Your job contains 1 sequence.
>026204
MELVELEFNQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYED
DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSS
SISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS
GRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTH
Q
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026204
(241 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2204355 - symbol:AT1G76050 species:3702 "Arabi... 844 2.7e-84 1
TIGR_CMR|GSU_0082 - symbol:GSU_0082 "ribosomal large subu... 272 3.2e-41 2
TIGR_CMR|CHY_1505 - symbol:CHY_1505 "ribosomal large subu... 219 6.4e-37 2
TIGR_CMR|DET_1375 - symbol:DET_1375 "ribosomal large subu... 249 1.3e-36 2
TIGR_CMR|SPO_1408 - symbol:SPO_1408 "ribosomal large subu... 206 1.3e-32 2
UNIPROTKB|Q4K5V9 - symbol:rluD "Pseudouridine synthase" s... 183 3.9e-31 2
TIGR_CMR|CPS_3915 - symbol:CPS_3915 "ribosomal large subu... 182 2.4e-28 2
UNIPROTKB|P33643 - symbol:rluD "23S rRNA pseudouridine sy... 171 2.8e-28 2
UNIPROTKB|Q9KU20 - symbol:rluD "Ribosomal large subunit p... 161 1.7e-25 2
TIGR_CMR|VC_0709 - symbol:VC_0709 "ribosomal large subuni... 161 1.7e-25 2
TIGR_CMR|NSE_0146 - symbol:NSE_0146 "ribosomal large subu... 183 2.9e-25 2
TIGR_CMR|CBU_0757 - symbol:CBU_0757 "ribosomal large subu... 171 8.2e-25 2
TIGR_CMR|APH_0362 - symbol:APH_0362 "ribosomal large subu... 167 4.6e-24 2
TIGR_CMR|ECH_0486 - symbol:ECH_0486 "ribosomal large subu... 185 9.5e-24 2
TIGR_CMR|CJE_1416 - symbol:CJE_1416 "ribosomal large subu... 177 2.3e-23 2
TIGR_CMR|GSU_3353 - symbol:GSU_3353 "RNA pseudouridine sy... 178 6.3e-19 2
TIGR_CMR|CPS_0536 - symbol:CPS_0536 "RNA pseudouridine sy... 157 1.6e-14 2
DICTYBASE|DDB_G0280463 - symbol:DDB_G0280463 "Ribosomal l... 163 9.9e-13 2
ZFIN|ZDB-GENE-040801-238 - symbol:zgc:92006 "zgc:92006" s... 150 5.5e-12 2
TIGR_CMR|CHY_1119 - symbol:CHY_1119 "ribosomal large subu... 127 6.9e-12 2
TIGR_CMR|ECH_0774 - symbol:ECH_0774 "ribosomal large subu... 140 1.3e-11 2
UNIPROTKB|P0AA37 - symbol:rluA species:83333 "Escherichia... 135 2.7e-11 2
UNIPROTKB|Q9KP71 - symbol:rluA "Ribosomal large subunit p... 138 3.1e-11 2
TIGR_CMR|VC_2505 - symbol:VC_2505 "ribosomal large subuni... 138 3.1e-11 2
UNIPROTKB|Q9KQH0 - symbol:rluC "Ribosomal large subunit p... 134 3.4e-11 2
TIGR_CMR|VC_2028 - symbol:VC_2028 "ribosomal large subuni... 134 3.4e-11 2
TIGR_CMR|SPO_3392 - symbol:SPO_3392 "ribosomal large subu... 127 9.2e-11 2
UNIPROTKB|Q9KN61 - symbol:VC_A0104 "Pseudouridine synthas... 127 9.5e-11 2
TIGR_CMR|VC_A0104 - symbol:VC_A0104 "ribosomal large subu... 127 9.5e-11 2
TIGR_CMR|APH_0549 - symbol:APH_0549 "ribosomal large subu... 135 9.9e-11 2
TIGR_CMR|CPS_4520 - symbol:CPS_4520 "ribosomal large subu... 133 1.2e-10 2
TIGR_CMR|CPS_2290 - symbol:CPS_2290 "ribosomal large subu... 130 1.6e-10 2
TIGR_CMR|SPO_0516 - symbol:SPO_0516 "ribosomal large subu... 137 5.4e-10 2
SGD|S000005427 - symbol:RIB2 "Bifunctional DRAP deaminase... 114 7.5e-10 2
MGI|MGI:1919239 - symbol:Rpusd4 "RNA pseudouridylate synt... 125 6.0e-09 2
UNIPROTKB|Q4KFS5 - symbol:rluC "Pseudouridine synthase" s... 122 9.9e-09 2
SGD|S000002194 - symbol:PUS9 "Mitochondrial tRNA:pseudour... 105 1.6e-08 2
UNIPROTKB|E1BYI6 - symbol:RPUSD4 "Uncharacterized protein... 120 1.7e-08 2
UNIPROTKB|P0AA39 - symbol:rluC species:83333 "Escherichia... 109 2.7e-08 2
UNIPROTKB|E9PML2 - symbol:RPUSD4 "RNA pseudouridylate syn... 104 1.3e-07 3
TIGR_CMR|CBU_0487 - symbol:CBU_0487 "ribosomal large subu... 111 4.6e-07 2
UNIPROTKB|Q96CM3 - symbol:RPUSD4 "RNA pseudouridylate syn... 110 4.8e-07 2
RGD|1311268 - symbol:Rpusd4 "RNA pseudouridylate synthase... 110 7.6e-07 2
TIGR_CMR|GSU_0671 - symbol:GSU_0671 "ribosomal large subu... 101 1.1e-06 2
TIGR_CMR|GSU_3160 - symbol:GSU_3160 "RNA pseudouridine sy... 107 2.0e-06 2
UNIPROTKB|F1S6H1 - symbol:LOC100737111 "Uncharacterized p... 102 3.6e-06 2
TIGR_CMR|CJE_0808 - symbol:CJE_0808 "RNA pseudouridine sy... 109 3.7e-06 2
TIGR_CMR|NSE_0556 - symbol:NSE_0556 "ribosomal large subu... 111 3.7e-06 2
DICTYBASE|DDB_G0285543 - symbol:DDB_G0285543 species:4468... 80 4.5e-06 3
UNIPROTKB|E2R2N3 - symbol:RPUSD4 "Uncharacterized protein... 104 5.4e-06 2
WB|WBGene00019498 - symbol:K07E8.7 species:6239 "Caenorha... 102 8.6e-06 2
UNIPROTKB|F6XEH2 - symbol:RPUSD4 "Uncharacterized protein... 104 1.1e-05 2
UNIPROTKB|Q9KRH4 - symbol:VC1668 "Pseudouridine synthase"... 112 1.5e-05 2
TIGR_CMR|VC_1668 - symbol:VC_1668 "pseudouridine synthase... 112 1.5e-05 2
UNIPROTKB|Q9KTL4 - symbol:truC "tRNA pseudouridine syntha... 87 1.7e-05 2
TIGR_CMR|VC_0888 - symbol:VC_0888 "pseudouridine synthase... 87 1.7e-05 2
UNIPROTKB|Q5E9Z1 - symbol:RPUSD4 "RNA pseudouridylate syn... 98 2.8e-05 2
UNIPROTKB|G4MYD1 - symbol:MGG_08117 "DRAP deaminase" spec... 96 3.8e-05 2
MGI|MGI:1919186 - symbol:Rpusd1 "RNA pseudouridylate synt... 98 6.0e-05 2
CGD|CAL0004292 - symbol:orf19.2788 species:5476 "Candida ... 88 7.8e-05 2
UNIPROTKB|Q59PV5 - symbol:CaO19.2788 "Putative uncharacte... 88 7.8e-05 2
RGD|1304934 - symbol:Rpusd1 "RNA pseudouridylate synthase... 95 0.00011 2
SGD|S000003401 - symbol:PUS6 "tRNA:pseudouridine synthase... 82 0.00012 2
FB|FBgn0051719 - symbol:RluA-1 "RluA-1" species:7227 "Dro... 87 0.00015 2
UNIPROTKB|E2R7K0 - symbol:RPUSD1 "Uncharacterized protein... 95 0.00021 2
TIGR_CMR|CJE_0022 - symbol:CJE_0022 "RNA pseudouridine sy... 103 0.00023 2
TAIR|locus:2090689 - symbol:AT3G19440 species:3702 "Arabi... 115 0.00030 1
POMBASE|SPAC18B11.02c - symbol:SPAC18B11.02c "tRNA pseudo... 78 0.00034 2
UNIPROTKB|F1P0G3 - symbol:RPUSD2 "Uncharacterized protein... 80 0.00036 2
FB|FBgn0032256 - symbol:RluA-2 "RluA-2" species:7227 "Dro... 86 0.00076 2
CGD|CAL0002400 - symbol:orf19.3177 species:5476 "Candida ... 82 0.00080 2
>TAIR|locus:2204355 [details] [associations]
symbol:AT1G76050 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 EMBL:AC007396 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 KO:K15452 EMBL:BX816325
EMBL:AK117781 IPI:IPI00528093 IPI:IPI00545612 RefSeq:NP_177732.2
RefSeq:NP_974151.1 UniGene:At.34707 UniGene:At.68569
UniGene:At.71876 ProteinModelPortal:Q3ECD0 SMR:Q3ECD0 STRING:Q3ECD0
PRIDE:Q3ECD0 EnsemblPlants:AT1G76050.2 GeneID:843937
KEGG:ath:AT1G76050 TAIR:At1g76050 InParanoid:Q3ECD0 OMA:GHCTDLS
PhylomeDB:Q3ECD0 ProtClustDB:CLSN2918520 Genevestigator:Q3ECD0
TIGRFAMs:TIGR00005 Uniprot:Q3ECD0
Length = 430
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 168/226 (74%), Positives = 181/226 (80%)
Query: 20 MDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
+DK VSHNVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVNKPAHMVVHPAPG
Sbjct: 116 VDK--VSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPG 173
Query: 80 NATGTLVNGILHHCSLPTLASSNQXXXXXXXXXXXXX----XXXXXXXGASIRPGIVHRL 135
N TGTLVNGILHHCSLP + SN AS+RPGIVHRL
Sbjct: 174 NPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRL 233
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DKGT+GLLVVAKDEHSHAHL+EQFKLHTIERVY+SLT+GVPS GRIE+PI RD +NRI
Sbjct: 234 DKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRI 293
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RMAAIPG + G+ARHAASRYKVIE AGGGSALVEWRLETGRTHQ
Sbjct: 294 RMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQ 339
>TIGR_CMR|GSU_0082 [details] [associations]
symbol:GSU_0082 "ribosomal large subunit pseudouridine
synthase D" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:NP_951144.1
ProteinModelPortal:Q74H11 GeneID:2688326 KEGG:gsu:GSU0082
PATRIC:22022908 ProtClustDB:CLSK827625
BioCyc:GSUL243231:GH27-34-MONOMER Uniprot:Q74H11
Length = 322
Score = 272 (100.8 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 58/118 (49%), Positives = 77/118 (65%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
G IRPGIVHR+DK TSG+LVVAK + +H LS QF HT++RVY++L G P + GRI
Sbjct: 130 GGEIRPGIVHRIDKDTSGVLVVAKSDRAHESLSRQFHDHTVKRVYLALVYGSPREDKGRI 189
Query: 184 EVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
E I R P +R +M+ G+ +HG +HA + ++V G L+ RLETGRTHQ
Sbjct: 190 EGAIGRHPTDRKKMS---GAARHG--KHAVTHWRVAARFTG--VTLLRLRLETGRTHQ 240
Score = 182 (69.1 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 38/75 (50%), Positives = 52/75 (69%)
Query: 21 DKLSV-SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
D+L S ++GG+ V T+ P EAE+IPL +++ED +V+VV+KPA MVVHPA G
Sbjct: 50 DRLEKPSLKLRGGERVVVTVPPPAPAVPEAEEIPLVVLHEDGDVVVVDKPAGMVVHPAAG 109
Query: 80 NATGTLVNGILHHCS 94
N GTLVN +L HC+
Sbjct: 110 NPGGTLVNALLAHCT 124
>TIGR_CMR|CHY_1505 [details] [associations]
symbol:CHY_1505 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
RefSeq:YP_360337.1 ProteinModelPortal:Q3ABZ7 STRING:Q3ABZ7
GeneID:3727865 KEGG:chy:CHY_1505 PATRIC:21276139
BioCyc:CHYD246194:GJCN-1504-MONOMER Uniprot:Q3ABZ7
Length = 305
Score = 219 (82.2 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 53/118 (44%), Positives = 71/118 (60%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
G +RPGIVHRLDK TSGLLVVAK++ +H L+EQ K R Y ++ G G I
Sbjct: 128 GGVLRPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKNKEGII 187
Query: 184 EVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++PI R P +R +MA + SN + A + YKV+E G L++ +L TGRTHQ
Sbjct: 188 DLPIGRHPRDRQKMAVV--SN----GKTAQTVYKVLEEF-NKGFTLIQAKLLTGRTHQ 238
Score = 194 (73.4 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 36/68 (52%), Positives = 51/68 (75%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V+GG+++ + + L + E+IPLDIVYED++++VVNK A MVVHPA GN GTL
Sbjct: 54 SYKVRGGEIIAVLLPPPRELSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTL 113
Query: 86 VNGILHHC 93
VN +L+HC
Sbjct: 114 VNALLYHC 121
>TIGR_CMR|DET_1375 [details] [associations]
symbol:DET_1375 "ribosomal large subunit pseudouridine
synthase, RluA family" species:243164 "Dehalococcoides ethenogenes
195" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_182086.1
ProteinModelPortal:Q3Z6R3 STRING:Q3Z6R3 GeneID:3229324
KEGG:det:DET1375 PATRIC:21609777 OMA:DTITIEI ProtClustDB:CLSK836936
BioCyc:DETH243164:GJNF-1376-MONOMER Uniprot:Q3Z6R3
Length = 300
Score = 249 (92.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 56/115 (48%), Positives = 76/115 (66%)
Query: 127 IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVP 186
+RPGIVHRLDK TSGLL+VAK+ + A+LS QFK T+ + Y++L G + G IE P
Sbjct: 127 LRPGIVHRLDKDTSGLLLVAKNREALANLSAQFKERTVRKYYLTLVQGELHPAEGFIEAP 186
Query: 187 ISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ RDP NR ++A + SN R A + YKV+ + G +L+E +LETGRTHQ
Sbjct: 187 LGRDPQNRQKIAVV--SN----GRPARTGYKVLRYIQG--YSLLEVKLETGRTHQ 233
Score = 161 (61.7 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD + I P +AEDIPL+I+++D ++L++NKP + VHPAPG+ TL
Sbjct: 50 SLKLKNGDTITIEIPPETPPELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTL 109
Query: 86 VNGIL 90
+NG+L
Sbjct: 110 INGVL 114
>TIGR_CMR|SPO_1408 [details] [associations]
symbol:SPO_1408 "ribosomal large subunit pseudouridine
synthase D" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_166649.1
ProteinModelPortal:Q5LTK6 GeneID:3193242 KEGG:sil:SPO1408
PATRIC:23376131 OMA:CAHIGHP ProtClustDB:CLSK933544 Uniprot:Q5LTK6
Length = 342
Score = 206 (77.6 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 56/131 (42%), Positives = 74/131 (56%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
G RPGIVHR+DK TSGLLVVAK + +H L+ QF H+ ER Y +L GVP S R+
Sbjct: 132 GGVKRPGIVHRIDKDTSGLLVVAKSDAAHHGLAAQFAAHSAERHYTALCYGVPDGSDPRL 191
Query: 184 E-VP-ISRDPNNRIRMAAI----PGSNK------HGQARHAASRYKVIEILAGGGS-ALV 230
V S +P N +R+ P + HG RHA +R +V+E + +L+
Sbjct: 192 RGVKGASFEPGNILRLTTQLTRHPTDRQRQAVVFHG-GRHAVTRARVVESFGQPAAVSLI 250
Query: 231 EWRLETGRTHQ 241
+ LETGRTHQ
Sbjct: 251 DCWLETGRTHQ 261
Score = 171 (65.3 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G V ++E + E IPL +VYEDD+++V++KPA MVVHPAPG +GTLVN +L
Sbjct: 63 GAQVAIALTEAEESHIAPEAIPLVVVYEDDDLIVIDKPAGMVVHPAPGTPSGTLVNALLA 122
Query: 92 HC 93
HC
Sbjct: 123 HC 124
>UNIPROTKB|Q4K5V9 [details] [associations]
symbol:rluD "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GO:GO:0006364
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
RefSeq:YP_262374.2 GeneID:3479698 KEGG:pfl:PFL_5306 PATRIC:19880091
ProtClustDB:CLSK868730 BioCyc:PFLU220664:GIX8-5347-MONOMER
Uniprot:Q4K5V9
Length = 320
Score = 183 (69.5 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 46/114 (40%), Positives = 62/114 (54%)
Query: 128 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 187
R GIVHRLDK T+GL+VVAK + L Q + ++ R+Y + GV + + G+I PI
Sbjct: 130 RAGIVHRLDKDTTGLMVVAKTIQAQTQLVAQLQSRSVSRIYECIVIGVVT-AGGKINAPI 188
Query: 188 SRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R R RMA + G + A S Y+V+E V +LETGRTHQ
Sbjct: 189 GRHGQQRQRMAVMEGG------KQAVSHYRVLERFRSHTHVRV--KLETGRTHQ 234
Score = 181 (68.8 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V GG ++ T + A+DI LDIVYEDD++LV+NKPA +VVHPA G+A GTL+N
Sbjct: 58 VHGGSILELTAEQEAQGEWIAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNA 117
Query: 89 ILHH 92
+LHH
Sbjct: 118 LLHH 121
>TIGR_CMR|CPS_3915 [details] [associations]
symbol:CPS_3915 "ribosomal large subunit pseudouridine
synthase D" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT
ProtClustDB:PRK11180 RefSeq:YP_270573.1 ProteinModelPortal:Q47X97
SMR:Q47X97 STRING:Q47X97 GeneID:3521018 KEGG:cps:CPS_3915
PATRIC:21470721 BioCyc:CPSY167879:GI48-3928-MONOMER Uniprot:Q47X97
Length = 324
Score = 182 (69.1 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 31 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 90
GG+ ++ +R EA++IPL+IVYEDD +LV+NKPA +VVHP GN GTL+N +L
Sbjct: 61 GGEEIDINAKVEAEIRFEAQNIPLNIVYEDDYILVINKPAGLVVHPGAGNPDGTLLNALL 120
Query: 91 HH 92
HH
Sbjct: 121 HH 122
Score = 156 (60.0 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 44/114 (38%), Positives = 64/114 (56%)
Query: 128 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 187
R GIVHRLDK T+GL+VVAK + +L + +L I R Y ++ +GV + + G ++ PI
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTIAAQTNLVDALQLREITREYEAVANGVMT-AGGLVDEPI 189
Query: 188 SRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R R +MA + G R + + Y+V+E + RLETGRTHQ
Sbjct: 190 GRHSTKRTQMAV----SYIG--RPSVTHYRVMEKYRL--HTRLRLRLETGRTHQ 235
>UNIPROTKB|P33643 [details] [associations]
symbol:rluD "23S rRNA pseudouridine synthase" species:83333
"Escherichia coli K-12" [GO:0000455 "enzyme-directed rRNA
pseudouridine synthesis" evidence=IMP] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0000027 GO:GO:0009982 SUPFAM:SSF55120
EMBL:X57620 EMBL:U50134 HOGENOM:HOG000275919 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 PIR:E65037
RefSeq:NP_417085.1 RefSeq:YP_490818.1 PDB:1PRZ PDB:1QYU PDB:1V9F
PDB:2IST PDBsum:1PRZ PDBsum:1QYU PDBsum:1V9F PDBsum:2IST
ProteinModelPortal:P33643 SMR:P33643 DIP:DIP-10721N IntAct:P33643
PRIDE:P33643 EnsemblBacteria:EBESCT00000000818
EnsemblBacteria:EBESCT00000015233 GeneID:12934203 GeneID:947087
KEGG:ecj:Y75_p2543 KEGG:eco:b2594 PATRIC:32120591 EchoBASE:EB2022
EcoGene:EG12098 KO:K06180 OMA:KTIPAQT ProtClustDB:PRK11180
BioCyc:EcoCyc:EG12098-MONOMER BioCyc:ECOL316407:JW2576-MONOMER
BioCyc:MetaCyc:EG12098-MONOMER EvolutionaryTrace:P33643
Genevestigator:P33643 Uniprot:P33643
Length = 326
Score = 171 (65.3 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V GG+ V + R E +DIPLDIVYED++++++NKP +VVHP GN GT++N
Sbjct: 59 VLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNA 118
Query: 89 ILHH 92
+LH+
Sbjct: 119 LLHY 122
Score = 168 (64.2 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 44/114 (38%), Positives = 60/114 (52%)
Query: 128 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 187
R GIVHRLDK T+GL+VVAK + L E + I R Y ++ G + + G ++ PI
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEPI 189
Query: 188 SRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
SR P R MA H + A + Y+++E + RLETGRTHQ
Sbjct: 190 SRHPTKRTHMAV------HPMGKPAVTHYRIMEHFRV--HTRLRLRLETGRTHQ 235
>UNIPROTKB|Q9KU20 [details] [associations]
symbol:rluD "Ribosomal large subunit pseudouridine synthase
D" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 161 (61.7 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 29 VKGGDMVNCTISELQP-LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GG+++ +EL+ R EA+D+PL+IVYEDD+++V+NKP VVHP G A T++N
Sbjct: 59 VMGGEVITVQ-AELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLN 117
Query: 88 GILHHCS 94
+L H S
Sbjct: 118 ALLFHYS 124
Score = 158 (60.7 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 42/114 (36%), Positives = 57/114 (50%)
Query: 128 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 187
R GIVHRLDK T+GL+VVAK + L + + R Y ++ G + + G I+ PI
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT-AGGMIDKPI 189
Query: 188 SRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R R M+ P +HA + Y+V E + RLETGRTHQ
Sbjct: 190 GRHSTKRTLMSVSP------MGKHAVTHYRVAEHFRE--HTRLRLRLETGRTHQ 235
>TIGR_CMR|VC_0709 [details] [associations]
symbol:VC_0709 "ribosomal large subunit pseudouridine
synthase D" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 ProtClustDB:PRK11180 PIR:G82289
RefSeq:NP_230358.1 ProteinModelPortal:Q9KU20 SMR:Q9KU20
DNASU:2615713 GeneID:2615713 KEGG:vch:VC0709 PATRIC:20080531
OMA:HEYVRER Uniprot:Q9KU20
Length = 324
Score = 161 (61.7 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 29 VKGGDMVNCTISELQP-LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GG+++ +EL+ R EA+D+PL+IVYEDD+++V+NKP VVHP G A T++N
Sbjct: 59 VMGGEVITVQ-AELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLN 117
Query: 88 GILHHCS 94
+L H S
Sbjct: 118 ALLFHYS 124
Score = 158 (60.7 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
Identities = 42/114 (36%), Positives = 57/114 (50%)
Query: 128 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 187
R GIVHRLDK T+GL+VVAK + L + + R Y ++ G + + G I+ PI
Sbjct: 131 RAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT-AGGMIDKPI 189
Query: 188 SRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R R M+ P +HA + Y+V E + RLETGRTHQ
Sbjct: 190 GRHSTKRTLMSVSP------MGKHAVTHYRVAEHFRE--HTRLRLRLETGRTHQ 235
>TIGR_CMR|NSE_0146 [details] [associations]
symbol:NSE_0146 "ribosomal large subunit pseudouridine
synthases, RluA family" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06180 RefSeq:YP_506045.1
ProteinModelPortal:Q2GEQ1 STRING:Q2GEQ1 GeneID:3931949
KEGG:nse:NSE_0146 PATRIC:22680393 OMA:GVIRREY
ProtClustDB:CLSK2527656 BioCyc:NSEN222891:GHFU-181-MONOMER
Uniprot:Q2GEQ1
Length = 330
Score = 183 (69.5 bits), Expect = 2.9e-25, Sum P(2) = 2.9e-25
Identities = 47/116 (40%), Positives = 62/116 (53%)
Query: 126 SIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEV 185
S RPGIVHRLDK T+G L+VAK +H LS+ K I R Y++L VP+ SG I+
Sbjct: 128 SSRPGIVHRLDKDTAGFLIVAKTNPAHLSLSQMIKEGVIRREYLALVHSVPASLSGEIKK 187
Query: 186 PISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
PI R ++ + G + A + Y VI +LV RL +GRTHQ
Sbjct: 188 PIKRG-QRKMMIGRCSG-------KPALTYYGVIARTVDRKCSLVHCRLGSGRTHQ 235
Score = 126 (49.4 bits), Expect = 2.9e-25, Sum P(2) = 2.9e-25
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 41 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 100
E +P A + PLD+ YEDD +LV+ KPA +VVHP GN TLVN + HH L+S
Sbjct: 68 ERKPRHAFVQ--PLDVRYEDDCLLVIYKPAGLVVHPGIGNREQTLVNILEHHYPTEKLSS 125
>TIGR_CMR|CBU_0757 [details] [associations]
symbol:CBU_0757 "ribosomal large subunit pseudouridine
synthase D" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HOGENOM:HOG000275919 Gene3D:3.10.290.10
TIGRFAMs:TIGR00005 KO:K06180 OMA:KTIPAQT RefSeq:YP_338280.2
GeneID:1208648 KEGG:cbu:CBU_0757 PATRIC:17930207
ProtClustDB:CLSK940427 BioCyc:CBUR227377:GJ7S-755-MONOMER
Uniprot:Q4AAY0
Length = 327
Score = 171 (65.3 bits), Expect = 8.2e-25, Sum P(2) = 8.2e-25
Identities = 48/115 (41%), Positives = 65/115 (56%)
Query: 128 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGR-IEVP 186
R GI+HRLDK TSGLL++A+ SH L + K I R Y ++ GV SGR IE P
Sbjct: 136 RAGIIHRLDKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGV--LISGRTIEAP 193
Query: 187 ISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R P +R RMA + + G R A + +++I+ V+ LETGRTHQ
Sbjct: 194 VGRHPIHRTRMAVV----EFG--RPAITHFRIIKRYRAHTHIRVQ--LETGRTHQ 240
Score = 135 (52.6 bits), Expect = 8.2e-25, Sum P(2) = 8.2e-25
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 40 SELQPL-RAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 92
++L+P R + IPLD++YED+ +LV+NKP ++VHP G TL+N +LH+
Sbjct: 74 AQLEPNERWVPQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLHY 127
>TIGR_CMR|APH_0362 [details] [associations]
symbol:APH_0362 "ribosomal large subunit pseudouridine
synthase, RluA family" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:GVIRREY RefSeq:YP_504969.1 ProteinModelPortal:Q2GKY2
STRING:Q2GKY2 GeneID:3930557 KEGG:aph:APH_0362 PATRIC:20949328
ProtClustDB:CLSK2463740 BioCyc:APHA212042:GHPM-391-MONOMER
Uniprot:Q2GKY2
Length = 324
Score = 167 (63.8 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 43/118 (36%), Positives = 63/118 (53%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
G S RPGI+HRLDK TSGL+V+AK E ++ LS+ + + Y++L GVP+ I
Sbjct: 130 GNSHRPGIIHRLDKDTSGLMVIAKTEKAYLVLSQALEEKKFRKEYLALIWGVPTTKHCFI 189
Query: 184 EVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + +++ M KH A + Y +IE G ++L L TGRTHQ
Sbjct: 190 QTNLDVKRSDKTMMEVTLSRGKH-----ANTEY-IIEKTFGNVASLARCILHTGRTHQ 241
Score = 132 (51.5 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 23 LSVSHNVKGGDMVNCTISEL-QPLRAEAE-DIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
L+ SH GD+ T+ + Q + DIPL I+YED++++V++K ++ VHP G
Sbjct: 50 LNNSHLTNTGDVYTVTVPDTPQSTSIDPNHDIPLHIIYEDEHIIVIDKAPNIAVHPGHGT 109
Query: 81 ATGTLVNGILHHCSLPTLASSN 102
TL + +L HC A N
Sbjct: 110 KNDTLAHALLAHCGNALCAVGN 131
>TIGR_CMR|ECH_0486 [details] [associations]
symbol:ECH_0486 "ribosomal large subunit pseudouridine
synthase, RluA family" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:HEYVRER RefSeq:YP_507302.1 ProteinModelPortal:Q2GGY1
STRING:Q2GGY1 GeneID:3927534 KEGG:ech:ECH_0486 PATRIC:20576444
ProtClustDB:CLSK749443 BioCyc:ECHA205920:GJNR-488-MONOMER
Uniprot:Q2GGY1
Length = 337
Score = 185 (70.2 bits), Expect = 9.5e-24, Sum P(2) = 9.5e-24
Identities = 45/118 (38%), Positives = 70/118 (59%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
G + RPGI+HRLDK TSGL+V+AK+E S+ LS+ I++ Y+++ G+P+ S I
Sbjct: 143 GKATRPGIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAVVWGLPNPKSNTI 202
Query: 184 EVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ I PNN+ M +K G+ A + Y+ + + S L++ R+ TGRTHQ
Sbjct: 203 KNYICVKPNNKQMMTVTHLPHK-GKL--AITEYQTQKSFSNIAS-LIKCRIHTGRTHQ 256
Score = 110 (43.8 bits), Expect = 9.5e-24, Sum P(2) = 9.5e-24
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 26 SHNVKGGDMVNCTI--SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
+H K D+ N +I + IP+ +VYED +++++NK + VHP G
Sbjct: 66 NHITKVNDIYNISIPIKTISDTITPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNNN 125
Query: 84 TLVNGILHH 92
TLVN ++ H
Sbjct: 126 TLVNALVAH 134
>TIGR_CMR|CJE_1416 [details] [associations]
symbol:CJE_1416 "ribosomal large subunit pseudouridine
synthases, RluA family" species:195099 "Campylobacter jejuni
RM1221" [GO:0009451 "RNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0004730 HOGENOM:HOG000275919
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005 KO:K06180
OMA:VSGREDR RefSeq:YP_179402.1 ProteinModelPortal:Q5HTI3
STRING:Q5HTI3 GeneID:3231922 KEGG:cjr:CJE1416 PATRIC:20044634
ProtClustDB:CLSK872435 BioCyc:CJEJ195099:GJC0-1443-MONOMER
Uniprot:Q5HTI3
Length = 322
Score = 177 (67.4 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 43/118 (36%), Positives = 67/118 (56%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
G IR G+VHRLDK TSG +++AK+ +H LSEQ ++ R+Y++L + +
Sbjct: 123 GGEIRAGLVHRLDKDTSGSILIAKNNFTHQKLSEQLADKSMGRIYLALIDLPLKEDKIIV 182
Query: 184 EVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
E + R P+N I+ AI NK +++A S + I ++ L+ +L TGRTHQ
Sbjct: 183 EKFLMRSPSNAIKKIAIDKENKF--SKNAKSAF--INVVKTENLTLMAAKLFTGRTHQ 236
Score = 114 (45.2 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 23/67 (34%), Positives = 44/67 (65%)
Query: 26 SHNVKGGDMVNCTISEL-QPLRAEAE-DIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S +K GD+++ +L ++ + E D +D++YED+++LV+NKP+++VVH A
Sbjct: 47 SFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASSVKNA 106
Query: 84 TLVNGIL 90
TLV+ ++
Sbjct: 107 TLVDWLI 113
>TIGR_CMR|GSU_3353 [details] [associations]
symbol:GSU_3353 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275914
RefSeq:NP_954393.1 ProteinModelPortal:Q747B4 GeneID:2686435
KEGG:gsu:GSU3353 PATRIC:22029561 OMA:WALLHRL ProtClustDB:CLSK829240
BioCyc:GSUL243231:GH27-3287-MONOMER Uniprot:Q747B4
Length = 296
Score = 178 (67.7 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 40/117 (34%), Positives = 69/117 (58%)
Query: 126 SIRPG-IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE 184
S P ++HRLD+GTSG+++ + AH+S + K +E+VY +L +G+P S +++
Sbjct: 123 SAEPARVIHRLDRGTSGVMIFPASRRAAAHISRELKEGRVEKVYWALVAGMPLADSWQVD 182
Query: 185 VPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
P+++ +R +A + G+A A + ++V+ G G+ LVE R TGRTHQ
Sbjct: 183 APVAKVGTSRYGVAPV------GKA--ALTEFRVVA--RGNGATLVEARPRTGRTHQ 229
Score = 67 (28.6 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S ++ GD + + E + R E P DI++ED L VNK + + P GT+
Sbjct: 52 SRRLQAGDEIVLGVMEPERYR-EITLAPEDILFEDGGYLAVNKASGLNCQRTPYQLKGTV 110
Query: 86 VNGILHH 92
+ H
Sbjct: 111 EYAVTLH 117
>TIGR_CMR|CPS_0536 [details] [associations]
symbol:CPS_0536 "RNA pseudouridine synthase family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06177
RefSeq:YP_267294.1 ProteinModelPortal:Q489H0 STRING:Q489H0
GeneID:3520534 KEGG:cps:CPS_0536 PATRIC:21464415
HOGENOM:HOG000222064 OMA:MAEFWWG ProtClustDB:CLSK896118
BioCyc:CPSY167879:GI48-631-MONOMER Uniprot:Q489H0
Length = 567
Score = 157 (60.3 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 40/111 (36%), Positives = 66/111 (59%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
IVHRLD TSGLL++A +E +H HL +QF I + Y++ G ++SG I +P+ D
Sbjct: 410 IVHRLDMATSGLLMLALNERAHKHLQQQFMNKEINKRYVATIEGKLEKTSGEICLPLRGD 469
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++R + ++HG ++A + +++IE + S L + + TGRTHQ
Sbjct: 470 FDDRPKQMVC---HEHG--KYAETHWQLIEEV-DNTSKLFLYPI-TGRTHQ 513
Score = 78 (32.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 32 GDMVNCTISELQPLRAE-AEDIPLDIVYEDDNVLVVNKPAHMVVHP 76
G M+ + PL AE I L+IV++D++V+VVNKPA ++ P
Sbjct: 341 GHMLEGMEVDKNPLLINPAEGIDLEIVFQDEHVVVVNKPAGLLSVP 386
>DICTYBASE|DDB_G0280463 [details] [associations]
symbol:DDB_G0280463 "Ribosomal large subunit
pseudouridine synthase D" species:44689 "Dictyostelium discoideum"
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 SMART:SM00363
dictyBase:DDB_G0280463 GO:GO:0003723 EMBL:AAFI02000036
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 RefSeq:XP_641190.1 ProteinModelPortal:Q54VB9
EnsemblProtists:DDB0205216 GeneID:8622571 KEGG:ddi:DDB_G0280463
InParanoid:Q54VB9 OMA:VHMASEN Uniprot:Q54VB9
Length = 746
Score = 163 (62.4 bits), Expect = 9.9e-13, Sum P(2) = 9.9e-13
Identities = 58/199 (29%), Positives = 88/199 (44%)
Query: 51 DIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQXXXXXXX 110
DI LDIVYED ++ ++NKPA M+VHP G+ I TL ++
Sbjct: 190 DIKLDIVYEDKDLAIINKPAGMLVHPT-ALTLGSNALVINKEDQTHTLVNA--------L 240
Query: 111 XXXXXXXXXXXXXGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHT---IERV 167
G RPGIVHRLDK T+G++++A++ H L F+ HT I
Sbjct: 241 IHRYGGVENLSSVGGVERPGIVHRLDKDTAGMIIIARNNDVHQKLQTLFEKHTSTMITHT 300
Query: 168 YISLTSGVPSQSSGRIE-------VPISRDPNNRIRMAAIPGSNKHGQ-----ARHAASR 215
I S S+ +IE +P++ + P +HG +RH A +
Sbjct: 301 TIDQYEDNGSISNNQIERMLQGKKIPLTISKKYHCIVLGKP-KEQHGFINKKISRHPADK 359
Query: 216 YKVIEILAGGGSALVEWRL 234
K++ G AL E+++
Sbjct: 360 NKMVIDQDNGKEALTEFKV 378
Score = 41 (19.5 bits), Expect = 9.9e-13, Sum P(2) = 9.9e-13
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 228 ALVEWRLETGRTHQ 241
+L+E L TGR+HQ
Sbjct: 548 SLLEVTLHTGRSHQ 561
>ZFIN|ZDB-GENE-040801-238 [details] [associations]
symbol:zgc:92006 "zgc:92006" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
ZFIN:ZDB-GENE-040801-238 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 HOVERGEN:HBG054698 EMBL:BC078405
IPI:IPI00495929 RefSeq:NP_001003495.1 UniGene:Dr.79840
ProteinModelPortal:Q6DBR0 STRING:Q6DBR0 Ensembl:ENSDART00000020283
GeneID:445101 KEGG:dre:445101 HOGENOM:HOG000136349
InParanoid:Q6DBR0 OMA:SKARYIP OrthoDB:EOG4FFD2H NextBio:20831865
ArrayExpress:Q6DBR0 Bgee:Q6DBR0 Uniprot:Q6DBR0
Length = 358
Score = 150 (57.9 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 45/136 (33%), Positives = 73/136 (53%)
Query: 126 SIRPG----IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSG 181
++RPG + H+L+K T+G+L++AK E + H+ + H +E Y+++T GVP S G
Sbjct: 132 NMRPGSQLHLCHKLEKETTGVLILAKTEEAAEHVQTLIQSHKVEMKYLAITVGVPVPSEG 191
Query: 182 RIEVP-ISR---DPNNRIRMAAIP---------GSNK---HGQARHAASRYKVIEILAGG 225
I++P I R P +MA P G + H QA A +RY+V++ +G
Sbjct: 192 VIDIPVIERAVVGPQPHFKMALSPLFKVNEDGDGVTRVRAHRQAHAAVTRYQVLDNTSG- 250
Query: 226 GSALVEWRLETGRTHQ 241
+LVE + TG +Q
Sbjct: 251 -CSLVELQPLTGVKNQ 265
Score = 60 (26.2 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 57 VYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 99
+YED N++ +NKP + +H N G + + C LP LA
Sbjct: 92 LYEDQNIIAINKPYDVPLH----NING--IRNSIAEC-LPLLA 127
>TIGR_CMR|CHY_1119 [details] [associations]
symbol:CHY_1119 "ribosomal large subunit pseudouridine
synthase, RluA family" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0001522 "pseudouridine synthesis"
evidence=ISS] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009982 "pseudouridine synthase activity" evidence=ISS]
InterPro:IPR006145 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
eggNOG:COG0564 TIGRFAMs:TIGR00005 RefSeq:YP_359965.1
ProteinModelPortal:Q3AD19 STRING:Q3AD19 GeneID:3727661
KEGG:chy:CHY_1119 PATRIC:21275376 OMA:ITHILAC
BioCyc:CHYD246194:GJCN-1118-MONOMER Uniprot:Q3AD19
Length = 301
Score = 127 (49.8 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 34/110 (30%), Positives = 59/110 (53%)
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
++RLD+ TSG +++AK L+ + I ++Y++L G + SG I +P+
Sbjct: 129 IYRLDRNTSGPMLIAKFSLIAEMLNNSLRKRQINKIYLALIEGPLADKSGIINLPLGLLE 188
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ I+ A +PG GQ A ++Y+ ++ A L++ L TGRTHQ
Sbjct: 189 GSIIKRAVVPG----GQP--ACTKYQTVK--AFPTHTLLKVELLTGRTHQ 230
Score = 89 (36.4 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 76
SH G++V + P ++++ P+ ++YEDD ++V++KPA ++ HP
Sbjct: 50 SHLTTPGEVV-IKLPHTLPPAVQSQNAPVKVLYEDDYLIVIDKPAGVLAHP 99
>TIGR_CMR|ECH_0774 [details] [associations]
symbol:ECH_0774 "ribosomal large subunit pseudouridine
synthase C" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_507572.1
ProteinModelPortal:Q2GG61 STRING:Q2GG61 GeneID:3927994
KEGG:ech:ECH_0774 PATRIC:20576978 OMA:HAYFLSI
ProtClustDB:CLSK749111 BioCyc:ECHA205920:GJNR-777-MONOMER
Uniprot:Q2GG61
Length = 307
Score = 140 (54.3 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 39/118 (33%), Positives = 65/118 (55%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
G S++ IVHRLDK TSG+L++A++ + +FK +E+ Y++LT G+P G+I
Sbjct: 131 GESMK--IVHRLDKDTSGILMLARNARISRLIMHEFKNRRVEKKYLALTQGIPKNDIGQI 188
Query: 184 EVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
I + N+ R ++ N + A + + V++ L G L+E + TGR HQ
Sbjct: 189 NHSIIK---NK-RSLSLDKVND-SYLQEAVTSFSVLKKLPYG-IGLLELKPITGRKHQ 240
Score = 69 (29.3 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 56 IVYEDDNVLVVNKPAHMVV 74
+VYEDD+VL++NKPA + V
Sbjct: 93 VVYEDDDVLIINKPAGISV 111
>UNIPROTKB|P0AA37 [details] [associations]
symbol:rluA species:83333 "Escherichia coli K-12"
[GO:0031118 "rRNA pseudouridine synthesis" evidence=IMP]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IMP]
[GO:0009451 "RNA modification" evidence=IMP] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IDA;IMP] [GO:0001522
"pseudouridine synthesis" evidence=IMP] [GO:0008033 "tRNA
processing" evidence=IMP] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000455
"enzyme-directed rRNA pseudouridine synthesis" evidence=IMP]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 HOGENOM:HOG000275919
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455
PIR:B64727 RefSeq:NP_414600.1 RefSeq:YP_488364.1 PDB:2I82
PDBsum:2I82 ProteinModelPortal:P0AA37 SMR:P0AA37 DIP:DIP-47988N
PRIDE:P0AA37 EnsemblBacteria:EBESCT00000004777
EnsemblBacteria:EBESCT00000017147 GeneID:12933046 GeneID:946262
KEGG:ecj:Y75_p0058 KEGG:eco:b0058 PATRIC:32115215 EchoBASE:EB2493
EcoGene:EG12609 KO:K06177 OMA:CQIVHRL ProtClustDB:PRK10158
BioCyc:EcoCyc:EG12609-MONOMER BioCyc:ECOL316407:JW0057-MONOMER
BioCyc:MetaCyc:EG12609-MONOMER EvolutionaryTrace:P0AA37
Genevestigator:P0AA37 Uniprot:P0AA37
Length = 219
Score = 135 (52.6 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 36/110 (32%), Positives = 58/110 (52%)
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
VHRLD TSG++VVA + + L QF+ ++ Y++ G PS + G +++P+ D
Sbjct: 60 VHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDW 119
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NR + + K Q + Y+V+E A +A V + TGR+HQ
Sbjct: 120 PNRPKQKVCYETGKPAQ-----TEYEVVEY-AADNTARVVLKPITGRSHQ 163
Score = 63 (27.2 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVHP 76
L I+Y+DD+++VVNKP+ ++ P
Sbjct: 14 LVILYQDDHIMVVNKPSGLLSVP 36
>UNIPROTKB|Q9KP71 [details] [associations]
symbol:rluA "Ribosomal large subunit pseudouridine synthase
A" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 138 (53.6 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+VHRLD TSGL++ AK +H + L +QF+ ++Y + GV Q+ G + +P+ D
Sbjct: 59 VVHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCD 118
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NR + + R + +RY+V++ + +V TGR+HQ
Sbjct: 119 WPNRPKQKVC-----FEEGRDSLTRYQVVK--REEKTTVVRLIPITGRSHQ 162
Score = 62 (26.9 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVHP 76
+D++YED++++ NKP+ ++ P
Sbjct: 14 IDVIYEDEHIIAANKPSGLLSVP 36
>TIGR_CMR|VC_2505 [details] [associations]
symbol:VC_2505 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154
eggNOG:COG0564 KO:K06177 OMA:CQIVHRL PIR:G82068 RefSeq:NP_232134.1
ProteinModelPortal:Q9KP71 SMR:Q9KP71 DNASU:2615169 GeneID:2615169
KEGG:vch:VC2505 PATRIC:20084039 ProtClustDB:CLSK874821
Uniprot:Q9KP71
Length = 245
Score = 138 (53.6 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 34/111 (30%), Positives = 58/111 (52%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+VHRLD TSGL++ AK +H + L +QF+ ++Y + GV Q+ G + +P+ D
Sbjct: 59 VVHRLDMSTSGLILFAKGKHMESALKKQFQYRLTHKIYYARVWGVMEQNEGEVNLPLCCD 118
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NR + + R + +RY+V++ + +V TGR+HQ
Sbjct: 119 WPNRPKQKVC-----FEEGRDSLTRYQVVK--REEKTTVVRLIPITGRSHQ 162
Score = 62 (26.9 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVHP 76
+D++YED++++ NKP+ ++ P
Sbjct: 14 IDVIYEDEHIIAANKPSGLLSVP 36
>UNIPROTKB|Q9KQH0 [details] [associations]
symbol:rluC "Ribosomal large subunit pseudouridine synthase
C" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 134 (52.2 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 35/111 (31%), Positives = 60/111 (54%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+VHR+D+ TSG+L+VAK + HL QF+ T+++ Y +L G + P+ ++
Sbjct: 141 LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKN 200
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N I N +G+ + +R++++E A + LV+ TGRTHQ
Sbjct: 201 EVNSIVRV-----NPNGKP--SETRFRILEKFAE--ATLVQASPVTGRTHQ 242
Score = 74 (31.1 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 56 IVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
IVYEDD++L++NKP+ VH G G +
Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGSGLHFGAI 126
>TIGR_CMR|VC_2028 [details] [associations]
symbol:VC_2028 "ribosomal large subunit pseudouridine
synthase C" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 KO:K06179 OMA:HAANIKF PIR:G82126
RefSeq:NP_231662.1 ProteinModelPortal:Q9KQH0 SMR:Q9KQH0
DNASU:2613407 GeneID:2613407 KEGG:vch:VC2028 PATRIC:20083088
ProtClustDB:CLSK874642 Uniprot:Q9KQH0
Length = 315
Score = 134 (52.2 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 35/111 (31%), Positives = 60/111 (54%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+VHR+D+ TSG+L+VAK + HL QF+ T+++ Y +L G + P+ ++
Sbjct: 141 LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKN 200
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N I N +G+ + +R++++E A + LV+ TGRTHQ
Sbjct: 201 EVNSIVRV-----NPNGKP--SETRFRILEKFAE--ATLVQASPVTGRTHQ 242
Score = 74 (31.1 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 56 IVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
IVYEDD++L++NKP+ VH G G +
Sbjct: 97 IVYEDDHLLILNKPSGTAVHGGSGLHFGAI 126
>TIGR_CMR|SPO_3392 [details] [associations]
symbol:SPO_3392 "ribosomal large subunit pseudouridine
synthase A" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919
TIGRFAMs:TIGR00005 KO:K06177 OMA:CQIVHRL RefSeq:YP_168588.1
ProteinModelPortal:Q5LN20 SMR:Q5LN20 GeneID:3194821
KEGG:sil:SPO3392 PATRIC:23380239 ProtClustDB:CLSK934145
Uniprot:Q5LN20
Length = 215
Score = 127 (49.8 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 34/115 (29%), Positives = 57/115 (49%)
Query: 129 PG--IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVP 186
PG +VHRLD+ TSG++V A+ H+ +L QF+ + Y++ G +G +++P
Sbjct: 53 PGALLVHRLDRDTSGVMVFAQTPHAQRNLGRQFEERKTRKTYVARLWGRLEPKTGTVDLP 112
Query: 187 ISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ D NR R H + A + ++V+ G + V TGR+HQ
Sbjct: 113 LIVDWPNRPRQMVC-----HETGKPAVTDWRVLRY--EGDTTRVRLLPRTGRSHQ 160
Score = 69 (29.3 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 53 PLDIVYEDDNVLVVNKPAHMVVHPAPG 79
PLD+++ED ++V+NKPA ++ P G
Sbjct: 11 PLDVLHEDAELIVLNKPAGLLSVPGRG 37
>UNIPROTKB|Q9KN61 [details] [associations]
symbol:VC_A0104 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 127 (49.8 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
+HRLD TSGLLV A ++ L +QF +++ Y++L G S++ G I++P+ D
Sbjct: 65 LHRLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDL 124
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++R R Q + A + ++ +++ V TGRTHQ
Sbjct: 125 DDRPRQKVC-----WQQGKPALTHWETVQVEQN--RTRVYLYPHTGRTHQ 167
Score = 70 (29.7 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 47 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 76
A+ +DI IVY+DD ++VVNKPA + P
Sbjct: 13 AQGQDIT--IVYQDDAIVVVNKPAEFLSVP 40
>TIGR_CMR|VC_A0104 [details] [associations]
symbol:VC_A0104 "ribosomal large subunit pseudouridine
synthase A" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0000154 KO:K06177 PIR:C82498
RefSeq:NP_232505.1 HSSP:Q8X9F0 ProteinModelPortal:Q9KN61
DNASU:2612237 GeneID:2612237 KEGG:vch:VCA0104 PATRIC:20084787
OMA:FENNITQ ProtClustDB:CLSK788635 Uniprot:Q9KN61
Length = 221
Score = 127 (49.8 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
+HRLD TSGLLV A ++ L +QF +++ Y++L G S++ G I++P+ D
Sbjct: 65 LHRLDMSTSGLLVFALTRRANKQLQKQFISRAVQKRYVALIEGKLSETQGEIQLPLCGDL 124
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++R R Q + A + ++ +++ V TGRTHQ
Sbjct: 125 DDRPRQKVC-----WQQGKPALTHWETVQVEQN--RTRVYLYPHTGRTHQ 167
Score = 70 (29.7 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 47 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 76
A+ +DI IVY+DD ++VVNKPA + P
Sbjct: 13 AQGQDIT--IVYQDDAIVVVNKPAEFLSVP 40
>TIGR_CMR|APH_0549 [details] [associations]
symbol:APH_0549 "ribosomal large subunit pseudouridine
synthase C" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_505141.1
ProteinModelPortal:Q2GKG0 STRING:Q2GKG0 GeneID:3930562
KEGG:aph:APH_0549 PATRIC:20949758 OMA:YMIATIN
ProtClustDB:CLSK747316 BioCyc:APHA212042:GHPM-573-MONOMER
Uniprot:Q2GKG0
Length = 297
Score = 135 (52.6 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
IVHRLD+ TSG+L++A+ + LSE+ + + + YI++T GVP+ S G I +PI
Sbjct: 121 IVHRLDRDTSGVLIIARGQSIARILSEELRFRRVRKEYIAVTKGVPAFSKGEITMPIYCK 180
Query: 191 PNNRIRMAAIPGSNK 205
+ + IP K
Sbjct: 181 KQSGVGETLIPKEAK 195
Score = 67 (28.6 bits), Expect = 9.9e-11, Sum P(2) = 9.9e-11
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 18 LSMDKLSVSHNVKGGDMVNC-TISELQPLRAEAEDIPLD---------IVYEDDNVLVVN 67
L+ K S V+ GD V+ + ++ EA+++ D I+Y+D+N++ +N
Sbjct: 30 LNSSKALASSRVQRGDTVSIRNVDKIASRSKEAKEVHDDALLRLVSDNIIYKDENIIAIN 89
Query: 68 KPA 70
KPA
Sbjct: 90 KPA 92
Score = 38 (18.4 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 28 NVKGGDMVNCTISEL 42
NV+GG V+ ++S+L
Sbjct: 95 NVQGGTKVSISLSDL 109
>TIGR_CMR|CPS_4520 [details] [associations]
symbol:CPS_4520 "ribosomal large subunit pseudouridine
synthase A" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 eggNOG:COG0564
KO:K06177 RefSeq:YP_271168.1 ProteinModelPortal:Q47VK4 SMR:Q47VK4
STRING:Q47VK4 GeneID:3518755 KEGG:cps:CPS_4520 PATRIC:21471863
OMA:FYATEEA ProtClustDB:CLSK757241
BioCyc:CPSY167879:GI48-4529-MONOMER Uniprot:Q47VK4
Length = 227
Score = 133 (51.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 31/114 (27%), Positives = 61/114 (53%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
IVHRLD TSG++++A ++ +H +S QF+ ++ Y++ G+ + G +++P+ D
Sbjct: 62 IVHRLDMATSGIMIMALNKPAHVAISRQFEQRKTQKSYLARVWGLVELNEGSVDLPLISD 121
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVI---EILAGGGSALVEWRLETGRTHQ 241
NR + H + + + Y+V+ + + + L+E TGR+HQ
Sbjct: 122 WPNRPKQKV-----DHENGKKSLTHYRVLSHNDSIDEQANTLLELTPITGRSHQ 170
Score = 61 (26.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVHP 76
LDI+Y+DD+++V+NK + ++ P
Sbjct: 17 LDIIYQDDDIVVLNKASGILSVP 39
>TIGR_CMR|CPS_2290 [details] [associations]
symbol:CPS_2290 "ribosomal large subunit pseudouridine
synthase C" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF
RefSeq:YP_269010.1 ProteinModelPortal:Q482K7 SMR:Q482K7
STRING:Q482K7 GeneID:3520678 KEGG:cps:CPS_2290 PATRIC:21467679
BioCyc:CPSY167879:GI48-2355-MONOMER Uniprot:Q482K7
Length = 360
Score = 130 (50.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 37/112 (33%), Positives = 61/112 (54%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGV-PSQSSGRIEVPISR 189
+VHRLD+ TSG L+VAK + HL EQF+ +++ Y +L G P++ + +
Sbjct: 182 LVHRLDRDTSGCLMVAKKRSTLRHLHEQFRDKNVQKFYHALVKGHWPTKLTRVTDALKKN 241
Query: 190 DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
D + R+ + N+ G + + +R++V+E G + LV TGRTHQ
Sbjct: 242 DLKSGERVVVV--DNQLG--KESETRFRVLERYRG--ATLVRAFPVTGRTHQ 287
Score = 75 (31.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 56 IVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
I++EDD ++V+NKP+ M VH G + G +
Sbjct: 138 ILFEDDRLIVINKPSGMAVHGGSGLSFGLI 167
>TIGR_CMR|SPO_0516 [details] [associations]
symbol:SPO_0516 "ribosomal large subunit pseudouridine
synthase C" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003723
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 TIGRFAMs:TIGR00005 OMA:GEKMLCI
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_165778.1
ProteinModelPortal:Q5LW27 GeneID:3196070 KEGG:sil:SPO0516
PATRIC:23374295 ProtClustDB:CLSK933288 Uniprot:Q5LW27
Length = 347
Score = 137 (53.3 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 38/125 (30%), Positives = 62/125 (49%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
G P +VHRLDK TSG+LV+A+ + A L+ F+ ++Y +L +GVP+ G I
Sbjct: 131 GNDENPRLVHRLDKDTSGVLVLARTREAAARLTAAFRHRNTRKIYWALVAGVPTPYLGEI 190
Query: 184 EVPI-------SRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLET 236
+ + +R ++ + + + A+ A + Y + +AG S V T
Sbjct: 191 KTGLVKAGGHGARGEGEKMNVVHLSELDATPGAKRAHTYYATLYRVAGRAS-WVAMEPVT 249
Query: 237 GRTHQ 241
GRTHQ
Sbjct: 250 GRTHQ 254
Score = 60 (26.2 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 47 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
++A+ I +++ DD+++V+NKPA + V G
Sbjct: 84 SDAKLIRACVLHRDDDIIVLNKPAGLAVQGGSG 116
>SGD|S000005427 [details] [associations]
symbol:RIB2 "Bifunctional DRAP deaminase and
tRNA:pseudouridine synthase" species:4932 "Saccharomyces
cerevisiae" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA;ISS;IMP;IDA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA;IMP] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009231 "riboflavin biosynthetic process"
evidence=IEA;IMP] [GO:0008835
"diaminohydroxyphosphoribosylaminopyrimidine deaminase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISM;IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR002125 InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR016193
InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 UniPathway:UPA00275 SGD:S000005427
GO:GO:0005737 EMBL:BK006948 GO:GO:0046872 GO:GO:0008270
SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0009231 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 GeneTree:ENSGT00420000029802 OrthoDB:EOG4BK8C8
eggNOG:COG0117 KO:K14655 GO:GO:0008835 EMBL:Z21618 EMBL:Z74808
PIR:S50972 RefSeq:NP_014575.1 ProteinModelPortal:Q12362 SMR:Q12362
DIP:DIP-3840N MINT:MINT-495231 STRING:Q12362 PaxDb:Q12362
PeptideAtlas:Q12362 PRIDE:Q12362 EnsemblFungi:YOL066C GeneID:854088
KEGG:sce:YOL066C CYGD:YOL066c OMA:EQCALEK
BioCyc:MetaCyc:YOL066C-MONOMER NextBio:975737 Genevestigator:Q12362
GermOnline:YOL066C GO:GO:0043723 Uniprot:Q12362
Length = 591
Score = 114 (45.2 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 32/118 (27%), Positives = 60/118 (50%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
G S+ P +RLDK TSGL+ +AK + +Q K + + Y++ G +
Sbjct: 201 GYSVHP--CNRLDKPTSGLMFLAKTPLGADRMGDQMKAREVTKEYVARVKGEFPIGIVEV 258
Query: 184 EVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ P+ R N ++ + A+ + A+HA + ++ + G +++V+ + TGRTHQ
Sbjct: 259 DKPV-RSVNPKVALNAVCEMSDEN-AKHAKTVFQRVSY--DGQTSIVKCKPLTGRTHQ 312
Score = 95 (38.5 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 17/61 (27%), Positives = 38/61 (62%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
++L+ + ++ ++ GD++ + +P P+DIV+ED+++LV++KP+ + VH
Sbjct: 126 VYLNDEPANLDTIIRDGDLITHKVHRHEP---PVTSKPIDIVFEDEDILVIDKPSSIPVH 182
Query: 76 P 76
P
Sbjct: 183 P 183
>MGI|MGI:1919239 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain
containing 4" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
MGI:MGI:1919239 GO:GO:0005739 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
GeneTree:ENSGT00530000063800 CTD:84881 HOVERGEN:HBG054698
HOGENOM:HOG000136349 OMA:SKARYIP OrthoDB:EOG4FFD2H EMBL:AK010322
EMBL:AK156574 EMBL:BC061256 IPI:IPI00109744 RefSeq:NP_082316.1
UniGene:Mm.273515 UniGene:Mm.474966 ProteinModelPortal:Q9CWX4
SMR:Q9CWX4 STRING:Q9CWX4 PhosphoSite:Q9CWX4 PRIDE:Q9CWX4
Ensembl:ENSMUST00000034543 GeneID:71989 KEGG:mmu:71989
UCSC:uc009otc.1 InParanoid:Q9CWX4 NextBio:335146 Bgee:Q9CWX4
CleanEx:MM_RPUSD4 Genevestigator:Q9CWX4 Uniprot:Q9CWX4
Length = 377
Score = 125 (49.1 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 38/125 (30%), Positives = 65/125 (52%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS-- 188
+ HRLDK T+G++V+A ++ + E F+ +E+ Y ++T VP S+G +++PI
Sbjct: 148 LCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQVEKKYWAITVRVPLPSAGVVDIPIKEK 207
Query: 189 --RDPNNRIRMAAIPG----SNKHGQAR-----HAA-SRYKVIEILAGGGSALVEWRLET 236
+ P +M P + K + R H A ++Y+V+ + SALVE + T
Sbjct: 208 EVQGPQQHHKMTLSPSYRLDNGKMVKVRASRDAHVAVTQYQVLS--SASSSALVELQPVT 265
Query: 237 GRTHQ 241
G HQ
Sbjct: 266 GIKHQ 270
Score = 67 (28.6 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
A+++ I+++D++++V+NKP + VH PG
Sbjct: 92 AKELSRRILHQDNDLVVINKPYGLPVHGGPG 122
>UNIPROTKB|Q4KFS5 [details] [associations]
symbol:rluC "Pseudouridine synthase" species:220664
"Pseudomonas protegens Pf-5" [GO:0006364 "rRNA processing"
evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129 PROSITE:PS50889
SMART:SM00363 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
GO:GO:0006364 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.10.290.10 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF RefSeq:YP_258908.1
ProteinModelPortal:Q4KFS5 SMR:Q4KFS5 STRING:Q4KFS5 GeneID:3477558
KEGG:pfl:PFL_1788 PATRIC:19872807 ProtClustDB:CLSK867667
BioCyc:PFLU220664:GIX8-1796-MONOMER Uniprot:Q4KFS5
Length = 318
Score = 122 (48.0 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 36/113 (31%), Positives = 61/113 (53%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+VHRLD+ TSGLL++AK HL + +++ Y++L G + + ++ P+ +
Sbjct: 141 LVHRLDRDTSGLLMIAKKRSMLRHLHAALRGDGVDKRYMALVRGHWATAVKQVRAPLLKS 200
Query: 191 PNNRI--RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N R RM + N+ G + A + +KV+ G + +VE + TGRTHQ
Sbjct: 201 -NLRSGERMVEV---NEEG--KEALTVFKVLRRF-GDFATMVEAKPVTGRTHQ 246
Score = 66 (28.3 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 56 IVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
IV+ED ++V+NKPA + VH G G +
Sbjct: 97 IVFEDKALIVINKPAGIAVHGGSGLNFGVI 126
>SGD|S000002194 [details] [associations]
symbol:PUS9 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;ISM;IMP] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IMP;IDA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
SGD:S000002194 GO:GO:0005739 GO:GO:0005634 EMBL:BK006938
GO:GO:0003723 EMBL:Z71781 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 eggNOG:COG0564 TIGRFAMs:TIGR00005
HOGENOM:HOG000167783 EMBL:Z74084 EMBL:AY692682 PIR:S67569
RefSeq:NP_010248.1 ProteinModelPortal:Q12069 SMR:Q12069
DIP:DIP-5399N MINT:MINT-553402 STRING:Q12069 PaxDb:Q12069
EnsemblFungi:YDL036C GeneID:851525 KEGG:sce:YDL036C CYGD:YDL036c
GeneTree:ENSGT00420000029802 KO:K15454 OMA:GHPISND
OrthoDB:EOG4BK8C8 NextBio:968911 Genevestigator:Q12069
GermOnline:YDL036C Uniprot:Q12069
Length = 462
Score = 105 (42.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 30/110 (27%), Positives = 60/110 (54%)
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISR-DP 191
+RLD+ TSGL+ +AK ++ +Q K + + Y++ G ++ +E P+ +P
Sbjct: 235 NRLDRLTSGLMFLAKTPKGADNIGDQLKAREVTKEYVAKVVGEFPETEVIVEKPLKLIEP 294
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+ + A+ ++ G A+HA + + I G +++V+ + TGR+HQ
Sbjct: 295 --RLALNAVCQMDEKG-AKHAKTVFNRISY--DGKTSIVKCKPLTGRSHQ 339
Score = 90 (36.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 76
++ GD++ + +P P+ +++EDDN++V++KP+ + VHP
Sbjct: 166 IRNGDLITHQVHRHEP---PVTSRPIKVIFEDDNIMVIDKPSGIPVHP 210
>UNIPROTKB|E1BYI6 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 CTD:84881 OMA:SKARYIP
EMBL:AADN02042045 EMBL:AADN02042046 IPI:IPI00819761
RefSeq:XP_001231937.2 Ensembl:ENSGALT00000041115 GeneID:768808
KEGG:gga:768808 Uniprot:E1BYI6
Length = 354
Score = 120 (47.3 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 34/127 (26%), Positives = 67/127 (52%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI--- 187
+ HRLDK T+G++V+A+++ + + FK +E++Y +++ G P + G +E+P+
Sbjct: 137 LCHRLDKETTGVMVLARNKEAADRIRLLFKTRQVEKIYWAISVGSPDPAEGIVEIPMVER 196
Query: 188 ---SRDPNNRI------RMAAIPGS----NKHGQARHAASRYKVIEILAGGGSALVEWRL 234
S P+ ++ RM+ G K+ A A ++Y+V+ + +L+E +
Sbjct: 197 EVQSHQPHFKMTLAPNYRMSPEDGKVLKIRKNRNAESAVTQYRVLA--SSSACSLLELQP 254
Query: 235 ETGRTHQ 241
TG HQ
Sbjct: 255 ITGVKHQ 261
Score = 68 (29.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 57 VYEDDNVLVVNKPAHMVVHPAPG 79
VY+D+ V+V+NKP + VH PG
Sbjct: 89 VYQDEEVVVLNKPYGLPVHGGPG 111
>UNIPROTKB|P0AA39 [details] [associations]
symbol:rluC species:83333 "Escherichia coli K-12"
[GO:0000455 "enzyme-directed rRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 Gene3D:3.10.290.10
eggNOG:COG0564 TIGRFAMs:TIGR00005 GO:GO:0000455 EMBL:M62747
EMBL:M96791 PIR:C64852 RefSeq:NP_415604.1 RefSeq:YP_489354.1
PDB:1V9K PDB:1XPI PDBsum:1V9K PDBsum:1XPI ProteinModelPortal:P0AA39
SMR:P0AA39 DIP:DIP-47832N IntAct:P0AA39 PRIDE:P0AA39
EnsemblBacteria:EBESCT00000000214 EnsemblBacteria:EBESCT00000014626
GeneID:12932031 GeneID:945637 KEGG:ecj:Y75_p1056 KEGG:eco:b1086
PATRIC:32117413 EchoBASE:EB1108 EcoGene:EG11118
HOGENOM:HOG000275914 KO:K06179 OMA:HAANIKF ProtClustDB:PRK11025
BioCyc:EcoCyc:EG11118-MONOMER BioCyc:ECOL316407:JW1072-MONOMER
BioCyc:MetaCyc:EG11118-MONOMER EvolutionaryTrace:P0AA39
Genevestigator:P0AA39 Uniprot:P0AA39
Length = 319
Score = 109 (43.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 34/112 (30%), Positives = 57/112 (50%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+VHRLD+ TSG+L+VAK + L EQ + +++ Y++L G ++ P+ ++
Sbjct: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKN 198
Query: 191 P-NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R+ + K + +R+KV E A + LV TGRTHQ
Sbjct: 199 ILQSGERIVRVSQEGKPSE-----TRFKVEERYAF--ATLVRCSPVTGRTHQ 243
Score = 78 (32.5 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 56 IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 89
I+YEDD++LV+NKP+ VH G + G ++ G+
Sbjct: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGL 127
>UNIPROTKB|E9PML2 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 CTD:84881
UniGene:Hs.150458 GeneID:84881 KEGG:hsa:84881 HGNC:HGNC:25898
GenomeRNAi:84881 NextBio:75193 EMBL:AP001893 IPI:IPI00921381
RefSeq:NP_001138299.1 ProteinModelPortal:E9PML2 SMR:E9PML2
Ensembl:ENST00000533628 UCSC:uc009zbz.3 ArrayExpress:E9PML2
Bgee:E9PML2 Uniprot:E9PML2
Length = 346
Score = 104 (41.7 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 187
+ HRLDK T+G++V+A D+ + E F+ + + Y ++T VP S+G +++PI
Sbjct: 148 LCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPI 204
Score = 67 (28.6 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
A+ + I+++D N++V+NKP + VH PG
Sbjct: 92 AKALTRGILHQDKNLVVINKPYGLPVHGGPG 122
Score = 43 (20.2 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+A+ A ++Y+V+ SALVE + TG HQ
Sbjct: 208 EAQVAVTQYQVLSSTLS--SALVELQPITGIKHQ 239
>TIGR_CMR|CBU_0487 [details] [associations]
symbol:CBU_0487 "ribosomal large subunit pseudouridine
synthase C" species:227377 "Coxiella burnetii RSA 493" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 Pfam:PF01479 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 TIGRFAMs:TIGR00005
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_338279.1
ProteinModelPortal:Q4AAY1 GeneID:1208371 KEGG:cbu:CBU_0487
PATRIC:17929665 OMA:ERWPDYA ProtClustDB:CLSK940424
BioCyc:CBUR227377:GJ7S-484-MONOMER Uniprot:Q4AAY1
Length = 308
Score = 111 (44.1 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 34/112 (30%), Positives = 58/112 (51%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+VHRLD+ TSG L+VAK + L + + Y+ L G R+EVP+ ++
Sbjct: 133 LVHRLDRETSGCLMVAKKRSTLVALHTLLTQRKVIKQYLLLVKGQWQGGECRVEVPLKKN 192
Query: 191 P-NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ RM + K G++ A + ++ ++I ++L+E + TGRTHQ
Sbjct: 193 RLQSGERMVKV---EKEGKS--AVTVFRPLKIFEQ--ASLIEAKPLTGRTHQ 237
Score = 63 (27.2 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 52 IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ + I+YE+ ++LV++KPA + VH G G +
Sbjct: 85 LEMRILYEEADLLVIDKPAGLPVHGGSGIQGGVI 118
>UNIPROTKB|Q96CM3 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9606 "Homo sapiens"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0005739 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:AK027400 EMBL:BC014131 IPI:IPI00304069
RefSeq:NP_116184.2 UniGene:Hs.150458 ProteinModelPortal:Q96CM3
SMR:Q96CM3 STRING:Q96CM3 PhosphoSite:Q96CM3 DMDM:74731354
PaxDb:Q96CM3 PRIDE:Q96CM3 Ensembl:ENST00000298317 GeneID:84881
KEGG:hsa:84881 UCSC:uc001qde.3 GeneCards:GC11M126071
HGNC:HGNC:25898 HPA:HPA039689 neXtProt:NX_Q96CM3
PharmGKB:PA134875000 InParanoid:Q96CM3 PhylomeDB:Q96CM3
GenomeRNAi:84881 NextBio:75193 ArrayExpress:Q96CM3 Bgee:Q96CM3
CleanEx:HS_RPUSD4 Genevestigator:Q96CM3 Uniprot:Q96CM3
Length = 377
Score = 110 (43.8 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI--- 187
+ HRLDK T+G++V+A D+ + E F+ + + Y ++T VP S+G +++PI
Sbjct: 148 LCHRLDKETTGVMVLAWDKDMAHQVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPIVEK 207
Query: 188 -SRDPNNRIRMAAIPGSN-------KHGQARHAASRYKVIEILAGG-GSALVEWRLETGR 238
++ +M P K ++R+A ++L+ SALVE + TG
Sbjct: 208 EAQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSSALVELQPITGI 267
Query: 239 THQ 241
HQ
Sbjct: 268 KHQ 270
Score = 67 (28.6 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
A+ + I+++D N++V+NKP + VH PG
Sbjct: 92 AKALTRGILHQDKNLVVINKPYGLPVHGGPG 122
>RGD|1311268 [details] [associations]
symbol:Rpusd4 "RNA pseudouridylate synthase domain containing 4"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 RGD:1311268 GO:GO:0005739
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00530000063800 CTD:84881
HOVERGEN:HBG054698 HOGENOM:HOG000136349 OMA:SKARYIP
OrthoDB:EOG4FFD2H EMBL:BC098023 IPI:IPI00362584
RefSeq:NP_001020455.1 UniGene:Rn.232042 ProteinModelPortal:Q4QQT0
PRIDE:Q4QQT0 Ensembl:ENSRNOT00000015670 GeneID:315550
KEGG:rno:315550 UCSC:RGD:1311268 InParanoid:Q4QQT0 NextBio:669410
Genevestigator:Q4QQT0 Uniprot:Q4QQT0
Length = 377
Score = 110 (43.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 37/125 (29%), Positives = 63/125 (50%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+ HRLDK T+G++V+A ++ + E F+ +E+ Y ++T VP S+G +++PI
Sbjct: 148 LCHRLDKETTGVMVLAWEKDMAHQVQELFRTRQVEKKYWAITVRVPLPSAGVVDIPIMEK 207
Query: 191 P----NNRIRMAAIPG----SNKHGQAR-----HAA-SRYKVIEILAGGGSALVEWRLET 236
+M P + K + R H A ++Y+V+ + SALVE + T
Sbjct: 208 EVAGQQQHHKMTLRPSYRMDNGKMVKVRASRDAHVAVTQYQVLS--STPSSALVELQPVT 265
Query: 237 GRTHQ 241
G HQ
Sbjct: 266 GIKHQ 270
Score = 65 (27.9 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
A+++ I+++D +++V+NKP + VH PG
Sbjct: 92 AKELSRRILHQDKDLVVINKPYGLPVHGGPG 122
>TIGR_CMR|GSU_0671 [details] [associations]
symbol:GSU_0671 "ribosomal large subunit pseudouridine
synthase C" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0009982
"pseudouridine synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS50889
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275919 KO:K06179
RefSeq:NP_951728.1 ProteinModelPortal:Q74FD8 GeneID:2685543
KEGG:gsu:GSU0671 PATRIC:22024099 OMA:MKIEIGA ProtClustDB:CLSK827983
BioCyc:GSUL243231:GH27-690-MONOMER Uniprot:Q74FD8
Length = 296
Score = 101 (40.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG-VPSQSSGR 182
G +++ V+RLD+GTSG ++AK S L K ++++Y+++T G +P +G
Sbjct: 121 GTAVKLRPVNRLDRGTSGATILAKSSSSAGMLGRYVKEEGLDKLYLAVTDGSLPD--AGT 178
Query: 183 IEVPIS-RDPNNRIRMAA 199
I+ P+ +D + R A
Sbjct: 179 IDTPLDGKDAHTDFRTLA 196
Score = 71 (30.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVH 75
LDI++EDD ++VNKPA + VH
Sbjct: 78 LDILWEDDYCVIVNKPAGLPVH 99
>TIGR_CMR|GSU_3160 [details] [associations]
symbol:GSU_3160 "RNA pseudouridine synthase family
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HOGENOM:HOG000275920 KO:K06175
OMA:FANHSIE RefSeq:NP_954201.1 ProteinModelPortal:Q747V5
GeneID:2686768 KEGG:gsu:GSU3160 PATRIC:22029179
ProtClustDB:CLSK763245 BioCyc:GSUL243231:GH27-3194-MONOMER
Uniprot:Q747V5
Length = 250
Score = 107 (42.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 38/123 (30%), Positives = 58/123 (47%)
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG-VPSQSSGR 182
G + P VHRLDK TSG+LV A D + L + F + + Y+++T G VP + G
Sbjct: 43 GRRVYP--VHRLDKPTSGVLVFALDPATARSLGDAFAGGRVNKTYLAVTRGIVPPE--GI 98
Query: 183 IEVPISRDPNNRIRMAAIPGSNKHGQA---RHAASRYKVIE-ILAGGGSALVEWRLETGR 238
I+ +S +P+ + P + + R A + V+ A +L E TGR
Sbjct: 99 IDHSLSEEPDRLDGAKSSPAAPQPAVTVFRRLAEAELPVVTGRYASSRYSLAELTPHTGR 158
Query: 239 THQ 241
HQ
Sbjct: 159 RHQ 161
Score = 58 (25.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVHPAP 78
++I++ D ++ V+KPA ++VH +P
Sbjct: 1 MEILFRDQYLVAVHKPAGLLVHRSP 25
>UNIPROTKB|F1S6H1 [details] [associations]
symbol:LOC100737111 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP EMBL:CU466237
EMBL:FP102836 RefSeq:XP_003482691.1 Ensembl:ENSSSCT00000016599
Ensembl:ENSSSCT00000025330 GeneID:100737111 KEGG:ssc:100737111
Uniprot:F1S6H1
Length = 376
Score = 102 (41.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 32/123 (26%), Positives = 62/123 (50%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS-- 188
+ HRLDK T+G++V+A ++ + E F+ + + Y ++T VP S+G +++PI
Sbjct: 147 LCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQVAKKYWAITVRVPVPSAGVVDIPIIEK 206
Query: 189 --RDPNNRIRMAAIPG----SNKHGQARHAASRYKVI---EILAGG-GSALVEWRLETGR 238
+ +M P + K + R + + + + ++L+ SAL+E + TG
Sbjct: 207 EVQGQQQHHKMTLCPSYRMDNGKMVRVRTSRNAHLAVTQYQVLSSTLSSALLELQPVTGI 266
Query: 239 THQ 241
HQ
Sbjct: 267 KHQ 269
Score = 68 (29.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
A+ + IV++D ++LV+NKP + VH PG
Sbjct: 91 AKALSRGIVHQDKDLLVINKPYGLPVHGGPG 121
>TIGR_CMR|CJE_0808 [details] [associations]
symbol:CJE_0808 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
RefSeq:YP_178812.1 ProteinModelPortal:Q5HV73 STRING:Q5HV73
GeneID:3230758 KEGG:cjr:CJE0808 PATRIC:20043361
HOGENOM:HOG000275921 OMA:YITSEEI ProtClustDB:CLSK872473
BioCyc:CJEJ195099:GJC0-823-MONOMER Uniprot:Q5HV73
Length = 250
Score = 109 (43.4 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 33/111 (29%), Positives = 58/111 (52%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+++RLDK TSG++++ KDE E+FK H + + YI++ GV ++ + PI
Sbjct: 88 LLNRLDKETSGVILLCKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEV-EVNEPIF-- 144
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A+ +K G + A S + I+ L + ++TGRTHQ
Sbjct: 145 -TIKAKGGALSKVSKDGLS--ALSI--ITPIMMQSKKTLAKIVIQTGRTHQ 190
Score = 53 (23.7 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 56 IVYEDDNVLVVNKP 69
I++EDD ++ +NKP
Sbjct: 59 IIFEDDKIIAINKP 72
>TIGR_CMR|NSE_0556 [details] [associations]
symbol:NSE_0556 "ribosomal large subunit pseudouridine
synthase C" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0001522
"pseudouridine synthesis" evidence=ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
PROSITE:PS50889 SMART:SM00363 GO:GO:0003723 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.10.290.10 eggNOG:COG0564
HOGENOM:HOG000275914 KO:K06179 RefSeq:YP_506438.1
ProteinModelPortal:Q2GDK8 STRING:Q2GDK8 GeneID:3931346
KEGG:nse:NSE_0556 PATRIC:22681159 OMA:DINDNNG
ProtClustDB:CLSK2527953 BioCyc:NSEN222891:GHFU-574-MONOMER
Uniprot:Q2GDK8
Length = 305
Score = 111 (44.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 126 SIRPG--IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
SI P +VHRLDK T+G+L+ AK + L F +++ Y+++ G + G +
Sbjct: 127 SINPEYRVVHRLDKHTTGVLIFAKTLDAARELWRLFSNRLVKKSYLAIVIGELKEKKGVV 186
Query: 184 EVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ I++ + + N G HA +++ VI+ ++L+E TGR HQ
Sbjct: 187 DCYINKV---LFKGEEVMQCNNIGNGEHAITQFHVIKKFKN--TSLIELFPLTGRKHQ 239
Score = 54 (24.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 56 IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 89
++YED+NVL ++KP V G T ++ N +
Sbjct: 93 MLYEDENVLAISKPFGFPVQSGYG-ITASIDNAM 125
>DICTYBASE|DDB_G0285543 [details] [associations]
symbol:DDB_G0285543 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
dictyBase:DDB_G0285543 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
RefSeq:XP_638115.1 STRING:Q54N28 EnsemblProtists:DDB0186558
GeneID:8625163 KEGG:ddi:DDB_G0285543 InParanoid:Q54N28 OMA:WPETGRT
ProtClustDB:CLSZ2846710 Uniprot:Q54N28
Length = 718
Score = 80 (33.2 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 23/78 (29%), Positives = 34/78 (43%)
Query: 164 IERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILA 223
I++ Y +L P+ GRI P+ + +P A+ A + YKV+E
Sbjct: 559 IKKTYWALLGSTPTPKEGRIRAPLKKVVVGGFEKV-VPTLTTGDGAKIAITEYKVLESSL 617
Query: 224 GGGSALVEWRLETGRTHQ 241
+ W ETGRTHQ
Sbjct: 618 TKHCFISLWP-ETGRTHQ 634
Score = 77 (32.2 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 12/37 (32%), Positives = 28/37 (75%)
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIE 165
P +VHRLD+ TSG+L++ + + + + ++++F+L ++
Sbjct: 473 PKLVHRLDRNTSGILILGRSKLAASAMTKKFELKLVK 509
Score = 59 (25.8 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 48 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
E ++I ++Y+D++++V+NKP + V G
Sbjct: 422 EIKEIRESVLYKDEHIIVLNKPQGLSVQGGTG 453
>UNIPROTKB|E2R2N3 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Ensembl:ENSCAFT00000035707 Uniprot:E2R2N3
Length = 305
Score = 104 (41.7 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 34/125 (27%), Positives = 60/125 (48%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISR- 189
+ HRLDK T+G++V+A ++ + E F+ + + Y ++T VP S+G +++PI+
Sbjct: 149 LCHRLDKETTGVMVLAWEKEVAHQVQEFFRTRQVAKKYWAITVRVPVPSAGVVDIPITEK 208
Query: 190 -------------DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLET 236
P+ R+ + + A A ++Y V+ SALVE + T
Sbjct: 209 AVQGQQQHYKMTLSPDYRMDNGKMVRVRSNRNAHIAVTQYHVLSSTLS--SALVELQPIT 266
Query: 237 GRTHQ 241
G HQ
Sbjct: 267 GIKHQ 271
Score = 61 (26.5 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
A+ + ++++D +++V+NKP + VH PG
Sbjct: 93 AKALSRGVLHQDKDLVVINKPYGLPVHGGPG 123
>WB|WBGene00019498 [details] [associations]
symbol:K07E8.7 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802 OMA:HLNEEPV
EMBL:FO081602 PIR:T32044 RefSeq:NP_493778.1
ProteinModelPortal:O16686 SMR:O16686 STRING:O16686 PaxDb:O16686
EnsemblMetazoa:K07E8.7 GeneID:173456 KEGG:cel:CELE_K07E8.7
UCSC:K07E8.7 CTD:173456 WormBase:K07E8.7 HOGENOM:HOG000155606
InParanoid:O16686 NextBio:879741 Uniprot:O16686
Length = 432
Score = 102 (41.0 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 33/111 (29%), Positives = 52/111 (46%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
++HRLD+ TSG+L+ AK+ + K + YI GV E PI
Sbjct: 194 VLHRLDRATSGVLLFAKNYETDLEFKTTLKQGEWSKEYICKVDGVFPDEEQVCEQPIG-- 251
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
P + I G + A SR++ ++ + G ++V+ +ETGRTHQ
Sbjct: 252 P--LVISMGIQCVRPDG--KDAKSRFR--KLWSDGTQSVVQVHIETGRTHQ 296
Score = 66 (28.3 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 18/73 (24%), Positives = 40/73 (54%)
Query: 16 LFLSMDKLS-VSHNVKGGDMVNCTISELQ-PLRAEAEDIPLDIVYEDDNVLVVNKPAHMV 73
++++ ++++ V + ++ GD V + P+R D+P+ ++ E D++ VV KP +
Sbjct: 112 IYVNGEQMTDVDYVMRNGDRVEHWAHRHEHPIR----DLPIRVISETDDLFVVEKPPSLP 167
Query: 74 VHPAPGNATGTLV 86
VH A T++
Sbjct: 168 VHTCGQYAIHTVL 180
>UNIPROTKB|F6XEH2 [details] [associations]
symbol:RPUSD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
GeneTree:ENSGT00530000063800 OMA:SKARYIP Ensembl:ENSCAFT00000035707
EMBL:AAEX03003379 ProteinModelPortal:F6XEH2 Uniprot:F6XEH2
Length = 378
Score = 104 (41.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 34/125 (27%), Positives = 60/125 (48%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISR- 189
+ HRLDK T+G++V+A ++ + E F+ + + Y ++T VP S+G +++PI+
Sbjct: 149 LCHRLDKETTGVMVLAWEKEVAHQVQEFFRTRQVAKKYWAITVRVPVPSAGVVDIPITEK 208
Query: 190 -------------DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLET 236
P+ R+ + + A A ++Y V+ SALVE + T
Sbjct: 209 AVQGQQQHYKMTLSPDYRMDNGKMVRVRSNRNAHIAVTQYHVLSSTLS--SALVELQPIT 266
Query: 237 GRTHQ 241
G HQ
Sbjct: 267 GIKHQ 271
Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
A+ + ++++D +++V+NKP + VH PG
Sbjct: 93 AKALSRGVLHQDKDLVVINKPYGLPVHGGPG 123
>UNIPROTKB|Q9KRH4 [details] [associations]
symbol:VC1668 "Pseudouridine synthase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0009451 KO:K06177 OMA:GWVIGDM
InterPro:IPR006508 TIGRFAMs:TIGR01621 EMBL:AE004244 PIR:E82173
RefSeq:NP_231304.1 ProteinModelPortal:Q9KRH4 DNASU:2613799
GeneID:2613799 KEGG:vch:VC1668 PATRIC:20082398
ProtClustDB:CLSK2298316 Uniprot:Q9KRH4
Length = 235
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 31/111 (27%), Positives = 56/111 (50%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+VHRLDK TSG+L++A++ + + LS+ F +E+ Y+++ S P + G I + R
Sbjct: 46 LVHRLDKMTSGILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERS 105
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ ++ + Q A +++ A G L + TG+THQ
Sbjct: 106 RRSSWKLV-------NSQENPAITQF--FSAAAATGERLFLCKPHTGKTHQ 147
Score = 42 (19.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 55 DIVYEDDNVLVVNKPAHMVVHPAPGN 80
DI++ + L++NK ++ VH G+
Sbjct: 3 DILFTHPDFLLINKHPNVSVHKDDGD 28
>TIGR_CMR|VC_1668 [details] [associations]
symbol:VC_1668 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 GO:GO:0009451 KO:K06177 OMA:GWVIGDM
InterPro:IPR006508 TIGRFAMs:TIGR01621 EMBL:AE004244 PIR:E82173
RefSeq:NP_231304.1 ProteinModelPortal:Q9KRH4 DNASU:2613799
GeneID:2613799 KEGG:vch:VC1668 PATRIC:20082398
ProtClustDB:CLSK2298316 Uniprot:Q9KRH4
Length = 235
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 31/111 (27%), Positives = 56/111 (50%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+VHRLDK TSG+L++A++ + + LS+ F +E+ Y+++ S P + G I + R
Sbjct: 46 LVHRLDKMTSGILLLARNATAASELSQGFAKRKVEKFYLAIGSKKPKKKQGLICGDMERS 105
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ ++ + Q A +++ A G L + TG+THQ
Sbjct: 106 RRSSWKLV-------NSQENPAITQF--FSAAAATGERLFLCKPHTGKTHQ 147
Score = 42 (19.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 55 DIVYEDDNVLVVNKPAHMVVHPAPGN 80
DI++ + L++NK ++ VH G+
Sbjct: 3 DILFTHPDFLLINKHPNVSVHKDDGD 28
>UNIPROTKB|Q9KTL4 [details] [associations]
symbol:truC "tRNA pseudouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 87 (35.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 31/119 (26%), Positives = 60/119 (50%)
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
+HRLD+ TSG+LV A + + F H +E+ Y ++ G +++ ++ P+ +
Sbjct: 50 LHRLDRPTSGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEANV-LDYPLKEE- 107
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKV---IEI-LAGGGSA-----LVEWRLETGRTHQ 241
+ A + + +A+ A + Y+ +E+ +A G A L+E + +TGR HQ
Sbjct: 108 ---LDKIADKFAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQ 163
Score = 73 (30.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVH 75
L+IVY+D+ ++ VNKPA M+VH
Sbjct: 2 LEIVYQDEYLVAVNKPAGMLVH 23
>TIGR_CMR|VC_0888 [details] [associations]
symbol:VC_0888 "pseudouridine synthase Rlu family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GO:GO:0009451 eggNOG:COG0564
KO:K06175 ProtClustDB:PRK11112 PIR:G82266 RefSeq:NP_230535.1
ProteinModelPortal:Q9KTL4 DNASU:2614117 GeneID:2614117
KEGG:vch:VC0888 PATRIC:20080874 OMA:FANHSIE Uniprot:Q9KTL4
Length = 244
Score = 87 (35.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 31/119 (26%), Positives = 60/119 (50%)
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
+HRLD+ TSG+LV A + + F H +E+ Y ++ G +++ ++ P+ +
Sbjct: 50 LHRLDRPTSGVLVFALSSQIASEVMPMFANHEMEKTYHAIVRGWIEEANV-LDYPLKEE- 107
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKV---IEI-LAGGGSA-----LVEWRLETGRTHQ 241
+ A + + +A+ A + Y+ +E+ +A G A L+E + +TGR HQ
Sbjct: 108 ---LDKIADKFAKQDKEAQSAVTAYRPLAKVELPIATGKFATTRYCLMEMQPKTGRKHQ 163
Score = 73 (30.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 13/22 (59%), Positives = 19/22 (86%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVH 75
L+IVY+D+ ++ VNKPA M+VH
Sbjct: 2 LEIVYQDEYLVAVNKPAGMLVH 23
>UNIPROTKB|Q5E9Z1 [details] [associations]
symbol:RPUSD4 "RNA pseudouridylate synthase
domain-containing protein 4" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0005739 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39
eggNOG:COG0564 GeneTree:ENSGT00530000063800 EMBL:BT020717
EMBL:BT020773 EMBL:BT020778 EMBL:BT021642 EMBL:BT021761
EMBL:BT025340 EMBL:BT025483 EMBL:BT026244 EMBL:BC134590
IPI:IPI00713333 RefSeq:NP_001015616.1 UniGene:Bt.31431
ProteinModelPortal:Q5E9Z1 Ensembl:ENSBTAT00000027843 GeneID:516934
KEGG:bta:516934 CTD:84881 HOVERGEN:HBG054698 InParanoid:Q5E9Z1
NextBio:20872338 Uniprot:Q5E9Z1
Length = 377
Score = 98 (39.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 124 GASIRP-GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGR 182
G +P + HRLDK T+G++V+A ++ + E F+ + + Y ++T VP +G
Sbjct: 140 GPKAKPLHLCHRLDKETTGVMVLAWEKEVAHQVQELFRTRQVTKKYWAITVRVPVPEAGV 199
Query: 183 IEVPI 187
+++PI
Sbjct: 200 VDIPI 204
Score = 64 (27.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
A+ + IV++D ++V+NKP + VH PG
Sbjct: 92 AKALSRGIVHQDKELVVINKPYGLPVHGGPG 122
>UNIPROTKB|G4MYD1 [details] [associations]
symbol:MGG_08117 "DRAP deaminase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR006145 InterPro:IPR006224
InterPro:IPR006225 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
GO:GO:0003723 EMBL:CM001232 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 KO:K15454 RefSeq:XP_003715073.1
ProteinModelPortal:G4MYD1 EnsemblFungi:MGG_08117T0 GeneID:2678399
KEGG:mgr:MGG_08117 Uniprot:G4MYD1
Length = 487
Score = 96 (38.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
++ ++ K+ +H +K G+++ +P A+ P+ +++EDD ++V+NKP+ M V
Sbjct: 116 SVLVNAKKVGPNHILKNGELIAHICHRHEP-PCTAD--PVQVLHEDDEMIVINKPSGMPV 172
Query: 75 HPA 77
HPA
Sbjct: 173 HPA 175
Score = 68 (29.0 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
+RLD+ TSG++ +AK + + EQ T+ + Y++ G G + I +P
Sbjct: 201 NRLDRLTSGIMFIAKTPQAACKMGEQIMGRTVRKEYLARVIG--RFPDGEV---ICNEPI 255
Query: 193 NRIRMAAIPGSNK-HGQARHAASRYK 217
++++ G N+ RHA + +K
Sbjct: 256 --LQISPKLGLNRVRANGRHARTVFK 279
>MGI|MGI:1919186 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain
containing 1" species:10090 "Mus musculus" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 MGI:MGI:1919186
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
HSSP:P0AA39 eggNOG:COG0564 GeneTree:ENSGT00510000048339 CTD:113000
HOGENOM:HOG000047212 HOVERGEN:HBG096261 OrthoDB:EOG4RXZ10
EMBL:AK049334 EMBL:BC018186 IPI:IPI00165813 RefSeq:NP_082285.1
UniGene:Mm.24603 ProteinModelPortal:Q8VCZ8 SMR:Q8VCZ8 STRING:Q8VCZ8
PhosphoSite:Q8VCZ8 PRIDE:Q8VCZ8 Ensembl:ENSMUST00000047273
GeneID:106707 KEGG:mmu:106707 UCSC:uc008bbl.1 InParanoid:Q8VCZ8
OMA:QESITHY NextBio:358344 Bgee:Q8VCZ8 CleanEx:MM_RPUSD1
Genevestigator:Q8VCZ8 Uniprot:Q8VCZ8
Length = 306
Score = 98 (39.6 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 32/112 (28%), Positives = 52/112 (46%)
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
H+LD TSG L VA ++ + + FK + + Y++L G +S I I R+
Sbjct: 64 HQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNST 123
Query: 193 N-RIRMAAIPGSNKHGQARHAASRYKVIE--ILAGGGSALVEWRLETGRTHQ 241
R I G++ + + + V+E + AG + V + TGRTHQ
Sbjct: 124 EGRTHTMCIEGTHGCENPKPSLTELLVLEHGLYAGDPVSKVLLKPLTGRTHQ 175
Score = 58 (25.5 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 99
L IVY+ + LVVNK + + T TL + HH P LA
Sbjct: 9 LSIVYQSSDFLVVNKHWDLRIDSKTWRETLTLQKQLRHH--FPELA 52
>CGD|CAL0004292 [details] [associations]
symbol:orf19.2788 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 88 (36.0 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 34/112 (30%), Positives = 52/112 (46%)
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQF---KLHTIERVYISLTSGVPSQSSGRIEVPISR 189
HRLDK TSG+LV+AK ++ S+ K HT E+ Y++ SG + R PI
Sbjct: 155 HRLDKVTSGVLVLAKTKNGGVRFSKLMRDSKQHT-EKTYLARVSGKFPEGIHRYRCPIFA 213
Query: 190 DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N M+ N + + ++ I+ A +LV+ TG+ HQ
Sbjct: 214 VNMNGYLMSG----NMEELPTDSTTIFERIKYNASLDQSLVKCVPITGKFHQ 261
Score = 72 (30.4 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 57 VYEDDNVLVVNKPAHMVVHPAPGN 80
VYEDD +LVV+KP+ + HP GN
Sbjct: 110 VYEDDEILVVDKPSGIPTHPT-GN 132
>UNIPROTKB|Q59PV5 [details] [associations]
symbol:CaO19.2788 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
CGD:CAL0004292 GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 EMBL:AACQ01000185 RefSeq:XP_711730.1
ProteinModelPortal:Q59PV5 STRING:Q59PV5 GeneID:3646675
KEGG:cal:CaO19.2788 Uniprot:Q59PV5
Length = 402
Score = 88 (36.0 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 34/112 (30%), Positives = 52/112 (46%)
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQF---KLHTIERVYISLTSGVPSQSSGRIEVPISR 189
HRLDK TSG+LV+AK ++ S+ K HT E+ Y++ SG + R PI
Sbjct: 155 HRLDKVTSGVLVLAKTKNGGVRFSKLMRDSKQHT-EKTYLARVSGKFPEGIHRYRCPIFA 213
Query: 190 DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N M+ N + + ++ I+ A +LV+ TG+ HQ
Sbjct: 214 VNMNGYLMSG----NMEELPTDSTTIFERIKYNASLDQSLVKCVPITGKFHQ 261
Score = 72 (30.4 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 57 VYEDDNVLVVNKPAHMVVHPAPGN 80
VYEDD +LVV+KP+ + HP GN
Sbjct: 110 VYEDDEILVVDKPSGIPTHPT-GN 132
>RGD|1304934 [details] [associations]
symbol:Rpusd1 "RNA pseudouridylate synthase domain containing 1"
species:10116 "Rattus norvegicus" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
RGD:1304934 GO:GO:0003723 EMBL:CH473948 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0564 GeneTree:ENSGT00510000048339
CTD:113000 HOGENOM:HOG000047212 HOVERGEN:HBG096261 OMA:MMLHAHL
OrthoDB:EOG4RXZ10 EMBL:BC161966 IPI:IPI00369268
RefSeq:NP_001099244.1 UniGene:Rn.98412 STRING:B1WC14
Ensembl:ENSRNOT00000015206 GeneID:287148 KEGG:rno:287148
UCSC:RGD:1304934 NextBio:625615 Genevestigator:B1WC14
Uniprot:B1WC14
Length = 306
Score = 95 (38.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 31/112 (27%), Positives = 52/112 (46%)
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
H+LD TSG L VA ++ + + FK + + Y++L G +S I I R+
Sbjct: 64 HQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESQVTINYAIGRNST 123
Query: 193 N-RIRMAAIPGSNKHGQARHAASRYKVIE--ILAGGGSALVEWRLETGRTHQ 241
R I G++ + + + V+E + +G + V + TGRTHQ
Sbjct: 124 EGRTHTMCIEGTHGCENPKPSLTELLVLEHGLYSGDPVSKVLLKPLTGRTHQ 175
Score = 59 (25.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 99
L IVY+ ++ LVVNK + + T TL + HH P LA
Sbjct: 9 LSIVYQSNDFLVVNKHWDLRIDSKTWRETLTLQKQLRHH--FPELA 52
>SGD|S000003401 [details] [associations]
symbol:PUS6 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IMP;IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129
SGD:S000003401 GO:GO:0005739 EMBL:BK006941 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 RefSeq:NP_011690.3 GeneID:853085
KEGG:sce:YGR174C RefSeq:NP_011685.3 GeneID:853079 KEGG:sce:YGR169C
KO:K15453 GO:GO:0031119 eggNOG:COG0564 EMBL:Z72954 PIR:S64480
ProteinModelPortal:P53294 SMR:P53294 DIP:DIP-5429N MINT:MINT-544439
STRING:P53294 PaxDb:P53294 PeptideAtlas:P53294 EnsemblFungi:YGR169C
CYGD:YGR169c GeneTree:ENSGT00510000048339 HOGENOM:HOG000167783
OMA:KWYLARV OrthoDB:EOG40CMS0 BioCyc:MetaCyc:MONOMER-16704
NextBio:973044 Genevestigator:P53294 GermOnline:YGR169C
Uniprot:P53294
Length = 404
Score = 82 (33.9 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 48 EAEDIP-----LDIVYEDDNVLVVNKPAHMVVHP 76
EAED+P +IV+ED+++LV++KP+ + VHP
Sbjct: 108 EAEDLPGRIAGFNIVFEDESILVIDKPSGIPVHP 141
Score = 77 (32.2 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 28/122 (22%), Positives = 51/122 (41%)
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG-VPSQ-----SSGRIEVP 186
+RLDK TSGLL++AK+ S + + + + ++Y++ G P + E
Sbjct: 165 YRLDKITSGLLILAKNSQSAGEIQKSIRSRDMIKIYLARVKGRFPHSELILDNENAAETT 224
Query: 187 ISRDPNNRIRMAAIPGSNKHGQ-------ARHAASRYKVIEILAGGGSALVEWRLETGRT 239
+ M I + Q ++ A +++ I + +V + TGRT
Sbjct: 225 FEDTSKVTVEMTPIYSIDPKRQFPVGLSTSKDAITKFYPIRYFSHADETVVACKPITGRT 284
Query: 240 HQ 241
HQ
Sbjct: 285 HQ 286
>FB|FBgn0051719 [details] [associations]
symbol:RluA-1 "RluA-1" species:7227 "Drosophila melanogaster"
[GO:0008835 "diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR020103 Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564
TIGRFAMs:TIGR00005 EMBL:BT003451 ProteinModelPortal:Q86P70
SMR:Q86P70 STRING:Q86P70 PaxDb:Q86P70 PRIDE:Q86P70
FlyBase:FBgn0051719 InParanoid:Q86P70 OrthoDB:EOG473N6H
ArrayExpress:Q86P70 Bgee:Q86P70 Uniprot:Q86P70
Length = 739
Score = 87 (35.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 16 LFLSMDKLSVSHNVKGGDMV-NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
L ++ +K+ + + +K D++ N P+ + P+ IV+ D++++VVNKPA + V
Sbjct: 342 LTVNFEKVPIDYRLKHNDLLANIVHRHEVPVTCQ----PIKIVHMDEDIVVVNKPASIPV 397
Query: 75 HPAPGNATGTLV 86
HP T+V
Sbjct: 398 HPCGRYRHNTVV 409
Score = 77 (32.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGV 175
+HRLD+ TSGLL+ + + +Q + +E+ YI GV
Sbjct: 424 IHRLDRLTSGLLLFGRSPKKARQMEQQIRNRQVEKEYICRVEGV 467
>UNIPROTKB|E2R7K0 [details] [associations]
symbol:RPUSD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR006145
InterPro:IPR020103 Pfam:PF00849 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 GeneTree:ENSGT00510000048339
CTD:113000 OMA:MMLHAHL EMBL:AAEX03004670 RefSeq:XP_547206.2
ProteinModelPortal:E2R7K0 Ensembl:ENSCAFT00000031177 GeneID:490085
KEGG:cfa:490085 NextBio:20863184 Uniprot:E2R7K0
Length = 302
Score = 95 (38.5 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
H+LD TSG L VA ++ + + FK + + Y++L G +S I I R+
Sbjct: 64 HQLDFSTSGALCVALNKAAAGSAYKCFKERRVTKAYLALVRGHVQESRMTINYAIGRNST 123
Query: 193 N-RIRMAAIPGSNKHGQARHAASRYKVIE--ILAGGGSALVEWRLETGRTHQ 241
R I G+ + + + V+E + AG + V + TGRTHQ
Sbjct: 124 EGRAHTMCIEGTEGCENPKPSLTELVVLEHGLYAGDPVSKVLLQPLTGRTHQ 175
Score = 56 (24.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLA 99
L +VY+ + LVVNK + + T TL + HH P LA
Sbjct: 9 LSVVYQSRDFLVVNKHWDLRIDSRMWRETPTLQKQLRHH--FPELA 52
>TIGR_CMR|CJE_0022 [details] [associations]
symbol:CJE_0022 "RNA pseudouridine synthase family
protein" species:195099 "Campylobacter jejuni RM1221" [GO:0009451
"RNA modification" evidence=ISS] [GO:0009982 "pseudouridine
synthase activity" evidence=ISS] InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363
GO:GO:0003723 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0564 KO:K06180
HOGENOM:HOG000275921 RefSeq:YP_178049.1 ProteinModelPortal:Q5HXD6
STRING:Q5HXD6 GeneID:3230677 KEGG:cjr:CJE0022 PATRIC:20041733
OMA:DFAHARV ProtClustDB:CLSK872338
BioCyc:CJEJ195099:GJC0-21-MONOMER Uniprot:Q5HXD6
Length = 300
Score = 103 (41.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 32/114 (28%), Positives = 59/114 (51%)
Query: 131 IVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRD 190
+ HRLDK TSGL++VAK++ + L F+ +++ Y++L +G + + I+ I+
Sbjct: 114 VAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANG-KIEENFIIDKAINLA 172
Query: 191 PNN---RIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N + RM K G + A + ++++E + L+ + TGR HQ
Sbjct: 173 KNYDDVKTRMQIC----KEG--KQAITEFEILEYFPKINATLLLCKPLTGRQHQ 220
Score = 46 (21.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 54 LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
++IV+E+++ ++ K + ++ HP + +L + I H
Sbjct: 69 VEIVFENEDFAILEKESGILSHPNGRHCKYSLSDEIWH 106
>TAIR|locus:2090689 [details] [associations]
symbol:AT3G19440 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISS;TAS]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR006145 InterPro:IPR020103 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB025624 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 HSSP:P0AA39 eggNOG:COG0564
HOGENOM:HOG000242909 EMBL:AK228911 EMBL:BT030392 IPI:IPI00521714
RefSeq:NP_188575.1 UniGene:At.38404 ProteinModelPortal:Q9LT72
SMR:Q9LT72 STRING:Q9LT72 PaxDb:Q9LT72 PRIDE:Q9LT72
EnsemblPlants:AT3G19440.1 GeneID:821478 KEGG:ath:AT3G19440
TAIR:At3g19440 InParanoid:Q9LT72 OMA:GEKMLCI PhylomeDB:Q9LT72
ProtClustDB:CLSN2684585 Genevestigator:Q9LT72 Uniprot:Q9LT72
Length = 477
Score = 115 (45.5 bits), Expect = 0.00030, P = 0.00030
Identities = 38/129 (29%), Positives = 62/129 (48%)
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHT--------------IERVYISLTSG 174
P +VHRLD+ SGLLV+A+ + + L F+ T ++R Y++L G
Sbjct: 229 PRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIG 288
Query: 175 VPSQSSGRIEVPISRD--PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEW 232
P + G+I P+ + + + + + + +HA + Y+VIE G + L E
Sbjct: 289 CPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWL-EL 347
Query: 233 RLETGRTHQ 241
R TGR HQ
Sbjct: 348 RPLTGRKHQ 356
>POMBASE|SPAC18B11.02c [details] [associations]
symbol:SPAC18B11.02c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0009982
"pseudouridine synthase activity" evidence=ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=ISO] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 PomBase:SPAC18B11.02c GO:GO:0005829
GO:GO:0005739 GO:GO:0005634 EMBL:CU329670 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0564
TIGRFAMs:TIGR00005 HOGENOM:HOG000167783 KO:K15454 OrthoDB:EOG4BK8C8
PIR:T37912 RefSeq:NP_592881.1 ProteinModelPortal:Q09709
STRING:Q09709 EnsemblFungi:SPAC18B11.02c.1 GeneID:2542607
KEGG:spo:SPAC18B11.02c OMA:YRKNTVV NextBio:20803656 Uniprot:Q09709
Length = 394
Score = 78 (32.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 51 DIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL--HHCSL 95
D P+ IV+ED++ +V++KPA + VHP T+++ ++ + CSL
Sbjct: 102 DQPVGIVHEDESYVVIDKPAGVPVHPTGRYNHNTVLHILMKENKCSL 148
Score = 77 (32.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 30/110 (27%), Positives = 54/110 (49%)
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
+RLD+ TSGL+ +K + + ++++ Y++ G +SG + I P
Sbjct: 153 NRLDRLTSGLMFFSKSPKAAEEMRVHMISKSLKKEYVARVIG-EFPNSGEV---ICDAP- 207
Query: 193 NRIRMAAIPGSNK-HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +A G N+ H + A++ +K I G ++LV + TGRTHQ
Sbjct: 208 -LLTVAPTLGLNRIHPDGKEASTVFK--RIAFDGHTSLVLCKPLTGRTHQ 254
>UNIPROTKB|F1P0G3 [details] [associations]
symbol:RPUSD2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 TIGRFAMs:TIGR00005
GeneTree:ENSGT00420000029802 OMA:HLNEEPV EMBL:AADN02040041
IPI:IPI00585299 Ensembl:ENSGALT00000040443 Uniprot:F1P0G3
Length = 456
Score = 80 (33.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 29/110 (26%), Positives = 48/110 (43%)
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
+HRLD+ TSG+L+ AK + EQ + +E+ Y+ G + E PI
Sbjct: 181 IHRLDRMTSGVLMFAKTVEVSKRIDEQVRERQLEKEYVCRVVGEFPEHEVVCEEPILV-V 239
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ ++ + + K + Y G S++V+ TGRTHQ
Sbjct: 240 SYKVGVCRVDPKGKCCKTIFQRLSYN-------GKSSVVKCLPRTGRTHQ 282
Score = 76 (31.8 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 76
+K D + T+ +P A+ P+ I+ E+D V+VV+KP+ + VHP
Sbjct: 112 LKNNDFLRNTVHRHEP-PVTAQ--PIQILVENDEVVVVDKPSSLPVHP 156
>FB|FBgn0032256 [details] [associations]
symbol:RluA-2 "RluA-2" species:7227 "Drosophila melanogaster"
[GO:0043723 "2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone
5'-phosphate deaminase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR002942 InterPro:IPR006145
InterPro:IPR006224 InterPro:IPR006225 InterPro:IPR020103
Pfam:PF00849 PROSITE:PS01129 SMART:SM00363 EMBL:AE014134
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0564 TIGRFAMs:TIGR00005 GeneTree:ENSGT00420000029802
OrthoDB:EOG473N6H EMBL:AY058686 RefSeq:NP_609411.1 UniGene:Dm.4124
SMR:Q9VKU8 IntAct:Q9VKU8 MINT:MINT-935784 STRING:Q9VKU8
EnsemblMetazoa:FBtr0080032 GeneID:34440 KEGG:dme:Dmel_CG6187
UCSC:CG6187-RA CTD:34440 FlyBase:FBgn0032256 InParanoid:Q9VKU8
GenomeRNAi:34440 NextBio:788509 Uniprot:Q9VKU8
Length = 547
Score = 86 (35.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQ-PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
L ++ +K+ + +K D++ + + P+ ++ P+ IVY D +++VVNKPA + V
Sbjct: 181 LTVNSEKVPKDYKIKHNDLLANVVHRHEVPVTSQ----PIKIVYMDKDIVVVNKPASIPV 236
Query: 75 HPAPGNATGTLV 86
HP T+V
Sbjct: 237 HPCGRYRHNTVV 248
Score = 68 (29.0 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 174
+HRLD+ TSGLL+ + L Q + +++ Y+ G
Sbjct: 263 IHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYVCRVEG 305
>CGD|CAL0002400 [details] [associations]
symbol:orf19.3177 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0043723
"2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate
deaminase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0009231 "riboflavin biosynthetic
process" evidence=IEA] InterPro:IPR002125 InterPro:IPR002942
InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225
InterPro:IPR016193 InterPro:IPR020103 Pfam:PF00383 Pfam:PF00849
PROSITE:PS01129 PROSITE:PS50889 SMART:SM00363 CGD:CAL0002400
GO:GO:0008270 SUPFAM:SSF53927 GO:GO:0003723 GO:GO:0016787
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 TIGRFAMs:TIGR00005 eggNOG:COG0117 KO:K14655
RefSeq:XP_714595.1 RefSeq:XP_714726.1 ProteinModelPortal:Q59YK3
STRING:Q59YK3 GeneID:3643617 GeneID:3643740 KEGG:cal:CaO19.10687
KEGG:cal:CaO19.3177 Uniprot:Q59YK3
Length = 589
Score = 82 (33.9 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
++ GD+++ +P + DI IV+EDD++LV++KP + VHP G V
Sbjct: 149 LRNGDLISHRSYRREP-PVSSRDIK--IVFEDDDLLVIDKPGGIPVHPT-GRYRYNTVTK 204
Query: 89 ILHH 92
I H
Sbjct: 205 IFEH 208
Score = 73 (30.8 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 27/115 (23%), Positives = 53/115 (46%)
Query: 131 IVH---RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 187
IVH RLD+ TSGL+ + K ++ Q + + + YI+ G ++ P+
Sbjct: 213 IVHPCNRLDRLTSGLMFLGKSSKGANNMMSQIRDRNVTKEYIARVKGEFPLDRIIVDKPL 272
Query: 188 S-RDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
S + P ++ + + N + A + ++ + +++V+ TGRTHQ
Sbjct: 273 STKSP--KLTLNVVDMEN----GKEAKTEFQRVSYDPITNTSVVKCHPLTGRTHQ 321
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 241 221 0.00095 112 3 11 22 0.41 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 71
No. of states in DFA: 600 (64 KB)
Total size of DFA: 164 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.88u 0.13s 18.01t Elapsed: 00:00:01
Total cpu time: 17.89u 0.13s 18.02t Elapsed: 00:00:01
Start: Mon May 20 15:11:52 2013 End: Mon May 20 15:11:53 2013