCCCHH
Confidence 556677889999998 666666666666665321 1223334433221 1111 112211111 12223333
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCchhhhHH
Q 026201 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIWHD 181 (241)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d 181 (241)
+ .+.++.+.+.||..|+|..|..+....
T Consensus 191 ~----~~~~~~ak~~ga~iI~IT~~~~s~la~ 218 (278)
T PRK11557 191 L----NLAADEALRVGAKVLAITGFTPNALQQ 218 (278)
T ss_pred H----HHHHHHHHHcCCCEEEEcCCCCCchHH
Confidence 3 345567889999999999987666543
No 255
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=43.17 E-value=2.4e+02 Score=25.11 Aligned_cols=23 Identities=4% Similarity=0.169 Sum_probs=13.5
Q ss_pred CEEEEEecHHH-Hh---hhhHHHHHHh
Q 026201 216 LRIGVLAKNAI-LT---AGFYQEKLQH 238 (241)
Q Consensus 216 ~rVGLLaT~~T-~~---s~~Y~~~L~~ 238 (241)
++|+++..+.. .- .+.+++.+++
T Consensus 135 ~~v~~i~~~~~~~g~~~~~~~~~~~~~ 161 (332)
T cd06344 135 KKVAIFYNSTSPYSQSLKQEFTSALLE 161 (332)
T ss_pred CeEEEEeCCCchHhHHHHHHHHHHHHH
Confidence 48999976533 22 2345666665
No 256
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=43.01 E-value=2.4e+02 Score=25.10 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=39.6
Q ss_pred HHHHHH-hCCcEEEEeCCchhh--hHHHHhccCCCCeeecc----------------------HHHHHHHHHhcCCCCCC
Q 026201 158 RVFLEK-AGARCIVMPCHLSHI--WHDEVCKGCSVPFLHVS----------------------ECVAKELKEANMKPLEA 212 (241)
Q Consensus 158 ~~~Le~-~Gad~IvIaCNTAH~--~~d~l~~~~~vPil~Ii----------------------d~t~~~i~~~~~k~~~~ 212 (241)
++.|.+ .++.+|+=+-++... +.+.+. .++|+|+.. ...+..+.+.
T Consensus 59 a~~Li~~~~v~aviG~~~s~~a~a~~~~~~--~~vp~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~------- 129 (333)
T cd06358 59 AARLVDEGGVDAIIGWHTSAVRNAVAPVVA--GRVPYVYTSLYEGGECNPGVFLTGETPEQQLAPAIPWLAEE------- 129 (333)
T ss_pred HHHHHHhCCCcEEEecCcHHHHHHHHHHHh--cCceEEeCCCcCCCCCCCCEEEcCCCcHHHHHHHHHHHHHh-------
Confidence 344554 489988866444332 233333 677777642 0122223222
Q ss_pred CCCCEEEEEecHHHH---hhhhHHHHHHhcCC
Q 026201 213 GSPLRIGVLAKNAIL---TAGFYQEKLQHEDC 241 (241)
Q Consensus 213 ~~~~rVGLLaT~~T~---~s~~Y~~~L~~~G~ 241 (241)
...++|++++-+.-. -...+++.+++.|+
T Consensus 130 ~g~~~v~i~~~~~~~g~~~~~~~~~~~~~~G~ 161 (333)
T cd06358 130 KGARRWYLIGNDYVWPRGSLAAAKRYIAELGG 161 (333)
T ss_pred cCCCeEEEEeccchhhHHHHHHHHHHHHHcCC
Confidence 123489999755322 23456777777664
No 257
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=43.00 E-value=1.5e+02 Score=27.23 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=51.2
Q ss_pred CCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201 80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (241)
Q Consensus 80 ~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (241)
.++|+|+| |-| .-++.|.+..... ..+.+|+.++|.........+. |.-... ....+.+.- =.
T Consensus 89 ~~ri~vl~Sg~g-----~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gI-p~~~~~----~~~~~~~~~---~~ 155 (286)
T PRK13011 89 RPKVLIMVSKFD-----HCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGI-PFHHFP----ITPDTKPQQ---EA 155 (286)
T ss_pred CceEEEEEcCCc-----ccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCC-CEEEeC----CCcCchhhh---HH
Confidence 45899996 422 3345555555543 5677777777766432111111 111100 001111111 11
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
+..+.|++.++|+||++ .-....-+.+-+.+.-.++||
T Consensus 156 ~~~~~l~~~~~Dlivla-gy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK13011 156 QVLDVVEESGAELVVLA-RYMQVLSPELCRKLAGRAINI 193 (286)
T ss_pred HHHHHHHHhCcCEEEEe-ChhhhCCHHHHhhccCCeEEe
Confidence 23467889999999998 222333355555555556666
No 258
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=42.85 E-value=2.6e+02 Score=25.34 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCcEEEEeCCchhh--------hHHHHhccCCCCee-------eccHHHHHHHHH
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL-------HVSECVAKELKE 204 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~~vPil-------~Iid~t~~~i~~ 204 (241)
+.++..++.|||.+++-....+. ++++|.+.+++|++ ++-..+++.+.+
T Consensus 90 ~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 34567788888887775543321 35667777777765 444455555554
No 259
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=42.66 E-value=63 Score=30.77 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=29.0
Q ss_pred CCcEEEEeCCchhhh-------HHHHhccCCCCeeeccHHHHHHHH
Q 026201 165 GARCIVMPCHLSHIW-------HDEVCKGCSVPFLHVSECVAKELK 203 (241)
Q Consensus 165 Gad~IvIaCNTAH~~-------~d~l~~~~~vPil~Iid~t~~~i~ 203 (241)
++++|.|+-||-|.= ..++...+++|..+-+.-....+.
T Consensus 287 ~a~Vvgi~lNtr~~dE~~are~~a~l~~efglP~~Dp~~~~~d~~~ 332 (339)
T COG3367 287 NAKVVGIALNTRNLDEEEARELCAKLEAEFGLPVTDPLRFGEDVLL 332 (339)
T ss_pred CCcEEEEEecccccChHHHHHHHHHHhhccCCccccccccchHHHH
Confidence 499999999999863 244666788999888775554443
No 260
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=42.65 E-value=2.4e+02 Score=25.22 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=12.7
Q ss_pred hccCCeEEEEeCCChHHHHH
Q 026201 77 LNQANTVGIVGGASVDSTLN 96 (241)
Q Consensus 77 ~~~~k~IGIIGGmGp~AT~~ 96 (241)
|+.+++|||| |.|.....-
T Consensus 1 ~~~~~~V~vI-G~G~mG~~i 19 (295)
T PLN02545 1 MAEIKKVGVV-GAGQMGSGI 19 (295)
T ss_pred CCCcCEEEEE-CCCHHHHHH
Confidence 4557899999 556555443
No 261
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=42.57 E-value=53 Score=26.77 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCcEEEEeCCchhh----------hHHHHhcc--CCCCee
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHI----------WHDEVCKG--CSVPFL 192 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~----------~~d~l~~~--~~vPil 192 (241)
+.++..++.|||.+.+.++..+. ++.++.+. .++|++
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~ 117 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLK 117 (201)
T ss_pred HHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEE
Confidence 44567788999999998886532 23456666 377765
No 262
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=42.40 E-value=1.6e+02 Score=26.49 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=51.1
Q ss_pred CcchhhccCCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchH-HhhhcC-CChhhhhcccCCCCCCCHH
Q 026201 72 CSDALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNK-ELLSHD-RSSFSSLNCKGGGVQLDDS 148 (241)
Q Consensus 72 ~~~~~~~~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d-~ll~~~-~~~~~~~~~~~~~~~~d~~ 148 (241)
.....|.+.++|-++| |.+...+.++..++...- .+.+.++|+.... .+.... .|..-.. ...+...
T Consensus 122 ~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig-----~~~~~~~d~~~~~~~~~~~~~~Dv~i~i-----S~sG~t~ 191 (281)
T COG1737 122 RAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIG-----LNVVALSDTHGQLMQLALLTPGDVVIAI-----SFSGYTR 191 (281)
T ss_pred HHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcC-----CceeEecchHHHHHHHHhCCCCCEEEEE-----eCCCCcH
Confidence 3566676789898888 555555555555554432 3344455555432 111111 1211111 1122333
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
+++ +.++...+.||..|+|..+...+.
T Consensus 192 e~i----~~a~~ak~~ga~vIaiT~~~~spl 218 (281)
T COG1737 192 EIV----EAAELAKERGAKVIAITDSADSPL 218 (281)
T ss_pred HHH----HHHHHHHHCCCcEEEEcCCCCCch
Confidence 443 455678899999999998865554
No 263
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=42.36 E-value=80 Score=26.02 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=31.6
Q ss_pred HHHHHHHhCCc-EEEEeCCchhhhHHHHhccCCCCeeeccHHHHH
Q 026201 157 KRVFLEKAGAR-CIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAK 200 (241)
Q Consensus 157 ~~~~Le~~Gad-~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~ 200 (241)
.++.|++.|++ ++-+|+.....+++.+++.-++.++....+...
T Consensus 7 l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A 51 (172)
T PF02776_consen 7 LAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGA 51 (172)
T ss_dssp HHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHH
T ss_pred HHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchh
Confidence 34789999996 778999998889999998877888877665433
No 264
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=41.88 E-value=1.1e+02 Score=27.99 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCcEEEEeCCchhh--------hHHHHhccCCCCee-------eccHHHHHHHH
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL-------HVSECVAKELK 203 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~~vPil-------~Iid~t~~~i~ 203 (241)
+.+++.++.|||.+++.-..... +|..|.+.+++||+ .+-..+...+.
T Consensus 92 ~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 92 EYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 34567788899988776554321 35667777778865 33444555555
No 265
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=41.73 E-value=1.7e+02 Score=22.88 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=34.1
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhc---cCCCCeeeccHHHHHHHHHh
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCK---GCSVPFLHVSECVAKELKEA 205 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~---~~~vPil~Iid~t~~~i~~~ 205 (241)
+.+.+..+.++++|.+++--.-+.+.. ..++|++.. .+.+++-..
T Consensus 27 ~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~--~t~~eLg~a 74 (104)
T PRK05583 27 EAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEG--YSKEELGNA 74 (104)
T ss_pred HHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe--cCHHHHHHH
Confidence 456677799999999999988766654 468999887 455666665
No 266
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=41.58 E-value=1.7e+02 Score=25.06 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCCCCCCCCEEEEEecHH----------HHhhhhHHHHHHhcC
Q 026201 197 CVAKELKEANMKPLEAGSPLRIGVLAKNA----------ILTAGFYQEKLQHED 240 (241)
Q Consensus 197 ~t~~~i~~~~~k~~~~~~~~rVGLLaT~~----------T~~s~~Y~~~L~~~G 240 (241)
.+++++.+.|.+ +|++++... ..+..-|++.++++|
T Consensus 102 ~~~~~l~~~g~~--------~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~ 147 (270)
T cd01544 102 KALDYLLELGHT--------RIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKG 147 (270)
T ss_pred HHHHHHHHcCCC--------cEEEECCCcccccccchhhhHHHHHHHHHHHHcC
Confidence 355556666554 999997642 122333777777765
No 267
>TIGR03288 CoB_CoM_SS_B CoB--CoM heterodisulfide reductase, subunit B. Members of this protein family are subunit B of the CoB--CoM heterodisulfide reductase, or simply heterodisulfide reductase, found in methanogenic archaea. Some archaea species have two copies, HdrB1 and HdrB2.
Probab=41.56 E-value=76 Score=28.58 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHH----------Hhc-------------cCCCCeeeccHHHHHH
Q 026201 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDE----------VCK-------------GCSVPFLHVSECVAKE 201 (241)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~----------l~~-------------~~~vPil~Iid~t~~~ 201 (241)
.+++......++.+..+++.|++ ||.+|.|-...+.+ +++ .....++|+.+-+.+.
T Consensus 50 ~d~~~~~~l~~~nl~~~~~~g~~-iv~~C~~C~~~l~~~~~~l~~~~~~~~~v~~~~~~~g~~~~~~~~v~~~~e~L~~~ 128 (290)
T TIGR03288 50 FDLKTWLTLAARNLVIAEEMGKD-ILTVCNGCYGSLFEANHLLKENPELRDKVNEKLAEIGREYKGTINVRHLAEFLYKD 128 (290)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCC-EEEECHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCccCCCcceeeHHHHHHHH
Confidence 36666667777778888999998 88899554443211 111 1136799998877665
Q ss_pred H
Q 026201 202 L 202 (241)
Q Consensus 202 i 202 (241)
+
T Consensus 129 ~ 129 (290)
T TIGR03288 129 I 129 (290)
T ss_pred H
Confidence 4
No 268
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=41.43 E-value=1.3e+02 Score=28.39 Aligned_cols=91 Identities=16% Similarity=0.112 Sum_probs=51.4
Q ss_pred EeCCChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHH
Q 026201 86 VGGASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEK 163 (241)
Q Consensus 86 IGGmGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~ 163 (241)
-|| +.+-=+.|...|++.+++. +.+ |.+- + ++..... ......+.++ ...+.++.|++
T Consensus 201 YGG-slENR~Rf~~Eiv~aVr~~vg~~~--igvR---i---------s~~~~~~--~~~~G~~~~e---~~~~~~~~L~~ 260 (362)
T PRK10605 201 YGG-SVENRARLVLEVVDAGIAEWGADR--IGIR---I---------SPLGTFN--NVDNGPNEEA---DALYLIEQLGK 260 (362)
T ss_pred CCC-cHHHHHHHHHHHHHHHHHHcCCCe--EEEE---E---------CCccccc--cCCCCCCHHH---HHHHHHHHHHH
Confidence 345 6777789999999999876 222 3221 0 1100000 0000112222 13456678999
Q ss_pred hCCcEEEEeCCchh---h----hHHHHhccCCCCeeeccH
Q 026201 164 AGARCIVMPCHLSH---I----WHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 164 ~Gad~IvIaCNTAH---~----~~d~l~~~~~vPil~Iid 196 (241)
.|+|+|=+.+-..+ . +.+++++.+++|++-...
T Consensus 261 ~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~ 300 (362)
T PRK10605 261 RGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA 300 (362)
T ss_pred cCCCEEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC
Confidence 99999988874221 1 347788888888776433
No 269
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=41.28 E-value=1.1e+02 Score=29.81 Aligned_cols=89 Identities=11% Similarity=0.175 Sum_probs=52.3
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
.+++||||-+-...|=-||.+.+.+..+ ..+++++.-+- +...-...|.. ++
T Consensus 128 ~p~~i~vits~~~aa~~D~~~~~~~r~p---~~~~~~~~~~v---------------------QG~~a~~~i~~----al 179 (432)
T TIGR00237 128 FPKRVGVITSQTGAALADILHILKRRDP---SLKVVIYPTLV---------------------QGEGAVQSIVE----SI 179 (432)
T ss_pred CCCEEEEEeCCccHHHHHHHHHHHhhCC---CceEEEecccc---------------------cCccHHHHHHH----HH
Confidence 3789999999999999999988877654 23455543110 11112223333 33
Q ss_pred HHHHHh-CCcEEEEeCCchh---hh-H--HHHh---ccCCCCeeecc
Q 026201 159 VFLEKA-GARCIVMPCHLSH---IW-H--DEVC---KGCSVPFLHVS 195 (241)
Q Consensus 159 ~~Le~~-Gad~IvIaCNTAH---~~-~--d~l~---~~~~vPil~Ii 195 (241)
+.+... .+|+|+|+==--. -| | +.+. ..+++|||+-|
T Consensus 180 ~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~i 226 (432)
T TIGR00237 180 ELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAV 226 (432)
T ss_pred HHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEec
Confidence 444443 3899999844332 23 2 2232 25789999753
No 270
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=41.27 E-value=2e+02 Score=28.45 Aligned_cols=113 Identities=11% Similarity=0.048 Sum_probs=60.4
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCC-EEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFP-FLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~-~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (241)
+..++||+||-|.-=|.-.-. |.+++..| .+-+ ++++- +. + ....++.+++
T Consensus 142 ~GQR~gIfgg~G~GKs~L~~~-ia~~~~~d~~~~~~v~V~~-------~i-G----------------eRgrEv~e~~-- 194 (460)
T PRK04196 142 RGQKLPIFSGSGLPHNELAAQ-IARQAKVLGEEENFAVVFA-------AM-G----------------ITFEEANFFM-- 194 (460)
T ss_pred CCCEEEeeCCCCCCccHHHHH-HHHhhhhccCCCceEEEEE-------Ee-c----------------cccHHHHHHH--
Confidence 356899999888776654443 76666554 1111 22222 00 1 1112333333
Q ss_pred HHHHHHHhC-CcEEEEeCCchh-hhHHHHhccCCCCeeeccHHHHHHHH-HhcCCCCCCCCCCEEEEEecHHHHhhhhHH
Q 026201 157 KRVFLEKAG-ARCIVMPCHLSH-IWHDEVCKGCSVPFLHVSECVAKELK-EANMKPLEAGSPLRIGVLAKNAILTAGFYQ 233 (241)
Q Consensus 157 ~~~~Le~~G-ad~IvIaCNTAH-~~~d~l~~~~~vPil~Iid~t~~~i~-~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~ 233 (241)
+.+...| -+--|+-+||+. +...+.+. |... -..+++.+ +.| +.|.|+..+-|.-...|.
T Consensus 195 --~~~~~~~~l~rtvvV~atsd~p~~~R~~a----~~~a--~tiAEyfr~d~G---------~~VLli~DslTR~A~A~R 257 (460)
T PRK04196 195 --EDFEETGALERSVVFLNLADDPAIERILT----PRMA--LTAAEYLAFEKG---------MHVLVILTDMTNYCEALR 257 (460)
T ss_pred --HHHHhcCCcceEEEEEEcCCCCHHHHHHH----HHHH--HHHHHHHHHhcC---------CcEEEEEcChHHHHHHHH
Confidence 3344445 477777778884 44444332 2222 24566666 343 268888888777666665
Q ss_pred HH
Q 026201 234 EK 235 (241)
Q Consensus 234 ~~ 235 (241)
+.
T Consensus 258 EI 259 (460)
T PRK04196 258 EI 259 (460)
T ss_pred HH
Confidence 53
No 271
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=41.03 E-value=1.2e+02 Score=28.05 Aligned_cols=103 Identities=18% Similarity=0.075 Sum_probs=58.8
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
-+.|.|.||-.|.-..++|..+++...+. ..+.+..++..++.- .. .+. .. ...+.+
T Consensus 87 ~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~-~~---~~~----------g~--------~~~e~l 144 (343)
T TIGR03551 87 ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYY-GA---RNS----------GL--------SVEEAL 144 (343)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHH-HH---HHc----------CC--------CHHHHH
Confidence 56899999987877788888888888765 445554443111100 00 000 00 023445
Q ss_pred HHHHHhCCcEEEEeCCchhhhH-HHHhccCC---CCeeeccHHHHHHHHHhcCC
Q 026201 159 VFLEKAGARCIVMPCHLSHIWH-DEVCKGCS---VPFLHVSECVAKELKEANMK 208 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~-d~l~~~~~---vPil~Iid~t~~~i~~~~~k 208 (241)
+.|.++|++.+. .|..-.+ +++.+... ++.-.- -.+++.+++.|++
T Consensus 145 ~~LkeAGl~~i~---~~~~E~~~~~v~~~i~~~~~~~~~~-~~~i~~a~~~Gi~ 194 (343)
T TIGR03551 145 KRLKEAGLDSMP---GTAAEILDDEVRKVICPDKLSTAEW-IEIIKTAHKLGIP 194 (343)
T ss_pred HHHHHhCccccc---CcchhhcCHHHHHhcCCCCCCHHHH-HHHHHHHHHcCCc
Confidence 689999999774 3443333 66666432 232222 3567777888775
No 272
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=40.98 E-value=1.9e+02 Score=25.35 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=18.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccC---CCCCEEEe
Q 026201 82 TVGIVGGASVDSTLNLLGKLVQLSGEE---NDFPFLLC 116 (241)
Q Consensus 82 ~IGIIGGmGp~AT~~fy~kI~~~t~~d---~~~~~vi~ 116 (241)
|||+|-.. ..-.||..+.+...+. ....+++.
T Consensus 1 ~I~vi~~~---~~~~f~~~i~~gi~~~a~~~g~~v~~~ 35 (298)
T cd06302 1 TIAFVPKV---TGIPYFNRMEEGAKEAAKELGVDAIYV 35 (298)
T ss_pred CEEEEEcC---CCChHHHHHHHHHHHHHHHhCCeEEEE
Confidence 57877642 1235777776666643 45566553
No 273
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=40.88 E-value=1.9e+02 Score=23.27 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCCc
Q 026201 88 GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGAR 167 (241)
Q Consensus 88 GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad 167 (241)
|.|...+.++++++.+..... .+.+|++.- +..|.. .....++..+.+.+.++.+.+.|+.
T Consensus 38 g~~G~~~~~~l~~l~~~~~~~-~~d~v~i~~---------G~ND~~---------~~~~~~~~~~~~~~li~~~~~~~~~ 98 (183)
T cd04501 38 GINGDTTSQMLVRFYEDVIAL-KPAVVIIMG---------GTNDII---------VNTSLEMIKDNIRSMVELAEANGIK 98 (183)
T ss_pred CcCCccHHHHHHHHHHHHHhc-CCCEEEEEe---------ccCccc---------cCCCHHHHHHHHHHHHHHHHHCCCc
Confidence 677777778888776554332 466666551 111211 0113455677788888888899999
Q ss_pred EEEEe
Q 026201 168 CIVMP 172 (241)
Q Consensus 168 ~IvIa 172 (241)
+|++.
T Consensus 99 ~il~~ 103 (183)
T cd04501 99 VILAS 103 (183)
T ss_pred EEEEe
Confidence 88875
No 274
>PRK13191 putative peroxiredoxin; Provisional
Probab=40.85 E-value=1.4e+02 Score=26.02 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCchhh---hHHHHhc--cCCCCeeeccHHHHHHHHHhc
Q 026201 151 VENLRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCK--GCSVPFLHVSECVAKELKEAN 206 (241)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~---~~d~l~~--~~~vPil~Iid~t~~~i~~~~ 206 (241)
...+.+..+.+++.|+++|.+.+.+... |.+.+++ ..++|+--+.|...+..+..|
T Consensus 53 l~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~yg 113 (215)
T PRK13191 53 FYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLG 113 (215)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcC
Confidence 3446677788999999999999998764 5555554 234444444455544444544
No 275
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=40.84 E-value=97 Score=31.16 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH---HHHHHHHhcCCCCCCCCCCEEEEEecHHHHh
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC---VAKELKEANMKPLEAGSPLRIGVLAKNAILT 228 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~---t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~ 228 (241)
+.++..|+|+|+-.-.|+. .|++.+++|+|.|--. +.+.++... .-..||||+|=+.++.
T Consensus 58 ~~~~~~~~dviIsrG~ta~----~i~~~~~iPVv~i~~s~~Dil~al~~a~------~~~~~iavv~~~~~~~ 120 (538)
T PRK15424 58 KRLATERCDAIIAAGSNGA----YLKSRLSVPVILIKPSGFDVMQALARAR------KLTSSIGVVTYQETIP 120 (538)
T ss_pred HHHhhCCCcEEEECchHHH----HHHhhCCCCEEEecCCHhHHHHHHHHHH------hcCCcEEEEecCcccH
Confidence 5677889999999988875 4567789999887322 222232221 1134899999766553
No 276
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=40.82 E-value=38 Score=31.37 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHH-------H--HHHHHhcCCCCCCCCCCEEEEEec-
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV-------A--KELKEANMKPLEAGSPLRIGVLAK- 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t-------~--~~i~~~~~k~~~~~~~~rVGLLaT- 223 (241)
+.+.++.|... +|+||+=.. .|...+++.+..++||||..+.. + -.+.+... ..++.+|+++|-
T Consensus 88 l~Dt~~~l~~~-~D~iv~R~~-~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g----~l~gl~i~~vGd~ 161 (304)
T PRK00779 88 IEDTARVLSRY-VDAIMIRTF-EHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYEHRG----SLKGLKVAWVGDG 161 (304)
T ss_pred HHHHHHHHHHh-CCEEEEcCC-ChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHHHHhC----CcCCcEEEEEeCC
Confidence 45556788888 999999865 56678889999999999987531 1 11223211 134569999996
Q ss_pred HHHHhh
Q 026201 224 NAILTA 229 (241)
Q Consensus 224 ~~T~~s 229 (241)
..|..|
T Consensus 162 ~~v~~S 167 (304)
T PRK00779 162 NNVANS 167 (304)
T ss_pred CccHHH
Confidence 234443
No 277
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=40.64 E-value=2e+02 Score=25.32 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=22.3
Q ss_pred HHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec
Q 026201 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I 194 (241)
+.|.+.+|++|+=|-++.... ...+.+..++|+|+.
T Consensus 60 ~~li~~~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~ 96 (334)
T cd06342 60 QKLVDDGVVGVVGHLNSGVTIPASPIYADAGIVMISP 96 (334)
T ss_pred HHHHhCCceEEECCCccHhHHHhHHHHHhCCCeEEec
Confidence 344444999988765554443 344555667888874
No 278
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=40.61 E-value=1.9e+02 Score=23.20 Aligned_cols=73 Identities=18% Similarity=0.014 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHH--
Q 026201 88 GASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEK-- 163 (241)
Q Consensus 88 GmGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~-- 163 (241)
|+|...|..+++.+-+..... ..+.+|+..-- ..|..... .....+.+...+.+.+.++.+.+
T Consensus 39 g~~G~t~~~~~~~~~~~~~~~~~~~pd~vii~~G---------~ND~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~ 105 (199)
T cd01838 39 GFSGYNTRWALKVLPKIFLEEKLAQPDLVTIFFG---------ANDAALPG----QPQHVPLDEYKENLRKIVSHLKSLS 105 (199)
T ss_pred CCCcccHHHHHHHHHHhcCccccCCceEEEEEec---------CccccCCC----CCCcccHHHHHHHHHHHHHHHHhhC
Confidence 777777777777665555433 26778876511 11211100 00012456677778888888877
Q ss_pred hCCcEEEEeC
Q 026201 164 AGARCIVMPC 173 (241)
Q Consensus 164 ~Gad~IvIaC 173 (241)
.|+.+|++..
T Consensus 106 ~~~~ii~~t~ 115 (199)
T cd01838 106 PKTKVILITP 115 (199)
T ss_pred CCCeEEEeCC
Confidence 6888888843
No 279
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=40.58 E-value=2.3e+02 Score=24.16 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=46.1
Q ss_pred HHHHHHHhCCcEEEEeCCch-------hh-hHHHHhccCCCCeeecc---H-HHHHHHHHhcCCCCCCCCCCEEEEEecH
Q 026201 157 KRVFLEKAGARCIVMPCHLS-------HI-WHDEVCKGCSVPFLHVS---E-CVAKELKEANMKPLEAGSPLRIGVLAKN 224 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTA-------H~-~~d~l~~~~~vPil~Ii---d-~t~~~i~~~~~k~~~~~~~~rVGLLaT~ 224 (241)
.++.|++.|+|.+.+.--++ +. +..++.+.+++|+.--. + +-++.+.+.|.+ +| +++|.
T Consensus 34 ~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad--------~v-vigs~ 104 (234)
T cd04732 34 VAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVS--------RV-IIGTA 104 (234)
T ss_pred HHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCC--------EE-EECch
Confidence 44677889999888873222 21 35777788888866422 1 334555566654 55 67887
Q ss_pred HHHhhhhHHHHHHhcC
Q 026201 225 AILTAGFYQEKLQHED 240 (241)
Q Consensus 225 ~T~~s~~Y~~~L~~~G 240 (241)
.--...++++..++.|
T Consensus 105 ~l~dp~~~~~i~~~~g 120 (234)
T cd04732 105 AVKNPELVKELLKEYG 120 (234)
T ss_pred HHhChHHHHHHHHHcC
Confidence 6555566666665543
No 280
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=40.15 E-value=2.8e+02 Score=25.05 Aligned_cols=76 Identities=7% Similarity=-0.091 Sum_probs=40.8
Q ss_pred HHH-HHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec----------------------cHHHHHHHHHhcCCCCCCCC
Q 026201 159 VFL-EKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV----------------------SECVAKELKEANMKPLEAGS 214 (241)
Q Consensus 159 ~~L-e~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I----------------------id~t~~~i~~~~~k~~~~~~ 214 (241)
+.| ++.++++|+=+.++.... .-.+-+..++|++.. +...++.+.+.. .
T Consensus 60 ~~Li~~~~V~~iiG~~~S~~~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~-------g 132 (348)
T cd06355 60 RKLLTQDKVAAVFGCWTSASRKAVLPVFERHNGLLFYPVQYEGLEQSPNVFYTGAAPNQQIIPAVDWLMSNK-------G 132 (348)
T ss_pred HHHHHhCCCcEEEeccchhhHHHHHHHHhccCCceecCCCccCCCCCCCEEEeCCChHHhHHHHHHHHHhcc-------C
Confidence 344 456899888766554432 233334445554421 112334444431 2
Q ss_pred CCEEEEEecHHHHh---hhhHHHHHHhcCC
Q 026201 215 PLRIGVLAKNAILT---AGFYQEKLQHEDC 241 (241)
Q Consensus 215 ~~rVGLLaT~~T~~---s~~Y~~~L~~~G~ 241 (241)
.+||++++.+...- ...+++.+++.|+
T Consensus 133 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~ 162 (348)
T cd06355 133 GKRFYLVGSDYVYPRTANKILKAQLESLGG 162 (348)
T ss_pred CCeEEEECCcchHHHHHHHHHHHHHHHcCC
Confidence 34999998765432 3446677777764
No 281
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=39.93 E-value=1.4e+02 Score=26.70 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhh---------------hHHHHhccCCCCee----ecc-----HHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHI---------------WHDEVCKGCSVPFL----HVS-----ECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~---------------~~d~l~~~~~vPil----~Ii-----d~t~~~i~~~~~k 208 (241)
.+.++.+++.|+|.|-+-|...+. ..+++++.+++|+. ... ...++.+.+.|.+
T Consensus 114 ~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad 191 (289)
T cd02810 114 VELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGAD 191 (289)
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 345567788899999997765442 24667777777754 111 2445666666654
No 282
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=39.82 E-value=2.7e+02 Score=24.72 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=19.9
Q ss_pred HHH-HhCCcEEEEeCCchhhh-HHHHhccCCCCeeec
Q 026201 160 FLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV 194 (241)
Q Consensus 160 ~Le-~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I 194 (241)
.|. +.||++|+=++.+.... .-.+.+..++|+|+.
T Consensus 65 ~li~~~~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~ 101 (345)
T cd06338 65 RLITQDKVDFLLGPYSSGLTLAAAPVAEKYGVPMVAG 101 (345)
T ss_pred HHHhhcCccEEecCCcchhHHHHHHHHHHhCCcEEec
Confidence 344 34888887776554332 234445556777664
No 283
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=39.76 E-value=56 Score=22.71 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCchhh
Q 026201 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHI 178 (241)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~ 178 (241)
...+...+.++.+++.|+|.|+.+|.+=+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~iv~~c~~C~~ 82 (85)
T PF02754_consen 53 LAEKVAKRNLKEIKEAGADTIVTPCPSCYM 82 (85)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEeChhHHH
Confidence 344555666778888999999999987543
No 284
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=39.17 E-value=32 Score=32.78 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH----------------HHHhccC-CCCee
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH----------------DEVCKGC-SVPFL 192 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~----------------d~l~~~~-~vPil 192 (241)
.++.+|.++-|||+++++-=|+|-.| ++|++.+ ++|++
T Consensus 174 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLV 228 (347)
T TIGR01521 174 EEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLV 228 (347)
T ss_pred HHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEE
Confidence 44567888999999999999999765 4566777 57754
No 285
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=39.16 E-value=61 Score=30.20 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCcEEEEeCCch-----------------hhhHHHHhccC-CCCeeeccHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLS-----------------HIWHDEVCKGC-SVPFLHVSEC 197 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTA-----------------H~~~d~l~~~~-~vPil~Iid~ 197 (241)
+.+.++.|+++|+|.|.+-+-|. ..++.++++.+ ++||+...+.
T Consensus 153 ~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI 214 (333)
T PRK11815 153 LCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGI 214 (333)
T ss_pred HHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCc
Confidence 44566789999999999987663 11346777775 8999987654
No 286
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=38.61 E-value=1.8e+02 Score=25.07 Aligned_cols=36 Identities=19% Similarity=-0.098 Sum_probs=20.7
Q ss_pred HHHHHHhCCcEEEEeCCchhhhH-HHHhccCCCCeee
Q 026201 158 RVFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLH 193 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH~~~-d~l~~~~~vPil~ 193 (241)
++.|.+.++|.|++.+...+... +.+++..++|++-
T Consensus 50 i~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~PiV~ 86 (265)
T cd06354 50 LEQLADAGYDLIVGVGFLLADALKEVAKQYPDQKFAI 86 (265)
T ss_pred HHHHHhCCCCEEEEcCcchHHHHHHHHHHCCCCEEEE
Confidence 45678899999998755433333 3333322455543
No 287
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=38.27 E-value=39 Score=31.13 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCcEEEEeCCchhh---------hHHHHhccCCCCeeeccHHH
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHI---------WHDEVCKGCSVPFLHVSECV 198 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~---------~~d~l~~~~~vPil~Iid~t 198 (241)
+.++.|+++|+++|.|-|-|..- ++.++++.+++||+.=.|..
T Consensus 142 ~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~ 193 (309)
T PF01207_consen 142 EFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIF 193 (309)
T ss_dssp HHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--
T ss_pred HHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccC
Confidence 45568999999999999966532 35778888999988655543
No 288
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.22 E-value=65 Score=32.50 Aligned_cols=67 Identities=10% Similarity=0.176 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhh-HHHHhc------------------cCCCCeeeccHHHHHHHHHhcCCCCCCCC
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIW-HDEVCK------------------GCSVPFLHVSECVAKELKEANMKPLEAGS 214 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~------------------~~~vPil~Iid~t~~~i~~~~~k~~~~~~ 214 (241)
|.+++-||.+.+..+++.||+|.-+= .++|+- .++--.-.|+.+++++++..|.+
T Consensus 395 LAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfD------ 468 (587)
T KOG0781|consen 395 LAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFD------ 468 (587)
T ss_pred HHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCC------
Confidence 56677899999999999999999873 244432 22222335667788888887764
Q ss_pred CCEEEEEecHHHHhh
Q 026201 215 PLRIGVLAKNAILTA 229 (241)
Q Consensus 215 ~~rVGLLaT~~T~~s 229 (241)
|-|+-|.|-|+.
T Consensus 469 ---VvLiDTAGR~~~ 480 (587)
T KOG0781|consen 469 ---VVLIDTAGRMHN 480 (587)
T ss_pred ---EEEEeccccccC
Confidence 777888776654
No 289
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=38.08 E-value=1.9e+02 Score=25.66 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCCCCCCCCCEEEEEecHH-----HHhhhhHHHHHHhcC
Q 026201 197 CVAKELKEANMKPLEAGSPLRIGVLAKNA-----ILTAGFYQEKLQHED 240 (241)
Q Consensus 197 ~t~~~i~~~~~k~~~~~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~G 240 (241)
.+++++.+.|.+ +|++++... ..+..-|.+.++.+|
T Consensus 164 ~a~~~l~~~G~~--------~i~~i~~~~~~~~~~~R~~gf~~~~~~~g 204 (327)
T PRK10339 164 EIIDFYINQGVN--------RIGFIGGEDEPGKADIREVAFAEYGRLKQ 204 (327)
T ss_pred HHHHHHHHCCCC--------eEEEeCCccccchhhHHHHHHHHHHHHcC
Confidence 455666666655 999996532 122334666666555
No 290
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=37.90 E-value=68 Score=31.78 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCcEEEEeC---Cchhhh--HHHHhccC-CCCeee--ccH-HHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPC---HLSHIW--HDEVCKGC-SVPFLH--VSE-CVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaC---NTAH~~--~d~l~~~~-~vPil~--Iid-~t~~~i~~~~~k 208 (241)
.+.++.|.++|+|+|++-+ ++...+ .++|++.+ ++||+- +.. ..++.+.++|.+
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad 305 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGAD 305 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCC
Confidence 3455678999999999998 555543 47788775 577643 544 466777788765
No 291
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=37.83 E-value=59 Score=30.99 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWH 180 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~ 180 (241)
-.++.+|.++-|||+++++-=|+|-.|
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGT~HG~Y 201 (347)
T PRK09196 175 PEEAADFVKKTQVDALAIAIGTSHGAY 201 (347)
T ss_pred HHHHHHHHHHhCcCeEhhhhccccCCC
Confidence 345667888999999999999999654
No 292
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=37.61 E-value=1.7e+02 Score=25.21 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=25.7
Q ss_pred HHHHHHhCCcEEEEeCCchh-hhHHHHhccCCCCeeec
Q 026201 158 RVFLEKAGARCIVMPCHLSH-IWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCNTAH-~~~d~l~~~~~vPil~I 194 (241)
++...+.|||+|-+. +|.. ..++++.+.+++|++=+
T Consensus 149 ~~~a~~~GaD~Ik~~-~~~~~~~~~~i~~~~~~pvv~~ 185 (235)
T cd00958 149 ARIGAELGADIVKTK-YTGDAESFKEVVEGCPVPVVIA 185 (235)
T ss_pred HHHHHHHCCCEEEec-CCCCHHHHHHHHhcCCCCEEEe
Confidence 445667899999997 4432 34678888888997643
No 293
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=37.45 E-value=47 Score=30.73 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHH--------H--HHHHHhcCCCCCCCCCCEEEEEec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV--------A--KELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t--------~--~~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
+.+.++.|.+. +|+||+=... |....++.+..++||||..+-. + -.+.+... ..+..+|+++|=
T Consensus 85 i~Dta~vls~y-~D~iviR~~~-~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g----~l~g~~va~vGD 158 (301)
T TIGR00670 85 LADTIKTLSGY-SDAIVIRHPL-EGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFG----RLDGLKIALVGD 158 (301)
T ss_pred HHHHHHHHHHh-CCEEEEECCc-hhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC----CCCCCEEEEEcc
Confidence 55566788888 9999998764 7778889999999999997621 1 11333211 124569999995
No 294
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=37.41 E-value=1.8e+02 Score=23.61 Aligned_cols=20 Identities=5% Similarity=-0.101 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCcEEEEeC
Q 026201 154 LRRKRVFLEKAGARCIVMPC 173 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaC 173 (241)
+.+.+++|.+.|++.|++.-
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH
Confidence 34455788899999988876
No 295
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=37.34 E-value=51 Score=31.05 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCc---------hhhhHHHHhccCCCCeeeccH
Q 026201 153 NLRRKRVFLEKAGARCIVMPCHL---------SHIWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvIaCNT---------AH~~~d~l~~~~~vPil~Iid 196 (241)
.+.+.++.|.+. +|+|++=..- .|...+++.+..++||||..+
T Consensus 94 sl~Dtarvls~~-~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~ 145 (335)
T PRK04523 94 HIREVARVLSRY-VDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMET 145 (335)
T ss_pred CHHHHHHHHHHh-CcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCC
Confidence 355566788888 9999999764 367788899999999999865
No 296
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=37.28 E-value=58 Score=26.49 Aligned_cols=51 Identities=10% Similarity=-0.019 Sum_probs=35.5
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh--H-HHHhcc-CCCCeeeccHHHHHHHHHhcCC
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW--H-DEVCKG-CSVPFLHVSECVAKELKEANMK 208 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~--~-d~l~~~-~~vPil~Iid~t~~~i~~~~~k 208 (241)
.++.|+++|++.|++-|...|-+ + .++... -.+. -+++.+.++++++.|++
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Gir 59 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIR 59 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCE
Confidence 34688999999999977766643 4 334222 2344 57778888888888874
No 297
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=37.17 E-value=2e+02 Score=27.16 Aligned_cols=109 Identities=8% Similarity=-0.046 Sum_probs=66.2
Q ss_pred CCeEEEEeCCChH-HHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVD-STLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIGGmGp~-AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
-+.|.|+||-.|. ...+++..+++...+. .+.+-+.. .+ .+ .+..
T Consensus 121 v~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~-~p~i~i~~-------------g~------------lt--------~e~l 166 (371)
T PRK09240 121 FEHILLLTGEHEAKVGVDYIRRALPIAREY-FSSVSIEV-------------QP------------LS--------EEEY 166 (371)
T ss_pred CCEEEEeeCCCCCCCCHHHHHHHHHHHHHh-CCCceecc-------------CC------------CC--------HHHH
Confidence 5789999999887 5788888888877654 11111111 01 01 1233
Q ss_pred HHHHHhCCcEEEEeCCchhh-hHHHHhcc-CCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHh
Q 026201 159 VFLEKAGARCIVMPCHLSHI-WHDEVCKG-CSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILT 228 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~-~~d~l~~~-~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~ 228 (241)
+.|+++|++-+-+=-.|.+. .+..+... ..--+=. .-.+.+.+++.|++ .-.-.+++|...+.+
T Consensus 167 ~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~-rl~~i~~a~~aG~~-----~v~~g~i~Glge~~~ 232 (371)
T PRK09240 167 AELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEY-RLETPERAGRAGIR-----KIGLGALLGLSDWRT 232 (371)
T ss_pred HHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHH-HHHHHHHHHHcCCC-----eeceEEEecCCccHH
Confidence 67999999999999999754 56777531 1111112 22356667777763 123567778776653
No 298
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=37.15 E-value=50 Score=31.06 Aligned_cols=72 Identities=14% Similarity=0.049 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH-------HH--HHHHHh-cCCCCCCCCCCEEEEEec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VA--KELKEA-NMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~-------t~--~~i~~~-~~k~~~~~~~~rVGLLaT 223 (241)
+.+.++.|.+. +|+||+=+. .|....++.+..++||||..+. .+ -.+.+. .. ..++.+|+++|-
T Consensus 90 l~DTarvls~y-~D~iviR~~-~~~~~~~~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~e~~~g----~l~g~kia~vGD 163 (332)
T PRK04284 90 TKDTARVLGGM-YDGIEYRGF-SQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEHLKK----PYKDIKFTYVGD 163 (332)
T ss_pred HHHHHHHHHHh-CCEEEEecC-chHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhcC----CcCCcEEEEecC
Confidence 45556788888 999999976 4666788888899999997542 11 113333 11 124569999995
Q ss_pred --HHHHhhhh
Q 026201 224 --NAILTAGF 231 (241)
Q Consensus 224 --~~T~~s~~ 231 (241)
..|..|-+
T Consensus 164 ~~~~v~~Sl~ 173 (332)
T PRK04284 164 GRNNVANALM 173 (332)
T ss_pred CCcchHHHHH
Confidence 24555443
No 299
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=37.14 E-value=83 Score=26.12 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhC-CcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 145 LDDSLIVENLRRKRVFLEKAG-ARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~G-ad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
-+|++|.+.+.+.++.+.+.| .|.|+-.-+-.=.++..|...+++|++..
T Consensus 10 is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~ 60 (156)
T PRK09177 10 VSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDT 60 (156)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeE
Confidence 478889998988888887766 78888888888888888888889886643
No 300
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.07 E-value=1e+02 Score=28.04 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCcEEEEeCCchh-----------------hhHHHHhccCCCCeeeccH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSH-----------------IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH-----------------~~~d~l~~~~~vPil~Iid 196 (241)
.+.++.|++.|+|+|.+...+.. .+...+++.+++||+....
T Consensus 231 ~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Gg 289 (327)
T cd02803 231 IEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGG 289 (327)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCC
Confidence 44567899999999987554321 1346688888999887544
No 301
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=37.02 E-value=2.8e+02 Score=24.06 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCCCCCCCCEEEEEecHH-----HHhhhhHHHHHHhcC
Q 026201 197 CVAKELKEANMKPLEAGSPLRIGVLAKNA-----ILTAGFYQEKLQHED 240 (241)
Q Consensus 197 ~t~~~i~~~~~k~~~~~~~~rVGLLaT~~-----T~~s~~Y~~~L~~~G 240 (241)
.+++++.+.|.+ +|++|+... ..+..-|++.++++|
T Consensus 142 ~a~~~l~~~G~~--------~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~ 182 (309)
T PRK11041 142 EAVNYLHELGHK--------RIACIAGPEEMPLCHYRLQGYVQALRRCG 182 (309)
T ss_pred HHHHHHHHcCCc--------eEEEEeCCccccchHHHHHHHHHHHHHcC
Confidence 445566665544 999996432 223344677777665
No 302
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=37.01 E-value=78 Score=26.85 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=36.5
Q ss_pred HHHhCCcEEEEeC-CchhhhHHHHhcc------CCCCeeeccHHHHHHHHHhcCC
Q 026201 161 LEKAGARCIVMPC-HLSHIWHDEVCKG------CSVPFLHVSECVAKELKEANMK 208 (241)
Q Consensus 161 Le~~Gad~IvIaC-NTAH~~~d~l~~~------~~vPil~Iid~t~~~i~~~~~k 208 (241)
+.+.+.|.|++.+ +++..|++.+... .+++++-|.+.|++.+++.|.+
T Consensus 173 ~~~~~~d~ivftS~~~v~~~~~~~~~~~~~~~~~~~~~~aiG~~Ta~~l~~~G~~ 227 (249)
T PRK05928 173 LQSGEVDAVIFTSPSTVRAFFSLAPELGRREWLLSCKAVVIGERTAEALRELGIK 227 (249)
T ss_pred HHhCCCCEEEECCHHHHHHHHHHhcccchhHHHhCCeEEEeCHHHHHHHHHcCCC
Confidence 3356899999986 5555667776543 2688999999999999998764
No 303
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=36.97 E-value=2.3e+02 Score=23.21 Aligned_cols=92 Identities=10% Similarity=0.043 Sum_probs=48.3
Q ss_pred cchhhccCCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHH
Q 026201 73 SDALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIV 151 (241)
Q Consensus 73 ~~~~~~~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~ 151 (241)
....|.+.++|=|+| |.+...+.+|..++...-.. .....+.... .+ .+.|-.-.. ...+.-.+
T Consensus 23 ~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~-----~~~~~~~~~~--~~-~~~Dv~I~i-----S~sG~t~~-- 87 (179)
T TIGR03127 23 LADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFN-----VYVVGETTTP--SI-KKGDLLIAI-----SGSGETES-- 87 (179)
T ss_pred HHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCe-----EEEeCCcccC--CC-CCCCEEEEE-----eCCCCcHH--
Confidence 455667788999998 76666667777777543221 1111111000 00 001110000 01111222
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCchhhhHH
Q 026201 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWHD 181 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d 181 (241)
+.+.++.+++.|+..|+|..|......+
T Consensus 88 --~i~~~~~ak~~g~~ii~IT~~~~s~la~ 115 (179)
T TIGR03127 88 --LVTVAKKAKEIGATVAAITTNPESTLGK 115 (179)
T ss_pred --HHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 3345567889999999999887766543
No 304
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=36.90 E-value=2.9e+02 Score=27.30 Aligned_cols=113 Identities=11% Similarity=0.090 Sum_probs=62.2
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCC-EEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHH
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFP-FLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRR 156 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~-~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~ 156 (241)
+..++||+||-|.-=|.-.-. |.++..+| ..-+ ++++- +. + ....++.+++.
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~-ia~~~~ad~~~~~~v~V~~-------~i-G----------------ERgrEv~efi~- 193 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQ-IARQATVRGEESEFAVVFA-------AM-G----------------ITYEEANFFMK- 193 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHH-HHHhhcccCCCCceEEEEE-------Ec-c----------------ccchHHHHHHH-
Confidence 356899999888877765554 76666554 1111 23322 00 1 11123333333
Q ss_pred HHHHHHHhC-CcEEEEeCCchhh-hHHHHhccCCCCeeeccHHHHHHHH-HhcCCCCCCCCCCEEEEEecHHHHhhhhHH
Q 026201 157 KRVFLEKAG-ARCIVMPCHLSHI-WHDEVCKGCSVPFLHVSECVAKELK-EANMKPLEAGSPLRIGVLAKNAILTAGFYQ 233 (241)
Q Consensus 157 ~~~~Le~~G-ad~IvIaCNTAH~-~~d~l~~~~~vPil~Iid~t~~~i~-~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~ 233 (241)
.+...| -+-.|+-+||+.- ...+++. |... -..+++.+ +.| ++|.|+.++-|.-...|.
T Consensus 194 ---~~~~~~~l~rtvvv~atsd~p~~~R~~a----~~~a--~tiAEyfr~d~G---------~~VLli~DslTR~A~A~R 255 (458)
T TIGR01041 194 ---DFEETGALERAVVFLNLADDPAVERIVT----PRMA--LTAAEYLAFEKD---------MHVLVILTDMTNYCEALR 255 (458)
T ss_pred ---HHHhcCCcceEEEEEECCCCCHHHHHHH----HHHH--HHHHHHHHHccC---------CcEEEEEcChhHHHHHHH
Confidence 344444 5777777788875 3344332 2222 24666666 443 278888888887666665
Q ss_pred HH
Q 026201 234 EK 235 (241)
Q Consensus 234 ~~ 235 (241)
+.
T Consensus 256 EI 257 (458)
T TIGR01041 256 EI 257 (458)
T ss_pred HH
Confidence 53
No 305
>PRK05927 hypothetical protein; Provisional
Probab=36.88 E-value=42 Score=31.67 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=26.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE 108 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d 108 (241)
-+.|.|.||.+|..+.+||..+++...+.
T Consensus 93 ~~~i~i~gG~~p~~~~e~~~~~i~~ik~~ 121 (350)
T PRK05927 93 VKTVLLQGGVHPQLGIDYLEELVRITVKE 121 (350)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998876
No 306
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=36.49 E-value=1.8e+02 Score=27.22 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=49.9
Q ss_pred eCCChHHHHHHHHHHHHHhccC--CCCCEEE-ecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHH
Q 026201 87 GGASVDSTLNLLGKLVQLSGEE--NDFPFLL-CSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEK 163 (241)
Q Consensus 87 GGmGp~AT~~fy~kI~~~t~~d--~~~~~vi-~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~ 163 (241)
|| +.+--.+|...|++.+++. ...++-+ .+ + ++... ...+.++. .+.++.|++
T Consensus 184 GG-slenR~r~~~eiv~~ir~~vg~~~~v~iRl~-~---~~~~~---------------~G~~~~e~----~~~~~~l~~ 239 (343)
T cd04734 184 GG-SLENRMRFLLEVLAAVRAAVGPDFIVGIRIS-G---DEDTE---------------GGLSPDEA----LEIAARLAA 239 (343)
T ss_pred CC-CHHHHhHHHHHHHHHHHHHcCCCCeEEEEee-h---hhccC---------------CCCCHHHH----HHHHHHHHh
Confidence 55 6788889999999988875 2222222 11 0 00000 00122333 345678999
Q ss_pred hC-CcEEEEeCCch----------------h----hhHHHHhccCCCCeeeccH
Q 026201 164 AG-ARCIVMPCHLS----------------H----IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 164 ~G-ad~IvIaCNTA----------------H----~~~d~l~~~~~vPil~Iid 196 (241)
+| +|+|-+...+. + .+...+++.+++|++-..+
T Consensus 240 ~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~ 293 (343)
T cd04734 240 EGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGR 293 (343)
T ss_pred cCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCC
Confidence 98 89999854321 1 1235678888999887654
No 307
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=36.36 E-value=50 Score=30.90 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=44.2
Q ss_pred HHHHHhCCcEEEEeC-CchhhhHHHHhcc-----------CCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHH
Q 026201 159 VFLEKAGARCIVMPC-HLSHIWHDEVCKG-----------CSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (241)
Q Consensus 159 ~~Le~~Gad~IvIaC-NTAH~~~d~l~~~-----------~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T 226 (241)
+.|++.+.|+|++.+ +|+..|++.+.+. .++.++.|...|++++.+.|++ + .++.+.|
T Consensus 195 ~~l~~~~~d~v~FtS~stv~~f~~~l~~~~~~~~~~~~~~~~~~i~aIGp~Ta~al~~~G~~---------~-~vp~~~t 264 (381)
T PRK07239 195 DAIASRGLDAVTFTSAPAVAALLERAREMGLLDQLLAALRTDVLAACVGPVTAAPLVRAGVP---------T-SAPERMR 264 (381)
T ss_pred HHHHcCCccEEEEcCHHHHHHHHHHHHHcCChHHHHHhhccCCEEEEECHHHHHHHHHcCCC---------c-cCCCCCC
Confidence 456677899999986 6666777766531 3567899999999999998764 3 3577776
Q ss_pred Hh
Q 026201 227 LT 228 (241)
Q Consensus 227 ~~ 228 (241)
++
T Consensus 265 ~~ 266 (381)
T PRK07239 265 LG 266 (381)
T ss_pred HH
Confidence 55
No 308
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=36.13 E-value=71 Score=32.64 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh--HHHHhcc-----CCCCeee
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKG-----CSVPFLH 193 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~-----~~vPil~ 193 (241)
-++.|+++|||.|=+++++.-.. +..|++. +++|++-
T Consensus 50 Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVA 93 (606)
T PRK00694 50 QICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVA 93 (606)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEe
Confidence 34679999999999999998875 5777777 8999863
No 309
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=35.84 E-value=2e+02 Score=26.43 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=51.9
Q ss_pred CCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201 80 ANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (241)
Q Consensus 80 ~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (241)
.++|+|+. |-|. -++.|.+..... -.+.+|+.|+|.........+. |+..... .+.+.++. =.
T Consensus 93 ~~kiavl~Sg~g~-----nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gI-p~~~~~~----~~~~~~~~---~~ 159 (289)
T PRK13010 93 RPKVVIMVSKFDH-----CLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDI-PFHHLPV----TPDTKAQQ---EA 159 (289)
T ss_pred CeEEEEEEeCCCc-----cHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCC-CEEEeCC----Ccccccch---HH
Confidence 45799986 6553 345555555543 5677888888876433222221 1111100 01111111 11
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
+..+.|++.++|+||++-- .+..-+.+-+.+.-.++||
T Consensus 160 ~~~~~l~~~~~Dlivlagy-m~il~~~~l~~~~~~iiNi 197 (289)
T PRK13010 160 QILDLIETSGAELVVLARY-MQVLSDDLSRKLSGRAINI 197 (289)
T ss_pred HHHHHHHHhCCCEEEEehh-hhhCCHHHHhhccCCceee
Confidence 2346788999999999842 2333344444555456665
No 310
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=35.75 E-value=1.9e+02 Score=27.37 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=12.3
Q ss_pred CCeEEEEeCCChHHHH
Q 026201 80 ANTVGIVGGASVDSTL 95 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~ 95 (241)
+++||||||.|-..+.
T Consensus 98 ~~~I~IiGG~GlmG~s 113 (374)
T PRK11199 98 LRPVVIVGGKGQLGRL 113 (374)
T ss_pred cceEEEEcCCChhhHH
Confidence 5789999988776554
No 311
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=35.54 E-value=1.3e+02 Score=30.00 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=39.3
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH---HHHHHHHhcCCCCCCCCCCEEEEEecHHHHh
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC---VAKELKEANMKPLEAGSPLRIGVLAKNAILT 228 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~---t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~ 228 (241)
+.+++.|+|+|+-.-.|+. .|++.+++|+|.|--. ..+.++... .-..+||++|=+.++.
T Consensus 48 ~~~~~~~~dviIsrG~ta~----~i~~~~~iPVv~i~~s~~Dil~al~~a~------~~~~~ia~vg~~~~~~ 110 (526)
T TIGR02329 48 QRLGAERCDVVVAGGSNGA----YLKSRLSLPVIVIKPTGFDVMQALARAR------RIASSIGVVTHQDTPP 110 (526)
T ss_pred HHHHhCCCcEEEECchHHH----HHHHhCCCCEEEecCChhhHHHHHHHHH------hcCCcEEEEecCcccH
Confidence 5577889999999888875 4567788999887322 122232221 1134899999766644
No 312
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=35.21 E-value=2e+02 Score=24.81 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCcEEEEeCCchh--------hhHHHHhccCCCCeeecc
Q 026201 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH--------~~~d~l~~~~~vPil~Ii 195 (241)
+.++.+++.|+|.|++-.-+.. .+++++++.+++|++-..
T Consensus 157 ~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~G 204 (232)
T TIGR03572 157 EWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALG 204 (232)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEEC
Confidence 4557889999999998874442 345778888899988654
No 313
>KOG3406 consensus 40S ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=35.18 E-value=78 Score=26.19 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCchhhhH----HHHhccCCCCeeeccHH
Q 026201 149 LIVENLRRKRVFLEKAGARCIVMPCHLSHIWH----DEVCKGCSVPFLHVSEC 197 (241)
Q Consensus 149 ~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~----d~l~~~~~vPil~Iid~ 197 (241)
.+..-+.+..+.|.+..|-+.|++-|-..+-| +.|.+..++|+|.+.++
T Consensus 34 GlarGi~Ea~KaldkrqA~lcvLaencdep~yvKLVeALcaeh~iplikV~d~ 86 (134)
T KOG3406|consen 34 GLARGIHEAAKALDKRQAHLCVLAENCDEPMYVKLVEALCAEHQIPLIKVGDA 86 (134)
T ss_pred hHHhHHHHHHHHHhhCceeEEEEeccCCchHHHHHHHHHHhhcCCCeEEeccc
Confidence 34555788889999999999999988766654 55666779999999875
No 314
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=35.13 E-value=74 Score=28.44 Aligned_cols=42 Identities=7% Similarity=-0.025 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCcEEEEeCCchh-----h-hHHHHhccCC-CCeeeccH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSH-----I-WHDEVCKGCS-VPFLHVSE 196 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH-----~-~~d~l~~~~~-vPil~Iid 196 (241)
.+.++.|+++|||.|.+-+-+.. . +..++++.++ +|||...+
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGg 199 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNS 199 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECC
Confidence 35567899999999999877742 1 2477888874 99998755
No 315
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=35.08 E-value=22 Score=31.96 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.2
Q ss_pred CCeEEEEeCCChHH
Q 026201 80 ANTVGIVGGASVDS 93 (241)
Q Consensus 80 ~k~IGIIGGmGp~A 93 (241)
|.+||||||||.+.
T Consensus 1 ~~~igII~gsgl~~ 14 (261)
T PRK08666 1 MVRIAIIGGSGVYD 14 (261)
T ss_pred CCcEEEEecCCCCc
Confidence 56899999999975
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=34.95 E-value=1.9e+02 Score=26.73 Aligned_cols=90 Identities=22% Similarity=0.267 Sum_probs=50.4
Q ss_pred CCeEEEEe--CCChHHHHHHHHHHHHHhccC-CCCCEEEecCccch---HHhhhc-------CCChhhhhcccCCCCCCC
Q 026201 80 ANTVGIVG--GASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLN---KELLSH-------DRSSFSSLNCKGGGVQLD 146 (241)
Q Consensus 80 ~k~IGIIG--GmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~---d~ll~~-------~~~~~~~~~~~~~~~~~d 146 (241)
...|||-| |.|=- -|...+.....++ ...-++ .-||.-| -.|+++ ..|+.-+.+... ..+.
T Consensus 29 a~~iGiTG~PGaGKS---Tli~~l~~~~~~~g~~VaVl-AVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~a--tRG~ 102 (266)
T PF03308_consen 29 AHVIGITGPPGAGKS---TLIDALIRELRERGKRVAVL-AVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMA--TRGS 102 (266)
T ss_dssp SEEEEEEE-TTSSHH---HHHHHHHHHHHHTT--EEEE-EE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-----SS
T ss_pred ceEEEeeCCCCCcHH---HHHHHHHHHHhhcCCceEEE-EECCCCCCCCCcccccHHHhcCcCCCCCEEEeecC--cCCC
Confidence 55899998 77655 4556666666555 444433 3467654 123322 233433333322 3344
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCCc
Q 026201 147 DSLIVENLRRKRVFLEKAGARCIVMPCHL 175 (241)
Q Consensus 147 ~~~i~~~l~~~~~~Le~~Gad~IvIaCNT 175 (241)
---+-..+.++++.|+.+|.|.|+|=+--
T Consensus 103 lGGls~~t~~~v~ll~aaG~D~IiiETVG 131 (266)
T PF03308_consen 103 LGGLSRATRDAVRLLDAAGFDVIIIETVG 131 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEEES
T ss_pred CCCccHhHHHHHHHHHHcCCCEEEEeCCC
Confidence 45677778888999999999999996543
No 317
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=34.92 E-value=59 Score=29.52 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCc----hhhhHHHHhccCCCCe
Q 026201 143 VQLDDSLIVENLRRKRVFLEKAGARCIVMPCHL----SHIWHDEVCKGCSVPF 191 (241)
Q Consensus 143 ~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNT----AH~~~d~l~~~~~vPi 191 (241)
...+.+++.++.++.++.|.+.|||+|++=+.. +....+.+++..+.|+
T Consensus 126 ~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~~p~ 178 (305)
T PF02574_consen 126 YGLSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTGLPV 178 (305)
T ss_dssp CTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHHCCS
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhhhhc
Confidence 345667899999999999999999999998655 3444566666334443
No 318
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.92 E-value=2.8e+02 Score=23.44 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHhCCcEEEE-eCC--chh---hhHHHHhccCCCCeeecc--------------------HHHHHHHHHhcCCCC
Q 026201 157 KRVFLEKAGARCIVM-PCH--LSH---IWHDEVCKGCSVPFLHVS--------------------ECVAKELKEANMKPL 210 (241)
Q Consensus 157 ~~~~Le~~Gad~IvI-aCN--TAH---~~~d~l~~~~~vPil~Ii--------------------d~t~~~i~~~~~k~~ 210 (241)
.++.|.+.++|.|++ +++ ..+ ..++++.+ .++|++-+- ..+++.+.+.|.+
T Consensus 47 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~-~~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~g~~-- 123 (273)
T cd06292 47 YVEDLLARGVRGVVFISSLHADTHADHSHYERLAE-RGLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVALGHR-- 123 (273)
T ss_pred HHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHh-CCCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHHCCCc--
Confidence 345677889997776 432 222 12344432 345544431 2334556555544
Q ss_pred CCCCCCEEEEEecHH----H-HhhhhHHHHHHhcC
Q 026201 211 EAGSPLRIGVLAKNA----I-LTAGFYQEKLQHED 240 (241)
Q Consensus 211 ~~~~~~rVGLLaT~~----T-~~s~~Y~~~L~~~G 240 (241)
+|++++-.. + .+..-|++.++++|
T Consensus 124 ------~i~~i~~~~~~~~~~~R~~gf~~~~~~~~ 152 (273)
T cd06292 124 ------RIGFASGPGRTVPRRRKIAGFRAALEEAG 152 (273)
T ss_pred ------eEEEEeCCcccccHHHHHHHHHHHHHHcC
Confidence 899885321 1 22334677777765
No 319
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=34.91 E-value=1e+02 Score=27.26 Aligned_cols=33 Identities=9% Similarity=0.214 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCchhh---hHHHHh
Q 026201 152 ENLRRKRVFLEKAGARCIVMPCHLSHI---WHDEVC 184 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~---~~d~l~ 184 (241)
..+...+-.+.+.|+++|++-|-+... |...|+
T Consensus 53 gr~Akl~pEF~KRnvKlialS~d~vesH~~Wi~DIk 88 (224)
T KOG0854|consen 53 GRFAKLAPEFDKRNVKLIALSVDDVESHKDWIKDIK 88 (224)
T ss_pred HHHHhhChhhhhcCceEEEeehhhHHHHHHHHHHHH
Confidence 334444556789999999999998755 666663
No 320
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=34.89 E-value=54 Score=30.36 Aligned_cols=64 Identities=20% Similarity=0.129 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHH-------H--HHHHHhcCCCCCCCCCCEEEEEec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECV-------A--KELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t-------~--~~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
+.+.++.|.+. +|+|++=+. .|....++.+..++||||..+.. + -.+++... ..++.||+++|-
T Consensus 83 l~Dt~~vls~y-~D~iviR~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g----~l~g~kva~vGD 155 (302)
T PRK14805 83 VADFAANLSCW-ADAIVARVF-SHSTIEQLAEHGSVPVINALCDLYHPCQALADFLTLAEQFG----DVSKVKLAYVGD 155 (302)
T ss_pred HHHHHHHHHHh-CCEEEEeCC-ChhHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhC----CcCCcEEEEEcC
Confidence 44555678888 999999865 56677888888999999987631 1 11333211 124569999996
No 321
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=34.83 E-value=2.7e+02 Score=25.43 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhh-hHHHHhccCCCCeeec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHI-WHDEVCKGCSVPFLHV 194 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~-~~d~l~~~~~vPil~I 194 (241)
...+++.| +.|+.+|+=|..+... ....+.+..+||+|..
T Consensus 52 ~~~~c~ll-~~~V~aiiGp~~s~~~~~~~~~~~~~~iP~i~~ 92 (382)
T cd06380 52 TNAICSQL-SRGVFAIFGSYDKSSVNTLTSYSDALHVPFITP 92 (382)
T ss_pred HHHHHHHH-hcCcEEEEecCcHHHHHHHHHHHhcCCCCeEec
Confidence 34445666 4599988877654433 2466777788888753
No 322
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=34.62 E-value=52 Score=26.31 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=30.9
Q ss_pred HHHHHHhCCc-EEEEeCCchhhhHHHHhccCCCCeeeccHHHH
Q 026201 158 RVFLEKAGAR-CIVMPCHLSHIWHDEVCKGCSVPFLHVSECVA 199 (241)
Q Consensus 158 ~~~Le~~Gad-~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~ 199 (241)
++.|++.|++ ++.+|+.....+++.+. ..++.++....+..
T Consensus 4 ~~~L~~~Gv~~vfg~pg~~~~~l~~~~~-~~~~~~i~~~~E~~ 45 (155)
T cd07035 4 VEALKAEGVDHVFGVPGGAILPLLDALA-RSGIRYILVRHEQG 45 (155)
T ss_pred HHHHHHcCCCEEEECCCCchHHHHHHhc-cCCCEEEEeCCHHH
Confidence 4689999997 67789877777788887 45677777766543
No 323
>PLN02342 ornithine carbamoyltransferase
Probab=34.61 E-value=57 Score=30.98 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH-------HH--HHHHHhcCCCCCCCCCCEEEEEec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VA--KELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~-------t~--~~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
+.+.++.|.+. +|+||+=+. .|...+++.+..++||||..+. .+ -.+.+... ...+.+|+++|-
T Consensus 130 l~DTarvLs~y-~D~IviR~~-~~~~~~~la~~~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G----~l~glkva~vGD 202 (348)
T PLN02342 130 TRDIARVLSRY-NDIIMARVF-AHQDVLDLAEYSSVPVINGLTDYNHPCQIMADALTIIEHIG----RLEGTKVVYVGD 202 (348)
T ss_pred HHHHHHHHHHh-CCEEEEeCC-ChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhC----CcCCCEEEEECC
Confidence 45556788888 999999865 5667788999999999997542 11 11333211 134579999986
No 324
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=34.58 E-value=1.7e+02 Score=27.86 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=7.0
Q ss_pred HHHHHhCCcEEEEe
Q 026201 159 VFLEKAGARCIVMP 172 (241)
Q Consensus 159 ~~Le~~Gad~IvIa 172 (241)
+.+.++|||.|.|-
T Consensus 196 ~~qi~aGAdavqif 209 (352)
T COG0407 196 KAQIEAGADAVQIF 209 (352)
T ss_pred HHHHHhCCCEEEee
Confidence 33345555555554
No 325
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=34.54 E-value=2e+02 Score=25.69 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCcEEEEeCCchhh--------hHHHHhccCCCCee
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~~vPil 192 (241)
+.++..++.|+|.|++.-...+. ++++|.+..++|++
T Consensus 86 ~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~ 130 (284)
T cd00950 86 ELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVI 130 (284)
T ss_pred HHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 34456778888877665443322 34666666677755
No 326
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.25 E-value=2.1e+02 Score=27.11 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHHHhccC--CCCCEEE-ecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCC
Q 026201 90 SVDSTLNLLGKLVQLSGEE--NDFPFLL-CSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGA 166 (241)
Q Consensus 90 Gp~AT~~fy~kI~~~t~~d--~~~~~vi-~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Ga 166 (241)
+.+--..|...|++.+++. +..++.+ .| +.-. .+.. .....+.++. .+.++.|++.|+
T Consensus 189 slenR~Rf~~eii~air~~vG~d~~v~vRis-~~~~-------~~~~-------~~~g~~~~e~----~~~~~~l~~~gv 249 (361)
T cd04747 189 SLAARSRFAAEVVKAIRAAVGPDFPIILRFS-QWKQ-------QDYT-------ARLADTPDEL----EALLAPLVDAGV 249 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEC-cccc-------cccc-------cCCCCCHHHH----HHHHHHHHHcCC
Confidence 6677788999999998875 3444444 23 1000 0000 0001223333 345567899999
Q ss_pred cEEEEeCCch--------h-hhHHHHhccCCCCeeeccH
Q 026201 167 RCIVMPCHLS--------H-IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 167 d~IvIaCNTA--------H-~~~d~l~~~~~vPil~Iid 196 (241)
|+|=+-|-.. + .+...+++..++|++-...
T Consensus 250 d~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~ 288 (361)
T cd04747 250 DIFHCSTRRFWEPEFEGSELNLAGWTKKLTGLPTITVGS 288 (361)
T ss_pred CEEEecCCCccCCCcCccchhHHHHHHHHcCCCEEEECC
Confidence 9988866421 1 1235577778888877643
No 327
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=34.05 E-value=3.2e+02 Score=24.13 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCcEEEEeCCchh--------hhHHHHhccCCCCeeecc----HHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 026201 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVS----ECVAKELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH--------~~~d~l~~~~~vPil~Ii----d~t~~~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
+.++.++..|+|.+.+.=-+.- .+..++.+.+++|+.--. ..-++.+...|.+ +| ++||
T Consensus 34 ~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~--------~v-ivgt 104 (254)
T TIGR00735 34 ELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGAD--------KV-SINT 104 (254)
T ss_pred HHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCC--------EE-EECh
Confidence 3456788899998877533322 135777788888876421 1234444455554 66 8899
Q ss_pred HHHHhhhhHHHHHHh
Q 026201 224 NAILTAGFYQEKLQH 238 (241)
Q Consensus 224 ~~T~~s~~Y~~~L~~ 238 (241)
..--.-.++++..+.
T Consensus 105 ~~~~~p~~~~~~~~~ 119 (254)
T TIGR00735 105 AAVKNPELIYELADR 119 (254)
T ss_pred hHhhChHHHHHHHHH
Confidence 887766666665544
No 328
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=34.03 E-value=53 Score=24.23 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCCCCCCCCCEEEEEecHHH
Q 026201 197 CVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (241)
Q Consensus 197 ~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T 226 (241)
+.++.+.+.|++ |.||++|
T Consensus 4 ~~~~~l~~lG~~-----------i~AT~gT 22 (90)
T smart00851 4 ELAKRLAELGFE-----------LVATGGT 22 (90)
T ss_pred HHHHHHHHCCCE-----------EEEccHH
Confidence 345556665554 5677776
No 329
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=33.94 E-value=2.1e+02 Score=26.22 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=0.0
Q ss_pred EEEEe--CCChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 83 VGIVG--GASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 83 IGIIG--GmGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
|-|.| |=++.=|.+=.+++++.+.+. +..++++-- ...+.++.++..+
T Consensus 46 i~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv-------------------------~~~~t~~ai~~a~--- 97 (309)
T cd00952 46 ILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGA-------------------------TTLNTRDTIARTR--- 97 (309)
T ss_pred EEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe-------------------------ccCCHHHHHHHHH---
Q ss_pred HHHHHhCCcEEEEeCCchhh--------hHHHHhccC-CCCee
Q 026201 159 VFLEKAGARCIVMPCHLSHI--------WHDEVCKGC-SVPFL 192 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~-~vPil 192 (241)
..++.|||.+++.-.-... +++.|.+.+ ++|++
T Consensus 98 -~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~ 139 (309)
T cd00952 98 -ALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIA 139 (309)
T ss_pred -HHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEE
No 330
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=33.92 E-value=1.9e+02 Score=25.61 Aligned_cols=36 Identities=6% Similarity=0.017 Sum_probs=20.1
Q ss_pred HHHHHHhCCcEEEE-eCCch--hhhHHHHhccCCCCeeec
Q 026201 158 RVFLEKAGARCIVM-PCHLS--HIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 158 ~~~Le~~Gad~IvI-aCNTA--H~~~d~l~~~~~vPil~I 194 (241)
++.|...++|.|++ |++.. ...+++++ ..++|+|-+
T Consensus 50 i~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~~giPvV~~ 88 (303)
T cd01539 50 IDTALAKGVDLLAVNLVDPTAAQTVINKAK-QKNIPVIFF 88 (303)
T ss_pred HHHHHHcCCCEEEEecCchhhHHHHHHHHH-HCCCCEEEe
Confidence 35677889997666 55521 22334443 346776653
No 331
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=33.82 E-value=2.3e+02 Score=24.71 Aligned_cols=25 Identities=24% Similarity=0.085 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEeC
Q 026201 145 LDDSLIVENLRRKRVFLEKAGARCIVMPC 173 (241)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvIaC 173 (241)
.+++++.+.+ +...+.|||++=|++
T Consensus 132 p~~~~l~~~~----~~~~~~gaDivKia~ 156 (228)
T TIGR01093 132 PSWEEIVERL----EKALSYGADIVKIAV 156 (228)
T ss_pred CCHHHHHHHH----HHHHHhCCCEEEEEe
Confidence 3455655444 567788998765555
No 332
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=33.59 E-value=2.5e+02 Score=25.90 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=50.0
Q ss_pred CChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCC
Q 026201 89 ASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGA 166 (241)
Q Consensus 89 mGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Ga 166 (241)
-+.+--.+|...|++.+++. +..++.+--.+. +. .....+.++ ..+.++.|++.|+
T Consensus 198 gsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~-------------~~-----~~~g~~~~e----~~~ia~~Le~~gv 255 (336)
T cd02932 198 GSLENRMRFLLEVVDAVRAVWPEDKPLFVRISAT-------------DW-----VEGGWDLED----SVELAKALKELGV 255 (336)
T ss_pred CCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccc-------------cc-----CCCCCCHHH----HHHHHHHHHHcCC
Confidence 36777778888888888865 344454422110 00 000112222 3355678999999
Q ss_pred cEEEEeCC---------c-hh---hhHHHHhccCCCCeeeccH
Q 026201 167 RCIVMPCH---------L-SH---IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 167 d~IvIaCN---------T-AH---~~~d~l~~~~~vPil~Iid 196 (241)
|+|-+-.. . .. .++.+|++.+++||+..-.
T Consensus 256 d~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~ 298 (336)
T cd02932 256 DLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGL 298 (336)
T ss_pred CEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCC
Confidence 99986311 1 11 2346788889999987544
No 333
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=33.52 E-value=2.8e+02 Score=28.01 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH-HHHhccCCCCeeeccHHH-----HHH---HHHhcCCCCCCCCCCEEEEEecHH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECV-----AKE---LKEANMKPLEAGSPLRIGVLAKNA 225 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~-d~l~~~~~vPil~Iid~t-----~~~---i~~~~~k~~~~~~~~rVGLLaT~~ 225 (241)
.+.++..+..|+++ +|++.-....+ --+...+..|+|++.-.+ ... +.+. .+.-.|+.++-++
T Consensus 455 ~~~~~~~~~~~~~v-~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~-------p~g~pv~~v~i~~ 526 (577)
T PLN02948 455 FSYARSAHSRGLQV-IIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQM-------PRGVPVATVAIGN 526 (577)
T ss_pred HHHHHHHHHCCCCE-EEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcC-------CCCCeEEEEecCC
Confidence 33445677889984 34444433333 556667889999875432 122 2222 1223578887766
Q ss_pred HHhhhhHHHHH
Q 026201 226 ILTAGFYQEKL 236 (241)
Q Consensus 226 T~~s~~Y~~~L 236 (241)
.....++.-.+
T Consensus 527 ~~~aa~~a~~i 537 (577)
T PLN02948 527 ATNAGLLAVRM 537 (577)
T ss_pred hHHHHHHHHHH
Confidence 66666665443
No 334
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=33.48 E-value=28 Score=33.12 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=19.4
Q ss_pred CCeEEEEe-CCChHHHHHHHHHH
Q 026201 80 ANTVGIVG-GASVDSTLNLLGKL 101 (241)
Q Consensus 80 ~k~IGIIG-GmGp~AT~~fy~kI 101 (241)
|++|.||| |++.++++.++.+-
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~ 23 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKL 23 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhh
Confidence 67899999 99999999988874
No 335
>COG1903 CbiD Cobalamin biosynthesis protein CbiD [Coenzyme metabolism]
Probab=33.43 E-value=1.3e+02 Score=28.96 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeeccH---HHHHHHHHhcCCCCCCCCCCEEEEEecHHH
Q 026201 151 VENLRRKRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHVSE---CVAKELKEANMKPLEAGSPLRIGVLAKNAI 226 (241)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~Iid---~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T 226 (241)
..-+...++...+.|.+.+++ |-|+.--+..++-.....-|+.|.+ ...+++.+.+.+ +|.++|=++-
T Consensus 188 ~~si~~~l~~~r~~~~~~iv~~~Gn~g~~~a~~~~~~~~~~~v~~~n~vG~~l~~a~~~~~~--------~i~i~G~pGK 259 (367)
T COG1903 188 LASIRSELDVARAAGLDHVVFCPGNTGEDYARKLFILPEQAIVKMGNFVGSMLKEARELGVK--------EILIFGHPGK 259 (367)
T ss_pred HHHHHHHHHHHHhcCCcEEEEccChhHHHHHHHhcCCchHHHhhHHHHHHHHHHHHHhcCCC--------EEEEEcChHH
Confidence 334444455555668886665 4577776665554443333444444 455556665555 8999988775
Q ss_pred H
Q 026201 227 L 227 (241)
Q Consensus 227 ~ 227 (241)
+
T Consensus 260 L 260 (367)
T COG1903 260 L 260 (367)
T ss_pred H
Confidence 4
No 336
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=33.41 E-value=77 Score=27.22 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCcEEEEeCCch--------hhhHHHHhccCCCCeeecc
Q 026201 156 RKRVFLEKAGARCIVMPCHLS--------HIWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTA--------H~~~d~l~~~~~vPil~Ii 195 (241)
+.++.+++.|++.|++-.++. -..+.++.+.+++|++--.
T Consensus 150 e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~G 197 (233)
T PRK00748 150 DLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASG 197 (233)
T ss_pred HHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeC
Confidence 345678999999777776654 2345788888889988654
No 337
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=33.29 E-value=2.2e+02 Score=25.68 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchh-h------hHHHHhccCCCC-eeec---------cHHHHHHHHHhcCCCCCCCCCC
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSH-I------WHDEVCKGCSVP-FLHV---------SECVAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH-~------~~d~l~~~~~vP-il~I---------id~t~~~i~~~~~k~~~~~~~~ 216 (241)
+.+.++.|...|+|+|-++++..- . ....|++..++| +.|+ ++.....+.+.|++
T Consensus 17 l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~-------- 88 (272)
T TIGR00676 17 LWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIR-------- 88 (272)
T ss_pred HHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCC--------
Confidence 445567899999999999999652 1 236677666654 5554 22233344555665
Q ss_pred EEEEEecHHH
Q 026201 217 RIGVLAKNAI 226 (241)
Q Consensus 217 rVGLLaT~~T 226 (241)
.|.+|.-+..
T Consensus 89 nvL~l~GD~~ 98 (272)
T TIGR00676 89 HILALRGDPP 98 (272)
T ss_pred EEEEeCCCCC
Confidence 6776655443
No 338
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=33.18 E-value=2.9e+02 Score=23.13 Aligned_cols=74 Identities=12% Similarity=0.008 Sum_probs=37.4
Q ss_pred HHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeeec------------------cHHHHHHHHHhcCCCCCCCCCCEE
Q 026201 158 RVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLHV------------------SECVAKELKEANMKPLEAGSPLRI 218 (241)
Q Consensus 158 ~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~I------------------id~t~~~i~~~~~k~~~~~~~~rV 218 (241)
++.|.+.++|.|++ +++.......+.. ..++|++-+ ...+++.+.+.|. ++|
T Consensus 49 ~~~l~~~~vdgiii~~~~~~~~~~~~~~-~~~ipvv~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~--------~~i 119 (264)
T cd01574 49 VRRLLAQRVDGVIVNAPLDDADAALAAA-PADVPVVFVDGSPSPRVSTVSVDQEGGARLATEHLLELGH--------RTI 119 (264)
T ss_pred HHHHHhcCCCEEEEeCCCCChHHHHHHH-hcCCCEEEEeccCCCCCCEEEeCcHHHHHHHHHHHHHCCC--------CEE
Confidence 34567778887765 5554332222222 223444433 2234444544443 489
Q ss_pred EEEecHHH-----HhhhhHHHHHHhcC
Q 026201 219 GVLAKNAI-----LTAGFYQEKLQHED 240 (241)
Q Consensus 219 GLLaT~~T-----~~s~~Y~~~L~~~G 240 (241)
++++.+.. .+..-|.+.+++.|
T Consensus 120 ~~i~~~~~~~~~~~r~~gf~~~l~~~~ 146 (264)
T cd01574 120 AHVAGPEEWLSARARLAGWRAALEAAG 146 (264)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHCC
Confidence 99965322 23334666666554
No 339
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=33.11 E-value=1.6e+02 Score=23.14 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=33.4
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHH---hccCCCCeeeccHHHHHHHHHh
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEV---CKGCSVPFLHVSECVAKELKEA 205 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l---~~~~~vPil~Iid~t~~~i~~~ 205 (241)
..+.|++..+.+|++|.|......+.+ .+..+||++.... +-+++-.+
T Consensus 33 vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~-t~~eLG~A 83 (108)
T PTZ00106 33 TLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAG-NNNDLGTA 83 (108)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCC-CHHHHHHH
Confidence 345677888999999999998876555 4556899875322 33455443
No 340
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=32.81 E-value=64 Score=30.30 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH-------HHH--HHHHhcCCCCCCCCCCEEEEEec-
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAK--ELKEANMKPLEAGSPLRIGVLAK- 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~-------t~~--~i~~~~~k~~~~~~~~rVGLLaT- 223 (241)
+.+.++.|.+. +|+||+=+. .|....++.+..++||||..+. .+. .+.+.... ...+.+|+++|=
T Consensus 91 l~DTarvls~y-~D~iv~R~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~---~l~gl~ia~vGD~ 165 (334)
T PRK01713 91 MKDTARVLGRM-YDAIEYRGF-KQSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIENCDK---PLSEISYVYIGDA 165 (334)
T ss_pred HHHHHHHHHHh-CCEEEEEcC-chHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHcCC---CcCCcEEEEECCC
Confidence 45556788888 999999866 5667788888899999998551 111 13332110 123569999986
Q ss_pred -HHHHhhh
Q 026201 224 -NAILTAG 230 (241)
Q Consensus 224 -~~T~~s~ 230 (241)
.+|..|-
T Consensus 166 ~~~v~~Sl 173 (334)
T PRK01713 166 RNNMGNSL 173 (334)
T ss_pred ccCHHHHH
Confidence 3444443
No 341
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=32.45 E-value=1.1e+02 Score=27.34 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 142 GVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 142 ~~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
+...|++.+.+.+ ++|.+.|++-+++...|.-.+
T Consensus 15 dg~iD~~~~~~~i----~~l~~~Gv~gl~v~GstGE~~ 48 (284)
T cd00950 15 DGSVDFDALERLI----EFQIENGTDGLVVCGTTGESP 48 (284)
T ss_pred CCCcCHHHHHHHH----HHHHHcCCCEEEECCCCcchh
Confidence 4567887776655 689999999999998886554
No 342
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=32.30 E-value=78 Score=29.36 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCcEEEEeCCchh---------hhHHHHhccCCCCeeeccHH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSH---------IWHDEVCKGCSVPFLHVSEC 197 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH---------~~~d~l~~~~~vPil~Iid~ 197 (241)
.+.++.|+++|+|.|.+-+=|.. .+..++++.+++|++...+.
T Consensus 152 ~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI 203 (321)
T PRK10415 152 VEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDI 203 (321)
T ss_pred HHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCC
Confidence 34556799999999988776531 12467888899999988765
No 343
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=32.20 E-value=3.6e+02 Score=23.95 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=22.1
Q ss_pred HHHHHHH-hCCcEEEEeCCchhhh-HHHHhccCCCCeee
Q 026201 157 KRVFLEK-AGARCIVMPCHLSHIW-HDEVCKGCSVPFLH 193 (241)
Q Consensus 157 ~~~~Le~-~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~ 193 (241)
.++.|.+ .++++|+-++.+.... ...+-+..++|+|.
T Consensus 58 ~a~~li~~~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~ 96 (346)
T cd06330 58 EARELVENEGVDMLIGLISSGVALAVAPVAEELKVFFIA 96 (346)
T ss_pred HHHHHHhccCCcEEEcccchHHHHHHHHHHHHcCCeEEE
Confidence 3344554 4999999877655443 23344455777765
No 344
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=32.19 E-value=1.5e+02 Score=25.38 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=11.1
Q ss_pred HHHHHHhCCcEEEEeC
Q 026201 158 RVFLEKAGARCIVMPC 173 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaC 173 (241)
++.+...++|.|++..
T Consensus 47 i~~~~~~~~dgiii~~ 62 (289)
T cd01540 47 IDNLGAQGAKGFVICV 62 (289)
T ss_pred HHHHHHcCCCEEEEcc
Confidence 3456778999777743
No 345
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=32.12 E-value=2.1e+02 Score=27.22 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCcEEEEeCCch---------h--------hhHHHHhccCCCCeeeccHH----HHHHHHHhcCCCCCCCC
Q 026201 156 RKRVFLEKAGARCIVMPCHLS---------H--------IWHDEVCKGCSVPFLHVSEC----VAKELKEANMKPLEAGS 214 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTA---------H--------~~~d~l~~~~~vPil~Iid~----t~~~i~~~~~k~~~~~~ 214 (241)
+.++.|++.|+|+|-+..-+. + .+...+++.+++|++....- .++++.+.+.
T Consensus 256 ~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~------- 328 (382)
T cd02931 256 KAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGI------- 328 (382)
T ss_pred HHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCC-------
Confidence 456789999999998865431 1 12366888889998876543 3444444321
Q ss_pred CCEEEEEecHHHHhhhhHHHHH
Q 026201 215 PLRIGVLAKNAILTAGFYQEKL 236 (241)
Q Consensus 215 ~~rVGLLaT~~T~~s~~Y~~~L 236 (241)
--.--+|......-++.++..
T Consensus 329 -~D~V~~gR~~ladP~l~~k~~ 349 (382)
T cd02931 329 -ADMISLGRPLLADPDVVNKIR 349 (382)
T ss_pred -CCeeeechHhHhCccHHHHHH
Confidence 123345665555555555443
No 346
>PLN02527 aspartate carbamoyltransferase
Probab=32.11 E-value=67 Score=29.77 Aligned_cols=65 Identities=9% Similarity=0.138 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH--------H--HHHHHHhcCCCCCCCCCCEEEEEe
Q 026201 153 NLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC--------V--AKELKEANMKPLEAGSPLRIGVLA 222 (241)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~--------t--~~~i~~~~~k~~~~~~~~rVGLLa 222 (241)
.+.+.++.|.+. +|+||+=.. .|-...++.+..++||||..+- . +-.+.+... ..++.||+++|
T Consensus 85 s~~Dta~vls~y-~D~iviR~~-~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g----~l~g~kva~vG 158 (306)
T PLN02527 85 TLEDTIRTVEGY-SDIIVLRHF-ESGAARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQREIG----RLDGIKVGLVG 158 (306)
T ss_pred CHHHHHHHHHHh-CcEEEEECC-ChhHHHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHHHhC----CcCCCEEEEEC
Confidence 355566788888 999999865 4556788888999999998652 1 112333211 12456999999
Q ss_pred c
Q 026201 223 K 223 (241)
Q Consensus 223 T 223 (241)
-
T Consensus 159 D 159 (306)
T PLN02527 159 D 159 (306)
T ss_pred C
Confidence 5
No 347
>PRK13670 hypothetical protein; Provisional
Probab=32.08 E-value=2.8e+02 Score=26.69 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=15.2
Q ss_pred CCeEEEEe---CCChHHHHHHHHHHHHHhcc
Q 026201 80 ANTVGIVG---GASVDSTLNLLGKLVQLSGE 107 (241)
Q Consensus 80 ~k~IGIIG---GmGp~AT~~fy~kI~~~t~~ 107 (241)
||++|||- |.-- .-...++++.+...+
T Consensus 1 Mk~~GIIaEfdg~H~-GH~~~i~~a~~~a~~ 30 (388)
T PRK13670 1 MKVTGIIVEYNPFHN-GHLYHLNQAKKLTNA 30 (388)
T ss_pred CceeEEEeeeCCcCH-HHHHHHHHHHHHHhC
Confidence 67889986 5521 123455555555544
No 348
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=31.99 E-value=3.5e+02 Score=23.66 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=20.3
Q ss_pred HHHHHHHhCCcEEEEe-CCchh--hhHHHHhccCCCCeeec
Q 026201 157 KRVFLEKAGARCIVMP-CHLSH--IWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIa-CNTAH--~~~d~l~~~~~vPil~I 194 (241)
.++.|...++|.|++. ++..- ..+..+. -++|++-+
T Consensus 49 ~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~--~~iPvV~~ 87 (295)
T TIGR02955 49 QIEQCKSWGADAILLGTVSPEALNHDLAQLT--KSIPVFAL 87 (295)
T ss_pred HHHHHHHcCCCEEEEecCChhhhhHHHHHHh--cCCCEEEE
Confidence 4456788999987764 33211 2223332 26787644
No 349
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.98 E-value=3.3e+02 Score=23.88 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=46.4
Q ss_pred HHHHHHHhCCcEEEEeCCchhh--------hHHHHhccCCCCeeeccH----HHHHHHHHhcCCCCCCCCCCEEEEEecH
Q 026201 157 KRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFLHVSE----CVAKELKEANMKPLEAGSPLRIGVLAKN 224 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~~vPil~Iid----~t~~~i~~~~~k~~~~~~~~rVGLLaT~ 224 (241)
.++.++..|++.|.+.--++.- ...++.+.+++|++--.. ..++.+.+.|.. +| ++||.
T Consensus 35 ~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~--------~V-iigt~ 105 (253)
T PRK02083 35 LAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGAD--------KV-SINSA 105 (253)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCC--------EE-EEChh
Confidence 3456789999988887666531 346777888889764321 233444445543 55 78887
Q ss_pred HHHhhhhHHHHHHhc
Q 026201 225 AILTAGFYQEKLQHE 239 (241)
Q Consensus 225 ~T~~s~~Y~~~L~~~ 239 (241)
.--.-.++.+..+..
T Consensus 106 ~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 106 AVANPELISEAADRF 120 (253)
T ss_pred HhhCcHHHHHHHHHc
Confidence 665556666655543
No 350
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=31.88 E-value=1e+02 Score=28.40 Aligned_cols=104 Identities=18% Similarity=0.105 Sum_probs=55.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
-+.|.|.||.-|....++|..+++...+. -++.+..++..++ +.+.. ..+- ...+.+
T Consensus 89 ~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei-~~~~~---------------~~g~------~~~e~l 146 (340)
T TIGR03699 89 GTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEI-VYIAK---------------KEGL------SLREVL 146 (340)
T ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHH-HHHhc---------------cCCC------CHHHHH
Confidence 46899999988877888888888877655 2333322221110 00000 0000 014556
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhccCC---CCeeeccHHHHHHHHHhcCC
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCS---VPFLHVSECVAKELKEANMK 208 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~---vPil~Iid~t~~~i~~~~~k 208 (241)
+.|.++|++.+ +++.+-.+.+++++... ...=.. -.+++.+++.|++
T Consensus 147 ~~Lk~aG~~~~--~~~g~E~~~~~~~~~~~~~~~s~~~~-l~~i~~a~~~Gi~ 196 (340)
T TIGR03699 147 ERLKEAGLDSI--PGGGAEILSDRVRKIISPKKISSEEW-LEVMETAHKLGLP 196 (340)
T ss_pred HHHHHcCCCcC--CCCcccccCHHHHHhhCCCCCCHHHH-HHHHHHHHHcCCC
Confidence 78999999855 44444444456655432 111121 3456666777664
No 351
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=31.87 E-value=2.2e+02 Score=25.68 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred EEEEe--CCChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 83 VGIVG--GASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 83 IGIIG--GmGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
|-+.| |-++.=|.+=.+++++.+.+. +..+++.-- ...+.++.++..+
T Consensus 39 i~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv-------------------------~~~~~~~ai~~a~--- 90 (288)
T cd00954 39 LYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHV-------------------------GSLNLKESQELAK--- 90 (288)
T ss_pred EEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEecc-------------------------CCCCHHHHHHHHH---
Q ss_pred HHHHHhCCcEEEEeCCchhh--------hHHHHhccC-CCCee
Q 026201 159 VFLEKAGARCIVMPCHLSHI--------WHDEVCKGC-SVPFL 192 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~-~vPil 192 (241)
..++.|||.+++...-... ++++|.+.+ ++|++
T Consensus 91 -~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~ 132 (288)
T cd00954 91 -HAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMI 132 (288)
T ss_pred -HHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEE
No 352
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=31.77 E-value=1.9e+02 Score=24.59 Aligned_cols=60 Identities=20% Similarity=0.151 Sum_probs=37.3
Q ss_pred HHHHHHhCCcEEEEeCC---chhh--hHHHHhccCCCCeeec---cHH-HHHHHHHhcCCCCCCCCCCEEEEEecHH
Q 026201 158 RVFLEKAGARCIVMPCH---LSHI--WHDEVCKGCSVPFLHV---SEC-VAKELKEANMKPLEAGSPLRIGVLAKNA 225 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaCN---TAH~--~~d~l~~~~~vPil~I---id~-t~~~i~~~~~k~~~~~~~~rVGLLaT~~ 225 (241)
++..++.||+.|-+.+- .... ..+.+++.+++||+-. .+. -++.+.+.|.+ .|-|.++.-
T Consensus 37 A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad--------~v~l~~~~~ 105 (217)
T cd00331 37 AKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGAD--------AVLLIVAAL 105 (217)
T ss_pred HHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCC--------EEEEeeccC
Confidence 45678899999865421 1111 2467777889998832 233 46677777776 666555543
No 353
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=31.73 E-value=2.1e+02 Score=26.20 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 150 IVENLRRKRVFLEKA--GARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 150 i~~~l~~~~~~Le~~--Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
+..++++.++.+.+. |+..+-++|+|.+ .++.+.+. ++-++++
T Consensus 213 ~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~-~~~~~~~~-~~~~~s~ 257 (335)
T cd00717 213 VLPYLKRIIEEVKKRLPGVPVILFAKGAGG-LLEDLAQL-GADVVGL 257 (335)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCCCHH-HHHHHHhc-CCCEEEe
Confidence 456778888888887 6778889999984 45666654 3455554
No 354
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=31.73 E-value=1.5e+02 Score=28.40 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchh--------hh--HHHHhccCCCCeee--ccH-HHHHHHHHhcCC
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSH--------IW--HDEVCKGCSVPFLH--VSE-CVAKELKEANMK 208 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH--------~~--~d~l~~~~~vPil~--Iid-~t~~~i~~~~~k 208 (241)
..+.++.++++|||+|++-.-|.. .| +.++.+..++|++. +.. ..+.++.+.|..
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaD 211 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAA 211 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCC
Confidence 345557789999999999754421 13 34566677999985 322 234445555544
No 355
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=31.67 E-value=94 Score=25.77 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=32.4
Q ss_pred HHHHHHhCCc-EEEEeCCchhhhHHHHhccCCCCeeeccHHHHHH
Q 026201 158 RVFLEKAGAR-CIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKE 201 (241)
Q Consensus 158 ~~~Le~~Gad-~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~ 201 (241)
++.|++.|++ ++.+|-+..-.+++.+.+.-++.++..-.+....
T Consensus 7 ~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~ 51 (164)
T cd07039 7 VETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAA 51 (164)
T ss_pred HHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHH
Confidence 4789999997 5667777777788999765568888776664433
No 356
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.58 E-value=91 Score=27.75 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
+.+.++.+++.|+++|+.--+......+.|.+..++|++.+
T Consensus 206 l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l 246 (266)
T cd01018 206 LKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTI 246 (266)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEe
Confidence 45566788999999999998888888999999999888663
No 357
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=31.56 E-value=3.2e+02 Score=25.20 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=46.8
Q ss_pred HHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeecc--------------------------HHHHHHHHHhcCCCCC
Q 026201 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHVS--------------------------ECVAKELKEANMKPLE 211 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~Ii--------------------------d~t~~~i~~~~~k~~~ 211 (241)
+.+.+.|+++|+=++++.... ...+-+.-++|+|+.. .+.++.+.+.+.
T Consensus 72 ~li~~~~V~~vvG~~~S~~~~a~~~v~~~~~i~~i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~---- 147 (366)
T COG0683 72 KLITQDGVDAVVGPTTSGVALAASPVAEEAGVPLISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGG---- 147 (366)
T ss_pred HHHhhcCceEEEEeccCcccccchhhHhhcCceEEeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcC----
Confidence 356679999999998888775 3556666677766652 223334443321
Q ss_pred CCCCCEEEEEecHHHHhhhh---HHHHHHhcC
Q 026201 212 AGSPLRIGVLAKNAILTAGF---YQEKLQHED 240 (241)
Q Consensus 212 ~~~~~rVGLLaT~~T~~s~~---Y~~~L~~~G 240 (241)
.+||.++..+...-.++ +++.|++.|
T Consensus 148 ---~k~v~ii~~~~~yg~~~~~~~~~~l~~~G 176 (366)
T COG0683 148 ---KKRVAIIGDDYAYGEGLADAFKAALKALG 176 (366)
T ss_pred ---CcEEEEEeCCCCcchhHHHHHHHHHHhCC
Confidence 14888888877655433 455566655
No 358
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=31.55 E-value=1.1e+02 Score=23.67 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccH
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid 196 (241)
+.++.+.+.|+..|+|.++.. +.++....+.+++.+.+
T Consensus 61 ~~~~~a~~~g~~iI~IT~~~~---l~~~~~~~~~~~~~~p~ 98 (119)
T cd05017 61 SAVEQAKERGAKIVAITSGGK---LLEMAREHGVPVIIIPK 98 (119)
T ss_pred HHHHHHHHCCCEEEEEeCCch---HHHHHHHcCCcEEECCC
Confidence 345567888999999998862 44455545677776543
No 359
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=31.52 E-value=98 Score=28.03 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 142 GVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 142 ~~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
+...|++.+.. .+++|.+.|++-|++...|.-.+
T Consensus 15 dg~iD~~~l~~----l~~~l~~~Gv~gi~v~GstGE~~ 48 (289)
T cd00951 15 DGSFDEDAYRA----HVEWLLSYGAAALFAAGGTGEFF 48 (289)
T ss_pred CCCcCHHHHHH----HHHHHHHcCCCEEEECcCCcCcc
Confidence 35667776654 44689999999999999987664
No 360
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=31.51 E-value=1.8e+02 Score=26.54 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCC
Q 026201 150 IVENLRRKRVFLEKAGARCIVMPCH 174 (241)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvIaCN 174 (241)
+.+.+.+.++.+.++|||.|.++=.
T Consensus 175 it~~~~~~~~~~ieaGad~i~i~d~ 199 (335)
T cd00717 175 LTDATIEYLKAQIEAGAQAVQIFDS 199 (335)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 3444555566566789999987743
No 361
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.49 E-value=2.3e+02 Score=21.32 Aligned_cols=92 Identities=22% Similarity=0.211 Sum_probs=47.6
Q ss_pred hhhccCCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHH-hhh-cCCChhhhhcccCCCCCCCHHHHH
Q 026201 75 ALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKE-LLS-HDRSSFSSLNCKGGGVQLDDSLIV 151 (241)
Q Consensus 75 ~~~~~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~-ll~-~~~~~~~~~~~~~~~~~~d~~~i~ 151 (241)
..+.+.++|=++| |-+..++.++-.++..... +.....+...... ... .+.+..-.. ...+.-..
T Consensus 8 ~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~i-----S~~g~~~~-- 75 (139)
T cd05013 8 DLLAKARRIYIFGVGSSGLVAEYLAYKLLRLGK-----PVVLLSDPHLQLMSAANLTPGDVVIAI-----SFSGETKE-- 75 (139)
T ss_pred HHHHhCCEEEEEEcCchHHHHHHHHHHHHHcCC-----ceEEecCHHHHHHHHHcCCCCCEEEEE-----eCCCCCHH--
Confidence 4556678999998 7666666666666544321 2222232222111 100 111211111 01122222
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCchhhhH
Q 026201 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWH 180 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~ 180 (241)
+.+.++.+.+.|++.|+|.+|......
T Consensus 76 --~~~~~~~a~~~g~~iv~iT~~~~~~l~ 102 (139)
T cd05013 76 --TVEAAEIAKERGAKVIAITDSANSPLA 102 (139)
T ss_pred --HHHHHHHHHHcCCeEEEEcCCCCChhH
Confidence 344556788899999999999775543
No 362
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=31.34 E-value=4.2e+02 Score=24.43 Aligned_cols=53 Identities=23% Similarity=0.196 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchh---------------------------hhHHHHhccCCCCeeecc-----HHHHHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSH---------------------------IWHDEVCKGCSVPFLHVS-----ECVAKE 201 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH---------------------------~~~d~l~~~~~vPil~Ii-----d~t~~~ 201 (241)
+.+.++.|++.|||.|++ .||.- .+..++++.+++||+... +.+.+.
T Consensus 179 ~~~~a~~l~~~G~dgI~~-~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~ 257 (334)
T PRK07565 179 LANMAKRLDAAGADGLVL-FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKM 257 (334)
T ss_pred HHHHHHHHHHcCCCeEEE-ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHH
Confidence 345567899999999887 47741 112345566789998764 334455
Q ss_pred HHHhcCC
Q 026201 202 LKEANMK 208 (241)
Q Consensus 202 i~~~~~k 208 (241)
+. .|..
T Consensus 258 l~-aGA~ 263 (334)
T PRK07565 258 LL-AGAD 263 (334)
T ss_pred HH-cCCC
Confidence 53 5653
No 363
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=31.29 E-value=3.1e+02 Score=25.02 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCcEEEEeCCchh---------hhHHHHhccCCCCeeeccH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSH---------IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH---------~~~d~l~~~~~vPil~Iid 196 (241)
.+.++.|++.|+|.|.+-.-|.. .+..++++.+++||+...+
T Consensus 150 ~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 200 (319)
T TIGR00737 150 VEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGD 200 (319)
T ss_pred HHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCC
Confidence 34567899999999998654431 1236788889999987654
No 364
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=31.27 E-value=1.5e+02 Score=29.34 Aligned_cols=41 Identities=15% Similarity=0.335 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhh-HHHH---hccCCCCeeecc
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIW-HDEV---CKGCSVPFLHVS 195 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~-~d~l---~~~~~vPil~Ii 195 (241)
.+.+++|.+.|-+..+++|-|.-+. +++| .++++|||++..
T Consensus 118 ~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~ 162 (451)
T COG0541 118 GKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG 162 (451)
T ss_pred HHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCC
Confidence 3445789999999999999999986 4665 567899999873
No 365
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=31.20 E-value=64 Score=30.40 Aligned_cols=73 Identities=14% Similarity=0.076 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH-------HH--HHHHHhcCCCCCCCCCCEEEEEecH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VA--KELKEANMKPLEAGSPLRIGVLAKN 224 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~-------t~--~~i~~~~~k~~~~~~~~rVGLLaT~ 224 (241)
+.+.++.|... +|+||+=+. .|...+++.+..++||||..+. .+ -.+.+... ..++.+|+++|--
T Consensus 91 l~Dt~rvls~y-~D~iviR~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g----~l~g~~va~vGd~ 164 (331)
T PRK02102 91 IEDTARVLGRM-YDGIEYRGF-KQEIVEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKEHFG----PLKGLKLAYVGDG 164 (331)
T ss_pred HHHHHHHHhhc-CCEEEEECC-chHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhC----CCCCCEEEEECCC
Confidence 44455678888 999999965 5677899999999999997652 11 11333211 1245799999973
Q ss_pred --HHHhhhhH
Q 026201 225 --AILTAGFY 232 (241)
Q Consensus 225 --~T~~s~~Y 232 (241)
.|..|-++
T Consensus 165 ~~~v~~Sl~~ 174 (331)
T PRK02102 165 RNNMANSLMV 174 (331)
T ss_pred cccHHHHHHH
Confidence 56655444
No 366
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=31.19 E-value=2.3e+02 Score=25.48 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=20.6
Q ss_pred HHHHHHHhCCcEEEEeCCchh--------hhHHHHhccCCCCee
Q 026201 157 KRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFL 192 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH--------~~~d~l~~~~~vPil 192 (241)
.++..++.|||.+++.-...+ .++.+|.+.+++|++
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~ 131 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPII 131 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 345667778887766433221 134666666666654
No 367
>PRK13599 putative peroxiredoxin; Provisional
Probab=31.15 E-value=2.1e+02 Score=24.98 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCch--hh-hHHHHhc----cCCCCeeeccHHHHHHHHHhc
Q 026201 152 ENLRRKRVFLEKAGARCIVMPCHLS--HI-WHDEVCK----GCSVPFLHVSECVAKELKEAN 206 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvIaCNTA--H~-~~d~l~~----~~~vPil~Iid~t~~~i~~~~ 206 (241)
..+.+..+.+++.|+.+|.|.+++. |. |.+.+++ ..+.|++. |.-.+-++..|
T Consensus 49 ~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~--D~~~~va~~yg 108 (215)
T PRK13599 49 VEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIA--DDLGKVSNQLG 108 (215)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEE--CCCchHHHHcC
Confidence 3466677888999999999999996 53 5566765 23455554 44333334444
No 368
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=30.92 E-value=91 Score=23.36 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=15.9
Q ss_pred HHHHHhCCcEEEEeCCchhhh
Q 026201 159 VFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~ 179 (241)
+..+..++|+|||.......+
T Consensus 88 ~~a~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 88 RTAKERQADLIIMGWHGSTSL 108 (132)
T ss_pred HHHHhcCCCEEEEecCCCCCc
Confidence 455678999999998866543
No 369
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=30.89 E-value=3.5e+02 Score=23.40 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCcEEEEeCCchh--------hhHHHHhccCCCCeeeccH----HHHHHHHHhcCCCCCCCCCCEEEEEec
Q 026201 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVSE----CVAKELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH--------~~~d~l~~~~~vPil~Iid----~t~~~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
+.++.|++.|+|.|.+.--+.. ..+.++++.+++|++--.. .-++.+.+.|.. .| ++||
T Consensus 31 ~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~--------~v-~ig~ 101 (243)
T cd04731 31 ELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGAD--------KV-SINS 101 (243)
T ss_pred HHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCc--------eE-EECc
Confidence 4456789999996666544432 2457788888899874322 233444444443 44 6676
Q ss_pred HHHHhhhhHHHHHH
Q 026201 224 NAILTAGFYQEKLQ 237 (241)
Q Consensus 224 ~~T~~s~~Y~~~L~ 237 (241)
..--.-.++.+..+
T Consensus 102 ~~~~~p~~~~~i~~ 115 (243)
T cd04731 102 AAVENPELIREIAK 115 (243)
T ss_pred hhhhChHHHHHHHH
Confidence 55444445555444
No 370
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=30.86 E-value=75 Score=29.95 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH-------HHH--HHHHhcCCCCCCCCCCEEEEEec
Q 026201 153 NLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAK--ELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~-------t~~--~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
.+.+.++.|.+. +|+|++=+. .|...+++.+..++||||..+. .+. .+.+...+ ....++.+|+++|-
T Consensus 86 sl~Dtarvls~y-~D~iviR~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~-g~~l~glkv~~vGD 162 (338)
T PRK02255 86 SLEDTARVLSRL-VDIIMARVD-RHQTVVELAKYATVPVINGMSDYNHPTQELGDLFTMIEHLPE-GKKLEDCKVVFVGD 162 (338)
T ss_pred CHHHHHHHHHHh-CcEEEEecC-ChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCC-CCCCCCCEEEEECC
Confidence 355556788888 999998865 5667788998999999997552 111 12332100 00123569999996
No 371
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=30.74 E-value=3e+02 Score=24.83 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=18.0
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccC
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE 108 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d 108 (241)
+.++||++-. ..+-.|+..+.+...+.
T Consensus 23 ~~~~Igvv~~---~~~~~f~~~~~~gi~~~ 49 (330)
T PRK15395 23 ADTRIGVTIY---KYDDNFMSVVRKAIEKD 49 (330)
T ss_pred CCceEEEEEe---cCcchHHHHHHHHHHHH
Confidence 4578998852 23457888887777643
No 372
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=30.65 E-value=77 Score=30.32 Aligned_cols=54 Identities=11% Similarity=-0.062 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCC----cEEEEeCCchhhhHH------------HHhccC---------CCCee-----eccHHHHHHHHH
Q 026201 155 RRKRVFLEKAGA----RCIVMPCHLSHIWHD------------EVCKGC---------SVPFL-----HVSECVAKELKE 204 (241)
Q Consensus 155 ~~~~~~Le~~Ga----d~IvIaCNTAH~~~d------------~l~~~~---------~vPil-----~Iid~t~~~i~~ 204 (241)
.++.+|.++-|+ |+++++.=|+|-.|. +|++.+ ++|++ ++.+.-.+.+.+
T Consensus 191 eeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~ 270 (350)
T PRK09197 191 EDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVS 270 (350)
T ss_pred HHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHH
Confidence 345567788898 999999999997653 355555 67754 455666666666
Q ss_pred hcCC
Q 026201 205 ANMK 208 (241)
Q Consensus 205 ~~~k 208 (241)
.|+.
T Consensus 271 ~GI~ 274 (350)
T PRK09197 271 YGVV 274 (350)
T ss_pred CCCe
Confidence 6654
No 373
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=30.56 E-value=2e+02 Score=25.47 Aligned_cols=71 Identities=10% Similarity=-0.080 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhCCcEE
Q 026201 93 STLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAGARCI 169 (241)
Q Consensus 93 AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~Gad~I 169 (241)
-.-+|+..+.+...+. ....+++++.. .+.+.. .+.++.|...++|.|
T Consensus 8 ~~~~~~~~~~~~i~~~a~~~g~~v~~~~~~-------------------------~~~~~q----~~~i~~l~~~~vDgI 58 (302)
T TIGR02634 8 LRLERWQKDRDIFVAAAESLGAKVFVQSAN-------------------------GNEAKQ----ISQIENLIARGVDVL 58 (302)
T ss_pred cchhhHHHHHHHHHHHHHhcCCEEEEEeCC-------------------------CCHHHH----HHHHHHHHHcCCCEE
Confidence 3567888887777653 34566665411 111111 234456788899988
Q ss_pred EEeCCch---hhhHHHHhccCCCCeee
Q 026201 170 VMPCHLS---HIWHDEVCKGCSVPFLH 193 (241)
Q Consensus 170 vIaCNTA---H~~~d~l~~~~~vPil~ 193 (241)
++..... ...++++++ .++|++-
T Consensus 59 Ii~~~~~~~~~~~l~~~~~-~~iPvV~ 84 (302)
T TIGR02634 59 VIIPQNGQVLSNAVQEAKD-EGIKVVA 84 (302)
T ss_pred EEeCCChhHHHHHHHHHHH-CCCeEEE
Confidence 8765433 344555543 3455433
No 374
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=30.44 E-value=4.2e+02 Score=24.38 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
+.++.+.+.|+..|+|.+++. +.++.+.-+.|++.+
T Consensus 96 ~a~~~a~~~ga~vIaIT~~~~---L~~~a~~~~~~~i~i 131 (337)
T PRK08674 96 SAVEQALKRGAKIIAITSGGK---LKEMAKEHGLPVIIV 131 (337)
T ss_pred HHHHHHHHCCCeEEEECCCch---HHHHHHhcCCeEEEe
Confidence 344567788999999998863 444433334444443
No 375
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=30.38 E-value=1.7e+02 Score=24.95 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCchhh---hHHHHhcc--CCCCeeeccHHHHHHHHHhcC
Q 026201 151 VENLRRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKG--CSVPFLHVSECVAKELKEANM 207 (241)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~---~~d~l~~~--~~vPil~Iid~t~~~i~~~~~ 207 (241)
...+.+..+.+++.|+++|.+.++.... |.+.+++. .++|+--+.|...+-.+..|.
T Consensus 45 l~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~ 106 (203)
T cd03016 45 LGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM 106 (203)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence 3446677788899999999999998643 55555543 345444445665555555453
No 376
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=30.22 E-value=1.9e+02 Score=26.32 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=56.2
Q ss_pred HHHHhCCcEEEEeCCc------hhh-hHHHHhccCCCCeeeccH-----------------HHHHHHHHhcCCCCCCCCC
Q 026201 160 FLEKAGARCIVMPCHL------SHI-WHDEVCKGCSVPFLHVSE-----------------CVAKELKEANMKPLEAGSP 215 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNT------AH~-~~d~l~~~~~vPil~Iid-----------------~t~~~i~~~~~k~~~~~~~ 215 (241)
..++.|||-|=+|+|- .++ +..+..+..++|+.-|+. .-++.+++.|.+ +
T Consensus 16 ~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~------G 89 (241)
T COG3142 16 AAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQ------G 89 (241)
T ss_pred HHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCC------c
Confidence 4678999999999984 444 347777778899877754 345556677654 5
Q ss_pred CEEEEEecHHHHhhhhHHHHHHhc
Q 026201 216 LRIGVLAKNAILTAGFYQEKLQHE 239 (241)
Q Consensus 216 ~rVGLLaT~~T~~s~~Y~~~L~~~ 239 (241)
...|.|-+++++....-++.++..
T Consensus 90 VV~G~lt~dg~iD~~~le~Li~aA 113 (241)
T COG3142 90 VVLGALTADGNIDMPRLEKLIEAA 113 (241)
T ss_pred EEEeeecCCCccCHHHHHHHHHHc
Confidence 578999999999999888887765
No 377
>PLN02417 dihydrodipicolinate synthase
Probab=30.21 E-value=1.3e+02 Score=27.18 Aligned_cols=34 Identities=9% Similarity=-0.049 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 142 GVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 142 ~~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
+...|++.+.+.+ ++|.+.|++-|++...|--.+
T Consensus 16 ~g~iD~~~~~~~i----~~l~~~Gv~Gi~~~GstGE~~ 49 (280)
T PLN02417 16 DGRFDLEAYDSLV----NMQIENGAEGLIVGGTTGEGQ 49 (280)
T ss_pred CCCcCHHHHHHHH----HHHHHcCCCEEEECccCcchh
Confidence 4567887766544 688999999999999887665
No 378
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=30.17 E-value=1.2e+02 Score=30.76 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCcEEEEe-CCchhhhHHHHhccCCCC-eeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHH
Q 026201 156 RKRVFLEKAGARCIVMP-CHLSHIWHDEVCKGCSVP-FLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQ 233 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIa-CNTAH~~~d~l~~~~~vP-il~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~ 233 (241)
-.++.|.+.|+.-+||| --=..+..=++.+.-++- .+|+=|-.+.+.. .|+ ...+...|+|+.|.||-.+++|.
T Consensus 13 v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfA-LGl---AKas~rPVavi~TSGTA~ANl~P 88 (566)
T COG1165 13 VFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFA-LGL---AKASKRPVAVICTSGTAVANLYP 88 (566)
T ss_pred HHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHH-Hhh---hhhcCCCEEEEEcCcchhhhccH
Confidence 34578999999766664 333333322222222443 3454343433322 111 01234589999999999999999
Q ss_pred HHHHhc
Q 026201 234 EKLQHE 239 (241)
Q Consensus 234 ~~L~~~ 239 (241)
..+|++
T Consensus 89 AViEA~ 94 (566)
T COG1165 89 AVIEAN 94 (566)
T ss_pred HHHhhh
Confidence 988764
No 379
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=30.12 E-value=1e+02 Score=28.32 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 143 VQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 143 ~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
...|++.+. +.+++|.+.|+|-|++++.|--..
T Consensus 20 g~vD~~a~~----~lv~~li~~Gv~gi~~~GttGE~~ 52 (299)
T COG0329 20 GSVDEEALR----RLVEFLIAAGVDGLVVLGTTGESP 52 (299)
T ss_pred CCcCHHHHH----HHHHHHHHcCCCEEEECCCCccch
Confidence 445666654 455799999999999999997664
No 380
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=30.08 E-value=2.4e+02 Score=25.09 Aligned_cols=95 Identities=14% Similarity=0.116 Sum_probs=49.1
Q ss_pred cchhhccCCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHH-h-hhcCCChhhhhcccCCCCCCCHHH
Q 026201 73 SDALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKE-L-LSHDRSSFSSLNCKGGGVQLDDSL 149 (241)
Q Consensus 73 ~~~~~~~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~-l-l~~~~~~~~~~~~~~~~~~~d~~~ 149 (241)
...+|.+.+.|.|+| |.+...+.+|..++... ..+...+.+...... . ...+.|..-.. ...+....
T Consensus 133 ~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~-----g~~~~~~~d~~~~~~~~~~~~~~Dl~I~i-----S~sG~t~~ 202 (292)
T PRK11337 133 AARFFYQARQRDLYGAGGSAAIARDVQHKFLRI-----GVRCQAYDDAHIMLMSAALLQEGDVVLVV-----SHSGRTSD 202 (292)
T ss_pred HHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhC-----CCeEEEcCCHHHHHHHHhcCCCCCEEEEE-----eCCCCCHH
Confidence 455666789999997 65555555565665532 122233333322110 0 00112221111 01122223
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCchhhhHH
Q 026201 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIWHD 181 (241)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d 181 (241)
+.+.++...+.|+..|+|..|..+...+
T Consensus 203 ----~~~~~~~ak~~g~~ii~IT~~~~s~la~ 230 (292)
T PRK11337 203 ----VIEAVELAKKNGAKIICITNSYHSPIAK 230 (292)
T ss_pred ----HHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 3345567889999999999887766543
No 381
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=30.06 E-value=3e+02 Score=25.43 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=57.7
Q ss_pred CCeEEEE-eC-CChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201 80 ANTVGIV-GG-ASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (241)
Q Consensus 80 ~k~IGII-GG-mGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (241)
.|+-|.. .| -.-....++.+||.....++..++++|.-..+. ++ ....-+ +.+.+
T Consensus 115 pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa---~~----------------~~~g~d---eAI~R- 171 (290)
T TIGR02321 115 PKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEA---LI----------------AGLGQQ---EAVRR- 171 (290)
T ss_pred CcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEecc---cc----------------ccCCHH---HHHHH-
Confidence 4555554 23 122455688899987777654466776442211 00 000112 22333
Q ss_pred HHHHHHhCCcEEEEeC-CchhhhHHHHhccCC--CCeeeccH-----HHHHHHHHhc
Q 026201 158 RVFLEKAGARCIVMPC-HLSHIWHDEVCKGCS--VPFLHVSE-----CVAKELKEAN 206 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaC-NTAH~~~d~l~~~~~--vPil~Iid-----~t~~~i~~~~ 206 (241)
++...++|||+|.+++ .+.-....++.+.++ +|++ ++. .+.+.+.+.|
T Consensus 172 a~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~p~pv~-~~~~~~p~~~~~~l~~lg 227 (290)
T TIGR02321 172 GQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLV-LVPTAYPQLTEADIAALS 227 (290)
T ss_pred HHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCCCCCeE-EecCCCCCCCHHHHHHhc
Confidence 3556789999999997 455555666666665 5765 322 1345677765
No 382
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=30.03 E-value=2.5e+02 Score=25.23 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=0.0
Q ss_pred EEEEe--CCChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 83 VGIVG--GASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 83 IGIIG--GmGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
|-+.| |=++.=|.+=.+++++.+.+. +..+++.-- ...+.++.++..+
T Consensus 36 i~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv-------------------------~~~s~~~~i~~a~--- 87 (285)
T TIGR00674 36 IVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT-------------------------GSNATEEAISLTK--- 87 (285)
T ss_pred EEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeC-------------------------CCccHHHHHHHHH---
Q ss_pred HHHHHhCCcEEEEeCCchhh--------hHHHHhccCCCCee
Q 026201 159 VFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~~vPil 192 (241)
..++.|||.+++.-..... ++..|.+.+++||+
T Consensus 88 -~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~ 128 (285)
T TIGR00674 88 -FAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPII 128 (285)
T ss_pred -HHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEE
No 383
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=29.91 E-value=4.7e+02 Score=27.17 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCcEEEEeC--Cchh-----------hhHHHHhccCCCCeeeccH
Q 026201 156 RKRVFLEKAGARCIVMPC--HLSH-----------IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaC--NTAH-----------~~~d~l~~~~~vPil~Iid 196 (241)
+.++.|++.|+|+|-+-+ +... .+.+++++.+++|++...+
T Consensus 642 ~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~ 695 (765)
T PRK08255 642 EIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGA 695 (765)
T ss_pred HHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCC
Confidence 556789999999998853 2111 1346788888999887654
No 384
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=29.89 E-value=90 Score=26.85 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCc
Q 026201 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPCHL 175 (241)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNT 175 (241)
..|.+.-++.+.+.++...+.|||+||+|=-.
T Consensus 11 ~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~ 42 (254)
T cd07576 11 DGDVAANLARLDEAAARAAAAGADLLVFPELF 42 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEccCcc
Confidence 34666666667777777888999999988543
No 385
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=29.88 E-value=1.1e+02 Score=26.71 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
+.+..+.+++.|+++|+.--+..-...+.|.+..++|++.+
T Consensus 188 l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~l 228 (256)
T PF01297_consen 188 LAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYL 228 (256)
T ss_dssp HHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEES
T ss_pred HHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEe
Confidence 45556788999999999998888888899999999998764
No 386
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=29.77 E-value=78 Score=26.99 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=27.8
Q ss_pred HHHHHHHHhCC-cEEEEeCCch-------hhhHHHHhccCCCCee
Q 026201 156 RKRVFLEKAGA-RCIVMPCHLS-------HIWHDEVCKGCSVPFL 192 (241)
Q Consensus 156 ~~~~~Le~~Ga-d~IvIaCNTA-------H~~~d~l~~~~~vPil 192 (241)
+..+.+.+.+- +-|+|-+|++ +.-++.+++.++||++
T Consensus 66 ~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl 110 (168)
T PF09419_consen 66 EWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVL 110 (168)
T ss_pred HHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEE
Confidence 33455666655 5899999997 5557889999999975
No 387
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.61 E-value=96 Score=30.87 Aligned_cols=51 Identities=22% Similarity=0.130 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhh-------HHHHhccCC--CCeee--ccH-HHHHHHHHhcCC
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIW-------HDEVCKGCS--VPFLH--VSE-CVAKELKEANMK 208 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~-------~d~l~~~~~--vPil~--Iid-~t~~~i~~~~~k 208 (241)
+.++.|.++|+|+|++. ++|-+ .+++++.++ ++|+- ++. +.++.+.+.|.+
T Consensus 245 ~ra~~Lv~aGvd~i~vd--~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd 307 (502)
T PRK07107 245 ERVPALVEAGADVLCID--SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGAD 307 (502)
T ss_pred HHHHHHHHhCCCeEeec--CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCC
Confidence 45567999999999998 55543 466777664 55554 433 345666676654
No 388
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=29.55 E-value=2.7e+02 Score=24.64 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=23.6
Q ss_pred HHHhCCcEEEEeCCchhhh-HHHHhccCCCCeee
Q 026201 161 LEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLH 193 (241)
Q Consensus 161 Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~ 193 (241)
|...||.+|+=|.++.... ...+.+..++|+|.
T Consensus 59 li~~~V~aiiG~~~S~~~~av~~~~~~~~vP~Is 92 (327)
T cd06382 59 LLQQGVAAIFGPSSSEASSIVQSICDAKEIPHIQ 92 (327)
T ss_pred hhhcCcEEEECCCChhHHHHHHHHHhccCCCcee
Confidence 3344999999888777654 36677777888776
No 389
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.52 E-value=3.3e+02 Score=22.62 Aligned_cols=90 Identities=6% Similarity=0.004 Sum_probs=53.6
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
.++|.++||- ++......++|.+..+. +.++-..++-. + +.+ ..+.++
T Consensus 48 ~~~ifllG~~-~~~~~~~~~~l~~~yP~---l~ivg~~~g~f---------~------------~~~-------~~~i~~ 95 (172)
T PF03808_consen 48 GKRIFLLGGS-EEVLEKAAANLRRRYPG---LRIVGYHHGYF---------D------------EEE-------EEAIIN 95 (172)
T ss_pred CCeEEEEeCC-HHHHHHHHHHHHHHCCC---eEEEEecCCCC---------C------------hhh-------HHHHHH
Confidence 4689999765 56666666666555543 23333222211 0 011 223445
Q ss_pred HHHHhCCcEEEEeCCch--hhhHHHHhccCCCCeeeccHHHHHH
Q 026201 160 FLEKAGARCIVMPCHLS--HIWHDEVCKGCSVPFLHVSECVAKE 201 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTA--H~~~d~l~~~~~vPil~Iid~t~~~ 201 (241)
.+.+.++|+|+++-=+. ..|..+.++..+.+++--+-.+...
T Consensus 96 ~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i~vG~~~d~ 139 (172)
T PF03808_consen 96 RINASGPDIVFVGLGAPKQERWIARHRQRLPAGVIIGVGGAFDF 139 (172)
T ss_pred HHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECchhhh
Confidence 77899999988887766 6788999999888733323344433
No 390
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=29.51 E-value=2.5e+02 Score=21.27 Aligned_cols=77 Identities=10% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 80 ANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 80 ~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
+++|-++=|.|--++ -+.+++.+...++ .+++-+...+ +.+.-.
T Consensus 3 ~~~ILl~C~~G~sSS-~l~~k~~~~~~~~-gi~~~v~a~~----------------------------------~~~~~~ 46 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLVNKMNKAAEEY-GVPVKIAAGS----------------------------------YGAAGE 46 (95)
T ss_pred ccEEEEECCCchhHH-HHHHHHHHHHHHC-CCcEEEEEec----------------------------------HHHHHh
Confidence 456667766664444 5779998887665 4444443311 001101
Q ss_pred HHHHhCCcEEEEeCCchhhh--HHHHhccCCCCeeec
Q 026201 160 FLEKAGARCIVMPCHLSHIW--HDEVCKGCSVPFLHV 194 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~--~d~l~~~~~vPil~I 194 (241)
.. ..+|+|+++-..+|.+ +.++.+..++|+..|
T Consensus 47 ~~--~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 47 KL--DDADVVLLAPQVAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred hc--CCCCEEEECchHHHHHHHHHHHhhhcCCCEEEe
Confidence 12 3579999998888854 233444567898876
No 391
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=29.49 E-value=71 Score=30.45 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCc----hhhhHHHHhcc-----------CCCCeeeccH
Q 026201 153 NLRRKRVFLEKAGARCIVMPCHL----SHIWHDEVCKG-----------CSVPFLHVSE 196 (241)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvIaCNT----AH~~~d~l~~~-----------~~vPil~Iid 196 (241)
-+.+.++.|.+. +|+||+=..- -|.+.+++.+. .++||||..+
T Consensus 86 sl~Dtarvls~y-~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~~~~~~~~s~vPVINa~~ 143 (357)
T TIGR03316 86 TVRETAEMISFF-ADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQRPPLVNLQC 143 (357)
T ss_pred CHHHHHHHHHHh-CcEEEEeCCCccccccHHHHHHHHhhhhccccccccCCCCEEECCC
Confidence 355566788888 9999998642 46777788777 7899999875
No 392
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=29.46 E-value=1.3e+02 Score=27.02 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 142 GVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 142 ~~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
+...|++.+.+.+ ++|.+.|++-|++++.|.-.+
T Consensus 16 dg~iD~~~l~~~i----~~l~~~Gv~gi~~~Gs~GE~~ 49 (292)
T PRK03170 16 DGSVDFAALRKLV----DYLIANGTDGLVVVGTTGESP 49 (292)
T ss_pred CCCcCHHHHHHHH----HHHHHcCCCEEEECCcCCccc
Confidence 4567777765544 689999999999999886553
No 393
>PF08228 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR013241 This family of fungal proteins form a subunit of RNase P, the ribonucleoprotein enzyme that cleaves the leader sequence of precursor tRNAs to generate mature tRNAs. The structure of Pop3 has been assigned the L7Ae/L30e fold []. This RNA-binding fold is also present in human RNase P subunit Rpp38, raising the possibility that Pop3p and Rpp38 are functional homologues.
Probab=29.43 E-value=1.8e+02 Score=24.73 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCC-cEEEEeCCch--hhh---HHHHhccCC--CCeeeccHHHHHHHHHh-cCCCCCCCCCCEEEEEecH
Q 026201 154 LRRKRVFLEKAGA-RCIVMPCHLS--HIW---HDEVCKGCS--VPFLHVSECVAKELKEA-NMKPLEAGSPLRIGVLAKN 224 (241)
Q Consensus 154 l~~~~~~Le~~Ga-d~IvIaCNTA--H~~---~d~l~~~~~--vPil~Iid~t~~~i~~~-~~k~~~~~~~~rVGLLaT~ 224 (241)
+.+..+.||..+. +.+++.||.= ..+ +..+....+ +.+|.+.....+.+.+. |.. |+|+||-.
T Consensus 60 fNsi~~~Le~~~~~~~~vFVcr~D~ps~L~~h~P~Lva~as~~vrLV~Lpkgs~~rLs~aLgi~--------r~g~l~v~ 131 (158)
T PF08228_consen 60 FNSIVRYLECQASDNVYVFVCRSDQPSILTSHFPQLVATASKSVRLVQLPKGSEARLSEALGIP--------RVGILAVR 131 (158)
T ss_pred hHHHHHHHhcccCCCeEEEEECCCCcHHHHHHHHHHHHhccCcceEEeCChhHHHHHHHHhCCC--------CccEEEEe
Confidence 4455677885444 4788899876 223 344444444 99999988877777764 443 78887765
Q ss_pred HHH
Q 026201 225 AIL 227 (241)
Q Consensus 225 ~T~ 227 (241)
...
T Consensus 132 ~~~ 134 (158)
T PF08228_consen 132 ADA 134 (158)
T ss_pred cCC
Confidence 443
No 394
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=29.18 E-value=73 Score=30.04 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid 196 (241)
+.+.++.|.+. +|+||+=.+ .|....++.+..++||||..+
T Consensus 90 l~Dtarvls~y-~D~IviR~~-~~~~~~~~a~~~~vPVINa~~ 130 (338)
T PRK08192 90 LYDTARVLSTY-SDVIAMRHP-DAGSVKEFAEGSRVPVINGGD 130 (338)
T ss_pred HHHHHHHHHHc-CCEEEEeCC-chhHHHHHHHhCCCCEEECCC
Confidence 55566788888 999999865 455678888889999999876
No 395
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=29.17 E-value=3.6e+02 Score=22.87 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=11.1
Q ss_pred HHHHHhCCcEEEEeCC
Q 026201 159 VFLEKAGARCIVMPCH 174 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCN 174 (241)
+.+...++|.|++...
T Consensus 50 ~~~~~~~vdgiii~~~ 65 (270)
T cd06308 50 ENFIRQGVDLLIISPN 65 (270)
T ss_pred HHHHHhCCCEEEEecC
Confidence 4456779998877543
No 396
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=29.17 E-value=81 Score=29.75 Aligned_cols=74 Identities=14% Similarity=0.085 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH-------HHH--HHHHh-cCCCCCCCCCCEEEEEec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAK--ELKEA-NMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~-------t~~--~i~~~-~~k~~~~~~~~rVGLLaT 223 (241)
+.+.++.|.+. +|+||+=+. .|....++.+..++||||..+. .+. .+.+. |.+ ...+.+|+++|-
T Consensus 90 l~Dtarvls~y-~D~iviR~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~---~l~gl~va~vGD 164 (334)
T PRK12562 90 IKDTARVLGRM-YDGIQYRGH-GQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGK---AFNEMTLVYAGD 164 (334)
T ss_pred HHHHHHHHHHh-CCEEEEECC-chHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhCCC---CcCCcEEEEECC
Confidence 45566788888 999999975 5667888999999999997542 111 13332 111 113569999985
Q ss_pred --HHHHhhhhH
Q 026201 224 --NAILTAGFY 232 (241)
Q Consensus 224 --~~T~~s~~Y 232 (241)
..+..|-++
T Consensus 165 ~~~~v~~S~~~ 175 (334)
T PRK12562 165 ARNNMGNSMLE 175 (334)
T ss_pred CCCCHHHHHHH
Confidence 245555443
No 397
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=29.17 E-value=53 Score=24.03 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCcEEEEeC---CchhhhHHHHhccCCCCeeeccHHHHHHHHH
Q 026201 155 RRKRVFLEKAGARCIVMPC---HLSHIWHDEVCKGCSVPFLHVSECVAKELKE 204 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaC---NTAH~~~d~l~~~~~vPil~Iid~t~~~i~~ 204 (241)
.+.++..+++||..++|.- +.............++|.+.|-....+.|++
T Consensus 47 ~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~ 99 (101)
T PF02225_consen 47 DDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLA 99 (101)
T ss_dssp HHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhc
Confidence 3445677899999999887 1111111223335679999998888888765
No 398
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=29.16 E-value=2.8e+02 Score=26.70 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhh---hHHHHhccCCCCeeecc
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHI---WHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~---~~d~l~~~~~vPil~Ii 195 (241)
.+.++.+.+.+||.|++..-|... +...++ ..++|++...
T Consensus 53 ~~~~~~~~~~~~d~ii~~~~tf~~~~~~~~~~~-~~~~Pvll~a 95 (452)
T cd00578 53 RKAAEEFNEANCDGLIVWMHTFGPAKMWIAGLS-ELRKPVLLLA 95 (452)
T ss_pred HHHHHHHhhcCCcEEEEcccccccHHHHHHHHH-hcCCCEEEEe
Confidence 345567777899999998877665 344443 4577876553
No 399
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=29.14 E-value=1.1e+02 Score=27.96 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 142 GVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 142 ~~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
+...|.+.+.. .+++|.+.|++-|++...|.-.+
T Consensus 22 dg~iD~~~l~~----li~~l~~~Gv~Gi~~~GstGE~~ 55 (303)
T PRK03620 22 DGSFDEAAYRE----HLEWLAPYGAAALFAAGGTGEFF 55 (303)
T ss_pred CCCcCHHHHHH----HHHHHHHcCCCEEEECcCCcCcc
Confidence 45567666554 44689999999999999887654
No 400
>PRK06847 hypothetical protein; Provisional
Probab=29.01 E-value=40 Score=30.70 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=20.2
Q ss_pred hccCCeEEEEe-CCChHHHHHHHHHH
Q 026201 77 LNQANTVGIVG-GASVDSTLNLLGKL 101 (241)
Q Consensus 77 ~~~~k~IGIIG-GmGp~AT~~fy~kI 101 (241)
|++++.|.||| |.+..+++..+++.
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~ 26 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRA 26 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhC
Confidence 55678899998 88889888887663
No 401
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=28.99 E-value=1.3e+02 Score=28.07 Aligned_cols=44 Identities=7% Similarity=-0.036 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchh---------------h--hHHHHhccC-CCCeeeccHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSH---------------I--WHDEVCKGC-SVPFLHVSEC 197 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH---------------~--~~d~l~~~~-~vPil~Iid~ 197 (241)
+.+.++.|+++||++|.+-+=|.. . +..++++.+ ++||+.-.+.
T Consensus 143 ~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI 204 (318)
T TIGR00742 143 LCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGI 204 (318)
T ss_pred HHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCc
Confidence 445667899999999999998851 1 235677766 7999876553
No 402
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.98 E-value=2.6e+02 Score=25.64 Aligned_cols=102 Identities=10% Similarity=0.076 Sum_probs=50.1
Q ss_pred cCCeEEEEe-CCChHHHHHHHHHHHHHhccC---CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHH
Q 026201 79 QANTVGIVG-GASVDSTLNLLGKLVQLSGEE---NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL 154 (241)
Q Consensus 79 ~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d---~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l 154 (241)
++++|+|++ |-|. -++.|.+..... ..+.+|+.+.+.+.......+. |...... ...+.++ .-
T Consensus 88 ~~~ri~vl~Sg~gs-----nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gI-p~~~~~~----~~~~~~~---~~ 154 (286)
T PRK06027 88 ERKRVVILVSKEDH-----CLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGI-PFHHVPV----TKETKAE---AE 154 (286)
T ss_pred cCcEEEEEEcCCCC-----CHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCC-CEEEecc----Cccccch---hH
Confidence 466899996 5543 356666666543 4566777666655432111111 1111000 0011111 11
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
.+..+.|++.++|+||++-- ....-+.+-+.++-.++||
T Consensus 155 ~~~~~~l~~~~~Dlivlagy-~~il~~~~l~~~~~~iiNi 193 (286)
T PRK06027 155 ARLLELIDEYQPDLVVLARY-MQILSPDFVARFPGRIINI 193 (286)
T ss_pred HHHHHHHHHhCCCEEEEecc-hhhcCHHHHhhccCCceec
Confidence 12346788999999999842 2222244444444445554
No 403
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=28.94 E-value=2.7e+02 Score=25.95 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCCchhh--------hHHHHhccCCCCeeec------------cHHHHHHHHHhc
Q 026201 147 DSLIVENLRRKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFLHV------------SECVAKELKEAN 206 (241)
Q Consensus 147 ~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~~vPil~I------------id~t~~~i~~~~ 206 (241)
.+++.+.+.++. ++...++|++...-.+. +.+++++..+.|++.+ .+.+.+.+.+.-
T Consensus 59 ~~kL~~~i~~~~---~~~~P~~i~v~~sC~~~iIGdD~~~v~~~~~~~~~~~vi~v~~~gf~~~~~~G~~~a~~~l~~~~ 135 (398)
T PF00148_consen 59 EEKLREAIKEIA---EKYKPKAIFVVTSCVPEIIGDDIEAVARELQEEYGIPVIPVHTPGFSGSYSQGYDAALRALAEQL 135 (398)
T ss_dssp HHHHHHHHHHHH---HHHSTSEEEEEE-HHHHHTTTTHHHHHHHHHHHHSSEEEEEE--TTSSSHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH---hcCCCcEEEEECCCCHHHhCCCHHHHHHHhhcccCCcEEEEECCCccCCccchHHHHHHHHHhhc
Confidence 355655555443 34567876665443333 3466777777777765 233444444432
Q ss_pred CCCCCCCCCCEEEEEecH-HH-HhhhhHHHHHHhcCC
Q 026201 207 MKPLEAGSPLRIGVLAKN-AI-LTAGFYQEKLQHEDC 241 (241)
Q Consensus 207 ~k~~~~~~~~rVGLLaT~-~T-~~s~~Y~~~L~~~G~ 241 (241)
.++-....++.|-|+|.. .+ -...-.++.|++.|+
T Consensus 136 ~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi 172 (398)
T PF00148_consen 136 VKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGI 172 (398)
T ss_dssp TTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTE
T ss_pred ccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCC
Confidence 222233456689999864 22 244456677777664
No 404
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=28.82 E-value=2.7e+02 Score=25.05 Aligned_cols=72 Identities=13% Similarity=-0.003 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCch-hh---hHHHHhccCCCCeeeccH-----------H---HHHHHHHhcCCCCCCCCCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLS-HI---WHDEVCKGCSVPFLHVSE-----------C---VAKELKEANMKPLEAGSPL 216 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTA-H~---~~d~l~~~~~vPil~Iid-----------~---t~~~i~~~~~k~~~~~~~~ 216 (241)
.++++.|++.|.|+.....-.. |- -+..+....++|+|.|.- . ..+++.+. ++- ...+.+
T Consensus 94 ~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~~~~~lG~al~~~-i~~-~~~~d~ 171 (268)
T cd07367 94 RAFVRQAAEDGFDLAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPRRCWALGKVLAQY-VEK-RRPAGE 171 (268)
T ss_pred HHHHHHHHHcCCCeeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHH-HHh-cCCCCC
Confidence 3445788999999876653211 32 135566667888877621 1 22333332 000 000345
Q ss_pred EEEEEecHHHHh
Q 026201 217 RIGVLAKNAILT 228 (241)
Q Consensus 217 rVGLLaT~~T~~ 228 (241)
||+|+||-+.-.
T Consensus 172 rV~iiaSGgLSH 183 (268)
T cd07367 172 RVAVIAAGGLSH 183 (268)
T ss_pred cEEEEEcccccC
Confidence 999999977543
No 405
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=28.82 E-value=1.4e+02 Score=25.62 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=39.5
Q ss_pred HHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHh
Q 026201 159 VFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQH 238 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~ 238 (241)
..|.+.|+++++--=...-.|-..-.+.+. +.++-| ++++. -|-+|.++-+.+..+|++.++.
T Consensus 21 lNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~--v~~~~e----Av~~a-----------DvV~~L~PD~~q~~vy~~~I~p 83 (165)
T PF07991_consen 21 LNLRDSGVNVIVGLREGSASWEKAKADGFE--VMSVAE----AVKKA-----------DVVMLLLPDEVQPEVYEEEIAP 83 (165)
T ss_dssp HHHHHCC-EEEEEE-TTCHHHHHHHHTT-E--CCEHHH----HHHC------------SEEEE-S-HHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEecCCCcCHHHHHHCCCe--eccHHH----HHhhC-----------CEEEEeCChHHHHHHHHHHHHh
Confidence 568999999887765555566555555554 344333 33333 5889999999999999888764
No 406
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=28.79 E-value=2.5e+02 Score=25.56 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhCCcEEEE
Q 026201 154 LRRKRVFLEKAGARCIVM 171 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvI 171 (241)
+.+.++.+++.|||.|++
T Consensus 182 ~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 182 IREIARAAKEGGADGVSA 199 (299)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 345567789999999875
No 407
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=28.63 E-value=1.6e+02 Score=26.70 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=44.5
Q ss_pred hhhccCCeEEEEe---CCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHH
Q 026201 75 ALLNQANTVGIVG---GASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLI 150 (241)
Q Consensus 75 ~~~~~~k~IGIIG---GmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i 150 (241)
-+|+..+.+|.+| |+-......|..-.....+.- ..+.+...- + ..-.|.+.
T Consensus 121 a~~tkt~~vg~ig~i~G~~~p~~~~~~~gF~~Ga~~~np~i~v~~~~-------~----------------gs~~D~~~- 176 (306)
T PF02608_consen 121 ALMTKTGKVGFIGDIGGMDIPPVNRFINGFIAGAKYVNPDIKVNVSY-------T----------------GSFNDPAK- 176 (306)
T ss_dssp HHHHSSTEEEEEEEEES--SCTTHHHHHHHHHHHHHTTTT-EEEEEE------------------------SSSS-HHH-
T ss_pred HHHhccCcccccccccCCCcHhHHHHHHHHHHHHHHhCcCceEEEEE-------c----------------CCcCchHH-
Confidence 4455678999999 997777777766655555433 222222211 0 01112222
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCchhhh-HHHH
Q 026201 151 VENLRRKRVFLEKAGARCIVMPCHLSHIW-HDEV 183 (241)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~~-~d~l 183 (241)
-.+.++.|-..|||+|.-.+..+..- ++..
T Consensus 177 ---~~~~a~~li~~GaDvI~~~ag~~~~gv~~aa 207 (306)
T PF02608_consen 177 ---AKEAAEALIDQGADVIFPVAGGSGQGVIQAA 207 (306)
T ss_dssp ---HHHHHHHHHHTT-SEEEEE-CCCHHHHHHHH
T ss_pred ---HHHHHHHHhhcCCeEEEECCCCCchHHHHHH
Confidence 24455678889999999988887753 3443
No 408
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=28.61 E-value=54 Score=28.93 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchh--------hhHHHHhccCCCCeeecc
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH--------~~~d~l~~~~~vPil~Ii 195 (241)
+.+.++.|++.||+.+++-.-|.. .++.++.+.+++|++-=.
T Consensus 148 ~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasG 197 (241)
T PRK14024 148 LWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASG 197 (241)
T ss_pred HHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeC
Confidence 345567899999999999888763 456888888899988543
No 409
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=28.53 E-value=1.5e+02 Score=24.46 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=31.8
Q ss_pred HHHHHHhCCc-EEEEeCCchhhhHHHHhccCCCCeeeccHHHHHH
Q 026201 158 RVFLEKAGAR-CIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKE 201 (241)
Q Consensus 158 ~~~Le~~Gad-~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~ 201 (241)
++.|++.|++ +..+|....-.+++.+.+..++.++....+....
T Consensus 4 ~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~ 48 (162)
T cd07038 4 LERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAG 48 (162)
T ss_pred HHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHH
Confidence 4679999998 6667777666778898665568777776664433
No 410
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=28.40 E-value=1.5e+02 Score=24.97 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=20.1
Q ss_pred CCeEEEEe--CCChHHHHHHHHHHHHHhccC
Q 026201 80 ANTVGIVG--GASVDSTLNLLGKLVQLSGEE 108 (241)
Q Consensus 80 ~k~IGIIG--GmGp~AT~~fy~kI~~~t~~d 108 (241)
|+.|||+| +.|=- -+.++|++...++
T Consensus 2 ~~Il~ivG~k~SGKT---TLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKT---TLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChh---hHHHHHHHHHHhC
Confidence 78999998 66643 5678888888776
No 411
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=28.31 E-value=78 Score=25.11 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhHHHH-------hccCCCCeeeccHHHHHHHHHh
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWHDEV-------CKGCSVPFLHVSECVAKELKEA 205 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l-------~~~~~vPil~Iid~t~~~i~~~ 205 (241)
+++...+++||..++|.-|........+ .....||.+.|-....+.+++.
T Consensus 49 ~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~L~~~ 105 (118)
T cd02127 49 TKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKT 105 (118)
T ss_pred HHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHHHHHH
Confidence 3456689999999999877654211111 2235689999988888888765
No 412
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=28.30 E-value=51 Score=31.40 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhH
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWH 180 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~ 180 (241)
.++.+|.++-|||+++++-=|+|-.|
T Consensus 176 eeA~~Fv~~TgvD~LAvaiGt~HG~Y 201 (347)
T PRK13399 176 DQAVDFVQRTGVDALAIAIGTSHGAY 201 (347)
T ss_pred HHHHHHHHHHCcCEEhhhhccccCCc
Confidence 45567888899999999999999654
No 413
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=28.30 E-value=91 Score=23.61 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcE--EEEeCCchhhhHHHHhccCCCCeeecc
Q 026201 146 DDSLIVENLRRKRVFLEKAGARC--IVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~--IvIaCNTAH~~~d~l~~~~~vPil~Ii 195 (241)
+|+.+.+.....++.|.+.+.+. |+-+-.-.-.+...+...+++|.....
T Consensus 6 ~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~ 57 (125)
T PF00156_consen 6 SPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVR 57 (125)
T ss_dssp BHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCcccee
Confidence 57777888888888999999875 444444455566888888777766543
No 414
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=28.19 E-value=3.5e+02 Score=25.71 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeee
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLH 193 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~ 193 (241)
.+.++..++.|+|++++.-++.... .+++++..++||..
T Consensus 213 i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~~~lpi~~ 252 (367)
T cd08205 213 RRRADRAVEAGANALLINPNLVGLDALRALAEDPDLPIMA 252 (367)
T ss_pred HHHHHHHHHcCCCEEEEecccccccHHHHHHhcCCCeEEE
Confidence 3445677899999999998877643 46666666776654
No 415
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=28.18 E-value=1.1e+02 Score=31.93 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.4
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh--HHHHhcc-----CCCCee
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKG-----CSVPFL 192 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~-----~~vPil 192 (241)
-+..|+++|||.|=+++++.-.. +..|++. +++|++
T Consensus 115 Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLV 157 (733)
T PLN02925 115 QVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLV 157 (733)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEE
Confidence 34679999999999999998875 4777764 889986
No 416
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=28.16 E-value=3.2e+02 Score=23.35 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc--------------HHHHHHHHHhcCC
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS--------------ECVAKELKEANMK 208 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii--------------d~t~~~i~~~~~k 208 (241)
+.+.++..+++|+..+-+. + -..++++++.+++||+.|. ..-++.+.+.|.+
T Consensus 25 ~~~~a~a~~~~G~~~~~~~--~-~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad 90 (221)
T PRK01130 25 MAAMALAAVQGGAVGIRAN--G-VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGAD 90 (221)
T ss_pred HHHHHHHHHHCCCeEEEcC--C-HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCC
Confidence 4455677899999887763 3 2345788888899997331 2235667777764
No 417
>PRK15482 transcriptional regulator MurR; Provisional
Probab=28.13 E-value=3.9e+02 Score=23.77 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=50.5
Q ss_pred cchhhccCCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhh--cCCChhhhhcccCCCCCCCHHH
Q 026201 73 SDALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLS--HDRSSFSSLNCKGGGVQLDDSL 149 (241)
Q Consensus 73 ~~~~~~~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~--~~~~~~~~~~~~~~~~~~d~~~ 149 (241)
...+|.+.++|=|+| |-+...+.++..++...-. ++....+++....... .+.|-+-.. ...+.-.+
T Consensus 128 ~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~-----~~~~~~d~~~~~~~~~~~~~~Dv~i~i-----S~sg~t~~ 197 (285)
T PRK15482 128 IIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGY-----RVACEADTHVQATVSQALKKGDVQIAI-----SYSGSKKE 197 (285)
T ss_pred HHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCC-----eeEEeccHhHHHHHHhcCCCCCEEEEE-----eCCCCCHH
Confidence 455677789999998 7666666677776654321 1222222222111110 011211111 01222233
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCchhhhH
Q 026201 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIWH 180 (241)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~ 180 (241)
+ .+.++...+.|+..|+|.++...+..
T Consensus 198 ~----~~~~~~a~~~g~~iI~IT~~~~s~la 224 (285)
T PRK15482 198 I----VLCAEAARKQGATVIAITSLADSPLR 224 (285)
T ss_pred H----HHHHHHHHHCCCEEEEEeCCCCCchH
Confidence 3 34556788999999999999877654
No 418
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.09 E-value=2e+02 Score=25.32 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=63.3
Q ss_pred hhccCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHH
Q 026201 76 LLNQANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLR 155 (241)
Q Consensus 76 ~~~~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~ 155 (241)
.+.+.+.|.|+=|..++-.+...+.+.+.-= +.+++-+ +.|.-.+.|..-... ++- .......-.+.
T Consensus 11 ~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi--~~iEitl-~~~~~~~~I~~l~~~-~p~-~~IGAGTVl~~-------- 77 (212)
T PRK05718 11 ILRAGPVVPVIVINKLEDAVPLAKALVAGGL--PVLEVTL-RTPAALEAIRLIAKE-VPE-ALIGAGTVLNP-------- 77 (212)
T ss_pred HHHHCCEEEEEEcCCHHHHHHHHHHHHHcCC--CEEEEec-CCccHHHHHHHHHHH-CCC-CEEEEeeccCH--------
Confidence 4456789999999999977777777665411 3344442 333322211100000 000 00011111111
Q ss_pred HHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCee-eccHHH-HHHHHHhcCC
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFL-HVSECV-AKELKEANMK 208 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil-~Iid~t-~~~i~~~~~k 208 (241)
+.++...++||+||+.|+-.. ...+.-+ ..++|++ ++..++ +..+.+.|.+
T Consensus 78 ~~a~~a~~aGA~FivsP~~~~-~vi~~a~-~~~i~~iPG~~TptEi~~a~~~Ga~ 130 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSPGLTP-PLLKAAQ-EGPIPLIPGVSTPSELMLGMELGLR 130 (212)
T ss_pred HHHHHHHHcCCCEEECCCCCH-HHHHHHH-HcCCCEeCCCCCHHHHHHHHHCCCC
Confidence 334567789999999997444 5444433 4788888 777554 4445566654
No 419
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=28.08 E-value=1e+02 Score=26.25 Aligned_cols=30 Identities=23% Similarity=0.083 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEeCC
Q 026201 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCH 174 (241)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvIaCN 174 (241)
.+.++.++.+.+.++...+.|+|+||+|=-
T Consensus 11 ~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~ 40 (253)
T cd07197 11 GDVEANLAKALRLIKEAAEQGADLIVLPEL 40 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEcCCc
Confidence 466666777777777888899999999853
No 420
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=28.02 E-value=3.9e+02 Score=22.97 Aligned_cols=15 Identities=0% Similarity=-0.079 Sum_probs=11.5
Q ss_pred HHHHHHhCCcEEEEe
Q 026201 158 RVFLEKAGARCIVMP 172 (241)
Q Consensus 158 ~~~Le~~Gad~IvIa 172 (241)
++.|...++|.|++.
T Consensus 53 i~~l~~~~vDgiIv~ 67 (280)
T cd06303 53 LNEALQSKPDYLIFT 67 (280)
T ss_pred HHHHHHcCCCEEEEc
Confidence 456778899988875
No 421
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=27.89 E-value=1e+02 Score=28.51 Aligned_cols=38 Identities=11% Similarity=-0.014 Sum_probs=24.2
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHHhc--cCCCCeeec
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCK--GCSVPFLHV 194 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~--~~~vPil~I 194 (241)
.++.|..+|+|.|++..+.....-+.+++ ..++|++.+
T Consensus 72 ~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 72 LINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEe
Confidence 44567889999999988776644333332 225665553
No 422
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=27.87 E-value=3.1e+02 Score=21.79 Aligned_cols=93 Identities=9% Similarity=0.045 Sum_probs=52.7
Q ss_pred eCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHh--
Q 026201 87 GGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKA-- 164 (241)
Q Consensus 87 GGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~-- 164 (241)
-|.+...|.++++.+...... ..+.+|+..- +..|.. ...+.+...+.+++.++.+.+.
T Consensus 29 ~g~~G~t~~~~~~~~~~~~~~-~~pd~v~i~~---------G~ND~~---------~~~~~~~~~~~~~~l~~~~~~~~p 89 (174)
T cd01841 29 LGIAGISSRQYLEHIEPQLIQ-KNPSKVFLFL---------GTNDIG---------KEVSSNQFIKWYRDIIEQIREEFP 89 (174)
T ss_pred cccccccHHHHHHHHHHHHHh-cCCCEEEEEe---------ccccCC---------CCCCHHHHHHHHHHHHHHHHHHCC
Confidence 377777788888877444433 3566666551 111211 1124566777788788887765
Q ss_pred CCcEEEE---eCCchh-------h-------hHHHHhccCCCCeeeccHHH
Q 026201 165 GARCIVM---PCHLSH-------I-------WHDEVCKGCSVPFLHVSECV 198 (241)
Q Consensus 165 Gad~IvI---aCNTAH-------~-------~~d~l~~~~~vPil~Iid~t 198 (241)
++.++++ |++... . ++.++.+..+++++++-+..
T Consensus 90 ~~~vi~~~~~p~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~~~~ 140 (174)
T cd01841 90 NTKIYLLSVLPVLEEDEIKTRSNTRIQRLNDAIKELAPELGVTFIDLNDVL 140 (174)
T ss_pred CCEEEEEeeCCcCcccccccCCHHHHHHHHHHHHHHHHHCCCEEEEcHHHH
Confidence 5666654 343311 1 22345556678888875543
No 423
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=27.78 E-value=1.2e+02 Score=25.98 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCc--------hhhhHHHHhc--cCCCCeeeccH-------HHHHHHHHh
Q 026201 153 NLRRKRVFLEKAGARCIVMPCHL--------SHIWHDEVCK--GCSVPFLHVSE-------CVAKELKEA 205 (241)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvIaCNT--------AH~~~d~l~~--~~~vPil~Iid-------~t~~~i~~~ 205 (241)
.|.+..+.+...|..++.+|||- .....+.+++ ....|++.-+| ++-+.+++.
T Consensus 45 ~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~ 114 (183)
T PRK10606 45 QLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAA 114 (183)
T ss_pred HHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccCCCCCCHHHHHHHHh
Confidence 45555667788899999999984 2233344432 35678875554 467778764
No 424
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=27.60 E-value=84 Score=29.65 Aligned_cols=74 Identities=11% Similarity=0.032 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH-------HH--HHHHHhcCCCCCCCCCCEEEEEec-
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VA--KELKEANMKPLEAGSPLRIGVLAK- 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~-------t~--~~i~~~~~k~~~~~~~~rVGLLaT- 223 (241)
+.+.++.|.+. +|+|++=++ .|....++.+..++||||..+. .+ -.+++... ....++.+|+++|-
T Consensus 90 l~Dtarvls~y-~D~Iv~R~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g--~~~l~g~~ia~vGD~ 165 (336)
T PRK03515 90 IKDTARVLGRM-YDGIQYRGY-GQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLP--GKAFNEMTLAYAGDA 165 (336)
T ss_pred HHHHHHHHHHh-CcEEEEEeC-ChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhC--CCCcCCCEEEEeCCC
Confidence 44555788888 999999965 4777888999999999997542 11 11333210 00123569999995
Q ss_pred -HHHHhhhh
Q 026201 224 -NAILTAGF 231 (241)
Q Consensus 224 -~~T~~s~~ 231 (241)
..|..|-.
T Consensus 166 ~~~v~~Sl~ 174 (336)
T PRK03515 166 RNNMGNSLL 174 (336)
T ss_pred cCcHHHHHH
Confidence 24555433
No 425
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=27.48 E-value=1.4e+02 Score=24.89 Aligned_cols=45 Identities=11% Similarity=-0.023 Sum_probs=31.3
Q ss_pred HHHHHHHhCCcE-EEEeCCchhhhHHHHhccCCCCeeeccHHHHHH
Q 026201 157 KRVFLEKAGARC-IVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKE 201 (241)
Q Consensus 157 ~~~~Le~~Gad~-IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~ 201 (241)
.++.|++.|++. +-+|-.....+++.+.+.-++.++..-.+....
T Consensus 3 l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~ 48 (162)
T cd07037 3 LVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAA 48 (162)
T ss_pred HHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHH
Confidence 346899999984 556666666778888655567777776665444
No 426
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=27.15 E-value=1.3e+02 Score=22.56 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=33.4
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHHh---ccCCCCeeeccHHHHHHHHHh
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEVC---KGCSVPFLHVSECVAKELKEA 205 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~---~~~~vPil~Iid~t~~~i~~~ 205 (241)
..+.+++..+.+++||.|......+.+. +..+||++.+. +-+++-.+
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~--t~~eLG~A 65 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYID--TMKELGVM 65 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeC--CHHHHHHH
Confidence 3456778889999999999987766654 55789996543 44555443
No 427
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=27.15 E-value=95 Score=28.93 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhcc-CCCCeeeccHH--------HHH--HHHHhcCCCCCCCCCCEEEEEe
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKG-CSVPFLHVSEC--------VAK--ELKEANMKPLEAGSPLRIGVLA 222 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~-~~vPil~Iid~--------t~~--~i~~~~~k~~~~~~~~rVGLLa 222 (241)
+.+.++-|.+.++|+||+=+. .|...+++.+. .++|+|+..+. .+. .+++... ..++.+|+++|
T Consensus 90 l~Dtarvls~y~~D~iv~R~~-~~~~~~~~a~~~~~vPvINag~g~~~HPtQaLaDl~Ti~e~~g----~l~g~~va~vG 164 (310)
T PRK13814 90 LFDTIKTLEAMGVYFFIVRHS-ENETPEQIAKQLSSGVVINAGDGNHQHPSQALIDLMTIKQHKP----HWNKLCVTIIG 164 (310)
T ss_pred HHHHHHHHHHhCCCEEEEeCC-chhHHHHHHHhCCCCCeEECCcCCCCCchHHHHHHHHHHHHhC----CcCCcEEEEEC
Confidence 455667899999999998865 55566777666 57999998541 111 1333211 12356999998
Q ss_pred c---HHHHhhhh
Q 026201 223 K---NAILTAGF 231 (241)
Q Consensus 223 T---~~T~~s~~ 231 (241)
= ..|..|-.
T Consensus 165 D~~~~rv~~Sl~ 176 (310)
T PRK13814 165 DIRHSRVANSLM 176 (310)
T ss_pred CCCCCcHHHHHH
Confidence 5 35555544
No 428
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=27.10 E-value=2.8e+02 Score=24.71 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=42.3
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
..|+||||-.-+...+...++.+.+..++. .+.++.+..+. ..+|+ +.+
T Consensus 130 ~~k~igvl~~~~~~~~~~~~~~~~~~a~~~-g~~l~~~~v~~-----------------------~~~~~-------~~~ 178 (294)
T PF04392_consen 130 DAKRIGVLYDPSEPNSVAQIEQLRKAAKKL-GIELVEIPVPS-----------------------SEDLE-------QAL 178 (294)
T ss_dssp T--EEEEEEETT-HHHHHHHHHHHHHHHHT-T-EEEEEEESS-----------------------GGGHH-------HHH
T ss_pred CCCEEEEEecCCCccHHHHHHHHHHHHHHc-CCEEEEEecCc-----------------------HhHHH-------HHH
Confidence 368999987766655666677766665443 34444433111 11222 222
Q ss_pred HHHHHhCCcEEEEeC-CchhhhHHHH---hccCCCCeeeccHHHH
Q 026201 159 VFLEKAGARCIVMPC-HLSHIWHDEV---CKGCSVPFLHVSECVA 199 (241)
Q Consensus 159 ~~Le~~Gad~IvIaC-NTAH~~~d~l---~~~~~vPil~Iid~t~ 199 (241)
+.|. ..+|++++++ ++...-.+.+ ....++|++..-+..+
T Consensus 179 ~~l~-~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~~~~v 222 (294)
T PF04392_consen 179 EALA-EKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSSDFYV 222 (294)
T ss_dssp HHHC-TT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESSHHHH
T ss_pred HHhh-ccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECCHHHh
Confidence 3443 3567776665 3333333333 3456899999765443
No 429
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.07 E-value=4.7e+02 Score=23.58 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=14.6
Q ss_pred HHHHHHHhCCcEEEEeCCc
Q 026201 157 KRVFLEKAGARCIVMPCHL 175 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNT 175 (241)
-++.+.++|+|-+++|=-.
T Consensus 109 f~~~~~~aGvdGviipDLp 127 (258)
T PRK13111 109 FAADAAEAGVDGLIIPDLP 127 (258)
T ss_pred HHHHHHHcCCcEEEECCCC
Confidence 3467889999999998543
No 430
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=27.01 E-value=1.2e+02 Score=24.05 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEEeC
Q 026201 144 QLDDSLIVENLRRKRVFLEKAGARCIVMPC 173 (241)
Q Consensus 144 ~~d~~~i~~~l~~~~~~Le~~Gad~IvIaC 173 (241)
..|.++....|-...+.|++.|+|.|++.+
T Consensus 77 ~~d~~~~A~~Lf~~LR~~D~~~~~~I~ie~ 106 (125)
T PF03481_consen 77 PGDPEEAARNLFAALRELDELGVDLILIEG 106 (125)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCEEEEee
Confidence 456667777787888899999999999985
No 431
>PLN02489 homocysteine S-methyltransferase
Probab=26.95 E-value=1.8e+02 Score=27.32 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhh----hHHHHhccC-CCCe
Q 026201 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHI----WHDEVCKGC-SVPF 191 (241)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~----~~d~l~~~~-~vPi 191 (241)
.+.+++.++.++.++.|.+.|||+|++=+-.... ..+.+++.. ++|+
T Consensus 160 ~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~ 211 (335)
T PLN02489 160 VTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPA 211 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeE
Confidence 4668899999999999999999999997665332 345566443 5664
No 432
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=26.93 E-value=3.3e+02 Score=24.69 Aligned_cols=61 Identities=20% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCcEEEEeCCchhh-----hHHHHhccCCCCeee---ccHHH-HHHHHHhcCCCCCCCCCCEEEEEecH
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGCSVPFLH---VSECV-AKELKEANMKPLEAGSPLRIGVLAKN 224 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~-----~~d~l~~~~~vPil~---Iid~t-~~~i~~~~~k~~~~~~~~rVGLLaT~ 224 (241)
+.+...++.||++|-+-|-.-+. .+..+++.+++|++. |+++- +.+.+..|.. =|.|++.-
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GAD--------aVLLI~~~ 141 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGAD--------AVLLIAAI 141 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-S--------EEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCC--------EeehhHHh
Confidence 34457889999999999886554 236677789999886 33432 4455666765 56666643
No 433
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=26.91 E-value=1.8e+02 Score=23.76 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCc-EEEEeCCchhhhHHHHhccC----CCCeeeccHHHHHHHHHhcC
Q 026201 153 NLRRKRVFLEKAGAR-CIVMPCHLSHIWHDEVCKGC----SVPFLHVSECVAKELKEANM 207 (241)
Q Consensus 153 ~l~~~~~~Le~~Gad-~IvIaCNTAH~~~d~l~~~~----~vPil~Iid~t~~~i~~~~~ 207 (241)
.+.+..+.|++.|++ ++.|.+++... ..+..+.. ++|+++ |.-.+..+..|.
T Consensus 52 ~~~~~~~~f~~~g~~~V~~iS~D~~~~-~~~~~~~~~~~~~f~lLs--D~~~~~~~~ygv 108 (155)
T cd03013 52 GYVENADELKAKGVDEVICVSVNDPFV-MKAWGKALGAKDKIRFLA--DGNGEFTKALGL 108 (155)
T ss_pred HHHHhHHHHHHCCCCEEEEEECCCHHH-HHHHHHhhCCCCcEEEEE--CCCHHHHHHcCC
Confidence 355666788999995 99999998876 33333333 455555 554444555554
No 434
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.67 E-value=3.6e+02 Score=22.14 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=46.8
Q ss_pred cchhhccCCeEEEEe-CCChHHHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHH
Q 026201 73 SDALLNQANTVGIVG-GASVDSTLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIV 151 (241)
Q Consensus 73 ~~~~~~~~k~IGIIG-GmGp~AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~ 151 (241)
....|.+.++|=|+| |.+...+.++..++... ... ....++..... + .+.|..-.. ...+.-.++
T Consensus 26 ~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~-g~~----~~~~~~~~~~~--~-~~~D~vI~i-----S~sG~t~~~- 91 (179)
T cd05005 26 LISAILNAKRIFVYGAGRSGLVAKAFAMRLMHL-GLN----VYVVGETTTPA--I-GPGDLLIAI-----SGSGETSSV- 91 (179)
T ss_pred HHHHHHhCCeEEEEecChhHHHHHHHHHHHHhC-CCe----EEEeCCCCCCC--C-CCCCEEEEE-----cCCCCcHHH-
Confidence 455666789999998 66666666666666432 211 11112111000 0 001111000 011222233
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCchhhhH
Q 026201 152 ENLRRKRVFLEKAGARCIVMPCHLSHIWH 180 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvIaCNTAH~~~ 180 (241)
.+.++.+.+.|+..|+|.++......
T Consensus 92 ---i~~~~~ak~~g~~iI~IT~~~~s~la 117 (179)
T cd05005 92 ---VNAAEKAKKAGAKVVLITSNPDSPLA 117 (179)
T ss_pred ---HHHHHHHHHCCCeEEEEECCCCCchH
Confidence 34556788899999999988666554
No 435
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=26.53 E-value=99 Score=28.58 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH-------HHH--HHHHhcCCCCCCCCCCEEEEEec
Q 026201 153 NLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAK--ELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 153 ~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~-------t~~--~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
.+.+.++.|.+. +|+||+=.. -|....++.+..++||||..+. .+. .+.+... ...+.+|+++|-
T Consensus 83 sl~Dt~~vls~y-~D~iv~R~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g----~l~g~~v~~vGd 156 (304)
T TIGR00658 83 SIKDTARVLSRY-VDGIMARVY-KHEDVEELAKYASVPVINGLTDLFHPCQALADLLTIIEHFG----KLKGVKVVYVGD 156 (304)
T ss_pred CHHHHHHHHHHh-CCEEEEECC-ChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHHHhC----CCCCcEEEEEeC
Confidence 355566788888 999999854 4556788888999999997542 111 1223211 124568999986
Q ss_pred -HHHHhhh
Q 026201 224 -NAILTAG 230 (241)
Q Consensus 224 -~~T~~s~ 230 (241)
..|..|-
T Consensus 157 ~~~v~~Sl 164 (304)
T TIGR00658 157 GNNVCNSL 164 (304)
T ss_pred CCchHHHH
Confidence 3444443
No 436
>PRK02929 L-arabinose isomerase; Provisional
Probab=26.43 E-value=2.4e+02 Score=28.18 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=24.1
Q ss_pred HhCCcEEEEeCCchhhhH--HHHhccCCCCeeecc
Q 026201 163 KAGARCIVMPCHLSHIWH--DEVCKGCSVPFLHVS 195 (241)
Q Consensus 163 ~~Gad~IvIaCNTAH~~~--d~l~~~~~vPil~Ii 195 (241)
+.+||.|++.+.|..... -.+-+.+++|+++.-
T Consensus 70 ~~~~dgvi~~m~TFs~a~~~i~~~~~l~~PvL~~~ 104 (499)
T PRK02929 70 DDNCAGVITWMHTFSPAKMWIRGLSALQKPLLHLH 104 (499)
T ss_pred cCCCcEEEEccCCCchHHHHHHHHHHcCCCEEEEe
Confidence 556999999999988742 333456788888763
No 437
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=26.39 E-value=3.1e+02 Score=25.13 Aligned_cols=44 Identities=9% Similarity=0.204 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEeCCchhhhHHHHhccCCCCeeec
Q 026201 149 LIVENLRRKRVFLEKA--GARCIVMPCHLSHIWHDEVCKGCSVPFLHV 194 (241)
Q Consensus 149 ~i~~~l~~~~~~Le~~--Gad~IvIaCNTAH~~~d~l~~~~~vPil~I 194 (241)
.+..++++.++.+.+. +...+.++|+|.|. ++.+.+ +++-++++
T Consensus 215 f~~p~~k~i~~~i~~~~~~~~ilh~cg~~~~~-~~~~~~-~~~~~~s~ 260 (338)
T TIGR01464 215 FVLPYLKKIIEEVKARLPNVPVILFAKGAGHL-LEELAE-TGADVVGL 260 (338)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCcHHH-HHHHHh-cCCCEEEe
Confidence 3456777888888776 67788899999875 455554 35566654
No 438
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=26.36 E-value=1.8e+02 Score=26.61 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
.+.++.|.++|+|++.+. | |.|
T Consensus 49 ~~~~~~L~~~GvDviT~G-N--H~~ 70 (266)
T TIGR00282 49 LKIYEFLKQSGVNYITMG-N--HTW 70 (266)
T ss_pred HHHHHHHHhcCCCEEEcc-c--hhc
Confidence 345578899999999997 7 877
No 439
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=26.35 E-value=1.5e+02 Score=25.70 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=41.5
Q ss_pred HHHHHhCCcEEEEeCCc-hhhhHHHHhcc------CCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhh
Q 026201 159 VFLEKAGARCIVMPCHL-SHIWHDEVCKG------CSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA 229 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNT-AH~~~d~l~~~------~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s 229 (241)
+.|++.+.|.|++.+.. +..|++.+.+. .+..++-|.+.|++.+++.+.+ .|- ++...|.++
T Consensus 164 ~~l~~~~~d~i~f~S~~~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~~~--------~~~-ia~~~t~~~ 232 (240)
T PRK09189 164 AILGGAPFDAVLLYSRVAARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASLRA--------QAL-IAAMPDEKS 232 (240)
T ss_pred HHHhcCCCCEEEEeCHHHHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhcccc--------cee-ecCCCCHHH
Confidence 45667789999998864 45566766421 3577899999999887664322 343 477776654
No 440
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=26.08 E-value=4.7e+02 Score=23.22 Aligned_cols=25 Identities=4% Similarity=-0.067 Sum_probs=14.9
Q ss_pred CEEEEEecHHHHh---hhhHHHHHHhcC
Q 026201 216 LRIGVLAKNAILT---AGFYQEKLQHED 240 (241)
Q Consensus 216 ~rVGLLaT~~T~~---s~~Y~~~L~~~G 240 (241)
+||+++..+...- .+.+++.+++.|
T Consensus 136 ~~v~~i~~~~~~g~~~~~~~~~~~~~~G 163 (334)
T cd06327 136 KKWFFLTADYAFGHSLERDARKVVKANG 163 (334)
T ss_pred CeEEEEecchHHhHHHHHHHHHHHHhcC
Confidence 4899997655433 233455566655
No 441
>PRK14982 acyl-ACP reductase; Provisional
Probab=26.07 E-value=3e+02 Score=26.04 Aligned_cols=88 Identities=9% Similarity=0.020 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHH-HHh--ccC-CCCeee------------ccHHHHHH-HHHhcCCC
Q 026201 147 DSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHD-EVC--KGC-SVPFLH------------VSECVAKE-LKEANMKP 209 (241)
Q Consensus 147 ~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d-~l~--~~~-~vPil~------------Iid~t~~~-i~~~~~k~ 209 (241)
.+.....+.++++.+++.|+++..+|-.|.=..-. .+. +.+ ++.+=+ +.-..++. ....+.
T Consensus 74 ~~~~~~~~~~a~~~a~~~G~~i~~Lg~~tsiv~~~~~~~~~~~~r~i~ie~~~~TtGNs~T~~ll~~~V~la~~~lg~-- 151 (340)
T PRK14982 74 FKTARRKVLNAMALAQKKGINITALGGFSSIIFENFNLLQHKQVRNTTLEWERFTTGNTHTAYVICRQVEQNAPRLGI-- 151 (340)
T ss_pred hHHHHHHHHHHHHHHHHCCCeEEEcCChHHHhcCCcccccccccccceeccccccCCchhHHHHHHHHHHHhHHHhcc--
Confidence 44555677888899999999999999887644211 111 111 122210 11122222 222221
Q ss_pred CCCCCCCEEEEEecHHHHhhhhHHHHHHh
Q 026201 210 LEAGSPLRIGVLAKNAILTAGFYQEKLQH 238 (241)
Q Consensus 210 ~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~ 238 (241)
..+.++|.|+|..|-|-+.+-+..+++
T Consensus 152 --~l~~k~VLVtGAtG~IGs~lar~L~~~ 178 (340)
T PRK14982 152 --DLSKATVAVVGATGDIGSAVCRWLDAK 178 (340)
T ss_pred --CcCCCEEEEEccChHHHHHHHHHHHhh
Confidence 134569999999888887766555443
No 442
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=25.94 E-value=88 Score=23.18 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHH----HhccCCCCeeeccHHHHHHHHHh
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDE----VCKGCSVPFLHVSECVAKELKEA 205 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~----l~~~~~vPil~Iid~t~~~i~~~ 205 (241)
+.+..+.+++.-+.++++|-|........ +.+..+||++.+. .-+++-+.
T Consensus 20 ~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~--s~~eLG~~ 73 (95)
T PF01248_consen 20 IKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVP--SKEELGRA 73 (95)
T ss_dssp HHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEES--HHHHHHHH
T ss_pred hHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEEC--CHHHHHHH
Confidence 34556778888999999999999976544 5567799999975 44566654
No 443
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.83 E-value=2.4e+02 Score=26.89 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCcEEEEeCCch---h-----hh--HHHHhccCCCCeee--ccH-HHHHHHHHhcCC
Q 026201 156 RKRVFLEKAGARCIVMPCHLS---H-----IW--HDEVCKGCSVPFLH--VSE-CVAKELKEANMK 208 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTA---H-----~~--~d~l~~~~~vPil~--Iid-~t~~~i~~~~~k 208 (241)
+.++.|+++|||+|++-.+|. | -| +.++.+..++|++. +.. ..++.+.+.|.+
T Consensus 145 e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD 210 (368)
T PRK08649 145 ELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAA 210 (368)
T ss_pred HHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCC
Confidence 445678899999999987652 2 12 23333446899985 433 335555566654
No 444
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=25.81 E-value=1.9e+02 Score=26.62 Aligned_cols=25 Identities=8% Similarity=-0.104 Sum_probs=19.4
Q ss_pred hCCcEEEEeCCchhhhH--HHHhccCC
Q 026201 164 AGARCIVMPCHLSHIWH--DEVCKGCS 188 (241)
Q Consensus 164 ~Gad~IvIaCNTAH~~~--d~l~~~~~ 188 (241)
.+||.|+.++...++++ +.+++...
T Consensus 181 ~~aDIV~taT~s~~P~~~~~~l~pg~h 207 (301)
T PRK06407 181 RDADTITSITNSDTPIFNRKYLGDEYH 207 (301)
T ss_pred hcCCEEEEecCCCCcEecHHHcCCCce
Confidence 58999999999888875 56776543
No 445
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.81 E-value=3.4e+02 Score=21.52 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
+....+.+.+.-.+..|-.|-|+....+.+++. +..+-+ ++.+.+.+.+.|.+ +|.|.-+
T Consensus 19 ~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~-~~~~p~-~~eaL~~l~~~G~~--------~V~V~Pl 78 (127)
T cd03412 19 IDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKR-GIEVDT-PEEALAKLAADGYT--------EVIVQSL 78 (127)
T ss_pred HHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhc-CCCCCC-HHHHHHHHHHCCCC--------EEEEEeC
Confidence 444456677777899999999999998888876 333334 35677788888877 8877644
No 446
>PRK08618 ornithine cyclodeaminase; Validated
Probab=25.76 E-value=3.6e+02 Score=24.82 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=17.7
Q ss_pred hCCcEEEEeCCchhhhHH-HHhcc
Q 026201 164 AGARCIVMPCHLSHIWHD-EVCKG 186 (241)
Q Consensus 164 ~Gad~IvIaCNTAH~~~d-~l~~~ 186 (241)
.++|+|+.++...|+.++ .+++.
T Consensus 191 ~~aDiVi~aT~s~~p~i~~~l~~G 214 (325)
T PRK08618 191 EEADIIVTVTNAKTPVFSEKLKKG 214 (325)
T ss_pred hcCCEEEEccCCCCcchHHhcCCC
Confidence 479999999999999774 44443
No 447
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=25.74 E-value=1.3e+02 Score=28.31 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=37.1
Q ss_pred CcEEEEeCCchhhhHHHHhccCCCCeeec---------cHHHHHHH---HHhcCCCCCCCCCCEEEEEecHHHHhhhhHH
Q 026201 166 ARCIVMPCHLSHIWHDEVCKGCSVPFLHV---------SECVAKEL---KEANMKPLEAGSPLRIGVLAKNAILTAGFYQ 233 (241)
Q Consensus 166 ad~IvIaCNTAH~~~d~l~~~~~vPil~I---------id~t~~~i---~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~ 233 (241)
.+.++++..++|+..+.-..-+++++..| ++..-+.+ .+.|.. .+.|.||-||...+-+.
T Consensus 140 ~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~--------p~~vvat~Gtt~~Ga~D 211 (373)
T PF00282_consen 140 PKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKT--------PFAVVATAGTTNTGAID 211 (373)
T ss_dssp SSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEE--------EEEEEEEBS-TTTSBB-
T ss_pred cccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhccccccccc--------ceeeeccCCCccccccc
Confidence 46899999999998888777777765554 11222232 333322 44788898888877664
No 448
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=25.64 E-value=1.5e+02 Score=23.80 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCchhh----hHHHHhccCCCCeeeccHHHHHHHHHh
Q 026201 151 VENLRRKRVFLEKAGARCIVMPCHLSHI----WHDEVCKGCSVPFLHVSECVAKELKEA 205 (241)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~----~~d~l~~~~~vPil~Iid~t~~~i~~~ 205 (241)
..=+.+..+.+++.-+++++||..+.-. ....+.+..+||++.+... +.+-+.
T Consensus 29 ~~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk--~~LG~a 85 (116)
T COG1358 29 KKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSK--KELGKA 85 (116)
T ss_pred hhhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCH--HHHHHH
Confidence 3345667788899889999999998722 3477777789999998543 344443
No 449
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=25.58 E-value=1.5e+02 Score=27.73 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCcEEEEeCC-----ch-----------hhhHHHHhccCCCCeeeccH
Q 026201 155 RRKRVFLEKAGARCIVMPCH-----LS-----------HIWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCN-----TA-----------H~~~d~l~~~~~vPil~Iid 196 (241)
.+.++.|++.|+|+|-+... +. -.+..++++.+++||+..-.
T Consensus 227 ~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~ 284 (353)
T cd02930 227 VALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNR 284 (353)
T ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCC
Confidence 35667899999999988431 11 11236788889999986533
No 450
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=25.57 E-value=1.1e+02 Score=27.39 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhcc
Q 026201 151 VENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKG 186 (241)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~ 186 (241)
.+.+++.++.|++.|||+||+-.+.-...-.++.+.
T Consensus 168 ~~~~~~~v~~lr~~~~D~II~l~H~G~~~d~~la~~ 203 (281)
T cd07409 168 IEAAQKEADKLKAQGVNKIIALSHSGYEVDKEIARK 203 (281)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCchhHHHHHHc
Confidence 445667778898889999998766554433444444
No 451
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=25.54 E-value=2e+02 Score=23.84 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.6
Q ss_pred HHHHHHhCCc-EEEEeCCchhhhHHHHhccCCCCee
Q 026201 158 RVFLEKAGAR-CIVMPCHLSHIWHDEVCKGCSVPFL 192 (241)
Q Consensus 158 ~~~Le~~Gad-~IvIaCNTAH~~~d~l~~~~~vPil 192 (241)
++.|++.|++ +.-+||.+.-.++|.+... +.++
T Consensus 5 v~~L~~~Gv~~vfGvPg~~~~~l~dal~~~--i~~i 38 (157)
T TIGR03845 5 YNILKDAGIDLVASVPCDNLKNLLPLIEKD--FRHI 38 (157)
T ss_pred HHHHHHCCCeEEEecCcHhHHHHHHHHHhC--CcEE
Confidence 4689999997 6779999988889999543 6666
No 452
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=25.48 E-value=2.3e+02 Score=26.51 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchh-----h---hHHHHhccCCCCeeeccHH
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSH-----I---WHDEVCKGCSVPFLHVSEC 197 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH-----~---~~d~l~~~~~vPil~Iid~ 197 (241)
..+.++.|++.|+|+|-+.+-..+ + +.+++++.+++|++....-
T Consensus 243 ~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i 294 (338)
T cd02933 243 FSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGGY 294 (338)
T ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECCC
Confidence 345667899999999998554321 1 2477888899998876443
No 453
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=25.47 E-value=2.7e+02 Score=25.76 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCcEEEEe
Q 026201 154 LRRKRVFLEKAGARCIVMP 172 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIa 172 (241)
+.+.++.|+++|||.|++-
T Consensus 218 ~~~ia~~l~~aGad~I~~~ 236 (327)
T cd04738 218 LEDIADVALEHGVDGIIAT 236 (327)
T ss_pred HHHHHHHHHHcCCcEEEEE
Confidence 3445677899999999865
No 454
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=25.36 E-value=2.2e+02 Score=28.30 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCcEEEEeCCchhh-----hHHHHhccC-CCCee--eccHH-HHHHHHHhcCC
Q 026201 156 RKRVFLEKAGARCIVMPCHLSHI-----WHDEVCKGC-SVPFL--HVSEC-VAKELKEANMK 208 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH~-----~~d~l~~~~-~vPil--~Iid~-t~~~i~~~~~k 208 (241)
+.++.|.++|||+|++=|---|. ..++|++.+ +++++ ++... -++.+.+.|.+
T Consensus 251 ~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD 312 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVD 312 (505)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcC
Confidence 45678899999999998854453 347788776 47775 45332 24445566654
No 455
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=25.30 E-value=1.5e+02 Score=27.78 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhCCcEEEEeCCc
Q 026201 154 LRRKRVFLEKAGARCIVMPCHL 175 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNT 175 (241)
+.+.++.++++|||.|++-.-|
T Consensus 227 ~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 227 LDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHHHHHHHHhCCcEEEEeCCc
Confidence 3445677899999999987533
No 456
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=25.24 E-value=3.7e+02 Score=22.85 Aligned_cols=38 Identities=3% Similarity=-0.044 Sum_probs=25.7
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeecc
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Ii 195 (241)
.++.+.+.|+|.|.+++.....+.+.+++ .+++++-.+
T Consensus 72 ~~~~~~~~g~d~v~l~~~~~~~~~~~~~~-~~i~~i~~v 109 (236)
T cd04730 72 LLEVALEEGVPVVSFSFGPPAEVVERLKA-AGIKVIPTV 109 (236)
T ss_pred HHHHHHhCCCCEEEEcCCCCHHHHHHHHH-cCCEEEEeC
Confidence 34567788999999998855555566664 356655554
No 457
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=25.20 E-value=1.2e+02 Score=31.07 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=29.2
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh--HHHHhcc-----CCCCee
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW--HDEVCKG-----CSVPFL 192 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~--~d~l~~~-----~~vPil 192 (241)
-++.|+++|||.|=+++++.-.. +..|++. +++|++
T Consensus 46 Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLV 88 (611)
T PRK02048 46 QAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLV 88 (611)
T ss_pred HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEE
Confidence 34679999999999999998875 4777766 589976
No 458
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=25.18 E-value=5.2e+02 Score=23.44 Aligned_cols=35 Identities=6% Similarity=0.045 Sum_probs=23.4
Q ss_pred HHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeee
Q 026201 159 VFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLH 193 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~ 193 (241)
+.+.+.|+++|+=|..+.... ...+.+..++|+|+
T Consensus 62 ~l~~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~Is 97 (389)
T cd06352 62 DLYWEHNVDAFIGPGCPYACAPVARLAAHWNIPMIS 97 (389)
T ss_pred HHHhhcCCcEEECCCChhHHHHHHHHHhcCCCCEec
Confidence 445567899888886665543 35566667777765
No 459
>PRK09982 universal stress protein UspD; Provisional
Probab=25.15 E-value=1.6e+02 Score=23.23 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=13.2
Q ss_pred HHHHHhCCcEEEEeCC
Q 026201 159 VFLEKAGARCIVMPCH 174 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCN 174 (241)
+.-++.+||+|||.+.
T Consensus 97 ~~A~~~~aDLIVmG~~ 112 (142)
T PRK09982 97 EIMQKEQCDLLVCGHH 112 (142)
T ss_pred HHHHHcCCCEEEEeCC
Confidence 4568999999999963
No 460
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=25.14 E-value=1.4e+02 Score=27.71 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCCcE-EEEeCCchhhhHHHHhccCCCCeeecc
Q 026201 153 NLRRKRVFLEKAGARC-IVMPCHLSHIWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 153 ~l~~~~~~Le~~Gad~-IvIaCNTAH~~~d~l~~~~~vPil~Ii 195 (241)
...++++.|++.|.|. |+|-=|-++.....|.+..++|+++|.
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiP 122 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLP 122 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeec
Confidence 3556678999999995 555557666667777776789999874
No 461
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=25.10 E-value=2.2e+02 Score=27.67 Aligned_cols=128 Identities=13% Similarity=0.204 Sum_probs=66.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHHHhccCCCCCEE-Eec-CccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHH
Q 026201 82 TVGIVGGASVDSTLNLLGKLVQLSGEENDFPFL-LCS-DPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRV 159 (241)
Q Consensus 82 ~IGIIGGmGp~AT~~fy~kI~~~t~~d~~~~~v-i~S-~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~ 159 (241)
.|=+|-|+....+.+.+|.+-.....-...++. |.. -|+.++. ...+....+....+.+++.+.. +
T Consensus 213 ~IPvi~g~~~~p~~d~lK~lgAA~Atsgs~~m~Hi~GvTPEa~~~--------~~a~~~~~e~i~i~~~dl~~~~----~ 280 (400)
T PF04412_consen 213 RIPVITGLERRPSEDDLKALGAAMATSGSVAMFHIVGVTPEAPTL--------EAAFGGKAERITITDADLEEVY----E 280 (400)
T ss_pred CcCeEeCCCCCCCHHHHHHHhhhhhcccceeeEEEeCCCCCCCcc--------hhhhcCCceEEEeCHHHHHHHH----H
Confidence 455666777766778888887777665233333 322 2333210 0000000011233444444333 3
Q ss_pred HH---HHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhh----H
Q 026201 160 FL---EKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGF----Y 232 (241)
Q Consensus 160 ~L---e~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~----Y 232 (241)
.| ....+|+|++-|. |.-++++++ +++.++.++.+ .+..+.|.....+.+ .. |
T Consensus 281 ~l~~~~~~~~D~V~lGcP--H~S~~El~~------------ia~ll~gr~~~-----~~~~~~i~t~~~v~~-~a~~~G~ 340 (400)
T PF04412_consen 281 ELNTAGDEKVDLVALGCP--HLSLEELRE------------IAELLEGRKVH-----PNVPLWITTSRAVYE-LAERMGY 340 (400)
T ss_pred HhccCCCCCCCEEEECCC--CCCHHHHHH------------HHHHHhCCCCC-----CCceEEEECCHHHHH-HHHhCCH
Confidence 34 4568999999998 888888875 34444444311 123455444444433 22 6
Q ss_pred HHHHHhcCC
Q 026201 233 QEKLQHEDC 241 (241)
Q Consensus 233 ~~~L~~~G~ 241 (241)
-+.|++.|.
T Consensus 341 ~~~le~~G~ 349 (400)
T PF04412_consen 341 VERLEKAGV 349 (400)
T ss_pred HHHHHHcCC
Confidence 677777763
No 462
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=25.01 E-value=1.5e+02 Score=25.87 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCcEEEEeCCchh--------hhHHHHhccCCCCeeeccH
Q 026201 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH--------~~~d~l~~~~~vPil~Iid 196 (241)
+.++.|++.|+|.|++-.-+.. .+++++.+..++|++-...
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GG 201 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGG 201 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCC
Confidence 4457789999999888544331 3457788888999886543
No 463
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=24.93 E-value=1.3e+02 Score=26.31 Aligned_cols=33 Identities=18% Similarity=-0.006 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchh
Q 026201 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCHLSH 177 (241)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH 177 (241)
.|.+.-++.+.+.++...+.|||+||.|=....
T Consensus 12 ~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~ 44 (269)
T cd07586 12 GDVEENLEKHLEIIETARERGADLVVFPELSLT 44 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEecchhcc
Confidence 455556666666777777889999999964443
No 464
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.91 E-value=4.9e+02 Score=23.08 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=15.6
Q ss_pred CEEEEEecHHHHh---hhhHHHHHHhcC
Q 026201 216 LRIGVLAKNAILT---AGFYQEKLQHED 240 (241)
Q Consensus 216 ~rVGLLaT~~T~~---s~~Y~~~L~~~G 240 (241)
++|+++..+.-.- ...+++.+++.|
T Consensus 136 ~~v~ii~~~~~~g~~~~~~~~~~~~~~g 163 (340)
T cd06349 136 KKVAILSVNTDWGRTSADIFVKAAEKLG 163 (340)
T ss_pred cEEEEEecCChHhHHHHHHHHHHHHHcC
Confidence 4899998776543 234556666655
No 465
>PRK14071 6-phosphofructokinase; Provisional
Probab=24.65 E-value=1.5e+02 Score=28.28 Aligned_cols=45 Identities=7% Similarity=-0.034 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCc-EEEEeCCchhhhHHHHhccCCCCeeeccH
Q 026201 152 ENLRRKRVFLEKAGAR-CIVMPCHLSHIWHDEVCKGCSVPFLHVSE 196 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad-~IvIaCNTAH~~~d~l~~~~~vPil~Iid 196 (241)
+...++++.|++.|.| +|+|-=|.+.....++.+..++|+|+|..
T Consensus 94 ~~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPk 139 (360)
T PRK14071 94 DRSQEIIDGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPK 139 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecc
Confidence 3456677899999999 66677788777777777766899999843
No 466
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=24.64 E-value=4.4e+02 Score=22.43 Aligned_cols=47 Identities=6% Similarity=-0.053 Sum_probs=27.8
Q ss_pred CCcEEEEeCCchhhhH-HHHhccCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhh
Q 026201 165 GARCIVMPCHLSHIWH-DEVCKGCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA 229 (241)
Q Consensus 165 Gad~IvIaCNTAH~~~-d~l~~~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s 229 (241)
.||.||+.+...+..+ -.++..++ .+.. ... .++.|++++|.++...
T Consensus 66 ~AD~iIi~tP~Y~~s~pg~LKn~iD-----~l~~-----~~l--------~~K~v~iiat~G~~~~ 113 (191)
T PRK10569 66 QADGLIVATPVYKASFSGALKTLLD-----LLPE-----RAL--------EHKVVLPLATGGSVAH 113 (191)
T ss_pred HCCEEEEECCccCCCCCHHHHHHHH-----hCCh-----hhh--------CCCEEEEEEecCCchh
Confidence 3899999999887755 33333322 1111 111 2348999999876553
No 467
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=24.56 E-value=3.6e+02 Score=22.96 Aligned_cols=37 Identities=14% Similarity=-0.072 Sum_probs=18.7
Q ss_pred HHHHHHHhCCcEEEE-eCCchhhhHHHHhccCCCCeee
Q 026201 157 KRVFLEKAGARCIVM-PCHLSHIWHDEVCKGCSVPFLH 193 (241)
Q Consensus 157 ~~~~Le~~Gad~IvI-aCNTAH~~~d~l~~~~~vPil~ 193 (241)
.++.|...++|.|++ +++..-.+.+.+++..++|++-
T Consensus 48 ~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~ 85 (260)
T cd06304 48 NLRQLAAQGYDLIFGVGFGFMDAVEKVAKEYPDVKFAI 85 (260)
T ss_pred HHHHHHHcCCCEEEECCcchhHHHHHHHHHCCCCEEEE
Confidence 345677889997666 4442222333333322445443
No 468
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=24.54 E-value=3.6e+02 Score=25.35 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeC
Q 026201 150 IVENLRRKRVFLEKAGARCIVMPC 173 (241)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvIaC 173 (241)
+...+.+.++.|...|.|+++|=+
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT 156 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVET 156 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEEC
Confidence 344556666777777877777643
No 469
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=24.44 E-value=1.6e+02 Score=25.77 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=41.5
Q ss_pred HHHHHhCCcEEEEeCCch-hhhHHHHhc----cCCCCeeeccHHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhh
Q 026201 159 VFLEKAGARCIVMPCHLS-HIWHDEVCK----GCSVPFLHVSECVAKELKEANMKPLEAGSPLRIGVLAKNAILTA 229 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTA-H~~~d~l~~----~~~vPil~Iid~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s 229 (241)
+.++..++|.|++.+..+ -.|++.+.. ..+.|++-|-+.|++.+++.|++ +.+.+..+|.++
T Consensus 176 ~~~~~~~~d~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta~a~~~~G~~---------~~~~a~~~t~~~ 242 (255)
T PRK05752 176 QRVEAERLNGLVVSSGQGFEHLQQLAGADWPELARLPLFVPSPRVAEQARAAGAQ---------TVVDCRGASAAA 242 (255)
T ss_pred HHHHhCCCCEEEECCHHHHHHHHHHhChhHHHhcCceEEEeCHHHHHHHHHcCCC---------ceeeCCCCChHH
Confidence 456677899999986433 223333321 34678999999999999998874 445676666553
No 470
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=24.44 E-value=3e+02 Score=29.72 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHh-CCcEEEEeCCchhhhHHHHh-----------------------ccCCCCeeeccH---HHHHHH
Q 026201 150 IVENLRRKRVFLEKA-GARCIVMPCHLSHIWHDEVC-----------------------KGCSVPFLHVSE---CVAKEL 202 (241)
Q Consensus 150 i~~~l~~~~~~Le~~-Gad~IvIaCNTAH~~~d~l~-----------------------~~~~vPil~Iid---~t~~~i 202 (241)
++....++++.|++. |+++=|+-+.|...+.++.. ...+.|+|...| ++++.+
T Consensus 743 ~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~E~hn~~gglg~~~~sy~~~~l~~~~~p~Va~~D~~~aVae~l 822 (896)
T PRK13012 743 ILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAAERANLLGPAEEARVPYVTQCLAGTRGPVVAATDYVRAVPEQI 822 (896)
T ss_pred HHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHHHHHhhcCCCccccccHHHHhhcccCCCeEEecchHHHHHHHH
Confidence 455566788899988 88888887777766543311 113568888777 666666
Q ss_pred HHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHhcCC
Q 026201 203 KEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEDC 241 (241)
Q Consensus 203 ~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~~G~ 241 (241)
.+... .++-.|||++--+|+-..+.++..|+
T Consensus 823 ~~~~~--------~~~~~LGvD~FG~Sg~~~~L~~~fGl 853 (896)
T PRK13012 823 RAFVP--------ARYVTLGTDGFGRSDTRAALRRFFEV 853 (896)
T ss_pred HHhCC--------CCeEEEeeCCCCCCCCHHHHHHHhCC
Confidence 55421 25667777766667777777666664
No 471
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=24.36 E-value=3.3e+02 Score=25.18 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCch
Q 026201 150 IVENLRRKRVFLEKAGARCIVMPCHLS 176 (241)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvIaCNTA 176 (241)
+.+.+.+.++.+.++|||.|.++=.++
T Consensus 184 ~t~~~~~~~~~~~eaGad~i~i~d~~~ 210 (346)
T PRK00115 184 LADATIAYLNAQIEAGAQAVQIFDSWA 210 (346)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcc
Confidence 455566666767789999999885533
No 472
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=24.23 E-value=1.5e+02 Score=26.74 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCchhh--------hHHHHhccCCCCee
Q 026201 151 VENLRRKRVFLEKAGARCIVMPCHLSHI--------WHDEVCKGCSVPFL 192 (241)
Q Consensus 151 ~~~l~~~~~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~~vPil 192 (241)
.+...+.++..++.|||.+++..--.+. +++++.+.+++|++
T Consensus 85 t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~ 134 (293)
T PRK04147 85 TAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMI 134 (293)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEE
No 473
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=24.19 E-value=1.3e+02 Score=27.94 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH-------HHH--HHHHhcCCCCCCCCCCEEEEEec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC-------VAK--ELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~-------t~~--~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
+.+.++.|.+ .+|+|++=.. .|..+.++.+..++||||..+. .+. -+++.... . ..++.+|+++|=
T Consensus 87 ~~dt~~vls~-~~D~iv~R~~-~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e~~g~-~-~l~g~~va~vGd 161 (311)
T PRK14804 87 IDLEARYLSR-NVSVIMARLK-KHEDLLVMKNGSQVPVINGCDNMFHPCQSLADIMTIALDSPE-I-PLNQKQLTYIGV 161 (311)
T ss_pred HHHHHHHHHh-cCCEEEEeCC-ChHHHHHHHHHCCCCEEECCCCCCChHHHHHHHHHHHHHhCC-C-CCCCCEEEEECC
Confidence 3344567777 9999999754 4456678888899999998653 111 13332110 0 124579999993
No 474
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=23.99 E-value=3.2e+02 Score=27.18 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=23.8
Q ss_pred hCCcEEEEeCCchhhhH--HHHhccCCCCeeecc
Q 026201 164 AGARCIVMPCHLSHIWH--DEVCKGCSVPFLHVS 195 (241)
Q Consensus 164 ~Gad~IvIaCNTAH~~~--d~l~~~~~vPil~Ii 195 (241)
.+||.|++.+.|..... -.+-+.+++|+++.-
T Consensus 65 ~~~dgvi~~m~TFs~a~~~i~~~~~l~~PvL~~~ 98 (484)
T cd03557 65 DNCAGVITWMHTFSPAKMWIAGLTALQKPLLHLH 98 (484)
T ss_pred CCccEEEEccCCCchHHHHHHHHHHcCCCEEEEc
Confidence 67999999999988742 333456788888763
No 475
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.98 E-value=4.5e+02 Score=23.39 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHH-HhCCcEEEEeCCchhhh-HHHHhccCCCCeee
Q 026201 159 VFLE-KAGARCIVMPCHLSHIW-HDEVCKGCSVPFLH 193 (241)
Q Consensus 159 ~~Le-~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~ 193 (241)
+.|. +.||++|+=|..+.... ...+.+..++|+|.
T Consensus 60 ~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 96 (344)
T cd06348 60 QTLINKDRVLAIIGPTLSQQAFAADPIAERAGVPVVG 96 (344)
T ss_pred HHHhhhcCceEEECCCCcHHHHhhhHHHHhCCCCEEe
Confidence 3444 44888887665554433 23444555677664
No 476
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.97 E-value=1.6e+02 Score=26.12 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCcEEEEeCCchh--------hhHHHHhccCCCCeeecc
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH--------~~~d~l~~~~~vPil~Ii 195 (241)
.+.++.|++.|+|.|++-.-+.. .++.++++.+++|++-..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~G 206 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASG 206 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeC
Confidence 34557889999999888554331 245888888999998554
No 477
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=23.90 E-value=2e+02 Score=32.61 Aligned_cols=83 Identities=24% Similarity=0.273 Sum_probs=50.9
Q ss_pred CCeEEEEe-CCChHHHHHHHHHHHHHhc--cC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHH
Q 026201 80 ANTVGIVG-GASVDSTLNLLGKLVQLSG--EE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENL 154 (241)
Q Consensus 80 ~k~IGIIG-GmGp~AT~~fy~kI~~~t~--~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l 154 (241)
.++|+||| |-..+|+++-+.+.-..+. ++ ..--+++|..|.+. .|. + .+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmk----------------------ldk--~--vv 1838 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMK----------------------LDK--F--VV 1838 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccc----------------------hhH--H--HH
Confidence 57999997 6677777776665533332 11 22234444444321 111 1 34
Q ss_pred HHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCS 188 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~ 188 (241)
++.++.|++.|++|+.=.----|.-+|++.+..+
T Consensus 1839 ~rrv~ll~~egi~f~tn~eigk~vs~d~l~~~~d 1872 (2142)
T KOG0399|consen 1839 QRRVDLLEQEGIRFVTNTEIGKHVSLDELKKEND 1872 (2142)
T ss_pred HHHHHHHHhhCceEEeeccccccccHHHHhhccC
Confidence 5667889999999987666666777888887544
No 478
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=23.72 E-value=1.9e+02 Score=30.19 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh---HHHHhccCCCCeee
Q 026201 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW---HDEVCKGCSVPFLH 193 (241)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~---~d~l~~~~~vPil~ 193 (241)
..+.+.+..-+++.+|++.|-+-|++-|-|.|-. .|.+++.-++.+|+
T Consensus 635 ~ne~l~qr~~~ii~~mkk~~~etiaVi~kt~~d~~~~~d~lre~~~~r~I~ 685 (747)
T COG3973 635 ANEELVQRNPDIIPRMKKRGSETIAVICKTDHDCKAVMDSLREKDSQRTIA 685 (747)
T ss_pred chHHHHHhhHHHHHHHHhcCCCceEEECCcHHHHHHHHHHHhhcchhhHHH
Confidence 4467788888899999999999999999999964 48888765554443
No 479
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=23.70 E-value=5.2e+02 Score=23.99 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHHhCCcEEEEeCCchhhhHHHHhccCCCCeee
Q 026201 160 FLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLH 193 (241)
Q Consensus 160 ~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~ 193 (241)
.|...|+.+|+=|.++..... .+.+..++|+|.
T Consensus 64 ~li~~~v~aiiGp~~S~~~~a-~i~~~~~iP~Is 96 (404)
T cd06370 64 DWWKRGVVAFIGPECTCTTEA-RLAAAWNLPMIS 96 (404)
T ss_pred HHHhcCceEEECCCchhHHHH-HHHhhcCCcEEe
Confidence 344559999888877654433 466667777775
No 480
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.67 E-value=4.1e+02 Score=22.54 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=11.7
Q ss_pred HHHHHHhCCcEEEEeC
Q 026201 158 RVFLEKAGARCIVMPC 173 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaC 173 (241)
++.+...++|.|++..
T Consensus 48 i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 48 VEDLLTRGVNVLIINP 63 (282)
T ss_pred HHHHHHcCCCEEEEec
Confidence 3567788999888753
No 481
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=23.60 E-value=1.3e+02 Score=27.75 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=34.8
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccC-CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHH
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE-NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRK 157 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d-~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~ 157 (241)
..++||.+-=||.+ =+=...|++...++ +..-+-|+-||.-. +..+|+..+++ .+.+.
T Consensus 20 ~~~~igfVPTMGaL--HeGHlsLi~~A~~~~d~vVVSIFVNP~QF----~~~eD~~~YPR---------------~~e~D 78 (280)
T PF02569_consen 20 AGKTIGFVPTMGAL--HEGHLSLIRRARAENDVVVVSIFVNPTQF----GPNEDFDKYPR---------------TLERD 78 (280)
T ss_dssp TTSSEEEEEE-SS----HHHHHHHHHHHHHSSEEEEEE---GGGS----STTSHTTTS------------------HHHH
T ss_pred cCCeEEEECCCchh--hHHHHHHHHHHHhCCCEEEEEECcCcccC----CCcchhhhCCC---------------ChHHH
Confidence 46899999999987 22233444444444 33323233344321 11123322221 24566
Q ss_pred HHHHHHhCCcEEEEeC
Q 026201 158 RVFLEKAGARCIVMPC 173 (241)
Q Consensus 158 ~~~Le~~Gad~IvIaC 173 (241)
++.|++.|||++-.|.
T Consensus 79 ~~ll~~~gvD~vF~Ps 94 (280)
T PF02569_consen 79 LELLEKAGVDAVFAPS 94 (280)
T ss_dssp HHHHHHTT-SEEE---
T ss_pred HHHHhccCCCEEEcCC
Confidence 7789999999999885
No 482
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=23.59 E-value=1.3e+02 Score=25.66 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCcEEEEeCCchh--------hhHHHHhccCCCCeeecc
Q 026201 156 RKRVFLEKAGARCIVMPCHLSH--------IWHDEVCKGCSVPFLHVS 195 (241)
Q Consensus 156 ~~~~~Le~~Gad~IvIaCNTAH--------~~~d~l~~~~~vPil~Ii 195 (241)
+.++.+++.||+.+++..-+.. ..+.++.+.+++|++-..
T Consensus 150 ~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~G 197 (234)
T cd04732 150 ELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASG 197 (234)
T ss_pred HHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEec
Confidence 4456789999998888654331 345778888899988544
No 483
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=23.54 E-value=2e+02 Score=23.02 Aligned_cols=40 Identities=13% Similarity=-0.015 Sum_probs=29.9
Q ss_pred HHHHHHhCCc-EEEEeCCchhhhHHHHhc----cCCCCeeeccHH
Q 026201 158 RVFLEKAGAR-CIVMPCHLSHIWHDEVCK----GCSVPFLHVSEC 197 (241)
Q Consensus 158 ~~~Le~~Gad-~IvIaCNTAH~~~d~l~~----~~~vPil~Iid~ 197 (241)
++.|++.|++ +..+|+.....+++.+.+ ..++.++..-.+
T Consensus 6 ~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E 50 (160)
T cd07034 6 ARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESE 50 (160)
T ss_pred HHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCH
Confidence 4678999997 778899888888899864 446666665444
No 484
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=23.54 E-value=1.8e+02 Score=26.01 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhh
Q 026201 142 GVQLDDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIW 179 (241)
Q Consensus 142 ~~~~d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~ 179 (241)
+...|++.+.+ .+++|.+.|++-|+++..|.-.+
T Consensus 16 dg~id~~~~~~----~i~~l~~~Gv~gl~~~GstGE~~ 49 (289)
T PF00701_consen 16 DGSIDEDALKR----LIDFLIEAGVDGLVVLGSTGEFY 49 (289)
T ss_dssp TSSB-HHHHHH----HHHHHHHTTSSEEEESSTTTTGG
T ss_pred CcCcCHHHHHH----HHHHHHHcCCCEEEECCCCcccc
Confidence 34556666554 44689999999999999986554
No 485
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.54 E-value=1.1e+02 Score=23.18 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCCEEEEEecHHHHhhhhHHHHHHhcCC
Q 026201 196 ECVAKELKEANMKPLEAGSPLRIGVLAKNAILTAGFYQEKLQHEDC 241 (241)
Q Consensus 196 d~t~~~i~~~~~k~~~~~~~~rVGLLaT~~T~~s~~Y~~~L~~~G~ 241 (241)
.++.+.+++.+. ++.++.-..+....-|.++|++.||
T Consensus 20 ~e~l~~L~~~g~---------~~~~lTNns~~s~~~~~~~L~~~Gi 56 (101)
T PF13344_consen 20 VEALDALRERGK---------PVVFLTNNSSRSREEYAKKLKKLGI 56 (101)
T ss_dssp HHHHHHHHHTTS---------EEEEEES-SSS-HHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCC---------CEEEEeCCCCCCHHHHHHHHHhcCc
Confidence 455667777642 7877777666666889999988886
No 486
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=23.49 E-value=4.9e+02 Score=22.60 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=45.7
Q ss_pred HHHHHHHhCCcEEEEeCCchhhh-HHHHhccCCCCeeec---------------------------cHHHHHHHHHhcCC
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIW-HDEVCKGCSVPFLHV---------------------------SECVAKELKEANMK 208 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~-~d~l~~~~~vPil~I---------------------------id~t~~~i~~~~~k 208 (241)
....+.+.|++.|+=|-...... ...+....++|+|+. .+++++.++..+
T Consensus 43 ~~~~~~~~~v~aviGp~~~~~~~~~~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~-- 120 (348)
T PF01094_consen 43 AICSLNKQGVVAVIGPSCSSSAEAVASLASEWNIPQISPGSTSPSLSDRKTRYPTFFRTVPSDSSQARALVDLLKHFG-- 120 (348)
T ss_dssp HHHHHHHHTECEEEETSSHHHHHHHHHHHHHTT-EEEESSGGSGGGGSTTTTTTTEEESSB-HHHHHHHHHHHHHHTT--
T ss_pred hhhhccCCCcEEEECCCcccccchhheeecccccceeeccccccccccchhhccccccccccHHHHHHHHHHhhhcCC--
Confidence 33455678899888887666443 466666667777765 223444444443
Q ss_pred CCCCCCCCEEEEEecHHHHh---hhhHHHHHHhc
Q 026201 209 PLEAGSPLRIGVLAKNAILT---AGFYQEKLQHE 239 (241)
Q Consensus 209 ~~~~~~~~rVGLLaT~~T~~---s~~Y~~~L~~~ 239 (241)
.++|+++..+.+.- ...+++.+++.
T Consensus 121 ------w~~v~vv~~~~~~~~~~~~~~~~~~~~~ 148 (348)
T PF01094_consen 121 ------WTRVSVVYSDDDYGNSLADSFQDLLRER 148 (348)
T ss_dssp ------SSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ------Cceeeeeccccccccccchhhhhhhccc
Confidence 45999999988872 23345555553
No 487
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=23.46 E-value=3.7e+02 Score=24.42 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=0.0
Q ss_pred EEEEe--CCChHHHHHHHHHHHHHhccC--CCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHH
Q 026201 83 VGIVG--GASVDSTLNLLGKLVQLSGEE--NDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKR 158 (241)
Q Consensus 83 IGIIG--GmGp~AT~~fy~kI~~~t~~d--~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~ 158 (241)
|-+.| |-++.=|.+=.+++++.+.+. +..+++.-- ...+.++.++..+
T Consensus 38 i~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv-------------------------~~~~t~~ai~~a~--- 89 (294)
T TIGR02313 38 ISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGT-------------------------GALNHDETLELTK--- 89 (294)
T ss_pred EEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEEC-------------------------CcchHHHHHHHHH---
Q ss_pred HHHHHhCCcEEEEeCCchhh--------hHHHHhccC-CCCee
Q 026201 159 VFLEKAGARCIVMPCHLSHI--------WHDEVCKGC-SVPFL 192 (241)
Q Consensus 159 ~~Le~~Gad~IvIaCNTAH~--------~~d~l~~~~-~vPil 192 (241)
..++.|||.+++.-..... +|..|.+.+ ++|++
T Consensus 90 -~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~ 131 (294)
T TIGR02313 90 -FAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPII 131 (294)
T ss_pred -HHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEE
No 488
>PRK06756 flavodoxin; Provisional
Probab=23.35 E-value=3.8e+02 Score=21.22 Aligned_cols=86 Identities=8% Similarity=-0.030 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhcc----CCCCeee---ccHHHHHHHHHhcCCCCCCCCCCEEEE
Q 026201 148 SLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKG----CSVPFLH---VSECVAKELKEANMKPLEAGSPLRIGV 220 (241)
Q Consensus 148 ~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~----~~vPil~---Iid~t~~~i~~~~~k~~~~~~~~rVGL 220 (241)
+.+.+.+. +.|++.|+++.++.....+.. +.+.+. +..|..+ +.+...+.+.+... ...+++++++
T Consensus 16 e~vA~~ia---~~l~~~g~~v~~~~~~~~~~~-~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~---~~l~~k~~~~ 88 (148)
T PRK06756 16 EEMADHIA---GVIRETENEIEVIDIMDSPEA-SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDS---IDLTGKKAAV 88 (148)
T ss_pred HHHHHHHH---HHHhhcCCeEEEeehhccCCH-HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhc---CCCCCCEEEE
Confidence 44444443 556778888777766544322 233321 2334442 22223333333210 0124679999
Q ss_pred EecHHH------HhhhhHHHHHHhcC
Q 026201 221 LAKNAI------LTAGFYQEKLQHED 240 (241)
Q Consensus 221 LaT~~T------~~s~~Y~~~L~~~G 240 (241)
+||-.+ -..+...+.|++.|
T Consensus 89 fgt~~~~y~~~~~a~~~l~~~l~~~g 114 (148)
T PRK06756 89 FGSCDSAYPKYGVAVDILIEKLQERG 114 (148)
T ss_pred EeCCCCchHHHHHHHHHHHHHHHHCC
Confidence 999322 11233455555555
No 489
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=23.29 E-value=6.1e+02 Score=23.60 Aligned_cols=47 Identities=9% Similarity=0.060 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHh-ccCCCCeeec
Q 026201 148 SLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVC-KGCSVPFLHV 194 (241)
Q Consensus 148 ~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~-~~~~vPil~I 194 (241)
+.+...+.+..+.|++...|++++-..|...+.-.+. ...++|++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hv 123 (365)
T TIGR03568 76 KSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHI 123 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEE
Confidence 4455566777788999999999999988877764444 4578999986
No 490
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=23.27 E-value=76 Score=27.34 Aligned_cols=39 Identities=10% Similarity=0.249 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCcEE-EEeCCchhhhHHHHhccCCCCeee
Q 026201 154 LRRKRVFLEKAGARCI-VMPCHLSHIWHDEVCKGCSVPFLH 193 (241)
Q Consensus 154 l~~~~~~Le~~Gad~I-vIaCNTAH~~~d~l~~~~~vPil~ 193 (241)
+...++.+++.++|+| ++|- .+..+.+++++.+++|++-
T Consensus 106 l~~~~~~i~~~~PD~vEilPg-~~p~vi~~i~~~~~~PiIA 145 (175)
T PF04309_consen 106 LETGIKQIEQSKPDAVEILPG-VMPKVIKKIREETNIPIIA 145 (175)
T ss_dssp HHHHHHHHHHHT-SEEEEESC-CHHHHHCCCCCCCSS-EEE
T ss_pred HHHHHHHHhhcCCCEEEEchH-HHHHHHHHHHHhcCCCEEe
Confidence 4556678999999987 7888 7777889999999999874
No 491
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=23.23 E-value=1.7e+02 Score=22.39 Aligned_cols=38 Identities=8% Similarity=0.185 Sum_probs=28.4
Q ss_pred HHHHHHHhCCcEEEEeCCchhhhHHHH---hccCCCCeeec
Q 026201 157 KRVFLEKAGARCIVMPCHLSHIWHDEV---CKGCSVPFLHV 194 (241)
Q Consensus 157 ~~~~Le~~Gad~IvIaCNTAH~~~d~l---~~~~~vPil~I 194 (241)
..+.+++..|.+++|+.|+.-...+.+ .+..+||++..
T Consensus 24 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 345677888999999999866655554 45668998765
No 492
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=23.23 E-value=2.2e+02 Score=21.15 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhcc-CCCCeee
Q 026201 150 IVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKG-CSVPFLH 193 (241)
Q Consensus 150 i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~-~~vPil~ 193 (241)
-...+.+..+.+++.|+++|.|...+.....+.+++. .+.|++.
T Consensus 44 ~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~ 88 (124)
T PF00578_consen 44 ELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLS 88 (124)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEE
T ss_pred chhHHHHHhhhhccceEEeeecccccccchhhhhhhhcccccccc
Confidence 3445666777888999999999999888543333332 5666665
No 493
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=23.19 E-value=5.6e+02 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=19.2
Q ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHhccC
Q 026201 79 QANTVGIVGGASVDSTLNLLGKLVQLSGEE 108 (241)
Q Consensus 79 ~~k~IGIIGGmGp~AT~~fy~kI~~~t~~d 108 (241)
+..++||.||-|.-=|+ ....|.+++.+|
T Consensus 226 kGq~~~Ipg~~G~GKTv-l~~~iak~a~ad 254 (586)
T PRK04192 226 KGGTAAIPGPFGSGKTV-TQHQLAKWADAD 254 (586)
T ss_pred cCCeEEEecCCCCCHHH-HHHHHHhcCCCC
Confidence 45689999988876663 345566655444
No 494
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=23.09 E-value=1.7e+02 Score=26.14 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeee
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLH 193 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~ 193 (241)
+.+.++.+++.|+++|+.--+......+.|.+.+++|++.
T Consensus 209 l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ 248 (282)
T cd01017 209 LAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLV 248 (282)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEE
Confidence 5556678999999999998888888889999888888764
No 495
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=23.06 E-value=3.3e+02 Score=25.77 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEecCccchHHhhhcCCChhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHhC-CcEEEE
Q 026201 93 STLNLLGKLVQLSGEENDFPFLLCSDPLLNKELLSHDRSSFSSLNCKGGGVQLDDSLIVENLRRKRVFLEKAG-ARCIVM 171 (241)
Q Consensus 93 AT~~fy~kI~~~t~~d~~~~~vi~S~p~i~d~ll~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~Le~~G-ad~IvI 171 (241)
.|.+.++++.+...++ ++++.-..+.|+| |++.+.=.+..+..++.| .++.-|
T Consensus 244 ~t~~~l~~L~~~g~k~----iiv~pigFvsDhl----------------------ETL~Eid~e~~e~~~~~Gg~~y~ri 297 (320)
T COG0276 244 YTDDLLEELGEKGVKK----IIVVPIGFVSDHL----------------------ETLYEIDHEYRELAEEAGGKKYVRI 297 (320)
T ss_pred CHHHHHHHHHhcCCCe----EEEECCchhhhhH----------------------HHHHHHHHHHHHHHHHhCCccEEec
Confidence 5888888887764443 4444433333332 233333344445555666 999999
Q ss_pred eCCchhh-hHHHHh
Q 026201 172 PCHLSHI-WHDEVC 184 (241)
Q Consensus 172 aCNTAH~-~~d~l~ 184 (241)
||--.|. |.+.+.
T Consensus 298 p~lN~~p~fi~~la 311 (320)
T COG0276 298 PCLNDSPEFIDALA 311 (320)
T ss_pred CCCCCCHHHHHHHH
Confidence 9955554 555543
No 496
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=23.01 E-value=1.7e+02 Score=24.52 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCC-CCeeec-cHHHHHHHHHhc
Q 026201 146 DDSLIVENLRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCS-VPFLHV-SECVAKELKEAN 206 (241)
Q Consensus 146 d~~~i~~~l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~-vPil~I-id~t~~~i~~~~ 206 (241)
|..+-...+.+.++.|.++|.-+|+-+..-.+.+.+..++.++ -+++.| +++-.+.+.++.
T Consensus 55 dR~e~~rr~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 55 DREENIRRIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 3445556778889999999997776665555555666666654 244443 455566666653
No 497
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=23.00 E-value=4.7e+02 Score=24.15 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCcEEEE---eCCch------------hhhHHHHhccCCCCee-------eccHHHHHHHHHhcCCC
Q 026201 152 ENLRRKRVFLEKAGARCIVM---PCHLS------------HIWHDEVCKGCSVPFL-------HVSECVAKELKEANMKP 209 (241)
Q Consensus 152 ~~l~~~~~~Le~~Gad~IvI---aCNTA------------H~~~d~l~~~~~vPil-------~Iid~t~~~i~~~~~k~ 209 (241)
+...+.++.+++.|+|.|-+ +||.- ......+++.+++|++ .-+...++.+.+.|.+
T Consensus 112 ~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gad- 190 (325)
T cd04739 112 GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGAD- 190 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCC-
Q ss_pred CCCCCCCEEEEEec
Q 026201 210 LEAGSPLRIGVLAK 223 (241)
Q Consensus 210 ~~~~~~~rVGLLaT 223 (241)
=|-+..|
T Consensus 191 -------gi~~~nt 197 (325)
T cd04739 191 -------GLVLFNR 197 (325)
T ss_pred -------eEEEEcC
No 498
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=22.93 E-value=1.1e+02 Score=26.78 Aligned_cols=30 Identities=13% Similarity=-0.019 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEeCC
Q 026201 145 LDDSLIVENLRRKRVFLEKAGARCIVMPCH 174 (241)
Q Consensus 145 ~d~~~i~~~l~~~~~~Le~~Gad~IvIaCN 174 (241)
.|.+.-++.+.+.++...+.|||+||+|=-
T Consensus 14 ~~~~~n~~~i~~~i~~A~~~gadlivfPE~ 43 (280)
T cd07574 14 ASFEEFAAKVEYWVAEAAGYGADLLVFPEY 43 (280)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCEEECchH
Confidence 355555556666667777889999999853
No 499
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.84 E-value=5.5e+02 Score=22.92 Aligned_cols=54 Identities=22% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCcEEEEeCCchh----------------hhHHHHhccCCCCeee-c------cHHHHHHHHHhcCC
Q 026201 155 RRKRVFLEKAGARCIVMPCHLSH----------------IWHDEVCKGCSVPFLH-V------SECVAKELKEANMK 208 (241)
Q Consensus 155 ~~~~~~Le~~Gad~IvIaCNTAH----------------~~~d~l~~~~~vPil~-I------id~t~~~i~~~~~k 208 (241)
.+.++.++++|+|.|-+-+...+ ...+.+++.+++|+.= + ....++.+.+.|.+
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d 181 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGAD 181 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCC
Confidence 44567788899999977443222 1245667777888652 1 22345556666544
No 500
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=22.83 E-value=1.1e+02 Score=29.98 Aligned_cols=76 Identities=5% Similarity=0.062 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCCchhhhHHHHhccCCCCeeeccHH--------HHH--HHHHhcCCCCCCCCCCEEEEEec
Q 026201 154 LRRKRVFLEKAGARCIVMPCHLSHIWHDEVCKGCSVPFLHVSEC--------VAK--ELKEANMKPLEAGSPLRIGVLAK 223 (241)
Q Consensus 154 l~~~~~~Le~~Gad~IvIaCNTAH~~~d~l~~~~~vPil~Iid~--------t~~--~i~~~~~k~~~~~~~~rVGLLaT 223 (241)
+.+.++.|.+. +|+||+=.+ .|....++.+..++||||..+. .+. .+++...+......+.+|+++|-
T Consensus 172 i~DTarvLs~y-~D~IviR~~-~~~~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD 249 (429)
T PRK11891 172 IYDTSRVMSGY-VDALVIRHP-EQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGD 249 (429)
T ss_pred HHHHHHHHHHh-CCEEEEeCC-chhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECc
Confidence 45556788888 999999864 4557788888899999999851 111 13332100000023569999996
Q ss_pred ---HHHHhhhh
Q 026201 224 ---NAILTAGF 231 (241)
Q Consensus 224 ---~~T~~s~~ 231 (241)
..|..|-.
T Consensus 250 ~~~~rv~~Sl~ 260 (429)
T PRK11891 250 LKYGRTVHSLV 260 (429)
T ss_pred CCCChHHHHHH
Confidence 35555443
Done!