Query 026203
Match_columns 241
No_of_seqs 23 out of 25
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 08:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026203.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026203hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2csba1 a.60.2.4 (A:351-409) T 66.2 0.76 5.5E-05 31.3 0.6 28 87-114 11-46 (59)
2 d1eija_ a.5.6.1 (A:) Hypotheti 48.6 13 0.00094 25.8 4.7 39 173-211 19-67 (72)
3 d2crua1 a.5.6.1 (A:8-112) Prog 43.3 15 0.0011 26.9 4.5 40 172-211 41-90 (105)
4 d1n1qa_ a.25.1.1 (A:) Dodecame 29.6 84 0.0061 22.0 6.8 52 185-239 90-141 (149)
5 d1umna_ a.25.1.1 (A:) Dodecame 24.2 1.1E+02 0.008 21.4 6.6 50 187-239 89-138 (151)
6 d1wa8b1 a.25.3.1 (B:602-695) E 22.9 96 0.007 20.3 5.7 42 143-184 23-69 (94)
7 d2cyya1 a.4.5.32 (A:5-64) Puta 22.5 17 0.0012 22.9 1.5 14 199-212 2-15 (60)
8 d1zuja1 a.25.1.1 (A:6-173) Dod 22.3 88 0.0064 23.4 6.0 50 187-239 105-154 (168)
9 d2isya2 a.76.1.1 (A:65-140) Ir 20.4 55 0.004 21.7 3.9 40 96-135 17-60 (76)
10 d1ji4a_ a.25.1.1 (A:) Dodecame 20.3 1.3E+02 0.0095 20.8 6.6 51 186-239 86-136 (144)
No 1
>d2csba1 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=66.23 E-value=0.76 Score=31.28 Aligned_cols=28 Identities=46% Similarity=0.787 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHh------hcCchhhhH--HHHHh
Q 026203 87 RVLPDTAEEMIEYF------LDTEAQELE--FEIAR 114 (241)
Q Consensus 87 Rv~Pdt~~~LIEyf------LdTea~EmE--yEiaR 114 (241)
-.-||..++||||| |-|+.+||| ||-.|
T Consensus 11 glspdaadeliehfesiagilatdleeiermyeegr 46 (59)
T d2csba1 11 GLSPDAADELIEHFESIAGILATDLEEIERMYEEGR 46 (59)
T ss_dssp CCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHHTS
T ss_pred CCCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHccc
Confidence 34588899999998 668888887 45444
No 2
>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=48.64 E-value=13 Score=25.77 Aligned_cols=39 Identities=21% Similarity=0.430 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcc-----hhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026203 173 ITARKSLTKILTSK-----DVKATLLELVEQNKI-----NRSLLTLLDE 211 (241)
Q Consensus 173 ~~akerl~kiLtsk-----D~KatlLEMve~nEi-----d~sLlaLLde 211 (241)
-.|++||..|--+| .+.+.|+.|+.+|.| |..|..||++
T Consensus 19 ~eAreRL~~i~lvkPekA~~vE~~liqlaq~G~i~~kisd~~L~~iL~~ 67 (72)
T d1eija_ 19 PEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKR 67 (72)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 35899999998877 455678889999887 6677777764
No 3
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.30 E-value=15 Score=26.94 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcc-----hhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026203 172 LITARKSLTKILTSK-----DVKATLLELVEQNKI-----NRSLLTLLDE 211 (241)
Q Consensus 172 l~~akerl~kiLtsk-----D~KatlLEMve~nEi-----d~sLlaLLde 211 (241)
+-.|++||..|--+| .+.+.|+.|+.+|.| |..|..||+.
T Consensus 41 t~eAreRL~rI~lvkPe~A~~VE~~liqlaq~G~i~~kisd~~Lk~iL~~ 90 (105)
T d2crua1 41 DQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKK 90 (105)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHhhcccCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 346899999888766 566788899999988 6778888875
No 4
>d1n1qa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus brevis, Dps [TaxId: 1393]}
Probab=29.56 E-value=84 Score=21.97 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=42.0
Q ss_pred cchhHHHHHHHHHhchhhHHHHHHHHHhHHHHhhhchHHHHHHHHHHHHHHhhhh
Q 026203 185 SKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEKVRAAVLKYM 239 (241)
Q Consensus 185 skD~KatlLEMve~nEid~sLlaLLdeNiasA~~a~q~qaA~FMeKvr~AvlKyi 239 (241)
..|.+.+|.+.++.. ..++..+.+-|.-|.++|+..-++++..+-...-|++
T Consensus 90 ~~~~~~~l~~~l~~~---~~~~~~~~~~~~~a~~~~D~~t~dll~~i~~~~Ek~~ 141 (149)
T d1n1qa_ 90 GESAAEMVSSVVNDF---VDLVGELKVARDVADEADDEATADMLDAIEAGLEKHV 141 (149)
T ss_dssp CCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 457777777776643 3477888999999999999999999999988877764
No 5
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus suis [TaxId: 1307]}
Probab=24.16 E-value=1.1e+02 Score=21.36 Aligned_cols=50 Identities=16% Similarity=0.263 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHhchhhHHHHHHHHHhHHHHhhhchHHHHHHHHHHHHHHhhhh
Q 026203 187 DVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEKVRAAVLKYM 239 (241)
Q Consensus 187 D~KatlLEMve~nEid~sLlaLLdeNiasA~~a~q~qaA~FMeKvr~AvlKyi 239 (241)
|.+.+|-.+++. ...+...+.+-|.-|.+.|+..-+++|..+-...-|++
T Consensus 89 ~~~~ml~~~~~~---~~~~~~~~~~~~~~a~~~~D~~t~dll~~i~~~~Ek~~ 138 (151)
T d1umna_ 89 TIEEQLARVVEV---FRYLAALFQKGFDVSDEEGDSVTNDIFNVAKASIEKHI 138 (151)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 566666666643 35678888999999999999999999999988877764
No 6
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.89 E-value=96 Score=20.29 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026203 143 DMEDRLIELEALQKALL-----EGTEAYDNMQADLITARKSLTKILT 184 (241)
Q Consensus 143 ~~Edrl~ELEAL~k~l~-----eg~Ea~Dk~~~~l~~akerl~kiLt 184 (241)
.++..|.+|+..-..|. .+-++|+..+...-.+-..|..+|.
T Consensus 23 ~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~L~ 69 (94)
T d1wa8b1 23 SIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQ 69 (94)
T ss_dssp HHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444444433333 2337999999999988888888886
No 7
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.49 E-value=17 Score=22.86 Aligned_cols=14 Identities=14% Similarity=0.688 Sum_probs=13.0
Q ss_pred chhhHHHHHHHHHh
Q 026203 199 NKINRSLLTLLDEN 212 (241)
Q Consensus 199 nEid~sLlaLLdeN 212 (241)
+++|+.||.+|++|
T Consensus 2 D~~D~~Il~~L~~n 15 (60)
T d2cyya1 2 DEIDKKIIKILQND 15 (60)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHc
Confidence 68999999999999
No 8
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsA [TaxId: 1358]}
Probab=22.35 E-value=88 Score=23.40 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhchhhHHHHHHHHHhHHHHhhhchHHHHHHHHHHHHHHhhhh
Q 026203 187 DVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEKVRAAVLKYM 239 (241)
Q Consensus 187 D~KatlLEMve~nEid~sLlaLLdeNiasA~~a~q~qaA~FMeKvr~AvlKyi 239 (241)
+.+.+|-+++...+ .+...+.+-|..|.++|+..-+.+|..+.+..-|.|
T Consensus 105 s~~~ml~~li~d~~---~~~~~~~~~i~~A~~~~D~~t~~~l~~~l~~~ek~i 154 (168)
T d1zuja1 105 TDEALIENFINDFQ---NQNLFIGRAIKLAQKEEKFSLELAIRKLYGYNLSII 154 (168)
T ss_dssp CHHHHHHHHHHHHH---HHHHHHHHHTHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45556666665543 688889999999999999999999999988877765
No 9
>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.44 E-value=55 Score=21.71 Aligned_cols=40 Identities=20% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHHHhh-c---CchhhhHHHHHhhccCCCHHHHHHHHHHhchhh
Q 026203 96 MIEYFL-D---TEAQELEFEIARLRPRLNQEFFSHLKFELGQLR 135 (241)
Q Consensus 96 LIEyfL-d---Tea~EmEyEiaRcRPrLt~~Ff~~L~~ei~~~r 135 (241)
|+|.|| + -+..+.+-+.-++-.-++++++..|..-++..+
T Consensus 17 lle~fL~~~lgv~~~~a~~~A~~iEH~is~e~~~~L~~~l~~p~ 60 (76)
T d2isya2 17 LAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPT 60 (76)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhccCCHHHHHHHHHHhCCCC
Confidence 666666 3 566788999999999999999999999887664
No 10
>d1ji4a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter pylori, Nap [TaxId: 210]}
Probab=20.27 E-value=1.3e+02 Score=20.81 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHhchhhHHHHHHHHHhHHHHhhhchHHHHHHHHHHHHHHhhhh
Q 026203 186 KDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEKVRAAVLKYM 239 (241)
Q Consensus 186 kD~KatlLEMve~nEid~sLlaLLdeNiasA~~a~q~qaA~FMeKvr~AvlKyi 239 (241)
.|.+.+|-++++.+ ..++..+.+-|..|.+.|+..-+.++..+-...-|++
T Consensus 86 ~~~~~ml~~l~~~~---~~~~~~~~~~~~~a~~~~D~~t~~ll~~~~~~~ek~~ 136 (144)
T d1ji4a_ 86 FHSKDIFKEILEDY---KYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSI 136 (144)
T ss_dssp EEHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 47888888888774 5788999999999999999999999999988877764
Done!