Query 026203
Match_columns 241
No_of_seqs 23 out of 25
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 04:59:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05546 She9_MDM33: She9 / Md 80.3 42 0.00092 30.5 11.9 83 150-233 47-135 (207)
2 PF09726 Macoilin: Transmembra 79.0 40 0.00088 34.9 12.7 62 55-117 493-559 (697)
3 PF08031 BBE: Berberine and be 69.3 2 4.3E-05 29.4 0.6 12 36-47 34-45 (47)
4 PF11123 DNA_Packaging_2: DNA 68.8 12 0.00027 29.7 4.9 45 118-169 28-72 (82)
5 PRK09039 hypothetical protein; 57.3 1.2E+02 0.0025 28.6 10.0 25 96-120 39-63 (343)
6 KOG4807 F-actin binding protei 49.7 2E+02 0.0044 29.4 10.7 81 36-116 315-406 (593)
7 TIGR00985 3a0801s04tom mitocho 46.0 73 0.0016 27.4 6.2 18 85-102 75-92 (148)
8 PF04102 SlyX: SlyX; InterPro 45.6 1E+02 0.0023 22.6 6.2 38 144-181 2-39 (69)
9 PHA00425 DNA packaging protein 42.2 72 0.0016 25.7 5.2 70 92-168 2-73 (88)
10 PF09862 DUF2089: Protein of u 41.2 30 0.00065 28.5 3.1 31 173-203 64-105 (113)
11 PF01984 dsDNA_bind: Double-st 39.4 66 0.0014 26.0 4.7 40 172-211 43-92 (107)
12 PRK04239 hypothetical protein; 38.4 57 0.0012 26.9 4.2 40 172-211 48-97 (110)
13 PRK00846 hypothetical protein; 34.6 1.5E+02 0.0032 23.1 5.7 40 140-179 7-46 (77)
14 COG3283 TyrR Transcriptional r 33.3 51 0.0011 33.3 3.8 39 87-129 373-411 (511)
15 PRK02793 phi X174 lysis protei 31.2 2.1E+02 0.0046 21.4 6.0 32 142-173 4-35 (72)
16 PF11328 DUF3130: Protein of u 30.8 1.3E+02 0.0028 24.5 5.0 36 149-184 41-76 (90)
17 PF12729 4HB_MCP_1: Four helix 29.9 2.4E+02 0.0052 21.1 10.6 30 197-226 151-180 (181)
18 PRK04325 hypothetical protein; 29.8 2.3E+02 0.0051 21.3 6.0 31 143-173 6-36 (74)
19 PF13404 HTH_AsnC-type: AsnC-t 29.1 40 0.00088 22.7 1.7 14 199-212 2-15 (42)
20 PF03693 RHH_2: Uncharacterise 28.1 74 0.0016 24.3 3.1 45 118-162 8-58 (80)
21 cd08910 START_STARD2-like Lipi 27.5 50 0.0011 28.4 2.3 21 218-238 187-207 (207)
22 PRK04406 hypothetical protein; 27.4 2.4E+02 0.0052 21.5 5.8 37 143-179 8-44 (75)
23 PRK02119 hypothetical protein; 27.1 2.8E+02 0.006 20.9 6.0 37 143-179 6-42 (73)
24 PRK12705 hypothetical protein; 25.7 7.2E+02 0.016 25.3 16.0 88 144-238 100-189 (508)
25 PF05008 V-SNARE: Vesicle tran 25.6 2.6E+02 0.0056 20.1 6.2 46 123-173 4-49 (79)
26 cd08911 START_STARD7-like Lipi 24.8 44 0.00094 28.6 1.5 18 221-238 190-207 (207)
27 PRK00736 hypothetical protein; 24.3 3E+02 0.0065 20.4 6.0 31 143-173 2-32 (68)
28 COG1390 NtpE Archaeal/vacuolar 24.2 2.1E+02 0.0046 25.1 5.7 39 142-190 67-105 (194)
29 KOG3054 Uncharacterized conser 23.7 1.9E+02 0.004 27.8 5.5 25 37-61 83-110 (299)
30 TIGR02606 antidote_CC2985 puta 23.6 1.3E+02 0.0028 22.3 3.6 20 118-137 5-24 (69)
31 TIGR01807 CM_P2 chorismate mut 22.4 1E+02 0.0022 22.6 2.8 24 199-222 9-32 (76)
32 TIGR01803 CM-like chorismate m 22.2 83 0.0018 23.5 2.4 22 199-220 9-30 (82)
33 cd08870 START_STARD2_7-like Li 22.0 72 0.0016 27.1 2.3 19 220-238 191-209 (209)
34 PF10136 SpecificRecomb: Site- 22.0 6.5E+02 0.014 26.4 9.4 130 105-235 165-333 (643)
35 PRK14063 exodeoxyribonuclease 21.7 2.8E+02 0.006 21.1 5.2 41 147-187 24-64 (76)
36 PF07067 DUF1340: Protein of u 21.3 3E+02 0.0064 25.6 6.1 54 86-140 63-131 (236)
37 PHA02107 hypothetical protein 21.1 1.6E+02 0.0034 26.8 4.3 38 121-158 166-203 (216)
38 PRK00295 hypothetical protein; 20.0 3.7E+02 0.0081 19.9 6.0 31 143-173 2-32 (68)
No 1
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=80.34 E-value=42 Score=30.45 Aligned_cols=83 Identities=20% Similarity=0.333 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHhchhhHHHHHHHHHhHHHHhhhchHH
Q 026203 150 ELEALQKALLEGTEAYDNMQADLITARKSLTKILTSK------DVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQ 223 (241)
Q Consensus 150 ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl~kiLtsk------D~KatlLEMve~nEid~sLlaLLdeNiasA~~a~q~q 223 (241)
+|++.++-+.++-.+|+.+...-...+--+..+|+-| |+.. .-+++.++-.+.--..-++.....|+..-+..
T Consensus 47 ~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleR-FT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~ 125 (207)
T PF05546_consen 47 ELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLER-FTELYRNDHENEQAEEEAKEALEEAEEKVEEA 125 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888999999999999999999999999955 4443 78899999998888899999999999999999
Q ss_pred HHHHHHHHHH
Q 026203 224 VAAFMEKVRA 233 (241)
Q Consensus 224 aA~FMeKvr~ 233 (241)
-.++|+.|..
T Consensus 126 ~~~L~~~Il~ 135 (207)
T PF05546_consen 126 FDDLMRAILT 135 (207)
T ss_pred HHHHHHHHHH
Confidence 8999887753
No 2
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.99 E-value=40 Score=34.95 Aligned_cols=62 Identities=24% Similarity=0.412 Sum_probs=40.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----CCHHHHHHHhhcCchhhhHHHHHhhcc
Q 026203 55 FKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLP-----DTAEEMIEYFLDTEAQELEFEIARLRP 117 (241)
Q Consensus 55 f~r~le~d~e~~ea~erq~~~e~e~r~~~ReaRv~P-----dt~~~LIEyfLdTea~EmEyEiaRcRP 117 (241)
.-|||..+.++|..+|+|..+|+.+|+++.+..-.| .+-.+-=|. +-.-.++||-|+.++|-
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~-~r~r~~~lE~E~~~lr~ 559 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAES-CRQRRRQLESELKKLRR 559 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHH-HHHHHHHHHHHHHHHHH
Confidence 457788888999999999999998877654333333 111122222 34456888888887664
No 3
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=69.32 E-value=2 Score=29.43 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=7.5
Q ss_pred cCCCCcCCCCcc
Q 026203 36 WDPEGILGSAQT 47 (241)
Q Consensus 36 wDPEgl~g~pqt 47 (241)
|||+|+|..||+
T Consensus 34 yDP~n~F~~~q~ 45 (47)
T PF08031_consen 34 YDPDNVFRFPQS 45 (47)
T ss_dssp H-TT-TS-STTS
T ss_pred hCccceeCCCCC
Confidence 999999987764
No 4
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=68.80 E-value=12 Score=29.72 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 118 RLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQ 169 (241)
Q Consensus 118 rLt~~Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~ 169 (241)
+=||-.++.|..-+...+|.++|-.-.+.-|++|++ |.++|+++.
T Consensus 28 kRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~-------aL~ey~~~~ 72 (82)
T PF11123_consen 28 KRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAA-------ALEEYKKMV 72 (82)
T ss_pred hcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHH-------HHHHHHHHc
Confidence 447889999999999999999999888898999876 467777654
No 5
>PRK09039 hypothetical protein; Validated
Probab=57.27 E-value=1.2e+02 Score=28.59 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=19.3
Q ss_pred HHHHhhcCchhhhHHHHHhhccCCC
Q 026203 96 MIEYFLDTEAQELEFEIARLRPRLN 120 (241)
Q Consensus 96 LIEyfLdTea~EmEyEiaRcRPrLt 120 (241)
++.|||+-++...+-|+.+..-.++
T Consensus 39 ~~q~fLs~~i~~~~~eL~~L~~qIa 63 (343)
T PRK09039 39 VAQFFLSREISGKDSALDRLNSQIA 63 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3689999999999888888654443
No 6
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=49.74 E-value=2e+02 Score=29.38 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=59.8
Q ss_pred cCCCCcCCCCccchhh---------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHH--HHHHhhcCc
Q 026203 36 WDPEGILGSAQTGHIA---------RLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEE--MIEYFLDTE 104 (241)
Q Consensus 36 wDPEgl~g~pqtGhIa---------Rr~f~r~le~d~e~~ea~erq~~~e~e~r~~~ReaRv~Pdt~~~--LIEyfLdTe 104 (241)
-||+|-+.....|||- .|-|.-+=++-...-|.++|||+.|-++.+...+.=.--+|.+- -||-+-+.-
T Consensus 315 e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAh 394 (593)
T KOG4807|consen 315 EAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAH 394 (593)
T ss_pred cCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Confidence 5788877655556653 45667777777777888999999888887777665444555543 588888888
Q ss_pred hhhhHHHHHhhc
Q 026203 105 AQELEFEIARLR 116 (241)
Q Consensus 105 a~EmEyEiaRcR 116 (241)
-+|||.|+..-+
T Consensus 395 rEEmeRELeKsq 406 (593)
T KOG4807|consen 395 REEMERELEKSQ 406 (593)
T ss_pred HHHHHHHHHhhh
Confidence 999999998866
No 7
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=45.99 E-value=73 Score=27.38 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=13.3
Q ss_pred hcCCCCCCHHHHHHHhhc
Q 026203 85 QSRVLPDTAEEMIEYFLD 102 (241)
Q Consensus 85 eaRv~Pdt~~~LIEyfLd 102 (241)
..-+.|.|++++=.||++
T Consensus 75 ~~~p~p~d~~e~E~~Fl~ 92 (148)
T TIGR00985 75 AKAPDPTDPSEKEAFFLQ 92 (148)
T ss_pred hcCCCCCCHHHHHHHHHH
Confidence 334567799998888875
No 8
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=45.61 E-value=1e+02 Score=22.62 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 144 MEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTK 181 (241)
Q Consensus 144 ~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl~k 181 (241)
+|+|+.+||..-.+....+|.-++...+--.--.+|.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~ 39 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQR 39 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999888888888877766654444444433
No 9
>PHA00425 DNA packaging protein, small subunit
Probab=42.18 E-value=72 Score=25.74 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=48.0
Q ss_pred CHHHHHHHh--hcCchhhhHHHHHhhccCCCHHHHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 026203 92 TAEEMIEYF--LDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNM 168 (241)
Q Consensus 92 t~~~LIEyf--LdTea~EmEyEiaRcRPrLt~~Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~eg~Ea~Dk~ 168 (241)
+...|+.|+ ||||+-.-=-.=-|---+=||-.++.|-.-+...+|-++|-+-.|.-|++|.+. .|.|++.
T Consensus 2 ~d~~L~k~LemlDTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHkF~isKl~pD~~iLg~la~~-------l~ey~~~ 73 (88)
T PHA00425 2 NDKSLIKFLEMLDTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHKFQISKLQPDENILGGLAAA-------LEEYKEK 73 (88)
T ss_pred chhhHHHHHHHHhHHHHHHHHHHhcCccccChHHHHHHHHHHHHhcccccccCCcHHHHHHHHHH-------HHHHHHh
Confidence 344566553 566653322222233345588999999999999999999999999999998763 5556553
No 10
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=41.25 E-value=30 Score=28.55 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhh-----------cchhHHHHHHHHHhchhhH
Q 026203 173 ITARKSLTKILT-----------SKDVKATLLELVEQNKINR 203 (241)
Q Consensus 173 ~~akerl~kiLt-----------skD~KatlLEMve~nEid~ 203 (241)
=+.|.||-+|+. ..+.+.-||+|+++|||+-
T Consensus 64 PTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~GeIs~ 105 (113)
T PF09862_consen 64 PTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKGEISV 105 (113)
T ss_pred HHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcCCCCH
Confidence 346667766654 3477899999999999974
No 11
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=39.37 E-value=66 Score=25.96 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcc-----hhHHHHHHHHHhchhh-----HHHHHHHHH
Q 026203 172 LITARKSLTKILTSK-----DVKATLLELVEQNKIN-----RSLLTLLDE 211 (241)
Q Consensus 172 l~~akerl~kiLtsk-----D~KatlLEMve~nEid-----~sLlaLLde 211 (241)
+-.|++||..|-.+| .+-..|+.|+.+|.|. ..|+.||++
T Consensus 43 t~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kI~d~~L~~iL~~ 92 (107)
T PF01984_consen 43 TPEARERLNRIKLVKPEKARQVENQLIQLAQSGQLRGKIDDEQLKEILEQ 92 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSS-B-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 345899999988877 4556788899999884 567777764
No 12
>PRK04239 hypothetical protein; Provisional
Probab=38.41 E-value=57 Score=26.91 Aligned_cols=40 Identities=28% Similarity=0.461 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcch-----hHHHHHHHHHhchh-----hHHHHHHHHH
Q 026203 172 LITARKSLTKILTSKD-----VKATLLELVEQNKI-----NRSLLTLLDE 211 (241)
Q Consensus 172 l~~akerl~kiLtskD-----~KatlLEMve~nEi-----d~sLlaLLde 211 (241)
+-.|++||..|-.+|- +-+.|+.|+-+|.| |..|..||+.
T Consensus 48 t~eAreRL~rI~lvkPe~A~~VE~~liqlAq~G~i~~ki~e~~L~~lL~~ 97 (110)
T PRK04239 48 TPEARERLNRIKLVKPEFAEQVEQQLIQLAQSGRIQGPIDDEQLKEILEQ 97 (110)
T ss_pred CHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 4468999999988774 44567888999887 5678888865
No 13
>PRK00846 hypothetical protein; Provisional
Probab=34.57 E-value=1.5e+02 Score=23.09 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=28.8
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 140 KTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSL 179 (241)
Q Consensus 140 rt~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl 179 (241)
++..+++|+.+||.---+....+|.-++...+.-..-.+|
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L 46 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARN 46 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999887777777777777665544444444
No 14
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=33.33 E-value=51 Score=33.33 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHhhcCchhhhHHHHHhhccCCCHHHHHHHHH
Q 026203 87 RVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKF 129 (241)
Q Consensus 87 Rv~Pdt~~~LIEyfLdTea~EmEyEiaRcRPrLt~~Ff~~L~~ 129 (241)
|.-|+|-.-|.|+|+ +.+--|+..-+|+|+++|..+|+.
T Consensus 373 Rer~~di~pL~e~Fv----~q~s~elg~p~pkl~~~~~~~L~~ 411 (511)
T COG3283 373 RERPQDIMPLAELFV----QQFSDELGVPRPKLAADLLTVLTR 411 (511)
T ss_pred ccCcccchHHHHHHH----HHHHHHhCCCCCccCHHHHHHHHH
Confidence 444789999999996 577889999999999999999987
No 15
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.19 E-value=2.1e+02 Score=21.42 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=24.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 142 QDMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (241)
Q Consensus 142 ~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~ 173 (241)
.++|+|+.+||..-......++.-+++..+.-
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq 35 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHE 35 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999988888888877777655443
No 16
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=30.76 E-value=1.3e+02 Score=24.45 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026203 149 IELEALQKALLEGTEAYDNMQADLITARKSLTKILT 184 (241)
Q Consensus 149 ~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl~kiLt 184 (241)
-.+.-|+++|.+.+|.+|..|.=+-+...||.|+=.
T Consensus 41 Nsin~~r~Al~dLv~~Ve~fq~v~~~DA~RlkkmG~ 76 (90)
T PF11328_consen 41 NSINQLRTALIDLVDVVENFQQVVKKDASRLKKMGK 76 (90)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999999988744
No 17
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=29.89 E-value=2.4e+02 Score=21.13 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=21.5
Q ss_pred HhchhhHHHHHHHHHhHHHHhhhchHHHHH
Q 026203 197 EQNKINRSLLTLLDENIANAQKSDQKQVAA 226 (241)
Q Consensus 197 e~nEid~sLlaLLdeNiasA~~a~q~qaA~ 226 (241)
..++++.++-.|.+.|...|+++.+.-.+.
T Consensus 151 ~~~~~~~~l~~l~~~~~~~a~~~~~~~~~~ 180 (181)
T PF12729_consen 151 AFDELRDALDELIEYNNQQAEQAYAEAQAS 180 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345777788888888888888777665443
No 18
>PRK04325 hypothetical protein; Provisional
Probab=29.79 E-value=2.3e+02 Score=21.30 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 143 DMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (241)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~ 173 (241)
.+++|+.+||..-.....-+|--++...+--
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq 36 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQ 36 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999988888888887777655433
No 19
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=29.15 E-value=40 Score=22.71 Aligned_cols=14 Identities=36% Similarity=0.821 Sum_probs=11.6
Q ss_pred chhhHHHHHHHHHh
Q 026203 199 NKINRSLLTLLDEN 212 (241)
Q Consensus 199 nEid~sLlaLLdeN 212 (241)
+++|+.|+.+|++|
T Consensus 2 D~~D~~Il~~Lq~d 15 (42)
T PF13404_consen 2 DELDRKILRLLQED 15 (42)
T ss_dssp -HHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHc
Confidence 57999999999999
No 20
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=28.10 E-value=74 Score=24.27 Aligned_cols=45 Identities=29% Similarity=0.430 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHhchhhhhhc----cCc--hhhhHHHHHHHHHHHHHHHH
Q 026203 118 RLNQEFFSHLKFELGQLRFAVS----KTQ--DMEDRLIELEALQKALLEGT 162 (241)
Q Consensus 118 rLt~~Ff~~L~~ei~~~rfa~~----rt~--~~Edrl~ELEAL~k~l~eg~ 162 (241)
-|||++-++++..+.+=+|+-. +.. ..+++-.++++|+..|.+|.
T Consensus 8 sL~~~~~~~i~~~V~sG~Y~s~SEvvR~aLRlle~~e~~~~~Lr~~l~~g~ 58 (80)
T PF03693_consen 8 SLTPELEAFIEEQVASGRYSSASEVVREALRLLEEREAKLEALREALQEGL 58 (80)
T ss_dssp ---HHHHHHHHHHHCTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999998877776511 111 22334445556666666555
No 21
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=27.48 E-value=50 Score=28.37 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=17.6
Q ss_pred hhchHHHHHHHHHHHHHHhhh
Q 026203 218 KSDQKQVAAFMEKVRAAVLKY 238 (241)
Q Consensus 218 ~a~q~qaA~FMeKvr~AvlKy 238 (241)
...+.+.-.||++++.||.||
T Consensus 187 ~~~~~~~~~~l~~l~ka~~~y 207 (207)
T cd08910 187 WAAKNGVPNFLKDMQKACQNY 207 (207)
T ss_pred HHHHHhhHHHHHHHHHHHhcC
Confidence 345667889999999999998
No 22
>PRK04406 hypothetical protein; Provisional
Probab=27.45 E-value=2.4e+02 Score=21.46 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 143 DMEDRLIELEALQKALLEGTEAYDNMQADLITARKSL 179 (241)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl 179 (241)
.+|+|+.+||..--+...-+|.-++...+--+--.+|
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L 44 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKM 44 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999988888888887777665543333333
No 23
>PRK02119 hypothetical protein; Provisional
Probab=27.06 E-value=2.8e+02 Score=20.91 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 143 DMEDRLIELEALQKALLEGTEAYDNMQADLITARKSL 179 (241)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl 179 (241)
.+|+|+.+||.--......++.-++...+--+--.+|
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L 42 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKM 42 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999888888888877776655443333333
No 24
>PRK12705 hypothetical protein; Provisional
Probab=25.66 E-value=7.2e+02 Score=25.25 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcchhHHHHHHHHHhchhhHHHHHHHHHhHHHHhhhch
Q 026203 144 MEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKI--LTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQ 221 (241)
Q Consensus 144 ~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl~ki--LtskD~KatlLEMve~nEid~sLlaLLdeNiasA~~a~q 221 (241)
.+++..+|+..++.+..-....++. .......|.++ ||+...|..|++.++ ++++...-.++.+-...|+...+
T Consensus 100 l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~ia~lt~~eak~~l~~~~~-~~~~~e~~~~i~~~e~~~~~~a~ 175 (508)
T PRK12705 100 LDNLENQLEEREKALSARELELEEL---EKQLDNELYRVAGLTPEQARKLLLKLLD-AELEEEKAQRVKKIEEEADLEAE 175 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444 33444556666 667889999999987 57888999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhh
Q 026203 222 KQVAAFMEKVRAAVLKY 238 (241)
Q Consensus 222 ~qaA~FMeKvr~AvlKy 238 (241)
..|-.++ ..|+-+|
T Consensus 176 ~~A~~ii---~~aiqr~ 189 (508)
T PRK12705 176 RKAQNIL---AQAMQRI 189 (508)
T ss_pred HHHHHHH---HHHHHHh
Confidence 8887764 3455554
No 25
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.65 E-value=2.6e+02 Score=20.09 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=34.7
Q ss_pred HHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 123 FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (241)
Q Consensus 123 Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~ 173 (241)
.++.|++.|+++. +..+++|..-+...+..|.++-+..++|-..+-
T Consensus 4 l~~~i~~~l~~~~-----~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 4 LTAEIKSKLERIK-----NLSGEQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHGG-----GS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh-----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666664 223489999999999999999999999887643
No 26
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=24.78 E-value=44 Score=28.57 Aligned_cols=18 Identities=39% Similarity=0.731 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 026203 221 QKQVAAFMEKVRAAVLKY 238 (241)
Q Consensus 221 q~qaA~FMeKvr~AvlKy 238 (241)
..+.-+||++++.||.||
T Consensus 190 ~~~~~~~l~~l~~a~~~y 207 (207)
T cd08911 190 MSGMPDFLERLRNAALKY 207 (207)
T ss_pred HhhccHHHHHHHHHHhcC
Confidence 356678999999999888
No 27
>PRK00736 hypothetical protein; Provisional
Probab=24.29 E-value=3e+02 Score=20.39 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 143 DMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (241)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~ 173 (241)
++|+|+.+||.--......+|.-++....--
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq 32 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQW 32 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999887777777777666555433
No 28
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=24.23 E-value=2.1e+02 Score=25.13 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=27.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 026203 142 QDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKA 190 (241)
Q Consensus 142 ~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl~kiLtskD~Ka 190 (241)
...+.|..-|++.++++...+++ ..++|..+.+.++...
T Consensus 67 A~le~r~~~Le~~ee~l~~~~~~----------~~e~L~~i~~~~~~~~ 105 (194)
T COG1390 67 ALLEARRKLLEAKEEILESVFEA----------VEEKLRNIASDPEYES 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHcCcCCcchHH
Confidence 45678888999999998886654 3456666666555544
No 29
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.68 E-value=1.9e+02 Score=27.76 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=17.4
Q ss_pred CCCCcCC---CCccchhhHHHHHHHhhh
Q 026203 37 DPEGILG---SAQTGHIARLEFKRRLEK 61 (241)
Q Consensus 37 DPEgl~g---~pqtGhIaRr~f~r~le~ 61 (241)
|-..+.| .|+.||+.-++=+|+..+
T Consensus 83 e~~~~dg~ee~~e~~~~~~kigkkK~aK 110 (299)
T KOG3054|consen 83 EEGSGDGDEEEPEAGGLQAKIGKKKEAK 110 (299)
T ss_pred cccccccccccccccchhhhhhhHHHHH
Confidence 3344555 699999988887766554
No 30
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=23.63 E-value=1.3e+02 Score=22.28 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHhchhhhh
Q 026203 118 RLNQEFFSHLKFELGQLRFA 137 (241)
Q Consensus 118 rLt~~Ff~~L~~ei~~~rfa 137 (241)
-|||.+-.+++..+.+-||+
T Consensus 5 sL~~~~~~~i~~~V~sG~Y~ 24 (69)
T TIGR02606 5 SLGEHLESFIRSQVQSGRYG 24 (69)
T ss_pred ecCHHHHHHHHHHHHCCCCC
Confidence 37888999999998888877
No 31
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=22.42 E-value=1e+02 Score=22.64 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=18.3
Q ss_pred chhhHHHHHHHHHhHHHHhhhchH
Q 026203 199 NKINRSLLTLLDENIANAQKSDQK 222 (241)
Q Consensus 199 nEid~sLlaLLdeNiasA~~a~q~ 222 (241)
++||+.|++||.+=..-+.+.|..
T Consensus 9 D~iD~~iv~Ll~~R~~~~~~i~~~ 32 (76)
T TIGR01807 9 DAIDDRILDLLSERATYAQAVGEL 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999877666555443
No 32
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=22.21 E-value=83 Score=23.45 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=17.0
Q ss_pred chhhHHHHHHHHHhHHHHhhhc
Q 026203 199 NKINRSLLTLLDENIANAQKSD 220 (241)
Q Consensus 199 nEid~sLlaLLdeNiasA~~a~ 220 (241)
++||+.|++||.+=..-|++.|
T Consensus 9 D~ID~~lv~Ll~~R~~~~~~ia 30 (82)
T TIGR01803 9 DRIDLALVQALGRRMDYVKRAS 30 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999988776555444
No 33
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=22.05 E-value=72 Score=27.07 Aligned_cols=19 Identities=26% Similarity=0.558 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHHHHhhh
Q 026203 220 DQKQVAAFMEKVRAAVLKY 238 (241)
Q Consensus 220 ~q~qaA~FMeKvr~AvlKy 238 (241)
.....-.||++++.||.||
T Consensus 191 ~~~~~~~~l~~l~~a~~~Y 209 (209)
T cd08870 191 VKRGMPGFLKKLENALRKY 209 (209)
T ss_pred HHhhhHHHHHHHHHHHhcC
Confidence 3455677888888888877
No 34
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=21.99 E-value=6.5e+02 Score=26.38 Aligned_cols=130 Identities=22% Similarity=0.267 Sum_probs=81.2
Q ss_pred hhhhHHHHHhhccCCCH--HHHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 026203 105 AQELEFEIARLRPRLNQ--EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQA------------ 170 (241)
Q Consensus 105 a~EmEyEiaRcRPrLt~--~Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~------------ 170 (241)
+..||-|+.|+=|.+.. +=|-.|+.|+....-+........+.. ...-|+..+....+.+|+...
T Consensus 165 a~glepel~r~~p~~~~~~sPF~al~~e~~~~~~~~~~~~~~~~~~-d~~~l~vll~qCr~~v~~v~~~~~~~G~Sv~l~ 243 (643)
T PF10136_consen 165 AEGLEPELRRRMPELEERDSPFVALQREVEAFLEAYRQQDEDPDSE-DLKHLRVLLDQCREQVDRVRKHLEKYGVSVSLV 243 (643)
T ss_pred hcccCHHHHhhCCCCcccCCCHHHHHHHHHHHHHHHhhcccccccc-cHHHHHHHHHHHHHHHHHHHHhccccCeeHHHH
Confidence 45778899999998643 234456777777765555444332222 455666666677777777555
Q ss_pred ----HHHHHHHHHHHHhh-----cchhH----HHHHHHHHhchhhHHHHHHHHHhHHH-----HhhhchH-------HHH
Q 026203 171 ----DLITARKSLTKILT-----SKDVK----ATLLELVEQNKINRSLLTLLDENIAN-----AQKSDQK-------QVA 225 (241)
Q Consensus 171 ----~l~~akerl~kiLt-----skD~K----atlLEMve~nEid~sLlaLLdeNias-----A~~a~q~-------qaA 225 (241)
.|-+--+|+..||. +++.. .-+.++|..+-=.+|+-.|..+|..- .+-++++ ..+
T Consensus 244 ~~L~Rl~Q~L~Ri~~Ll~~l~~~~~~~~~~~~~L~~~Lv~~~~~r~sir~L~~~n~~lLAr~vtE~~s~tGEHYItr~r~ 323 (643)
T PF10136_consen 244 FLLERLRQQLDRIELLLDLLVDDSPDRRRAIVRLFKELVRAECRRNSIRALWRSNTSLLARKVTENASETGEHYITRDRK 323 (643)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCHH
Confidence 35555566655544 33333 34567888888899999999999752 2222222 356
Q ss_pred HHHHHHHHHH
Q 026203 226 AFMEKVRAAV 235 (241)
Q Consensus 226 ~FMeKvr~Av 235 (241)
+|+.=+++|+
T Consensus 324 EY~~M~~sAa 333 (643)
T PF10136_consen 324 EYFAMLRSAA 333 (643)
T ss_pred HHHHHHHHHh
Confidence 7777777664
No 35
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.74 E-value=2.8e+02 Score=21.14 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 026203 147 RLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187 (241)
Q Consensus 147 rl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl~kiLtskD 187 (241)
--+-|+..-+...+|++.+...+..|-.++.++..|+...+
T Consensus 24 ~~l~Leesl~lyeeG~~L~k~C~~~L~~aE~ki~~l~~~~~ 64 (76)
T PRK14063 24 GDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVILGEDG 64 (76)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33457777788889999999999999999999998886543
No 36
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=21.35 E-value=3e+02 Score=25.60 Aligned_cols=54 Identities=33% Similarity=0.548 Sum_probs=44.6
Q ss_pred cCCCCCCHHHHHHHhhcCchhhhHHHH--------HhhccC-------CCHHHHHHHHHHhchhhhhhcc
Q 026203 86 SRVLPDTAEEMIEYFLDTEAQELEFEI--------ARLRPR-------LNQEFFSHLKFELGQLRFAVSK 140 (241)
Q Consensus 86 aRv~Pdt~~~LIEyfLdTea~EmEyEi--------aRcRPr-------Lt~~Ff~~L~~ei~~~rfa~~r 140 (241)
++.-|.|.+++-||+-|.=+++++-=+ .-|||- |+.+.|.+...||..+| |.-|
T Consensus 63 sklSp~Tl~dmreyitdgL~NDlq~yL~~~y~~~~~~~rpd~dk~NAGL~eeLfkq~~~Ei~~Lr-a~hp 131 (236)
T PF07067_consen 63 SKLSPATLDDMREYITDGLANDLQEYLSKHYTSRSVKCRPDTDKTNAGLPEELFKQYREEIEELR-AAHP 131 (236)
T ss_pred hhCChhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccCCCcccccCCCCHHHHHHHHHHHHHHH-HhCc
Confidence 567799999999999999999987533 457885 78899999999999998 3344
No 37
>PHA02107 hypothetical protein
Probab=21.07 E-value=1.6e+02 Score=26.84 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHH
Q 026203 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKAL 158 (241)
Q Consensus 121 ~~Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l 158 (241)
|+--..++---|.+.|+-.|-.+.+..+.||+|++|-+
T Consensus 166 ~~~~KAi~~iRG~~~F~S~Ri~EID~EI~~LQA~RKEi 203 (216)
T PHA02107 166 PETMKAVQLVRGVFHFASVRISEIDEEIKELQARRKEI 203 (216)
T ss_pred HHHHHHHHHHHHHhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 33344566666888899888889999999999999943
No 38
>PRK00295 hypothetical protein; Provisional
Probab=20.00 E-value=3.7e+02 Score=19.89 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 143 DMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (241)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~ 173 (241)
++|+|+.+||.--.....-+|.-++....--
T Consensus 2 ~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq 32 (68)
T PRK00295 2 SLEERVTELESRQAFQDDTIQALNDVLVEQQ 32 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999888888777877776655433
Done!