BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026203
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6T6K9|XYLA_FERGO Xylose isomerase OS=Fervidobacterium gondwanense GN=xylA PE=3 SV=1
Length = 433
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 67 EAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSH 126
E F H R+ A LR+S + D E I+ ++ + +L + A L FSH
Sbjct: 92 EYFTFHDRDLAHEGLTLRESNKILDKVVEKIKEYMKSSNVKLLWGTANL--------FSH 143
Query: 127 LKFELGQ--------LRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNM 168
++ G +A S+ + M D EL L L G E YDN+
Sbjct: 144 PRYAQGAATSPNPLVFSYAASQVKKMLDVTKELGGLGYVLWGGREGYDNL 193
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Query: 69 FEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQ-EFFSHL 127
F+ H +A AL SR LP + ++ F DTE E + R++ NQ FS +
Sbjct: 142 FQTHTEAQAAIN-ALHGSRTLPGASSSLVVKFADTEK---ERGLRRMQQVANQLGMFSPI 197
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
+ G + TQ + D+L++ +A AL+ AY N A + + +
Sbjct: 198 ALQFGAYS---AYTQAVSDQLMQQQA---ALVAAHSAYLNPMATMAAVQMQQMATINPNG 251
Query: 188 VKATLLELVEQNKINRSLLTLLDENIANAQKS 219
+ AT + + N I S T + Q S
Sbjct: 252 IIAT--PITQINPITSSSGTSTPPTLTATQVS 281
>sp|Q8AVM5|VPP1_XENLA V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis
GN=atp6v0a1 PE=2 SV=1
Length = 831
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 45 AQTGHIARLEFKRRLEKDAEA-REAFEQHVR--EEAERRRALRQSRV------LPDTAEE 95
++ G + +++F R L D + F VR EE +R+ + V + DT E
Sbjct: 27 SELGELGKVQF-RDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEVKKANISILDTGEN 85
Query: 96 MIEYF----LDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIEL 151
F +D EA + EI NQE EL +L+F + KTQ D + +
Sbjct: 86 PEVPFPRDIIDLEANFEKIEIELKEINTNQEALKRNFLELTELKFILRKTQQFFDEMADP 145
Query: 152 EALQKA--LLEGTE 163
+ L+++ LLE +E
Sbjct: 146 DLLEESSTLLEPSE 159
>sp|Q2J7E7|MDH_FRASC Malate dehydrogenase OS=Frankia sp. (strain CcI3) GN=mdh PE=3 SV=1
Length = 329
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 38 PEGILGS-AQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALR 84
PEG++ S T R E + LE DA +RE + VRE AE R A+R
Sbjct: 277 PEGLISSFPVTASGGRFEIVQGLELDAFSREKIDASVRELAEEREAVR 324
>sp|Q8EQR4|MIAB_OCEIH (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM
11309 / KCTC 3954 / HTE831) GN=miaB PE=3 SV=1
Length = 519
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +DRLIE+ L +G D++ + + + K + K
Sbjct: 300 KIDIPRVRFTTSHPRDFDDRLIEV------LAQGGNLLDHIHLPVQSGSSEILKKMNRKY 353
Query: 188 VKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFM 228
+ LELV + +I TL + I ++Q M
Sbjct: 354 TREEYLELVRKIRIAMPNATLTTDIIVGFPNETEEQFEETM 394
>sp|P16952|SSP5_STRGN Agglutinin receptor OS=Streptococcus gordonii GN=ssp5 PE=1 SV=2
Length = 1500
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 18/206 (8%)
Query: 35 QWDPEGILGSAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAE 94
Q D + L + QT E R + +AEA+EA+E+ V+E + AL+
Sbjct: 224 QQDYQNKLSAYQT------ELARVQKANAEAKEAYEKAVKENTAKNEALKVENEAIKQRN 277
Query: 95 EMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEAL 154
E + + ++ E ++A ++ + N++ + + +L + +++ Q EA
Sbjct: 278 ETAKATYEAAMKQYEADLAAIK-KANEDNDADYQAKLAAYQTELARVQKANAE--AKEAY 334
Query: 155 QKALLEGTEAYDNMQA--DLITARKSLTKILTSKDVK---ATLLELVEQNKIN----RSL 205
KA+ E T +QA + I R K VK A L + + N N ++
Sbjct: 335 DKAVKENTAKNTAIQAENEAIKQRNETAKATYDAAVKKYEADLAAVKQANATNEADYQAK 394
Query: 206 LTLLDENIANAQKSDQKQVAAFMEKV 231
L +A QK++ A + + V
Sbjct: 395 LAAYQTELARVQKANADAKATYEKAV 420
>sp|B1HR59|MIAB_LYSSC (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Lysinibacillus sphaericus (strain C3-41) GN=miaB PE=3
SV=1
Length = 514
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +D LIE+ A + L+E ++ + + + KI+ K
Sbjct: 292 KIDIPRIRFTTSHPRDFDDHLIEVLAKRGNLVE------HIHLPVQSGSNDILKIMARKY 345
Query: 188 VKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQ 223
+ L LVE+ K +TL + I ++Q
Sbjct: 346 TREHFLTLVEKIKAAIPEVTLTTDIIVGYPNETEEQ 381
>sp|Q96CN4|EVI5L_HUMAN EVI5-like protein OS=Homo sapiens GN=EVI5L PE=1 SV=1
Length = 794
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 117 PRLNQEFFSHLKFELGQLRFAVSKT----QDMEDRLIELEALQKAL 158
PRL ++F SHL+ EL Q R ++T ++M+D+++++E +L
Sbjct: 450 PRLTEDFVSHLETELEQSRLRETETLGALREMQDKVLDMEKRNSSL 495
>sp|B7GJM6|MIAB_ANOFW (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1)
GN=miaB PE=3 SV=1
Length = 527
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 124 FSHLKFELGQL------------RFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQAD 171
F+ +K+ LG L RF S +D +DRLIE+ L +G +++
Sbjct: 292 FTDMKYGLGDLMDELRKIDIPRIRFTTSHPRDFDDRLIEV------LAKGGNLVEHIHLP 345
Query: 172 LITARKSLTKILTSKDVKATLLELV 196
+ + + K++ K + LELV
Sbjct: 346 VQSGSSEVLKMMARKYTREQYLELV 370
>sp|O31778|MIAB_BACSU (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus subtilis (strain 168) GN=miaB PE=1 SV=1
Length = 509
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +DRLIE+ L +G D++ + + + K++ K
Sbjct: 290 KIDIPRIRFTTSHPRDFDDRLIEV------LAKGGNLLDHIHLPVQSGSSEVLKLMARKY 343
Query: 188 VKATLLELVEQNK---INRSLLT 207
+ +ELV + K N SL T
Sbjct: 344 DRERYMELVRKIKEAMPNASLTT 366
>sp|A8FDH0|MIAB_BACP2 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacillus pumilus (strain SAFR-032) GN=miaB PE=3 SV=1
Length = 508
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 128 KFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187
K ++ ++RF S +D +D LIE+ L +G D++ + + S+ K++ K
Sbjct: 289 KIDIPRIRFTTSHPRDFDDHLIEV------LAKGGNLLDHIHLPVQSGSSSVLKLMARKY 342
Query: 188 VKATLLELVEQNK---INRSLLT 207
+ L+LV + K N SL T
Sbjct: 343 DRERYLDLVRKIKEAMPNASLTT 365
>sp|Q967U1|PSME_DICDI Proteasome activator 28 OS=Dictyostelium discoideum GN=psmE3 PE=1
SV=1
Length = 225
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 135 RFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLE 194
F V +D+ ++ +LE + +LL+G+E+Y +A L+ KIL KD++A
Sbjct: 123 NFGVDVQEDIITQITKLEEVYTSLLDGSESYFASRASLV------KKILKHKDIEAYRYS 176
Query: 195 L--VEQNKINRSLLTLLD 210
L V++ + R + D
Sbjct: 177 LAQVDEKEFTRFSFSYFD 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,992,969
Number of Sequences: 539616
Number of extensions: 2624602
Number of successful extensions: 13693
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 313
Number of HSP's that attempted gapping in prelim test: 13359
Number of HSP's gapped (non-prelim): 640
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)