Query 026203
Match_columns 241
No_of_seqs 23 out of 25
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 08:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l3l_A Tubulin-specific chaper 64.3 12 0.00041 29.1 5.3 64 81-167 17-86 (111)
2 2ygw_A Malonyl-COA decarboxyla 61.7 14 0.00047 35.7 6.2 95 105-211 34-158 (460)
3 2fh0_A Hypothetical 16.0 kDa p 51.8 22 0.00074 26.9 4.7 39 173-211 17-65 (81)
4 1eij_A Hypothetical protein MT 50.3 24 0.00083 26.5 4.7 39 173-211 19-67 (80)
5 2jxn_A Uncharacterized protein 41.7 33 0.0011 27.6 4.6 40 172-211 51-100 (127)
6 2cru_A Programmed cell death p 38.1 43 0.0015 26.7 4.7 40 172-211 48-97 (118)
7 2b5u_A Colicin E3; high resolu 32.8 1.4E+02 0.0049 29.4 8.2 80 67-187 294-373 (551)
8 3kxe_C Antitoxin protein PARD- 29.4 56 0.0019 24.4 3.8 46 118-163 9-60 (88)
9 2hvu_A PDCD5-like protein; YMR 29.1 67 0.0023 25.6 4.4 40 172-211 51-100 (116)
10 3anw_B GINS23, putative unchar 29.1 93 0.0032 26.1 5.5 54 118-184 76-134 (171)
11 3onj_A T-snare VTI1; helix, HA 27.5 1.4E+02 0.0047 22.1 5.7 48 122-174 12-59 (97)
12 2qme_I CRIB domain of the seri 27.1 25 0.00085 22.3 1.3 14 30-43 10-25 (36)
13 1cee_B Wiskott-aldrich syndrom 26.4 23 0.00079 24.6 1.1 13 30-42 17-29 (59)
14 3nr7_A DNA-binding protein H-N 25.3 2E+02 0.0068 21.5 6.2 72 122-205 6-77 (86)
15 1vcs_A Vesicle transport throu 24.1 1.5E+02 0.0052 22.1 5.4 44 123-171 17-60 (102)
16 3efg_A Protein SLYX homolog; x 22.6 2.3E+02 0.0078 20.6 6.5 39 141-179 9-47 (78)
17 2qyw_A Vesicle transport throu 22.5 1.7E+02 0.0059 21.8 5.5 45 123-171 27-71 (102)
18 3ghg_A Fibrinogen alpha chain; 22.5 3.4E+02 0.012 26.9 8.8 77 163-239 89-169 (562)
19 2odb_B Serine/threonine-protei 21.0 29 0.00098 21.8 0.7 16 30-45 10-27 (35)
20 3hot_A Transposable element ma 20.6 1.6E+02 0.0056 24.3 5.4 58 117-186 278-340 (345)
21 2ov2_I Serine/threonine-protei 20.2 30 0.001 21.7 0.7 14 30-43 10-25 (35)
No 1
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=64.28 E-value=12 Score=29.13 Aligned_cols=64 Identities=25% Similarity=0.337 Sum_probs=43.2
Q ss_pred HHhhhcCCCCCCHHHHHHHhhcC---chhhhHHHHHhhccCCCHHHHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHH
Q 026203 81 RALRQSRVLPDTAEEMIEYFLDT---EAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKA 157 (241)
Q Consensus 81 ~~~ReaRv~Pdt~~~LIEyfLdT---ea~EmEyEiaRcRPrLt~~Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~ 157 (241)
...++.+.-..++.+=++||+.+ +...||-.|..|. .+...++-+.++..|+++
T Consensus 17 ~~r~~~~~~~~~~~E~~~~F~~~F~~~~~~Ie~~l~~~~-----------------------~~~~ld~i~~~I~~Lqk~ 73 (111)
T 2l3l_A 17 ERRKQKRQNQEVEKENSHFFVATFARERAAVEELLERAE-----------------------SVERLEEAASRLQGLQKL 73 (111)
T ss_dssp HHHTTSSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHCC-----------------------SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhcCc-----------------------hhhHHHHHHHHHHHHHHH
Confidence 34455555566667889999876 4556777777764 122344556678889999
Q ss_pred HHHHHH---HHHH
Q 026203 158 LLEGTE---AYDN 167 (241)
Q Consensus 158 l~eg~E---a~Dk 167 (241)
+.++.- .||.
T Consensus 74 v~das~fLp~YD~ 86 (111)
T 2l3l_A 74 INDSVFFLAAYDL 86 (111)
T ss_dssp HHHSTTTSCHHHH
T ss_pred HHHHhhhccHHHH
Confidence 999885 7886
No 2
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=61.73 E-value=14 Score=35.65 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=62.3
Q ss_pred hhhhHHHHHhhccCCCHH-----HHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHHH----H-----HHHHHHHHHH
Q 026203 105 AQELEFEIARLRPRLNQE-----FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALL----E-----GTEAYDNMQA 170 (241)
Q Consensus 105 a~EmEyEiaRcRPrLt~~-----Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~----e-----g~Ea~Dk~~~ 170 (241)
++..=-+|...=-.|+++ ||..|.. .|.+.+. ++ -+|++.|.. . ...+|+.+..
T Consensus 34 ~e~~a~~i~~~Y~~l~~~~~r~~fl~~La~-----~f~~d~~-----~v--~~a~~~y~~~~~~~~~~~~~~~~~~~L~~ 101 (460)
T 2ygw_A 34 AEGQCADFVSFYGGLAETAQRAELLGRLAR-----GFGVDHG-----QV--AEQSAGVLHLRQQQREAAVLLQAEDRLRY 101 (460)
T ss_dssp --CHHHHHHHHHHTCCSHHHHHHHHHHHHH-----HSSCCHH-----HH--HHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----HhCCCHH-----HH--HHHHHHHHhcccCCcchhHHHHHHHHHHH
Confidence 333444455555556655 9999988 4454432 22 245555554 1 1248888999
Q ss_pred HHHHHHHHHHHHhhcc--------hhHHHHHHHHHhc--------hhhHHHHHHHHH
Q 026203 171 DLITARKSLTKILTSK--------DVKATLLELVEQN--------KINRSLLTLLDE 211 (241)
Q Consensus 171 ~l~~akerl~kiLtsk--------D~KatlLEMve~n--------Eid~sLlaLLde 211 (241)
++..++.+|.+-+..- |.|+.||++..++ .||..|-.||.+
T Consensus 102 aleP~r~~L~~rln~~pgG~~fLV~mRaDLL~~l~~~~~~~~~L~~Ld~dl~~Llss 158 (460)
T 2ygw_A 102 ALVPRYRGLFHHISKLDGGVRFLVQLRADLLEAQALKLVEGPDVREMNGVLKGMLSE 158 (460)
T ss_dssp HTSCTTHHHHHHHHTSTTHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 9999999998877633 8999999999877 567777777665
No 3
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=51.80 E-value=22 Score=26.87 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcc-----hhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026203 173 ITARKSLTKILTSK-----DVKATLLELVEQNKI-----NRSLLTLLDE 211 (241)
Q Consensus 173 ~~akerl~kiLtsk-----D~KatlLEMve~nEi-----d~sLlaLLde 211 (241)
-.|++||..|-.+| .+-..|+.|+.+|.| |..|..||++
T Consensus 17 ~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~ 65 (81)
T 2fh0_A 17 PQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNG 65 (81)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 45899999998877 455678889999987 5678888875
No 4
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=50.27 E-value=24 Score=26.46 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcch-----hHHHHHHHHHhchh-----hHHHHHHHHH
Q 026203 173 ITARKSLTKILTSKD-----VKATLLELVEQNKI-----NRSLLTLLDE 211 (241)
Q Consensus 173 ~~akerl~kiLtskD-----~KatlLEMve~nEi-----d~sLlaLLde 211 (241)
-.|++||..|--+|- +-..|+.|+-+|.| |..|..||++
T Consensus 19 ~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~ 67 (80)
T 1eij_A 19 PEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKR 67 (80)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 468999999988774 45568889999988 5778888876
No 5
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=41.70 E-value=33 Score=27.57 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhcc-----hhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026203 172 LITARKSLTKILTSK-----DVKATLLELVEQNKI-----NRSLLTLLDE 211 (241)
Q Consensus 172 l~~akerl~kiLtsk-----D~KatlLEMve~nEi-----d~sLlaLLde 211 (241)
+-.|++||..|--+| .+...|+.|+.+|.| |..|..||++
T Consensus 51 ~peAreRL~rI~lVkPekA~~VE~~Li~lAq~Gql~~kVsE~~Lk~iL~~ 100 (127)
T 2jxn_A 51 EPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNG 100 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCBCHHHHHHHHHH
T ss_pred CHHHHHHHhcccccCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 345889998887765 667788999999988 5678888865
No 6
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=38.12 E-value=43 Score=26.66 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhcc-----hhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026203 172 LITARKSLTKILTSK-----DVKATLLELVEQNKI-----NRSLLTLLDE 211 (241)
Q Consensus 172 l~~akerl~kiLtsk-----D~KatlLEMve~nEi-----d~sLlaLLde 211 (241)
+-.|++||..|--+| .+-..|+-|+-+|.| |..|..||+.
T Consensus 48 tpeAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kItee~Lk~lL~~ 97 (118)
T 2cru_A 48 DQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKK 97 (118)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 446899999998877 555678889999988 5778888876
No 7
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=32.84 E-value=1.4e+02 Score=29.38 Aligned_cols=80 Identities=28% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHhhcCchhhhHHHHHhhccCCCHHHHHHHHHHhchhhhhhccCchhhh
Q 026203 67 EAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMED 146 (241)
Q Consensus 67 ea~erq~~~e~e~r~~~ReaRv~Pdt~~~LIEyfLdTea~EmEyEiaRcRPrLt~~Ff~~L~~ei~~~rfa~~rt~~~Ed 146 (241)
+.+++++.||+.++|..+..-++ |+-|.|||-+| .|+.+..-++.
T Consensus 294 ~elkqrqeee~r~~qew~~~hp~--------------~~Aer~~e~a~--------------ael~~a~k~~a------- 338 (551)
T 2b5u_A 294 DQVKQRQDEENRRQQEWDATHPV--------------EAAERNYERAR--------------AELNQANEDVA------- 338 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHH--------------HHHHHHHHHHH--------------HHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHhhhcCcH--------------HHHHHHHHHHH--------------HHHHHHHHHHH-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 026203 147 RLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187 (241)
Q Consensus 147 rl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl~kiLtskD 187 (241)
|+.|.++ ..+.+||-...+|-.+-..|...+.+.|
T Consensus 339 ~~~er~~------~t~~~~~~~~~~~~~~n~~~~~~~~~~~ 373 (551)
T 2b5u_A 339 RNQERQA------KAVQVYNSRKSELDAANKTLADAIAEIK 373 (551)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------HHHHHHHhhHHHHHhhhhHHHHHHHhhh
No 8
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=29.37 E-value=56 Score=24.36 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHhchhhhhh----ccCc--hhhhHHHHHHHHHHHHHHHHH
Q 026203 118 RLNQEFFSHLKFELGQLRFAV----SKTQ--DMEDRLIELEALQKALLEGTE 163 (241)
Q Consensus 118 rLt~~Ff~~L~~ei~~~rfa~----~rt~--~~Edrl~ELEAL~k~l~eg~E 163 (241)
-|+|++-++++..+.+=+|+- -++. ..+++-.++++|+..+.+|.+
T Consensus 9 sL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~l~~Lr~~l~~G~~ 60 (88)
T 3kxe_C 9 VLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAKLAALRAALIEGEE 60 (88)
T ss_dssp CCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 588999999998887777651 1111 223333345666666666653
No 9
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=29.12 E-value=67 Score=25.56 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhcch-----hHHHHHHHHHhchh-----hHHHHHHHHH
Q 026203 172 LITARKSLTKILTSKD-----VKATLLELVEQNKI-----NRSLLTLLDE 211 (241)
Q Consensus 172 l~~akerl~kiLtskD-----~KatlLEMve~nEi-----d~sLlaLLde 211 (241)
+-.|++||..|-.+|- +-..|+-|+-+|.| |..|..||++
T Consensus 51 t~eAreRL~rI~lvkPe~A~~VE~~li~laq~Gql~~ki~e~~L~~lL~~ 100 (116)
T 2hvu_A 51 EPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNG 100 (116)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 3458999999888774 45567779999977 4567788864
No 10
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=29.06 E-value=93 Score=26.08 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHhchhhhhhccCch-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026203 118 RLNQEFFSHLKFELGQLRFAVSKTQD-----MEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILT 184 (241)
Q Consensus 118 rLt~~Ff~~L~~ei~~~rfa~~rt~~-----~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl~kiLt 184 (241)
.|.++|+.-.+.-|..+.-.+.+.++ .+..+.||+.+.+.+.+- -..|+.||++
T Consensus 76 ~LP~dFY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~~L-------------~~~Ri~KIv~ 134 (171)
T 3anw_B 76 LLPEGLYERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLRDL-------------KLIRFNKILK 134 (171)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 36677777777777766655554441 133455666666655443 3568888876
No 11
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=27.50 E-value=1.4e+02 Score=22.14 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=38.1
Q ss_pred HHHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLIT 174 (241)
Q Consensus 122 ~Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~~ 174 (241)
.+++.|+..|+++. ...+|+|..-+...+..+.|+-|..++|--..-.
T Consensus 12 ~~~~~i~~~l~~~~-----~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~ 59 (97)
T 3onj_A 12 TTLEQAKASLAEAP-----SQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNN 59 (97)
T ss_dssp HHHHHHHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777663 4467899999999999999999999998765433
No 12
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=27.10 E-value=25 Score=22.29 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=9.9
Q ss_pred eeeeeccCCC-CcC-C
Q 026203 30 RISCVQWDPE-GIL-G 43 (241)
Q Consensus 30 ~i~~i~wDPE-gl~-g 43 (241)
.++-|||||. |-| |
T Consensus 10 H~~Hvg~d~~tG~~~g 25 (36)
T 2qme_I 10 HTIHVGFDAVTGEFTG 25 (36)
T ss_dssp EEEEECCBTTTTBCC-
T ss_pred CeeEcccCCCCCcccC
Confidence 6888999995 633 5
No 13
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=26.38 E-value=23 Score=24.61 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=10.2
Q ss_pred eeeeeccCCCCcC
Q 026203 30 RISCVQWDPEGIL 42 (241)
Q Consensus 30 ~i~~i~wDPEgl~ 42 (241)
.|+-|||||+.=|
T Consensus 17 Hv~HvG~d~~~gf 29 (59)
T 1cee_B 17 HVSHVGWDPQNGF 29 (59)
T ss_dssp EEEEECCCTTTCC
T ss_pred CcceeccCCCCCc
Confidence 7889999996435
No 14
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=25.25 E-value=2e+02 Score=21.49 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=43.2
Q ss_pred HHHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhchh
Q 026203 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVEQNKI 201 (241)
Q Consensus 122 ~Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl~kiLtskD~KatlLEMve~nEi 201 (241)
+|+..| .+|-++| |..|+-+.|.=-.=++-|..|+.|=.+.+-..+.+ -++|- .|.+.+++|.+..-|
T Consensus 6 ~~lk~L-~niR~LR-A~arel~le~Lee~leKl~~VveERree~~~~~~~---~~er~-------~Kl~~~~e~l~~~GI 73 (86)
T 3nr7_A 6 EALKIL-NNIRTLR-AQARESTLETLEEMLEKLEVVVNERREEESAAAAE---VEERT-------RKLQQYREMLIADGI 73 (86)
T ss_dssp CHHHHH-TCHHHHH-HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHHTCC
T ss_pred HHHHHH-hhHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHHcCC
Confidence 355444 4577777 45555555553333566666766666655544333 23333 345778999999999
Q ss_pred hHHH
Q 026203 202 NRSL 205 (241)
Q Consensus 202 d~sL 205 (241)
|-+=
T Consensus 74 ~~ee 77 (86)
T 3nr7_A 74 DPNE 77 (86)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8753
No 15
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.05 E-value=1.5e+02 Score=22.10 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=34.9
Q ss_pred HHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 123 FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQAD 171 (241)
Q Consensus 123 Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~ 171 (241)
.++.|+..|+++. +..+|+|...+...+..+.|+-|..++|--.
T Consensus 17 l~~~i~~kl~~i~-----~~~geerk~~i~~ie~~l~EA~ell~qMelE 60 (102)
T 1vcs_A 17 LTAEITSKIARVP-----RLPPDEKKQMVANVEKQLEEARELLEQMDLE 60 (102)
T ss_dssp HHHHHHHHHHHGG-----GSCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777653 3356899999999999999999999998764
No 16
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.58 E-value=2.3e+02 Score=20.65 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=28.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 141 TQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSL 179 (241)
Q Consensus 141 t~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~l~~akerl 179 (241)
+..+|+|+.+||.--.+....+|.-++...+--+--.+|
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L 47 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARN 47 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999888888888877776655444333344
No 17
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=22.48 E-value=1.7e+02 Score=21.83 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=34.0
Q ss_pred HHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026203 123 FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQAD 171 (241)
Q Consensus 123 Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~eg~Ea~Dk~~~~ 171 (241)
.++.|+..|+++ ....++|+|...+...+..+.|+-|..++|--.
T Consensus 27 l~~~i~~kl~~i----~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE 71 (102)
T 2qyw_A 27 LLEDLQGVPERL----LGTAGTEEKKKLVRDFDEKQQEANETLAEMEEE 71 (102)
T ss_dssp HHHHHHHHHHHH----HTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667665 222255899999999999999999999998665
No 18
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.46 E-value=3.4e+02 Score=26.86 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHhchhhHHHHHHHHHhHHHHhhhchHHHHHH---HHHHHHHHhhh
Q 026203 163 EAYDNMQADLITARKSLTKILT-SKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAF---MEKVRAAVLKY 238 (241)
Q Consensus 163 Ea~Dk~~~~l~~akerl~kiLt-skD~KatlLEMve~nEid~sLlaLLdeNiasA~~a~q~qaA~F---MeKvr~AvlKy 238 (241)
.-||.++..+.++...-..+=+ |.+++..|..|=++=.=..+.+.+|+.||..-..-=|.=..+- |+.-++.|.||
T Consensus 89 ~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~ 168 (562)
T 3ghg_A 89 NIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRA 168 (562)
T ss_dssp HHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCC
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 3455555555555544443333 4467766665544322222778999999988776655544443 44455677777
Q ss_pred h
Q 026203 239 M 239 (241)
Q Consensus 239 i 239 (241)
+
T Consensus 169 ~ 169 (562)
T 3ghg_A 169 L 169 (562)
T ss_dssp C
T ss_pred h
Confidence 5
No 19
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=21.05 E-value=29 Score=21.82 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=11.7
Q ss_pred eeeeeccCCC-C-cCCCC
Q 026203 30 RISCVQWDPE-G-ILGSA 45 (241)
Q Consensus 30 ~i~~i~wDPE-g-l~g~p 45 (241)
.++-|+|||. | +-|-|
T Consensus 10 H~~Hvg~d~~tG~f~Glp 27 (35)
T 2odb_B 10 HRVHTSFDPKEGKFVGLP 27 (35)
T ss_dssp EEEEEEEETTTTEEESCC
T ss_pred CeeeeeECCCCCcccCCC
Confidence 6888999997 7 44633
No 20
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=20.56 E-value=1.6e+02 Score=24.32 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=35.3
Q ss_pred cCCCH---HHHHHHHHHhchhhhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcc
Q 026203 117 PRLNQ---EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDN--MQADLITARKSLTKILTSK 186 (241)
Q Consensus 117 PrLt~---~Ff~~L~~ei~~~rfa~~rt~~~Edrl~ELEAL~k~l~eg~Ea~Dk--~~~~l~~akerl~kiLtsk 186 (241)
|-||| -||.+|+..+..-.|. -++.|.+++.++++.++. .+.-..+-..|+.+.+.++
T Consensus 278 pdlnpie~~~~~~lk~~~~~~~~~------------~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~r~~~~i~~~ 340 (345)
T 3hot_A 278 PDLAPSDYHLFASMGHALAEQRFD------------SYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASD 340 (345)
T ss_dssp GGGCHHHHTHHHHHHHHHTTCCCS------------SHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccccchhhHHHHHHhccccCC------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666 4899999877433321 256777888888775543 2333344456666666543
No 21
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=20.24 E-value=30 Score=21.73 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=10.7
Q ss_pred eeeeeccCCC-C-cCC
Q 026203 30 RISCVQWDPE-G-ILG 43 (241)
Q Consensus 30 ~i~~i~wDPE-g-l~g 43 (241)
.++-|+|||+ | +-|
T Consensus 10 H~~Hvg~d~~tg~~~G 25 (35)
T 2ov2_I 10 HRVHTGFDQHEQKFTG 25 (35)
T ss_dssp EEEEEEEETTTTEEES
T ss_pred CeeeeeeCCCCCcccC
Confidence 6788999996 4 446
Done!