BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026204
(241 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224065743|ref|XP_002301949.1| predicted protein [Populus trichocarpa]
gi|222843675|gb|EEE81222.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 359 bits (922), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 179/219 (81%), Positives = 194/219 (88%), Gaps = 5/219 (2%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSHNVK GD VNC ISELQPLRAE E+IPLDIVYED+NVLVVNKPAHMVVHPAPGNATGT
Sbjct: 131 VSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGT 190
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEE--FSSSISGASIRPGIVHRLDKGTSGL 142
LVNGILHHCSLPT++S QE S AED+SDD++ SS AS+RPGIVHRLDKGTSGL
Sbjct: 191 LVNGILHHCSLPTVSS--QEVLSGAEDVSDDDDEGLCSSSYAASVRPGIVHRLDKGTSGL 248
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAKDEHSHAHLSEQFKLHTI+RVY+SLT GVP+ +GRI+VPI RD +NRIRMAAI
Sbjct: 249 LVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVE 308
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N+ GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ
Sbjct: 309 PNR-GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 346
>gi|6721111|gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]
Length = 980
Score = 355 bits (911), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 182/238 (76%), Positives = 199/238 (83%), Gaps = 11/238 (4%)
Query: 9 NQVSV-LALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVN 67
NQVS+ L LF VSHNVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVN
Sbjct: 658 NQVSISLTLF------QVSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVN 711
Query: 68 KPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAE--DISDDEEFSSSIS-- 123
KPAHMVVHPAPGN TGTLVNGILHHCSLP + SN E D++ SDDEE ++S S
Sbjct: 712 KPAHMVVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSY 771
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
AS+RPGIVHRLDKGT+GLLVVAKDEHSHAHL+EQFKLHTIERVY+SLT+GVPS GRI
Sbjct: 772 AASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRI 831
Query: 184 EVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
E+PI RD +NRIRMAAIPG + G+ARHAASRYKVIE AGGGSALVEWRLETGRTHQ
Sbjct: 832 EIPIGRDSSNRIRMAAIPGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQ 889
>gi|255556673|ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223541437|gb|EEF42987.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
Length = 399
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 175/218 (80%), Positives = 192/218 (88%), Gaps = 1/218 (0%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSHNVK GD V CTISELQPLRAE ED+PLDIVYED+++LVVNKP HMVVHPAPGN TGT
Sbjct: 109 VSHNVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTGT 168
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEE-FSSSISGASIRPGIVHRLDKGTSGLL 143
LVNGILHHC+LPT+A S+QE SDAED SDD+E SS +SIRPGIVHRLDKGTSGLL
Sbjct: 169 LVNGILHHCNLPTVAISSQEVLSDAEDRSDDDERSYSSSCESSIRPGIVHRLDKGTSGLL 228
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAKDEH+HAHLSEQFK HTI+RVYISLTSGVPS +GRI++PI RD NNRIRM AIPG
Sbjct: 229 VVAKDEHAHAHLSEQFKQHTIQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMTAIPGP 288
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K G+ARHAASR+KV+E LAGGGSALVEWRLETGRTHQ
Sbjct: 289 IKQGRARHAASRFKVVETLAGGGSALVEWRLETGRTHQ 326
>gi|42572121|ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 2; AltName:
Full=RNA-uridine isomerase 2; Flags: Precursor
gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
Length = 430
Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 175/221 (79%), Positives = 191/221 (86%), Gaps = 4/221 (1%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSHNVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVNKPAHMVVHPAPGN TGT
Sbjct: 119 VSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGT 178
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAE--DISDDEEFSSSIS--GASIRPGIVHRLDKGTS 140
LVNGILHHCSLP + SN E D++ SDDEE ++S S AS+RPGIVHRLDKGT+
Sbjct: 179 LVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTT 238
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLLVVAKDEHSHAHL+EQFKLHTIERVY+SLT+GVPS GRIE+PI RD +NRIRMAAI
Sbjct: 239 GLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAI 298
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
PG + G+ARHAASRYKVIE AGGGSALVEWRLETGRTHQ
Sbjct: 299 PGGVRGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQ 339
>gi|359492029|ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
vinifera]
gi|302141717|emb|CBI18920.3| unnamed protein product [Vitis vinifera]
Length = 433
Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/221 (75%), Positives = 188/221 (85%), Gaps = 4/221 (1%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSH ++ GD VNCTISELQPLRAE EDIPLDIVYED++VLVVNKPAHMVVHPAPGNA+GT
Sbjct: 114 VSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGT 173
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS----IRPGIVHRLDKGTS 140
LVNGILHHCSLPT+A N+++ D + F++ + + IRPGIVHRLDKGTS
Sbjct: 174 LVNGILHHCSLPTVALPNRDSEEDDISDDEFNSFAAGQNCGTCETNIRPGIVHRLDKGTS 233
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLLVVAKDEHSHAHLSEQFKLH+I RVYISLTSGVP+ SGR+E+P+ RDPNNRIRM A+
Sbjct: 234 GLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAV 293
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
PG + GQARHAASRYKVIEILA GGSALVEWRLETGRTHQ
Sbjct: 294 PGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQ 334
>gi|449450654|ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
sativus]
Length = 453
Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/221 (76%), Positives = 188/221 (85%), Gaps = 5/221 (2%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSHNVK GD++NCTISELQPLRAE EDI LDIVYED++VLVVNKPAHMVVHPAPGNATGT
Sbjct: 114 VSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGT 173
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFS----SSISGASIRPGIVHRLDKGTS 140
LVN IL+HCSLP +A+S E SD+ D+SDDE S S +S A IRPGIVHRLDKGTS
Sbjct: 174 LVNAILNHCSLPMVATSTGENESDS-DVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTS 232
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLLVVAKDEHSHAHLS QFK H+IERVYISLT GVP ++GRIE+PI RDPNNRIRM AI
Sbjct: 233 GLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAI 292
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G+ + A++AASRY V+EILA GGS+LVEWRLETGRTHQ
Sbjct: 293 DGTKNNPHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQ 333
>gi|449500428|ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
chloroplastic-like [Cucumis sativus]
Length = 452
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/221 (76%), Positives = 189/221 (85%), Gaps = 6/221 (2%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSHNVK GD++NCTISELQPLRAE EDI LDIVYED++VLVVNKPAHMVVHPAPGNATGT
Sbjct: 114 VSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLVVNKPAHMVVHPAPGNATGT 173
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFS----SSISGASIRPGIVHRLDKGTS 140
LVN IL+HCSLP +A+S E SD+ D+SDDE S S +S A IRPGIVHRLDKGTS
Sbjct: 174 LVNAILNHCSLPMVATSTGENESDS-DVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTS 232
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLLVVAKDEHSHAHLS QFK H+IERVYISLT GVP ++GRIE+PI RDPNNRIRM AI
Sbjct: 233 GLLVVAKDEHSHAHLSAQFKQHSIERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAI 292
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G+N + A++AASRY V+EILA GGS+LVEWRLETGRTHQ
Sbjct: 293 DGTN-NPHAKYAASRYNVMEILAQGGSSLVEWRLETGRTHQ 332
>gi|297839485|ref|XP_002887624.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata]
gi|297333465|gb|EFH63883.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata]
Length = 930
Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 171/220 (77%), Positives = 181/220 (82%), Gaps = 15/220 (6%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSHNVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVNKPAHMVVHPAPGN TGT
Sbjct: 621 VSHNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGT 680
Query: 85 LVNGILHHCSLPTLASSNQE-AFSDAEDISDDEEF--SSSISGASIRPGIVHRLDKGTSG 141
LVNGILHHCSLP ++ SN E SD E SDDEE SSS AS+RPGIVHRLDKGT+G
Sbjct: 681 LVNGILHHCSLPCVSYSNAEDDDSDEETFSDDEEMTTSSSSYAASVRPGIVHRLDKGTTG 740
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LLVVAKDEHSHAHL+EQFKLHTIERVY GRIE+PI RD +NRIRMAAIP
Sbjct: 741 LLVVAKDEHSHAHLAEQFKLHTIERVY------------GRIEIPIGRDSSNRIRMAAIP 788
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G G+ARHAASRYKVIE AGGGSALVEWRLETGRTHQ
Sbjct: 789 GGLSGGRARHAASRYKVIETFAGGGSALVEWRLETGRTHQ 828
>gi|242097088|ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
gi|241917257|gb|EER90401.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
Length = 441
Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 166/230 (72%), Positives = 181/230 (78%), Gaps = 14/230 (6%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSH VKGGD+V+CT+SELQPLRAEAEDIPLDIVYEDD+VLVVNKPAHMVVHPAPGNA GT
Sbjct: 112 VSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNANGT 171
Query: 85 LVNGILHHCSLPTLASSNQEAFSD-AEDISDD------------EEFSSSISGASIRPGI 131
LVN ILHHC + T + + D D SDD E+ SS + A +RPGI
Sbjct: 172 LVNAILHHCKISTFTCLARSSTGDECLDSSDDDIDVFNVDQFATEDASSEVRNALVRPGI 231
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
VHRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI RVYISLT GVP+ +SGRIE I+RDP
Sbjct: 232 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGVPNPNSGRIEASIARDP 291
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NNRIRM AI GS H ARHAASRYKV E+ GGGSALVEWRLETGRTHQ
Sbjct: 292 NNRIRMIAIAGSG-HRYARHAASRYKVREVFVGGGSALVEWRLETGRTHQ 340
>gi|413943106|gb|AFW75755.1| hypothetical protein ZEAMMB73_425131 [Zea mays]
Length = 350
Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 165/230 (71%), Positives = 181/230 (78%), Gaps = 14/230 (6%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSH VKGGD+V+CT+SELQPLRAEAEDIPLDIVYEDD+VLVVNKPAHMVVHPAPGNA GT
Sbjct: 109 VSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGT 168
Query: 85 LVNGILHHCSLPTLA----SSNQEAFSDAEDISDD---------EEFSSSISGASIRPGI 131
LVN ILHHC + T SS + D+ D D E+ SS + A +RPGI
Sbjct: 169 LVNAILHHCKISTFTCLARSSAGDECPDSTDEDTDVFHVDQFAAEDVSSEVRNALVRPGI 228
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
VHRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI RVYISLT G P+ +SGRIE I+RDP
Sbjct: 229 VHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDP 288
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NNRIRM AI GS H AR+AASRYKV E+ AGGGSALVEWRLETGRTHQ
Sbjct: 289 NNRIRMTAIAGSG-HRYARNAASRYKVREVFAGGGSALVEWRLETGRTHQ 337
>gi|147771519|emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
Length = 611
Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 164/224 (73%), Positives = 184/224 (82%), Gaps = 20/224 (8%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSH ++ GD VNCTISELQPLRAE EDIPLDIVYED++V VHPAPGNA+GT
Sbjct: 270 VSHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHV----------VHPAPGNASGT 319
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG-------ASIRPGIVHRLDK 137
LVNGILHHCSLPT+A N++ S+ +DI DDE F+S +G +IRPGIVHRLDK
Sbjct: 320 LVNGILHHCSLPTVALPNRD--SEEDDILDDE-FNSFAAGQNCGTCETNIRPGIVHRLDK 376
Query: 138 GTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRM 197
GTSGLLVVAKDEHSHAHLSEQFKLH+I RVYISLTSGVP+ SGR+E+P+ RDPNNRIRM
Sbjct: 377 GTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRM 436
Query: 198 AAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A+PG + GQARHAASRYKVIEILA GGSALVEWRLETGRTHQ
Sbjct: 437 TAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQ 480
>gi|226491450|ref|NP_001140404.1| RNA binding protein [Zea mays]
gi|194699356|gb|ACF83762.1| unknown [Zea mays]
gi|413943105|gb|AFW75754.1| RNA binding protein [Zea mays]
Length = 419
Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 165/230 (71%), Positives = 181/230 (78%), Gaps = 14/230 (6%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSH VKGGD+V+CT+SELQPLRAEAEDIPLDIVYEDD+VLVVNKPAHMVVHPAPGNA GT
Sbjct: 109 VSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGT 168
Query: 85 LVNGILHHCSLPTLA----SSNQEAFSDAEDISDD---------EEFSSSISGASIRPGI 131
LVN ILHHC + T SS + D+ D D E+ SS + A +RPGI
Sbjct: 169 LVNAILHHCKISTFTCLARSSAGDECPDSTDEDTDVFHVDQFAAEDVSSEVRNALVRPGI 228
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
VHRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI RVYISLT G P+ +SGRIE I+RDP
Sbjct: 229 VHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDP 288
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NNRIRM AI GS H AR+AASRYKV E+ AGGGSALVEWRLETGRTHQ
Sbjct: 289 NNRIRMTAIAGSG-HRYARNAASRYKVREVFAGGGSALVEWRLETGRTHQ 337
>gi|195644818|gb|ACG41877.1| RNA binding protein [Zea mays]
Length = 439
Score = 323 bits (827), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 164/230 (71%), Positives = 181/230 (78%), Gaps = 14/230 (6%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSH VKGGD+V+CT+SELQPLRAEAEDIPLDIVYEDD+VLVVNKPAHMVVHPAPGNA GT
Sbjct: 109 VSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGT 168
Query: 85 LVNGILHHCSLPTLAS-SNQEAFSDAEDISDD------------EEFSSSISGASIRPGI 131
LVN ILHHC + T + A + D SD+ E+ SS + A +RPGI
Sbjct: 169 LVNAILHHCKISTFTCLARSSAGDECPDSSDEDTDVFHVDQFAAEDVSSEVRNALVRPGI 228
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
VHRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI RVYISLT G P+ +SGRIE I+RDP
Sbjct: 229 VHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDP 288
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NNRIRM AI GS H AR+AASRYKV E+ AGGGSALVEWRLETGRTHQ
Sbjct: 289 NNRIRMTAIAGSG-HRYARNAASRYKVREVFAGGGSALVEWRLETGRTHQ 337
>gi|357467069|ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatula]
gi|355492867|gb|AES74070.1| RNA pseudourine synthase [Medicago truncatula]
Length = 465
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/241 (67%), Positives = 187/241 (77%), Gaps = 20/241 (8%)
Query: 20 MDKLS-------VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHM 72
+DKLS VS NV+ GD + CTI+ELQ LRA E+IPLDIVYEDD++LV+NKPAHM
Sbjct: 120 VDKLSIVVILEQVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHLLVINKPAHM 179
Query: 73 VVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDE------------EFSS 120
VVHPAPGN +GTLVNGILHHC+LP + S +EA SD ED SDDE S
Sbjct: 180 VVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDTED-SDDELNGFSSQSSSSVGLDS 238
Query: 121 SISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS 180
+S ASIRPGIVHRLDKGTSGLLVVAK+EHSH LSEQFKL TI+RVY+SLT+GVP+ S
Sbjct: 239 RLSMASIRPGIVHRLDKGTSGLLVVAKNEHSHMKLSEQFKLRTIKRVYVSLTAGVPTPVS 298
Query: 181 GRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTH 240
GR+EVP+ RDPNNR+RM A+ G +ARHAASRYKVIEILAGG ALVEW+LETGRTH
Sbjct: 299 GRVEVPVGRDPNNRLRMIAVAGLVNSVKARHAASRYKVIEILAGGSCALVEWKLETGRTH 358
Query: 241 Q 241
Q
Sbjct: 359 Q 359
>gi|218198893|gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
Length = 445
Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 164/230 (71%), Positives = 180/230 (78%), Gaps = 14/230 (6%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSH VKGGD+V+CT+SELQPLRAE EDIPLDIVYEDD++LVVNKPAHMVVHPAPGNA GT
Sbjct: 111 VSHMVKGGDIVSCTVSELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGT 170
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDE-------------EFSSSISGASIRPGI 131
LVN ILHHC + T + + D S D+ E SS + A +RPGI
Sbjct: 171 LVNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGI 230
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
VHRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI RVYISLT G P+ +SGRIEVPI+RDP
Sbjct: 231 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 290
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NNRIRM A PGS H ARHAASRYKV E+ AGGGSALVEWRLETGRTHQ
Sbjct: 291 NNRIRMIATPGSG-HRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQ 339
>gi|115469990|ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 2; AltName:
Full=RNA-uridine isomerase 2; Flags: Precursor
gi|53791796|dbj|BAD53590.1| ribosomal large subunit pseudouridine synthase-like [Oryza sativa
Japonica Group]
gi|54291043|dbj|BAD61720.1| ribosomal large subunit pseudouridine synthase-like [Oryza sativa
Japonica Group]
gi|113596634|dbj|BAF20508.1| Os06g0717400 [Oryza sativa Japonica Group]
gi|215706335|dbj|BAG93191.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636236|gb|EEE66368.1| hypothetical protein OsJ_22675 [Oryza sativa Japonica Group]
Length = 445
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/230 (70%), Positives = 179/230 (77%), Gaps = 14/230 (6%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSH VKGGD+V+CT+ ELQPLRAE EDIPLDIVYEDD++LVVNKPAHMVVHPAPGNA GT
Sbjct: 111 VSHMVKGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGT 170
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDE-------------EFSSSISGASIRPGI 131
LVN ILHHC + T + + D S D+ E SS + A +RPGI
Sbjct: 171 LVNAILHHCKISTFTCLARNSIDDECPDSSDDDIDVFDIDQFTTGEVSSEVREALVRPGI 230
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
VHRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI RVYISLT G P+ +SGRIEVPI+RDP
Sbjct: 231 VHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDP 290
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NNRIRM A PGS H ARHAASRYKV E+ AGGGSALVEWRLETGRTHQ
Sbjct: 291 NNRIRMIATPGSG-HRYARHAASRYKVREVFAGGGSALVEWRLETGRTHQ 339
>gi|357123160|ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like
[Brachypodium distachyon]
Length = 439
Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/229 (69%), Positives = 176/229 (76%), Gaps = 13/229 (5%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VS VKGGD V+CT+SELQPLRAEAEDIPLDIVYED+++LVVNKPAHMVVHPAPGNA GT
Sbjct: 107 VSQTVKGGDTVSCTVSELQPLRAEAEDIPLDIVYEDEHLLVVNKPAHMVVHPAPGNANGT 166
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISD------------DEEFSSSISGASIRPGIV 132
LVN ILHHC + T + + D S + E SS + A +RPGIV
Sbjct: 167 LVNAILHHCKISTFTCLARNSIDDECPESSDDDIDVFDVDQFNGEVSSEVRDAIVRPGIV 226
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
HRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI R+YISLT GVP+ +S RIEVPISRDPN
Sbjct: 227 HRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRIYISLTCGVPNPNSARIEVPISRDPN 286
Query: 193 NRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NRIRM A PGS H ARHAASRYKV E+ GGSALVEW+LETGRTHQ
Sbjct: 287 NRIRMIAAPGSG-HRYARHAASRYKVREVFCSGGSALVEWKLETGRTHQ 334
>gi|356509084|ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Glycine
max]
Length = 450
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 155/232 (66%), Positives = 180/232 (77%), Gaps = 17/232 (7%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VS NVK GD + CTI+ELQ LRA ++IPLDIVYED++VLV+NKPAHMVVHPAPGN +GT
Sbjct: 119 VSFNVKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGT 178
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS---------------IRP 129
LVNGILHHC+LP + S EA SD ED D+EF+S IS AS IRP
Sbjct: 179 LVNGILHHCNLPNVEFSKDEALSDTED--SDDEFNSYISLASSCEGLNSRLSVASNSIRP 236
Query: 130 GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISR 189
GIVHRLDKGTSGLLVVAKDEHSH LSEQFK TI+R+Y+SLT+GVP+ +GR+EVP+ R
Sbjct: 237 GIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGR 296
Query: 190 DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
D NNRIRM A+ G +AR+AASRYKVIEILAGG +LVEW+LETGRTHQ
Sbjct: 297 DTNNRIRMTAVTGPVNSKKARYAASRYKVIEILAGGSCSLVEWKLETGRTHQ 348
>gi|42563248|ref|NP_177732.2| RNA pseudourine synthase 2 [Arabidopsis thaliana]
gi|332197668|gb|AEE35789.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
Length = 313
Score = 298 bits (763), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/195 (77%), Positives = 167/195 (85%), Gaps = 4/195 (2%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSHNVK GD VNCTISELQPL+AEAEDIPLDIVYED +VLVVNKPAHMVVHPAPGN TGT
Sbjct: 119 VSHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGT 178
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAE--DISDDEEFSSSIS--GASIRPGIVHRLDKGTS 140
LVNGILHHCSLP + SN E D++ SDDEE ++S S AS+RPGIVHRLDKGT+
Sbjct: 179 LVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASVRPGIVHRLDKGTT 238
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLLVVAKDEHSHAHL+EQFKLHTIERVY+SLT+GVPS GRIE+PI RD +NRIRMAAI
Sbjct: 239 GLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAI 298
Query: 201 PGSNKHGQARHAASR 215
PG + G+ARHAASR
Sbjct: 299 PGGVRGGRARHAASR 313
>gi|356517956|ref|XP_003527651.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
chloroplastic-like [Glycine max]
Length = 441
Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/235 (62%), Positives = 175/235 (74%), Gaps = 24/235 (10%)
Query: 25 VSHNVKGGDMVNCTIS--ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
VS NVK GD + CTI+ ELQ LRA E+IPLDIVYED++VLV+NKPAHMV+ P N +
Sbjct: 111 VSFNVKSGDEIKCTIAIAELQNLRAVTENIPLDIVYEDEHVLVINKPAHMVI---PNNTS 167
Query: 83 GTLVNGILHHCSLPTLA-SSNQEAFSDAEDISDDEEFSS---------------SISGAS 126
G LVNGILHHC+LP + S +EA SD ED D+EF+S S++ S
Sbjct: 168 GMLVNGILHHCNLPNVEFSKEEEALSDTED--SDDEFNSYRSLASFCEGLNSRLSVASNS 225
Query: 127 IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVP 186
IR GIVHRLDKGTSGL VAKDEHSH LSEQFK HTI+R+Y+SLT+G+P+ +GR+EVP
Sbjct: 226 IRSGIVHRLDKGTSGL-PVAKDEHSHMKLSEQFKQHTIKRIYVSLTAGLPTPVAGRVEVP 284
Query: 187 ISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ RDPNNRIRM A+ G +ARHAASRYKVIEILAGG +LVEW+LETGRTHQ
Sbjct: 285 VGRDPNNRIRMTAVAGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQ 339
>gi|413943104|gb|AFW75753.1| hypothetical protein ZEAMMB73_425131 [Zea mays]
Length = 312
Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/203 (69%), Positives = 156/203 (76%), Gaps = 14/203 (6%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSH VKGGD+V+CT+SELQPLRAEAEDIPLDIVYEDD+VLVVNKPAHMVVHPAPGNA GT
Sbjct: 109 VSHTVKGGDLVSCTVSELQPLRAEAEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNAKGT 168
Query: 85 LVNGILHHCSLPTLA----SSNQEAFSDAEDISDD---------EEFSSSISGASIRPGI 131
LVN ILHHC + T SS + D+ D D E+ SS + A +RPGI
Sbjct: 169 LVNAILHHCKISTFTCLARSSAGDECPDSTDEDTDVFHVDQFAAEDVSSEVRNALVRPGI 228
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
VHRLDKGTSGLLVVAKDEHSHA L+EQFKLHTI RVYISLT G P+ +SGRIE I+RDP
Sbjct: 229 VHRLDKGTSGLLVVAKDEHSHARLAEQFKLHTIRRVYISLTCGAPNPNSGRIEASIARDP 288
Query: 192 NNRIRMAAIPGSNKHGQARHAAS 214
NNRIRM AI GS H AR+AAS
Sbjct: 289 NNRIRMTAIAGSG-HRYARNAAS 310
>gi|18855035|gb|AAL79727.1|AC091774_18 putative ribosomal large subunit pseudouridine synthase [Oryza
sativa Japonica Group]
Length = 275
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 134/191 (70%), Positives = 145/191 (75%), Gaps = 26/191 (13%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
VSH VKGGD+V+CT+ ELQPLRAE EDIPLDIVYEDD++LVVNKPAHMVVHPAPGNA GT
Sbjct: 111 VSHMVKGGDIVSCTVLELQPLRAEPEDIPLDIVYEDDHLLVVNKPAHMVVHPAPGNANGT 170
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN ILHHC + T S +RPGIVHRLDKGTSGLLV
Sbjct: 171 LVNAILHHCKISTFTSL-------------------------VRPGIVHRLDKGTSGLLV 205
Query: 145 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
VAKDEHSHA L+EQFKLHTI RVYISLT G P+ +SGRIEVPI+RDPNNRIRM A PGS
Sbjct: 206 VAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIRMIATPGSG 265
Query: 205 KHGQARHAASR 215
H ARHAASR
Sbjct: 266 -HRYARHAASR 275
>gi|302791942|ref|XP_002977737.1| hypothetical protein SELMODRAFT_107344 [Selaginella moellendorffii]
gi|300154440|gb|EFJ21075.1| hypothetical protein SELMODRAFT_107344 [Selaginella moellendorffii]
Length = 421
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 132/252 (52%), Positives = 150/252 (59%), Gaps = 24/252 (9%)
Query: 14 LALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMV 73
LAL S V GGD V CT+ PL A E I LDIV+EDD+V+VVNK A MV
Sbjct: 74 LALVNGKTITKPSFPVIGGDEVVCTLCGAAPLEATPERIQLDIVHEDDHVIVVNKAADMV 133
Query: 74 VHPAPGNATGTLVNGILHHCSLPTLASS------------NQEAFSDA--EDISDDE--- 116
VHPAPG+ GTLVN ILHHC LP + S E S+ +D DE
Sbjct: 134 VHPAPGHYGGTLVNAILHHCGLPAVEVSLPVMMDEESDDDEGEELSENGDQDYEKDEVEV 193
Query: 117 -----EFSSSISGAS--IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYI 169
E S G IRPGIVHRLDKGTSGL+VVAKDE S LSEQFK + R Y+
Sbjct: 194 HKARGETPSRFRGPRPVIRPGIVHRLDKGTSGLIVVAKDEQSQLSLSEQFKSRKVRRTYL 253
Query: 170 SLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSAL 229
SLT G PS +SGRIE I RDP +R RM AR AASRYKV+++LA GG AL
Sbjct: 254 SLTCGTPSTTSGRIEAEILRDPRDRKRMTTSDTVPSARNARFAASRYKVLDVLANGGVAL 313
Query: 230 VEWRLETGRTHQ 241
V+W+LETGRTHQ
Sbjct: 314 VQWKLETGRTHQ 325
>gi|159487279|ref|XP_001701661.1| RNA pseudouridine synthase [Chlamydomonas reinhardtii]
gi|158280880|gb|EDP06636.1| RNA pseudouridine synthase [Chlamydomonas reinhardtii]
Length = 338
Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 122/246 (49%), Positives = 160/246 (65%), Gaps = 16/246 (6%)
Query: 10 QVSVLALFLSMDKLSVS---HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 66
Q S+ A ++++ VS ++ GD V ++ P++A E IPLDI YED+++LV+
Sbjct: 7 QASIAAGLVAVNGRPVSKAGQQLRAGDTVTASLLPPPPMQAIPEPIPLDIKYEDEHLLVI 66
Query: 67 NKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS 126
NKPA MVVH APG+ TGTLVN +LHHCSLP L + E D E+ + SS + +S
Sbjct: 67 NKPAGMVVHVAPGHHTGTLVNALLHHCSLPALDLAPTEPGGDEEEEESAQLGSSRLLSSS 126
Query: 127 -----------IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGV 175
+RPGIVHR+DKGTSGL+VVAK E + L QFK T++R+Y+S+T G
Sbjct: 127 SASSSSSGSRILRPGIVHRIDKGTSGLIVVAKTETALTRLQAQFKARTVDRLYLSMTVGC 186
Query: 176 PSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLE 235
PS SGR+E ISRDP +R RMAA P G R AAS Y+V+E LAGGG ALV+W+L+
Sbjct: 187 PSSRSGRVETNISRDPGDRKRMAAAPYGGTRG--RTAASSYQVLEPLAGGGCALVQWKLD 244
Query: 236 TGRTHQ 241
TGRTHQ
Sbjct: 245 TGRTHQ 250
>gi|26450633|dbj|BAC42428.1| putative RNA pseudouridylate synthase [Arabidopsis thaliana]
Length = 148
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/148 (73%), Positives = 123/148 (83%), Gaps = 4/148 (2%)
Query: 72 MVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAE--DISDDEEFSSSIS--GASI 127
MVVHPAPGN TGTLVNGILHHCSLP + SN E D++ SDDEE ++S S AS+
Sbjct: 1 MVVHPAPGNPTGTLVNGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSYAASV 60
Query: 128 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 187
RPGIVHRLDKGT+GLLVVAKDEHSHAHL+EQFKLHTIERVY+SLT+GVPS GRIE+PI
Sbjct: 61 RPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPI 120
Query: 188 SRDPNNRIRMAAIPGSNKHGQARHAASR 215
RD +NRIRMAAIPG + G+ARHAASR
Sbjct: 121 GRDSSNRIRMAAIPGGVRGGRARHAASR 148
>gi|308805484|ref|XP_003080054.1| ribosomal large subunit pseudouridine syn (ISS) [Ostreococcus
tauri]
gi|116058513|emb|CAL53702.1| ribosomal large subunit pseudouridine syn (ISS) [Ostreococcus
tauri]
Length = 422
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 147/242 (60%), Gaps = 40/242 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIP-----LDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ VK GD+V EL+ R +E IP LDIVYED++VLVV KPA MV HP+ G+
Sbjct: 107 ARGVKPGDIVE---GELEGER-RSEAIPEPSIELDIVYEDESVLVVCKPAGMVTHPSAGH 162
Query: 81 ATGTLVNGILHHCSLPTL---------------------ASSNQEAFSDAEDISDDEEFS 119
A GTLVN +L HC LP L S E+ SDAE SD ++
Sbjct: 163 ARGTLVNAVLGHCDLPELVVPTGRVSNRMNEDGDFDDDDGPSTSESDSDAESASDSDD-- 220
Query: 120 SSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQS 179
SIRPGIVHRLD+GTSG++VVAKD +H L QF T+ R Y+++ SGVP S
Sbjct: 221 ---DAGSIRPGIVHRLDRGTSGVMVVAKDASAHNSLCNQFASRTVRRRYVAILSGVPKTS 277
Query: 180 SGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRT 239
GRIE P+ RDP +R+RMA PGS R+AAS Y+VI LA G ++LVEWRLETGRT
Sbjct: 278 KGRIEAPVGRDPKDRLRMAVTPGSG-----RYAASNYEVIATLASGNASLVEWRLETGRT 332
Query: 240 HQ 241
HQ
Sbjct: 333 HQ 334
>gi|302846594|ref|XP_002954833.1| RNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
gi|300259808|gb|EFJ44032.1| RNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
Length = 343
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 143/234 (61%), Gaps = 8/234 (3%)
Query: 14 LALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMV 73
L L S +K GD V C + P++A E IPLDI YEDD+V+VVNKP+ MV
Sbjct: 20 LVLVNGQPAAKASQQLKAGDCVVCRLQPPPPMQALPEAIPLDIKYEDDHVIVVNKPSGMV 79
Query: 74 VHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDIS------DDEEFSSSISGASI 127
VH APG+ GTLVN +LHHC+LP L + SS S + +
Sbjct: 80 VHVAPGHHHGTLVNALLHHCALPALDLDSSLDLDPDLGTGIGTSSSSSCSTSSLSSSSCL 139
Query: 128 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 187
RPGIVHRLDKGTSGLLVVAK E + L QFK T++R+Y S+T G P Q +GR+E I
Sbjct: 140 RPGIVHRLDKGTSGLLVVAKTEVALTRLQAQFKARTVDRLYDSITVGCPVQPNGRVETNI 199
Query: 188 SRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RDP +R RMAA P + G+ R A S Y V+ LAGGG+ALV W+L+TGRTHQ
Sbjct: 200 CRDPRDRKRMAAAPYGS--GRGRTAGSNYTVMAPLAGGGAALVRWKLDTGRTHQ 251
>gi|384250930|gb|EIE24408.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 352
Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 141/228 (61%), Gaps = 20/228 (8%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
++ GD+V C + L L A EDIPLD+VYEDD++LV+NK A MV+HPAPGN TGTLV+
Sbjct: 36 LRPGDVVACRLPPLPSLEASPEDIPLDVVYEDDHLLVINKAAGMVIHPAPGNYTGTLVSA 95
Query: 89 ILHHCSLPTLASSNQEAFSD----AEDISDDEE-----------FSSSISGASIRPGIVH 133
+LH LP++ S ++ D AE DEE S SG IRPGIVH
Sbjct: 96 LLHRFGLPSVRLSADDSPGDELEAAESEDGDEERAVPWALPETPMSVGQSGDVIRPGIVH 155
Query: 134 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN 193
RLDKGT+GL+V AKDE + L+ QFK HT++RVY ++ GVP ++ G IE I RD +
Sbjct: 156 RLDKGTTGLMVAAKDERTLTGLAAQFKAHTVQRVYHAIVLGVPKEAEGVIETNIGRDIRD 215
Query: 194 RIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R +M RHA S Y+VIE LAG +A WRL+TGRTHQ
Sbjct: 216 RKKMGVF-----SYMGRHAVSGYRVIEPLAGDSAAYTAWRLQTGRTHQ 258
>gi|145343527|ref|XP_001416372.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576597|gb|ABO94665.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 332
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 139/219 (63%), Gaps = 8/219 (3%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAED-IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
S +K GD++ + + A+ E + LDIV+ED++VLVVNK A MV HP+ G+ +GT
Sbjct: 41 SRALKPGDVIEGELERERASEAKPEPWVKLDIVHEDESVLVVNKAAGMVTHPSAGHESGT 100
Query: 85 LVNGILHHCSLPTLA--SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
LVN +L HC LP L + NQ D ED D + IRPGIVHRLDKGTSG+
Sbjct: 101 LVNAVLGHCDLPELVVPTGNQALSDDDEDDEDAVDEDEGARDGMIRPGIVHRLDKGTSGV 160
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
+VVAKD +H L EQF + R Y+++ SGVPS S GRIE PI RDP +R+RMA
Sbjct: 161 MVVAKDASAHNSLCEQFAARVVRRKYVAILSGVPSPSKGRIEAPIGRDPRDRLRMAVT-- 218
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G R AAS Y+VI LA G ++LVEWRLETGRTHQ
Sbjct: 219 ---QGGGRFAASNYEVIATLANGNASLVEWRLETGRTHQ 254
>gi|412986880|emb|CCO15306.1| pseudouridine synthase, RluA family [Bathycoccus prasinos]
Length = 445
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 145/243 (59%), Gaps = 27/243 (11%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ V+ GD++ TI + L AE EDI LD++YED++V+V+NKPA MVVHPAPG+++
Sbjct: 118 MKKTYKVQRGDVIRLTIERAKSLTAEPEDIKLDVIYEDEDVIVINKPAGMVVHPAPGHSS 177
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSI-------------------S 123
GTLVN +L+HC P L + D ++ +
Sbjct: 178 GTLVNALLYHCGCPALVVQEGRKIPKSLDFAEVQNEEEEDDDDDDDDDDEIMPYLGPEEE 237
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI 183
++RPGIVHRLDKGTSGLLV AK+ +H HL +QF ++ R+Y++L G P+ S+G +
Sbjct: 238 DTTVRPGIVHRLDKGTSGLLVCAKNGAAHQHLCDQFAARSVRRLYVALVLGHPNPSAGVV 297
Query: 184 EVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGR 238
E PI RDP NR+RM +I S + G R A S Y+ +E ++LVEW+L+TGR
Sbjct: 298 EEPIGRDPKNRLRM-SIASSLRTG--RFARSNYRTLETFPTSADTATSASLVEWKLDTGR 354
Query: 239 THQ 241
THQ
Sbjct: 355 THQ 357
>gi|303287646|ref|XP_003063112.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455748|gb|EEH53051.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 417
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 137/216 (63%), Gaps = 18/216 (8%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S V GD++ + P A EDIPLD+ YED++VLVVNKPA MVVHPAPG+++GTL
Sbjct: 130 SERVSPGDVIRVALKPTPPTEAAPEDIPLDVKYEDEHVLVVNKPAGMVVHPAPGHSSGTL 189
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L C P + ++ A + A+ ++ RPGIVHRLDKGTSGL+VV
Sbjct: 190 VNAVLFRCGCPAMRVASGNA-NTADGVA--------------RPGIVHRLDKGTSGLIVV 234
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+E +HA L EQF + R Y+++ G P Q GR++ PI RDP +R++MA +
Sbjct: 235 AKNEAAHASLCEQFATRVVRRRYLAICLGSPEQGEGRVDAPIGRDPRDRLKMAV---VRR 291
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R AAS YKV LA G ++LVEWRLETGRTHQ
Sbjct: 292 SRGGRRAASNYKVRASLARGNASLVEWRLETGRTHQ 327
>gi|153940691|ref|YP_001390824.1| RluA family pseudouridine synthase [Clostridium botulinum F str.
Langeland]
gi|384461876|ref|YP_005674471.1| RluA family pseudouridine synthase [Clostridium botulinum F str.
230613]
gi|152936587|gb|ABS42085.1| pseudouridine synthase, RluA family [Clostridium botulinum F str.
Langeland]
gi|295318893|gb|ADF99270.1| pseudouridine synthase, RluA family [Clostridium botulinum F str.
230613]
Length = 305
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 133/216 (61%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K GD + I E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTL
Sbjct: 52 NYKLKVGDNIEVNIPEPKLLQIEPEDIKLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC +D+S I+G + RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLHHC----------------KDLS-------GINGVA-RPGIVHRIDKDTSGILVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH +L+ QFK H+I RVY++L G+ G IE PI R P +RI+MA +
Sbjct: 148 AKNDISHNNLAAQFKEHSISRVYMALVEGIIKYEQGTIEAPIGRHPVDRIKMAVVK---- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + YKVIE LVE RLETGRTHQ
Sbjct: 204 --DGRHAVTHYKVIERFK--NHTLVECRLETGRTHQ 235
>gi|148379448|ref|YP_001253989.1| pseudouridine synthase [Clostridium botulinum A str. ATCC 3502]
gi|153934249|ref|YP_001383827.1| RluA family pseudouridine synthase [Clostridium botulinum A str.
ATCC 19397]
gi|153935171|ref|YP_001387377.1| RluA family pseudouridine synthase [Clostridium botulinum A str.
Hall]
gi|387817752|ref|YP_005678097.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum H04402 065]
gi|148288932|emb|CAL83019.1| putative ribosomal large subunit pseudouridine synthase
[Clostridium botulinum A str. ATCC 3502]
gi|152930293|gb|ABS35793.1| pseudouridine synthase, RluA family [Clostridium botulinum A str.
ATCC 19397]
gi|152931085|gb|ABS36584.1| pseudouridine synthase, RluA family [Clostridium botulinum A str.
Hall]
gi|322805794|emb|CBZ03359.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum H04402 065]
Length = 305
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 133/216 (61%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K GD + I E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTL
Sbjct: 52 NYKLKVGDNIEVNIPEPKLLQIEPEDIKLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC +D+S I+G + RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLHHC----------------KDLS-------GINGVA-RPGIVHRIDKDTSGILVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH +L+ QFK H+I RVY++L G+ G IE PI R P +RI+MA +
Sbjct: 148 AKNDISHNNLAAQFKEHSISRVYMALVEGIIKDEQGTIEAPIGRHPVDRIKMAVVK---- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + YKVIE LVE RLETGRTHQ
Sbjct: 204 --DGRHAVTHYKVIERFK--NHTLVECRLETGRTHQ 235
>gi|170756442|ref|YP_001781114.1| RluA family pseudouridine synthase [Clostridium botulinum B1 str.
Okra]
gi|429247523|ref|ZP_19210766.1| RluA family pseudouridine synthase [Clostridium botulinum
CFSAN001628]
gi|169121654|gb|ACA45490.1| pseudouridine synthase, RluA family [Clostridium botulinum B1 str.
Okra]
gi|428755477|gb|EKX78105.1| RluA family pseudouridine synthase [Clostridium botulinum
CFSAN001628]
Length = 305
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 129/210 (61%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + I E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTLVN +LH
Sbjct: 58 GDNIEVNIPEPKLLQIEPEDIKLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTLVNALLH 117
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC +D+S I+G + RPGIVHR+DK TSG+LVVAK++ S
Sbjct: 118 HC----------------KDLS-------GINGVA-RPGIVHRIDKDTSGILVVAKNDIS 153
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H +L+ QFK H+I RVY++L G+ G IE PI R P +RI+MA + RH
Sbjct: 154 HNNLAAQFKEHSISRVYMALVEGIIKDEQGTIEAPIGRHPVDRIKMAVV------KDGRH 207
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + YKVIE LVE RLETGRTHQ
Sbjct: 208 AVTHYKVIERFK--NHTLVECRLETGRTHQ 235
>gi|170759197|ref|YP_001786899.1| RluA family pseudouridine synthase [Clostridium botulinum A3 str.
Loch Maree]
gi|169406186|gb|ACA54597.1| pseudouridine synthase, RluA family [Clostridium botulinum A3 str.
Loch Maree]
Length = 305
Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 133/216 (61%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K GD + I E + L+ E ED+ LD++YED +V+VVNKP MVVHPAPG +GTL
Sbjct: 52 NYKLKVGDNIEINIPEPKLLQIEPEDVKLDVIYEDKDVIVVNKPQEMVVHPAPGVYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC +D+S I+G + RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLHHC----------------KDLS-------GINGVA-RPGIVHRIDKDTSGILVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH +L+ QFK H+I RVY++L G+ G IE PI R P +RI+MA +
Sbjct: 148 AKNDISHNNLAAQFKEHSISRVYMALVEGIIKNEQGTIEAPIGRHPVDRIKMAVVK---- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + YKVI+ LVE RLETGRTHQ
Sbjct: 204 --DGRHAVTHYKVIKRFK--NHTLVECRLETGRTHQ 235
>gi|294507190|ref|YP_003571248.1| ribosomal large subunit pseudouridine synthase D [Salinibacter
ruber M8]
gi|294343518|emb|CBH24296.1| Ribosomal large subunit pseudouridine synthase D [Salinibacter
ruber M8]
Length = 379
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 144/223 (64%), Gaps = 18/223 (8%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V+ GD + + P++AE E IPLD+V+EDD++LVVNKPA MVVHPAPG+ +GTL
Sbjct: 76 SYGVEPGDEIVFRLIRKPPMQAEPEAIPLDVVHEDDDLLVVNKPAGMVVHPAPGHRSGTL 135
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDE-------EFSSSISGASIRPGIVHRLDKG 138
V+ +LHH +A+ ++ +++S+DE S +RPGIVHRLDKG
Sbjct: 136 VHALLHHVDGGEVAADDER-----DEVSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKG 190
Query: 139 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 198
TSGLLVVAK +H L+EQFK HT++R Y ++ G + S G IE I RDP++R RMA
Sbjct: 191 TSGLLVVAKRGRAHQPLAEQFKAHTVDRRYRAIVWGHFAPSDGTIEGAIGRDPHHRQRMA 250
Query: 199 AIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+PG + + A + Y+ +E A +++VE+ LETGRTHQ
Sbjct: 251 VVPGD----EGKWARTHYETVETYA--HTSVVEFELETGRTHQ 287
>gi|168180134|ref|ZP_02614798.1| pseudouridine synthase, RluA family [Clostridium botulinum NCTC
2916]
gi|226948812|ref|YP_002803903.1| RluA family pseudouridine synthase [Clostridium botulinum A2 str.
Kyoto]
gi|182669142|gb|EDT81118.1| pseudouridine synthase, RluA family [Clostridium botulinum NCTC
2916]
gi|226841647|gb|ACO84313.1| pseudouridine synthase, RluA family [Clostridium botulinum A2 str.
Kyoto]
Length = 305
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 132/216 (61%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D + I E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTL
Sbjct: 52 NYKLKVRDNIEVNIPEPKLLQIEPEDINLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC +D+S I+G + RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLHHC----------------KDLS-------GINGVA-RPGIVHRIDKDTSGILVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH +L+ QFK H+I RVY++L G+ G IE PI R P +RI+MA +
Sbjct: 148 AKNDISHNNLAAQFKEHSISRVYMALVEGIIKDEQGTIEAPIGRHPVDRIKMAVV----- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + YKVIE LVE RLETGRTHQ
Sbjct: 203 -KDGRHAVTHYKVIERFK--NHTLVECRLETGRTHQ 235
>gi|397905194|ref|ZP_10506065.1| Ribosomal large subunit pseudouridine synthase D [Caloramator
australicus RC3]
gi|397161843|emb|CCJ33399.1| Ribosomal large subunit pseudouridine synthase D [Caloramator
australicus RC3]
Length = 305
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 144/236 (61%), Gaps = 37/236 (15%)
Query: 6 LEFNQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 65
+E N++ V A ++ ++ +K GD + + + L+ +AEDI +DI+YEDD+++V
Sbjct: 38 IEDNKIKVNA-----KEIKSNYKIKNGDEITVEVPKPVMLQIQAEDIDIDILYEDDDIVV 92
Query: 66 VNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGA 125
VNKP MVVHPA GN TGTLVN +L C TL SSI+G
Sbjct: 93 VNKPQGMVVHPAAGNYTGTLVNALLKKCR--TL---------------------SSINGV 129
Query: 126 SIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEV 185
IRPGIVHR+DK TSG+LVVAK++++H HL+EQ K HT++RVYI+LT GV Q G I+
Sbjct: 130 -IRPGIVHRIDKDTSGVLVVAKNDYAHQHLAEQIKEHTVKRVYIALTEGVIKQDQGTIDK 188
Query: 186 PISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
PI R P +R +MA I + A + +KV+E + LVE RLETGRTHQ
Sbjct: 189 PIGRHPIHRKKMAVIEN------GKRAVTHFKVLERYK--ENTLVEARLETGRTHQ 236
>gi|302795552|ref|XP_002979539.1| hypothetical protein SELMODRAFT_36043 [Selaginella moellendorffii]
gi|300152787|gb|EFJ19428.1| hypothetical protein SELMODRAFT_36043 [Selaginella moellendorffii]
Length = 229
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 117/202 (57%), Gaps = 18/202 (8%)
Query: 14 LALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMV 73
LAL S V GGD V CT+ PL A E I LDIV+EDD+V+VVNK A MV
Sbjct: 46 LALVNGKTITKPSFPVIGGDEVVCTLCGAAPLEATPEKIQLDIVHEDDHVIVVNKAADMV 105
Query: 74 VHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 133
VHPAPG+ GTLVN ILHHC LP S F + IRPGIVH
Sbjct: 106 VHPAPGHYGGTLVNAILHHCGLPATPSR----FRGPRPV--------------IRPGIVH 147
Query: 134 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN 193
RLDKGTSGL+VVAKDE S LSEQFK + R Y+SLT G PS +SGRIE I RDP +
Sbjct: 148 RLDKGTSGLIVVAKDEQSQLSLSEQFKSRKVRRTYLSLTCGTPSTTSGRIEAEILRDPRD 207
Query: 194 RIRMAAIPGSNKHGQARHAASR 215
R RM AR AASR
Sbjct: 208 RKRMTTSDTVPSARNARFAASR 229
>gi|295100789|emb|CBK98334.1| ribosomal large subunit pseudouridine synthase D [Faecalibacterium
prausnitzii L2-6]
Length = 310
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 132/219 (60%), Gaps = 27/219 (12%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
++ S +K GD + I + +P+ A +DIPLDIVYEDD++LVVNKP MVVHPAPGN
Sbjct: 49 IAKSLKLKAGDTILLEIPDAKPIEAVPQDIPLDIVYEDDHLLVVNKPKGMVVHPAPGNPD 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L HC + S S G IRPGIVHR+DK TSGL
Sbjct: 109 GTLVNALLWHC-----------------------KGSLSGIGGEIRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAKD+ +H LS+Q +H++ER Y ++ G +Q G +E + R +R +MA P
Sbjct: 146 LVVAKDDATHIGLSQQMAVHSVERAYQTVVYGGFAQDEGFVEANLGRSKTDRKKMAVYPA 205
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
S H ++A + YKV+E GG L+E RL+TGRTHQ
Sbjct: 206 SEPH--TKYAYTGYKVLERF--GGFTLLECRLKTGRTHQ 240
>gi|392382839|ref|YP_005032036.1| pseudouridine synthase [Azospirillum brasilense Sp245]
gi|356877804|emb|CCC98656.1| pseudouridine synthase [Azospirillum brasilense Sp245]
Length = 350
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 128/216 (59%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S VK G + I E +P + EA+DIPLD+VYED++VLV++KPA MVVHPA GN GTL
Sbjct: 78 SMKVKPGQTFDVFIPEAEPAQPEAQDIPLDVVYEDEDVLVIDKPAGMVVHPAAGNPDGTL 137
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + S I G RPGIVHRLDK TSGL+VV
Sbjct: 138 VNALLAHCG----------------------DSLSGIGGVR-RPGIVHRLDKDTSGLMVV 174
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQF T+ R Y +L GVPS GRIE I R +R +MA + G K
Sbjct: 175 AKNDRAHHALTEQFSGRTLSRTYQALVWGVPSPREGRIEGNIGRSSTDRKKMAVVTGGGK 234
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HAA+RY+V+ G ALVE LETGRTHQ
Sbjct: 235 -----HAATRYRVVRSF-GTALALVECTLETGRTHQ 264
>gi|424827321|ref|ZP_18252130.1| RluA family pseudouridine synthase [Clostridium sporogenes PA 3679]
gi|365980244|gb|EHN16280.1| RluA family pseudouridine synthase [Clostridium sporogenes PA 3679]
Length = 305
Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 132/216 (61%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K GD + I E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTL
Sbjct: 52 NYKLKAGDNIEVNIPEPKLLQIEPEDIKLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC +D+S I+G + RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLSHC----------------KDLS-------GINGVA-RPGIVHRIDKDTSGILVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH +L+ QFK H+I RVY++L G+ G IE PI R P +RI+MA +
Sbjct: 148 AKNDISHNNLAAQFKEHSISRVYMALVEGIIKNEQGTIEAPIGRHPVDRIKMAVVK---- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + YKVIE LVE +LETGRTHQ
Sbjct: 204 --DGRYAVTHYKVIERFK--NHTLVECKLETGRTHQ 235
>gi|168182405|ref|ZP_02617069.1| pseudouridine synthase, RluA family [Clostridium botulinum Bf]
gi|237794814|ref|YP_002862366.1| RluA family pseudouridine synthase [Clostridium botulinum Ba4 str.
657]
gi|182674415|gb|EDT86376.1| pseudouridine synthase, RluA family [Clostridium botulinum Bf]
gi|229261378|gb|ACQ52411.1| pseudouridine synthase, RluA family [Clostridium botulinum Ba4 str.
657]
Length = 305
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 128/210 (60%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + I E + L E EDI LDI+YED +V+VVNKP MVVHPAPG +GTLVN +L+
Sbjct: 58 GDNIEVNIPEPKLLEIEPEDIKLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTLVNALLN 117
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC +D+S I+G + RPGIVHR+DK TSG+LVVAK++ S
Sbjct: 118 HC----------------KDLS-------GINGVA-RPGIVHRIDKDTSGILVVAKNDIS 153
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H +L+ QFK H+I RVY++L G+ G IE PI R P +RI+MA + RH
Sbjct: 154 HNNLAAQFKEHSISRVYMALVEGIIKDEQGTIEAPIGRHPVDRIKMAVVK------DGRH 207
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + YKVIE LVE RLETGRTHQ
Sbjct: 208 AVTHYKVIERFK--NHTLVECRLETGRTHQ 235
>gi|187779872|ref|ZP_02996345.1| hypothetical protein CLOSPO_03468 [Clostridium sporogenes ATCC
15579]
gi|187773497|gb|EDU37299.1| pseudouridine synthase, RluA family [Clostridium sporogenes ATCC
15579]
Length = 305
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 132/216 (61%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K GD + I E + L+ E EDI LDI+YED +V+VVNKP MVVHPAPG +GTL
Sbjct: 52 NYKLKVGDNIKVNIPEPKLLQIEPEDIKLDIIYEDKDVIVVNKPQEMVVHPAPGVYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC +D+S I+G + RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLSHC----------------KDLS-------GINGVA-RPGIVHRIDKDTSGILVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH +L+ QFK H+I RVY++L G+ G IE PI R P +RI+MA +
Sbjct: 148 AKNDISHNNLAAQFKEHSISRVYMALVEGIIKDGQGTIEAPIGRHPVDRIKMAVVK---- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + YKVIE LVE +LETGRTHQ
Sbjct: 204 --DGRYAVTHYKVIERFK--NHTLVECKLETGRTHQ 235
>gi|403386611|ref|ZP_10928668.1| RluA family pseudouridine synthase [Clostridium sp. JC122]
Length = 306
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 135/216 (62%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D++N + + + L EAEDI LDIVYED +V++VNK MVVHPAPGN GTL
Sbjct: 52 NYKLKLEDVINIEVPQPRELEIEAEDISLDIVYEDSDVIIVNKAKDMVVHPAPGNYNGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC +D+S I+G + RPGIVHR+DK TSG+LV+
Sbjct: 112 VNALLYHC----------------KDLS-------GINGVA-RPGIVHRIDKDTSGILVI 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++++H L+EQFK H+I R Y +L GV SG I+ PI R P RI+MA + K
Sbjct: 148 AKNDNAHNRLAEQFKDHSITRTYYALVEGVIKTDSGVIDAPIGRHPVERIKMAVV----K 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + Y+VIE G LV+ LETGRTHQ
Sbjct: 204 NG--KHAVTHYEVIERFK--GYTLVKCNLETGRTHQ 235
>gi|83815887|ref|YP_445314.1| ribosomal large subunit pseudouridine synthase D [Salinibacter
ruber DSM 13855]
gi|83757281|gb|ABC45394.1| ribosomal large subunit pseudouridine synthase D [Salinibacter
ruber DSM 13855]
Length = 349
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 142/223 (63%), Gaps = 18/223 (8%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V+ GD + + P++AE E IPLD+V+E D++LVVNKPA MVVHPAPG+ +GTL
Sbjct: 46 SYGVEPGDEIVFRLIRKPPMQAEPEAIPLDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDE-------EFSSSISGASIRPGIVHRLDKG 138
V+ +LHH +A+ ++ +++S+DE S +RPGIVHRLDKG
Sbjct: 106 VHALLHHVDGGEVAADDER-----DEVSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKG 160
Query: 139 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 198
TSGLLVVAK +H L+EQFK HT++R Y ++ G + S G IE I RDP++R RMA
Sbjct: 161 TSGLLVVAKRGRAHQPLAEQFKAHTVDRRYRAIVWGRFAPSDGTIEGAIGRDPHHRQRMA 220
Query: 199 AIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+P + + A + Y+ +E A +++VE+ LETGRTHQ
Sbjct: 221 VVPED----EGKWARTHYETVETHA--HTSVVEFELETGRTHQ 257
>gi|224083169|ref|XP_002306957.1| predicted protein [Populus trichocarpa]
gi|222856406|gb|EEE93953.1| predicted protein [Populus trichocarpa]
Length = 192
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/125 (74%), Positives = 101/125 (80%), Gaps = 6/125 (4%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
SHNVK GD ++C I E +PLR E E++PLDIVYED+NVLVVNKPA MVVHPAPGNATGTL
Sbjct: 63 SHNVKAGDEMDCIILEWKPLRVEPENLPLDIVYEDENVLVVNKPAQMVVHPAPGNATGTL 122
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDD---EEFSSSISGASIRPGIVHRLDKGTSGL 142
VNGILHH S PT+ SNQE SDAEDISDD E SS AS+RPGIVH LDKGTSGL
Sbjct: 123 VNGILHHSS-PTV--SNQEVLSDAEDISDDGDGEGLCSSSYVASVRPGIVHWLDKGTSGL 179
Query: 143 LVVAK 147
LVVAK
Sbjct: 180 LVVAK 184
>gi|268611664|ref|ZP_06145391.1| RluA family pseudouridine synthase [Ruminococcus flavefaciens FD-1]
Length = 304
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 134/226 (59%), Gaps = 30/226 (13%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ +S +S ++ ++ GD V I E +P+ A EDIPLDIVYED ++LVVNKP MVVH
Sbjct: 43 ILVSGKSVSKNYKLRDGDTVEVEIPEPEPMDALPEDIPLDIVYEDSDLLVVNKPKGMVVH 102
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA GN +GTLVN +LHHC + S I+G IRPGIVHR+
Sbjct: 103 PAHGNHSGTLVNALLHHCG----------------------DSLSGINGV-IRPGIVHRI 139
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK++ +H HL+EQ K+H+ R Y ++ SG ++ G I+ PI R +R
Sbjct: 140 DKNTSGLLIVAKNDAAHLHLAEQIKVHSFTREYEAVASGYFKETEGTIDAPIGRHKTDRK 199
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+M + +R+A + Y VI GG A V RLETGRTHQ
Sbjct: 200 KMCVTTEN-----SRNAVTHYSVIRQY--GGYAHVRLRLETGRTHQ 238
>gi|451948094|ref|YP_007468689.1| ribosomal large subunit pseudouridine synthase D [Desulfocapsa
sulfexigens DSM 10523]
gi|451907442|gb|AGF79036.1| ribosomal large subunit pseudouridine synthase D [Desulfocapsa
sulfexigens DSM 10523]
Length = 329
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 142/235 (60%), Gaps = 30/235 (12%)
Query: 8 FNQVSVLALFLSMDK-LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 66
NQ L L L K S+ +K G+ ++ ++ E +PL ++IP D++YEDD++L+V
Sbjct: 47 LNQAIRLGLLLVDGKNKKSSYKLKVGEQISGSLFEAEPLTLAPQNIPFDLLYEDDSLLIV 106
Query: 67 NKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS 126
+KP +VVHPA GN GTLVNG+L+HC ++I+D G +
Sbjct: 107 SKPPGIVVHPAVGNPDGTLVNGLLYHC----------------QEIAD--------VGDT 142
Query: 127 IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVP 186
IRPGIVHRLDK TSG++VVAK H L E FK T+E+ Y++L GV SQ SGRI P
Sbjct: 143 IRPGIVHRLDKDTSGIMVVAKTAQCHRLLGEAFKERTVEKKYLALVFGVLSQRSGRIVAP 202
Query: 187 ISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
I+R P R +MA + G+ R+AAS ++V+E + G S LV+ +ETGRTHQ
Sbjct: 203 IARHPLQRQKMAVC----EEGRGRYAASSWRVLEEYSEGCS-LVQVLIETGRTHQ 252
>gi|118581597|ref|YP_902847.1| RluA family pseudouridine synthase [Pelobacter propionicus DSM
2379]
gi|118504307|gb|ABL00790.1| ribosomal large subunit pseudouridine synthase D [Pelobacter
propionicus DSM 2379]
Length = 315
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 132/216 (61%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +KGG+ ++ + E R E IPL+++YED +++V+NKPA MVVHP PGN++GTL
Sbjct: 49 SLKLKGGESISIQLPEPVAARPLPESIPLEVLYEDGDLIVINKPAGMVVHPGPGNSSGTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC+ D+S G +RPGIVHRLDKGTSG++VV
Sbjct: 109 VNALLAHCT----------------DLSG--------IGGELRPGIVHRLDKGTSGVMVV 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH LS QF +H+I+R+Y +L G P Q SGR+E I R P +R+R + +
Sbjct: 145 AKNDRSHQALSAQFSVHSIKRIYQALVYGSPQQDSGRLEGQIGRHPTDRLRRSGL----- 199
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
Q +HA +R++V G L+E RLETGRTHQ
Sbjct: 200 ARQGKHAVTRWRVRGRY--GRICLMELRLETGRTHQ 233
>gi|295105659|emb|CBL03203.1| ribosomal large subunit pseudouridine synthase D [Faecalibacterium
prausnitzii SL3/3]
Length = 310
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 129/216 (59%), Gaps = 27/216 (12%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD V I + +P+ A +DIPL+IVYED ++LVVNKP MVVHPAPGN GTL
Sbjct: 52 SLKLKAGDTVLLEIPDAKPIEAVPQDIPLEIVYEDSHLLVVNKPKGMVVHPAPGNQDGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + S S G IRPGIVHR+DK TSGLLVV
Sbjct: 112 VNALLWHC-----------------------KGSLSGIGGEIRPGIVHRIDKDTSGLLVV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AKD+ +H LS+Q +H++ER Y ++ G +Q G +E + R +R +MA P +
Sbjct: 149 AKDDATHIGLSQQMAVHSVERAYQTVVYGGFAQDEGFVEANLGRSKTDRKKMAVYPANEP 208
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H ++A + YKV+E L G L+E RL+TGRTHQ
Sbjct: 209 H--TKYAYTGYKVLERL--GEFTLLECRLKTGRTHQ 240
>gi|374582996|ref|ZP_09656090.1| pseudouridine synthase, RluA family [Desulfosporosinus youngiae DSM
17734]
gi|374419078|gb|EHQ91513.1| pseudouridine synthase, RluA family [Desulfosporosinus youngiae DSM
17734]
Length = 338
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 132/216 (61%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GDM+ I + AE E+IPL+I+YED++VLVVNKP MVVHPAPG TGT+
Sbjct: 86 NYKVRQGDMIEVMIPAPREAAAEPENIPLEILYEDEDVLVVNKPQGMVVHPAPGAWTGTM 145
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC + S I+G +RPGIVHR+DK TSG+LVV
Sbjct: 146 VNALLYHC-----------------------KNLSGINGV-LRPGIVHRIDKDTSGILVV 181
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K HT+ER Y++L GV S+ SG + PI RDP++R RMA +
Sbjct: 182 AKNDSAHQGLAAQLKAHTMERKYLTLVQGVMSEPSGTVSAPIGRDPSDRKRMAVV----- 236
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ A + Y V+E + +E RLETGRTHQ
Sbjct: 237 MLHSKPAVTYYTVLERFK--ETTYLEVRLETGRTHQ 270
>gi|427708515|ref|YP_007050892.1| ribosomal large subunit pseudouridine synthase D [Nostoc sp. PCC
7107]
gi|427361020|gb|AFY43742.1| ribosomal large subunit pseudouridine synthase D [Nostoc sp. PCC
7107]
Length = 312
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 125/215 (58%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
NVK GD + I E QPL +AEDIPLDI+YEDD +L++NKPA +VVHPAPG+ GTLVN
Sbjct: 54 NVKAGDRITLQIPEAQPLELQAEDIPLDILYEDDQLLILNKPAGLVVHPAPGHYDGTLVN 113
Query: 88 GILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+L HC +LP + G RPGIVHRLDK T+G + +
Sbjct: 114 ALLAHCPNLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIV 148
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + ++ HL Q + T +R Y+ + G P SG+I+ PI R P +R +MA +P
Sbjct: 149 KTDIAYQHLQAQLQAKTAQREYLGVVYGAPKTQSGKIDFPIGRHPQDRKKMAVVPVEEG- 207
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+E L G L+ ++LETGRTHQ
Sbjct: 208 --GRAAVTHWQVLERL--GNYTLIHFQLETGRTHQ 238
>gi|330814384|ref|YP_004358623.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Pelagibacter sp. IMCC9063]
gi|327487479|gb|AEA81884.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Pelagibacter sp. IMCC9063]
Length = 327
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 130/219 (59%), Gaps = 31/219 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S V GD V ++ E P + ++IPLD+VYEDD++LV+NKP MVVHP GN GTL
Sbjct: 55 SKKVSFGDEVELSVPEPVPTDLKPQNIPLDVVYEDDDLLVINKPIGMVVHPGAGNPDGTL 114
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC +E S I+G +RPGIVHR+DK TSGLLVV
Sbjct: 115 VNALLHHC----------------------KENLSGING-ELRPGIVHRIDKDTSGLLVV 151
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L++QF+ H+I+R Y++ G+P GRIE I R NR +M+A GS K
Sbjct: 152 AKNDIAHNVLAKQFEDHSIQRTYLAFVWGMPKPIHGRIETLIGRSKYNRQKMSAEVGSGK 211
Query: 206 HGQARHAASRYKVIEILAGG---GSALVEWRLETGRTHQ 241
A + YK +E+ G +L+E RLETGRTHQ
Sbjct: 212 -----DAITNYKTLEVFKGKTIPDISLIECRLETGRTHQ 245
>gi|440781918|ref|ZP_20960146.1| RluA family pseudouridine synthase [Clostridium pasteurianum DSM
525]
gi|440220636|gb|ELP59843.1| RluA family pseudouridine synthase [Clostridium pasteurianum DSM
525]
Length = 306
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 135/222 (60%), Gaps = 33/222 (14%)
Query: 21 DKLSVS-HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
DKL S + +K D V I E + L EAEDI + I+YED +V+V++KP MVVHPAPG
Sbjct: 47 DKLKKSNYKLKLNDEVYVNIPENKELNVEAEDIKIHILYEDGDVIVIDKPQGMVVHPAPG 106
Query: 80 NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 139
N TGTLVN +L+HC +D+S I+G + RPGIVHR+DK T
Sbjct: 107 NYTGTLVNALLYHC----------------KDLS-------GINGVN-RPGIVHRIDKDT 142
Query: 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAA 199
SG+LVVAK++ +H L+EQ K HT+ RVY++L G+ G+++VP+ R P RI+++
Sbjct: 143 SGILVVAKNDKAHKFLAEQLKEHTMTRVYLALVEGIIKVDEGKVDVPLGRHPVERIKISV 202
Query: 200 IPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
I R+A + Y V+E + L+E RLETGRTHQ
Sbjct: 203 IK------DGRNAVTHYNVMERFK--NNTLIECRLETGRTHQ 236
>gi|186683943|ref|YP_001867139.1| RluA family pseudouridine synthase [Nostoc punctiforme PCC 73102]
gi|186466395|gb|ACC82196.1| pseudouridine synthase, RluA family [Nostoc punctiforme PCC 73102]
Length = 345
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 128/224 (57%), Gaps = 33/224 (14%)
Query: 21 DKLSVSH--NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAP 78
DK+ S NVK GD + I E QPL AEDIPLDI+YEDD +L++NKPA +VVHPAP
Sbjct: 80 DKVCTSKKINVKLGDRITLEIPEAQPLELLAEDIPLDILYEDDQLLILNKPAGLVVHPAP 139
Query: 79 GNATGTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDK 137
G+ GTLVN +L HC +LP + G RPGIVHRLDK
Sbjct: 140 GHPDGTLVNALLAHCPNLPGI-------------------------GGVQRPGIVHRLDK 174
Query: 138 GTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRM 197
T+G + +AK E +H HL Q K T R Y+ + G P SG I++PI R P +R +M
Sbjct: 175 DTTGAIAIAKTEVAHHHLQAQLKAKTARREYLGVVYGAPKVESGTIDLPIGRHPQDRKKM 234
Query: 198 AAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A +P R A + ++V+E L G L+ ++LETGRTHQ
Sbjct: 235 AIMPIEQG---GRSAVTHWQVLERL--GNFTLIRFQLETGRTHQ 273
>gi|160945091|ref|ZP_02092317.1| hypothetical protein FAEPRAM212_02610 [Faecalibacterium prausnitzii
M21/2]
gi|158442822|gb|EDP19827.1| pseudouridine synthase, RluA family [Faecalibacterium prausnitzii
M21/2]
Length = 310
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 129/216 (59%), Gaps = 27/216 (12%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD V I + +P+ A +DIPL+IVYED ++LVVNKP MVVHPAPGN GTL
Sbjct: 52 SLKLKAGDTVLLEIPDAKPIEAVPQDIPLEIVYEDAHLLVVNKPKGMVVHPAPGNPDGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + S S G IRPGIVHR+DK TSGLLVV
Sbjct: 112 VNALLWHC-----------------------KGSLSGIGGEIRPGIVHRIDKDTSGLLVV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AKD+ +H LS+Q +H++ER Y ++ G +Q G +E + R +R +MA P +
Sbjct: 149 AKDDATHIGLSQQMAVHSVERAYQTVVYGGFAQDEGFVEANLGRSKIDRKKMAVYPATEP 208
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H ++A + YKV+E L G L+E RL+TGRTHQ
Sbjct: 209 H--TKYAYTGYKVLERL--GEFTLLECRLKTGRTHQ 240
>gi|392426940|ref|YP_006467934.1| ribosomal large subunit pseudouridine synthase D [Desulfosporosinus
acidiphilus SJ4]
gi|391356903|gb|AFM42602.1| ribosomal large subunit pseudouridine synthase D [Desulfosporosinus
acidiphilus SJ4]
Length = 324
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 130/216 (60%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD + TI +P AE E+IPLDI+YEDD+VLVVNKP MVVHPAPG TGTL
Sbjct: 72 NYKIRKGDRIEATIPIPRPAAAEPENIPLDILYEDDDVLVVNKPQGMVVHPAPGAWTGTL 131
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC S I+G +RPGIVHR+DK TSG+LVV
Sbjct: 132 VNALLFHC-----------------------RNLSGINGV-LRPGIVHRIDKDTSGILVV 167
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K H++ER Y+++ GV + SG + PI RDP++R RMA +
Sbjct: 168 AKNDEAHQSLAAQLKEHSMERFYLAVAHGVIHEPSGTVNAPIGRDPSDRKRMAVV----- 222
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ A + YKV+E + +E LETGRTHQ
Sbjct: 223 MHHSKTAVTHYKVLERYK--DATYLEVHLETGRTHQ 256
>gi|255070545|ref|XP_002507354.1| predicted protein [Micromonas sp. RCC299]
gi|226522629|gb|ACO68612.1| predicted protein [Micromonas sp. RCC299]
Length = 357
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 132/217 (60%), Gaps = 22/217 (10%)
Query: 26 SHNVKGGDMVNC-TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
SH + GD V C I P E+IPLD+V+EDD+++VVNKP MVVHP+ G+A G+
Sbjct: 74 SHKLDIGDRVICGEIVASPPTEVAPENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGS 133
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +L HC+ SN+ DA + D R G+VHR+DKGTSGLLV
Sbjct: 134 LVNALLFHCN----ERSNRG--DDASKMIDVP-----------RLGVVHRIDKGTSGLLV 176
Query: 145 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+AKD + A L QF ++ R Y+++ G P++ SGRI+ PI RDP +R++MA + G+
Sbjct: 177 MAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPARESGRIDAPIGRDPADRLKMAIVRGAT 236
Query: 205 KHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A S + V L G ++LVEW+LETGRTHQ
Sbjct: 237 ----GRQAISNFGVRARLVRGNASLVEWQLETGRTHQ 269
>gi|392394868|ref|YP_006431470.1| ribosomal large subunit pseudouridine synthase D
[Desulfitobacterium dehalogenans ATCC 51507]
gi|390525946|gb|AFM01677.1| ribosomal large subunit pseudouridine synthase D
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 344
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 130/216 (60%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + + + L+ EAEDIPL+I+YED++VLVVNKP MVVHPAPG T TL
Sbjct: 88 NYKVRTKDKITVVLPPPKELQVEAEDIPLEILYEDEDVLVVNKPQGMVVHPAPGAWTKTL 147
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC S I+G +RPGIVHR+DK TSGLLVV
Sbjct: 148 VNALLYHC-----------------------RNLSGINGV-LRPGIVHRIDKDTSGLLVV 183
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ K H++ R Y+++ GV + SG +E PI RDP +R +MA +
Sbjct: 184 AKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVEAPIGRDPADRKKMAVV----- 238
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A+ A + YKV+E L+E RLETGRTHQ
Sbjct: 239 FQNAKEAVTHYKVLERFR--DFTLIEARLETGRTHQ 272
>gi|402574180|ref|YP_006623523.1| ribosomal large subunit pseudouridine synthase D [Desulfosporosinus
meridiei DSM 13257]
gi|402255377|gb|AFQ45652.1| ribosomal large subunit pseudouridine synthase D [Desulfosporosinus
meridiei DSM 13257]
Length = 323
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 135/216 (62%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD+V TI + A E+IPL+I+Y+D++VLVVNKP MVVHPAPG TGT+
Sbjct: 73 NYKIRQGDLVKVTIPAPRESSATPENIPLEIIYQDEDVLVVNKPQGMVVHPAPGAWTGTM 132
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC + S I+G +RPGIVHR+DK TSG+LVV
Sbjct: 133 VNALLYHC-----------------------DNLSGINGV-LRPGIVHRIDKDTSGILVV 168
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH L+ Q K H++ER Y++L GV ++ SG ++ PI RDP++R RMA + ++K
Sbjct: 169 AKNDFSHQGLAAQLKAHSMERKYLALVHGVMTEPSGTVDAPIGRDPSDRKRMAVVMQNSK 228
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y V+E G ++ +E LETGRTHQ
Sbjct: 229 -----QAVTHYTVVERF--GDTSYLEVCLETGRTHQ 257
>gi|257439832|ref|ZP_05615587.1| ribosomal large subunit pseudouridine synthase D [Faecalibacterium
prausnitzii A2-165]
gi|257197741|gb|EEU96025.1| pseudouridine synthase, RluA family [Faecalibacterium prausnitzii
A2-165]
Length = 314
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 130/216 (60%), Gaps = 27/216 (12%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD++ I + +P+ A ++IPLDI+YED ++LVVNKP MVVHPAPGN GTL
Sbjct: 52 SLKLKAGDIILLEIPDAKPIEAVPQEIPLDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + S S G IRPGIVHR+DK TSGLLVV
Sbjct: 112 VNALLWHC-----------------------KGSLSGIGGEIRPGIVHRVDKDTSGLLVV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AKD+ +H LS+Q +H++ER Y ++ G +Q G +E + R +R +MA P S
Sbjct: 149 AKDDATHIGLSQQMAVHSVERAYNTIVYGGFAQDEGFVESNLGRSKTDRKKMAVYPASEP 208
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H ++A + YKV+E L G ++E RL+TGRTHQ
Sbjct: 209 H--TKYAYTGYKVLERL--GEFTMLECRLKTGRTHQ 240
>gi|15895383|ref|NP_348732.1| pseudouridylate synthase [Clostridium acetobutylicum ATCC 824]
gi|337737331|ref|YP_004636778.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
gi|384458840|ref|YP_005671260.1| pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|15025103|gb|AAK80072.1|AE007712_8 Predicted pseudouridylate synthase, YLYB B.subtilis ortholog
[Clostridium acetobutylicum ATCC 824]
gi|325509529|gb|ADZ21165.1| pseudouridylate synthase [Clostridium acetobutylicum EA 2018]
gi|336291055|gb|AEI32189.1| pseudouridylate synthase [Clostridium acetobutylicum DSM 1731]
Length = 305
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 139/226 (61%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + ++ +K D V I + + L+ EAE+IPLDIVYED +++VVNK MVVH
Sbjct: 42 VFVNGKAVKSNYKLKSRDNVEFEIPDNEELKIEAENIPLDIVYEDRDIVVVNKAQGMVVH 101
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPGN GTLVN +L+HC +D+ S I+G +RPGIVHR+
Sbjct: 102 PAPGNYNGTLVNALLYHC----------------KDL-------SGINGV-LRPGIVHRI 137
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSG+LVVAK++ +H +L+ Q K H++ RVY ++ G+ + G ++ P++R P R+
Sbjct: 138 DKDTSGILVVAKNDAAHKNLANQLKEHSMNRVYRAVVEGIIKEDEGTVDKPLARHPVERV 197
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + G R+A + YKV+E S L+E +LETGRTHQ
Sbjct: 198 KIAVVKG------GRNAVTHYKVLERYR--NSTLIECKLETGRTHQ 235
>gi|199598373|ref|ZP_03211792.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus rhamnosus
HN001]
gi|258508458|ref|YP_003171209.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus GG]
gi|385828126|ref|YP_005865898.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
gi|199590692|gb|EDY98779.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus rhamnosus
HN001]
gi|257148385|emb|CAR87358.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus GG]
gi|259649771|dbj|BAI41933.1| pseudouridylate synthase [Lactobacillus rhamnosus GG]
Length = 306
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 127/221 (57%), Gaps = 33/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + + V GD+V TI E++PL+A AE IPL+IVYEDD V+VVNKP MVVHPAPG+
Sbjct: 44 NPVKANFKVTAGDVVTVTIPEVKPLKAVAEPIPLEIVYEDDQVIVVNKPQGMVVHPAPGH 103
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVNG+L+H LP I+G IRPGIVHR+DK TS
Sbjct: 104 PDGTLVNGLLYHTKLP------------------------GINGV-IRPGIVHRIDKDTS 138
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 139 GLLMVAKTEAAQLSLSAQLKAKTSIREYLALVHGTFKEDEGTIDAPLGRDPRDRKRQAVV 198
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E LV+ L+TGRTHQ
Sbjct: 199 ------ADGRHAVTHFQVLERFT--NYTLVKCILDTGRTHQ 231
>gi|229552260|ref|ZP_04440985.1| pseudouridylate synthase [Lactobacillus rhamnosus LMS2-1]
gi|258539670|ref|YP_003174169.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus Lc 705]
gi|385835319|ref|YP_005873093.1| RluA family pseudouridine synthase [Lactobacillus rhamnosus ATCC
8530]
gi|418070676|ref|ZP_12707951.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus R0011]
gi|421770413|ref|ZP_16207110.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP2]
gi|421773631|ref|ZP_16210272.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP3]
gi|423077996|ref|ZP_17066683.1| pseudouridine synthase, RluA family [Lactobacillus rhamnosus ATCC
21052]
gi|229314396|gb|EEN80369.1| pseudouridylate synthase [Lactobacillus rhamnosus LMS2-1]
gi|257151346|emb|CAR90318.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus Lc 705]
gi|355394810|gb|AER64240.1| pseudouridine synthase, RluA family protein [Lactobacillus
rhamnosus ATCC 8530]
gi|357540096|gb|EHJ24113.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus R0011]
gi|357552376|gb|EHJ34149.1| pseudouridine synthase, RluA family [Lactobacillus rhamnosus ATCC
21052]
gi|411181631|gb|EKS48798.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP3]
gi|411182285|gb|EKS49437.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus LRHMDP2]
Length = 306
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 127/221 (57%), Gaps = 33/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + + V GD+V TI E++PL+A AE IPL+IVYEDD V+VVNKP MVVHPAPG+
Sbjct: 44 NPVKANFKVTAGDVVTVTIPEVKPLKAVAEPIPLEIVYEDDQVIVVNKPQGMVVHPAPGH 103
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVNG+L+H LP I+G IRPGIVHR+DK TS
Sbjct: 104 PDGTLVNGLLYHTKLP------------------------GINGV-IRPGIVHRIDKDTS 138
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 139 GLLMVAKTEAAQLSLSAQLKAKTSIREYLALVHGTFKEDEGTIDAPLGRDPRDRKRQAVV 198
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E LV+ L+TGRTHQ
Sbjct: 199 ------ADGRHAVTHFQVLERFT--NYTLVKCILDTGRTHQ 231
>gi|23015589|ref|ZP_00055361.1| COG0564: Pseudouridylate synthases, 23S RNA-specific
[Magnetospirillum magnetotacticum MS-1]
Length = 327
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 134/242 (55%), Gaps = 35/242 (14%)
Query: 7 EFNQVSVLALF----LSMDKLSVSH---NVKGGDMVNCTISELQPLRAEAEDIPLDIVYE 59
E ++ + AL +S+D ++S VK G + P EA+DI L +VYE
Sbjct: 33 ELSRTRIKALIEDGRVSLDATTISDASLRVKPGQCFTVEVPPDAPAEPEAQDIALSVVYE 92
Query: 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFS 119
D++++V++KPA MVVHPAPGN TLVN +L HC E
Sbjct: 93 DEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCG----------------------ESL 130
Query: 120 SSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQS 179
+ I G RPGIVHR+DK TSGLLV AK + +H L+ QF H++ER Y +L G PS
Sbjct: 131 AGIGGVK-RPGIVHRIDKDTSGLLVAAKTDAAHRGLAAQFAEHSLERAYWALVWGTPSPR 189
Query: 180 SGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRT 239
G IE I R+PN+R +MA + K A +RY+V++ AGG +LVE RL TGRT
Sbjct: 190 QGEIEGNIGRNPNDRKKMAVVKSGGK-----PALTRYRVLKSFAGGAVSLVECRLATGRT 244
Query: 240 HQ 241
HQ
Sbjct: 245 HQ 246
>gi|417081029|ref|ZP_11950621.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus MTCC 5462]
gi|328461874|gb|EGF34095.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
rhamnosus MTCC 5462]
Length = 260
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 126/219 (57%), Gaps = 33/219 (15%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ + V GD+V TI E++PL+A AE IPL+IVYEDD V+VVNKP MVVHPAPG+
Sbjct: 9 VKANFKVTAGDVVTVTIPEVKPLKAVAEPIPLEIVYEDDQVIVVNKPQGMVVHPAPGHPD 68
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG+L+H LP I+G IRPGIVHR+DK TSGL
Sbjct: 69 GTLVNGLLYHTKLP------------------------GINGV-IRPGIVHRIDKDTSGL 103
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 104 LMVAKTETAQLSLSAQLKAKTSIREYLALVHGTFKEDEGTIDAPLGRDPRDRKRQAVV-- 161
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E LV+ L+TGRTHQ
Sbjct: 162 ----ADGRHAVTHFQVLERFT--NYTLVKCILDTGRTHQ 194
>gi|313114073|ref|ZP_07799625.1| pseudouridine synthase, RluA family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623482|gb|EFQ06885.1| pseudouridine synthase, RluA family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 310
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 129/216 (59%), Gaps = 27/216 (12%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD + I + +P+ A +DIPL+IVYED+++LVVNKP MVVHPAPGN GTL
Sbjct: 52 SLKLKAGDTIVLEIPDAKPIEAVPQDIPLEIVYEDEHLLVVNKPKGMVVHPAPGNPDGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + S S G IRPGIVHR+DK TSGLLVV
Sbjct: 112 VNALLWHC-----------------------KGSLSGIGGEIRPGIVHRIDKDTSGLLVV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AKD+ +H LS+Q +H++ER Y ++ G +Q G +E + R +R +MA P S
Sbjct: 149 AKDDATHIGLSQQMAVHSVERAYRTIVYGGFAQDEGFVESNLGRSKTDRKKMAVYPASEP 208
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H ++A + Y+V+E L ++E RL+TGRTHQ
Sbjct: 209 H--TKYAYTGYQVLERL--NNFTMLECRLKTGRTHQ 240
>gi|117925422|ref|YP_866039.1| ribosomal large subunit pseudouridine synthase D [Magnetococcus
marinus MC-1]
gi|117609178|gb|ABK44633.1| ribosomal large subunit pseudouridine synthase D [Magnetococcus
marinus MC-1]
Length = 332
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 129/216 (59%), Gaps = 24/216 (11%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S V+ G + SE +P A E+I L+I++ED++++V+NKPA MVVHP G GTL
Sbjct: 59 SQKVRVGQHIIIYPSEPEPSTALPEEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTL 118
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC P D+ S G IRPGIVHRLDK TSG++V
Sbjct: 119 VNALLYHCGTP-----------------DNPHGGLSGIGGVIRPGIVHRLDKETSGIMVA 161
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK +H+H HLS QF+ TI R Y++LT G+P + GRIE I R P +R +MA +
Sbjct: 162 AKQDHAHIHLSRQFEQRTIGRRYLALTRGIPQPAQGRIEGAIGRHPIHRTKMAVVEQGG- 220
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R AA+RYKV+E L G AL+ RLE+GRTHQ
Sbjct: 221 ----RAAATRYKVLEPL--GQFALIRCRLESGRTHQ 250
>gi|398382781|ref|ZP_10540862.1| pseudouridine synthase, RluA family [Sphingobium sp. AP49]
gi|397726181|gb|EJK86622.1| pseudouridine synthase, RluA family [Sphingobium sp. AP49]
Length = 298
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 133/219 (60%), Gaps = 29/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L+ S V G + T+ L A A+DIPLDIV+ED +++VV+KPA +VVHPA GN
Sbjct: 35 LNPSMKVAAGQDFSITLPAPVALDAVAQDIPLDIVHEDADLIVVDKPAGLVVHPAAGNLD 94
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +LHHC D + S G RPGIVHR+DK TSGL
Sbjct: 95 GTLVNALLHHC---------------------DGQLSGI--GGVARPGIVHRIDKDTSGL 131
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK + +H L+ QFK H+I+R+Y ++ G+P+ SG ++ I R +R +MA
Sbjct: 132 LVVAKSDKAHEGLARQFKDHSIDRLYAAIVYGIPTPGSGTVDAWIGRSDADRKKMAV--- 188
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ G+ +HA + Y+V+E L G+A+VE RLETGRTHQ
Sbjct: 189 -HREGRGKHAVTHYRVMERLR--GAAMVECRLETGRTHQ 224
>gi|366085944|ref|ZP_09452429.1| 23S RNA-specific pseudouridylate synthase [Lactobacillus zeae KCTC
3804]
Length = 306
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 126/219 (57%), Gaps = 33/219 (15%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ V GD++ +I E +PL A AE IPLDIVYEDD V+VVNKP MVVHPAPG+
Sbjct: 46 VKANYKVSLGDVIAVSIPEARPLEAVAEPIPLDIVYEDDQVIVVNKPQGMVVHPAPGHPD 105
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG+L+H LP I+G IRPGIVHR+DK TSGL
Sbjct: 106 GTLVNGLLYHTDLP------------------------GINGV-IRPGIVHRIDKDTSGL 140
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 141 LMVAKTEKAQLSLSAQLKAKTSIREYLALVHGTFKEDEGTIDAPLGRDPRDRKRQAVV-- 198
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E A L++ LETGRTHQ
Sbjct: 199 ----ADGRHAVTHFQVLERFA--HYTLIKCVLETGRTHQ 231
>gi|374997203|ref|YP_004972702.1| RluA family pseudouridine synthase [Desulfosporosinus orientis DSM
765]
gi|357215569|gb|AET70187.1| pseudouridine synthase, RluA family [Desulfosporosinus orientis DSM
765]
Length = 339
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 131/216 (60%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD + + Q L+AE E+IPL+I+YED++VLVVNKP MVVHPAPG GTL
Sbjct: 82 NYKVRFGDKITVMVPPPQELQAEPENIPLEILYEDEDVLVVNKPQGMVVHPAPGAWQGTL 141
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC S I+G +RPGIVHR+DK TSG+LVV
Sbjct: 142 VNALLFHC-----------------------HNLSGINGV-LRPGIVHRIDKDTSGILVV 177
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K H++ER Y+++ GV + SG ++ PI RDP R RMA +
Sbjct: 178 AKNDTAHQGLAAQLKAHSMERRYLTIVHGVIHEPSGTVDAPIGRDPAERKRMAVV----- 232
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++HA + Y V++ L+ + +E RLETGRTHQ
Sbjct: 233 RQHSKHAVTHYTVLKRLS--ETTFLEVRLETGRTHQ 266
>gi|218438495|ref|YP_002376824.1| pseudouridine synthase [Cyanothece sp. PCC 7424]
gi|218171223|gb|ACK69956.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7424]
Length = 306
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 127/213 (59%), Gaps = 29/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK GD ++ I ++PL + +DIPLDI+YEDD ++++NKPA +VVHP+PG+ GTLVN
Sbjct: 53 VKSGDRLHLLIPPVKPLDLQPQDIPLDILYEDDQLIIINKPAGLVVHPSPGHEQGTLVNA 112
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HCS LA G RPGIVHRLDK T+G LVVAK
Sbjct: 113 LLSHCS--NLAGI----------------------GGVQRPGIVHRLDKDTTGALVVAKT 148
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+++H HL +Q K T R Y+ + GVP +SG+I + I R P R +MA +P
Sbjct: 149 DYAHHHLQQQLKAKTARREYLGIVYGVPKTTSGKINLSIGRHPIERKKMAVVPLEKG--- 205
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++++E L G +L+ +RLETGRTHQ
Sbjct: 206 GREAITHWEILERL--GNYSLIYFRLETGRTHQ 236
>gi|428201072|ref|YP_007079661.1| RluA family pseudouridine synthase [Pleurocapsa sp. PCC 7327]
gi|427978504|gb|AFY76104.1| pseudouridine synthase, RluA family [Pleurocapsa sp. PCC 7327]
Length = 309
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 127/213 (59%), Gaps = 29/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ GD + TI QPL + E+IPLDI+YEDD ++++NKPA +VVHPAPG+ GTLVN
Sbjct: 53 VREGDRLQITIPPTQPLDLQPEEIPLDILYEDDYLIIINKPADLVVHPAPGHENGTLVNA 112
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC P LA I G S RPGIVHRLDK T+G LV+AK
Sbjct: 113 LLSHC--PNLA---------------------GIGGVS-RPGIVHRLDKDTTGALVIAKT 148
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E +H +L Q K T R Y+ + GVP SG I +PI R +R +MA +P K G
Sbjct: 149 EFAHQNLQAQLKAKTARREYLGIVYGVPKTESGIINLPIGRHRVDRKKMAVVP-VEKGG- 206
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++++E L G L+++RLETGRTHQ
Sbjct: 207 -REAITHWQILERL--GNYTLMQFRLETGRTHQ 236
>gi|169343529|ref|ZP_02864528.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
gi|169298089|gb|EDS80179.1| pseudouridine synthase, RluA family [Clostridium perfringens C str.
JGS1495]
Length = 306
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 130/210 (61%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V I E + L+ EAEDIPL+IVYED++V+VVNKP MVVHPAPGN TGTLVN +LH
Sbjct: 60 GDCVEVEIPEPEELKVEAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLH 119
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC DD S I+G IRPGIVHR+DK TSG+LVVAK++++
Sbjct: 120 HC--------------------DD---LSGINGV-IRPGIVHRIDKDTSGILVVAKNDNA 155
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+EQFK H+I+R Y ++ G + G I+ P+ R +R++ A + +
Sbjct: 156 HQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGRHHRDRLKYAVVK------DGKR 209
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+V+++ +LV+ LETGRTHQ
Sbjct: 210 AVTHYEVLKVF--NSCSLVKCNLETGRTHQ 237
>gi|442805040|ref|YP_007373189.1| pseudouridine synthase RluA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740890|gb|AGC68579.1| pseudouridine synthase RluA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 306
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 126/210 (60%), Gaps = 30/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G + + + +PLR + E+IPLDIVYED ++L++NKP +MVVHPAPGN TLVN +L+
Sbjct: 61 GMKITVYVPQPEPLRVKPENIPLDIVYEDSDILIINKPRNMVVHPAPGNEDNTLVNAVLY 120
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC ++ SD I IRPGIVHR+DK T+GL+ VAK+ +
Sbjct: 121 HCG---------DSLSDINGI--------------IRPGIVHRIDKDTTGLIAVAKNNKA 157
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K H+++RVY ++ G+ + G I+ PI R P +R +MA +PG K
Sbjct: 158 HQSLALQLKEHSMKRVYDAIVEGIIREDRGVIDAPIGRHPVDRKKMAVVPGKGK-----E 212
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + ++V+E L G+ V RLETGRTHQ
Sbjct: 213 AITHFEVLERLK--GATYVRLRLETGRTHQ 240
>gi|182625703|ref|ZP_02953472.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
gi|177909105|gb|EDT71580.1| pseudouridine synthase, RluA family [Clostridium perfringens D str.
JGS1721]
Length = 306
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 130/210 (61%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V I E + L+ EAEDIPL+IVYED++V+VVNKP MVVHPAPGN TGTLVN +LH
Sbjct: 60 GDCVEVEIPEPEELKVEAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLH 119
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC DD S I+G IRPGIVHR+DK TSG+LVVAK++++
Sbjct: 120 HC--------------------DD---LSGINGV-IRPGIVHRIDKDTSGILVVAKNDNA 155
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+EQFK H+I+R Y ++ G + G I+ P+ R +R++ A + +
Sbjct: 156 HQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGRHHRDRLKYAVVK------DGKR 209
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+V+++ +LV+ LETGRTHQ
Sbjct: 210 AVTHYEVLKVF--NSCSLVKCTLETGRTHQ 237
>gi|154483515|ref|ZP_02025963.1| hypothetical protein EUBVEN_01219 [Eubacterium ventriosum ATCC
27560]
gi|149735425|gb|EDM51311.1| pseudouridine synthase, RluA family [Eubacterium ventriosum ATCC
27560]
Length = 301
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 133/228 (58%), Gaps = 34/228 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMV 73
+ L+ + ++ V+ D +N I +P+ A AE+IPLDI+YEDD+ L+VNKP MV
Sbjct: 41 ILLNDKPVKANYKVQPSDKININIP--KPVEANIVAENIPLDIIYEDDDFLIVNKPKDMV 98
Query: 74 VHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 133
VHPAPG+ TGTLVNG+++HC + S+I+G +RPGIVH
Sbjct: 99 VHPAPGHYTGTLVNGLMYHC----------------------KNHLSNINGV-LRPGIVH 135
Query: 134 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN 193
R+DK T+G L++ K+++SH ++EQ K+H+I R Y+ + GV SG I PI R P N
Sbjct: 136 RIDKDTTGALIICKNDYSHNFIAEQLKVHSITRKYVGIVQGVVKDESGTINAPIGRHPVN 195
Query: 194 RIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R MA H + A + YKV++ +E++LETGRTHQ
Sbjct: 196 RKEMAI-----NHKNGKEAVTHYKVLKRF--DKYTFMEFQLETGRTHQ 236
>gi|425442528|ref|ZP_18822771.1| putative enzyme [Microcystis aeruginosa PCC 9717]
gi|389716392|emb|CCH99374.1| putative enzyme [Microcystis aeruginosa PCC 9717]
Length = 308
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 127/214 (59%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL AE I LDI+YEDD ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVGQGDRLKITIPDSQPLELTAEAIELDILYEDDYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +V+AK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R YI+L GVP +G I++PI R ++R +MA I K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYIALVHGVPKTETGTIDLPIGRHRSDRQKMAII-AVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQVKERL--GNYTLMEFRLETGRTHQ 237
>gi|18310832|ref|NP_562766.1| hypothetical protein CPE1850 [Clostridium perfringens str. 13]
gi|110801362|ref|YP_696533.1| RluA family pseudouridine synthase [Clostridium perfringens ATCC
13124]
gi|168206096|ref|ZP_02632101.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|168210787|ref|ZP_02636412.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|422346519|ref|ZP_16427433.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|422874769|ref|ZP_16921254.1| RluA family pseudouridine synthase [Clostridium perfringens F262]
gi|18145514|dbj|BAB81556.1| conserved hypothetical protein [Clostridium perfringens str. 13]
gi|110676009|gb|ABG84996.1| pseudouridine synthase, RluA family [Clostridium perfringens ATCC
13124]
gi|170662443|gb|EDT15126.1| pseudouridine synthase, RluA family [Clostridium perfringens E str.
JGS1987]
gi|170711120|gb|EDT23302.1| pseudouridine synthase, RluA family [Clostridium perfringens B str.
ATCC 3626]
gi|373226064|gb|EHP48391.1| RluA family pseudouridine synthase [Clostridium perfringens
WAL-14572]
gi|380304410|gb|EIA16699.1| RluA family pseudouridine synthase [Clostridium perfringens F262]
Length = 306
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 130/210 (61%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V I E + L+ EAEDIPL+IVYED++V+VVNKP MVVHPAPGN TGTLVN +LH
Sbjct: 60 GDCVEVEIPEPEELKVEAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLH 119
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC DD S I+G IRPGIVHR+DK TSG+LVVAK++++
Sbjct: 120 HC--------------------DD---LSGINGV-IRPGIVHRIDKDTSGILVVAKNDNA 155
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+EQFK H+I+R Y ++ G + G I+ P+ R +R++ A + +
Sbjct: 156 HQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGRHHRDRLKYAVVK------DGKR 209
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+V+++ +LV+ LETGRTHQ
Sbjct: 210 AVTHYEVLKVF--NSCSLVKCTLETGRTHQ 237
>gi|422304578|ref|ZP_16391921.1| putative enzyme [Microcystis aeruginosa PCC 9806]
gi|389790244|emb|CCI13847.1| putative enzyme [Microcystis aeruginosa PCC 9806]
Length = 308
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 128/214 (59%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL+ AE I LDI+YEDD ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVGQGDRLKITIPDSQPLQLSAEAIELDILYEDDYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +V+AK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y++L GVP +G I++PI R ++R +MA I K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYMALVHGVPKSETGTIDLPIGRHRSDRQKMAII-AVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQVKERL--GNYTLMEFRLETGRTHQ 237
>gi|166367953|ref|YP_001660226.1| ribosomal large subunit pseudouridine synthase D [Microcystis
aeruginosa NIES-843]
gi|166090326|dbj|BAG05034.1| ribosomal large subunit pseudouridine synthase D [Microcystis
aeruginosa NIES-843]
Length = 308
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 127/214 (59%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL AE I LDI+YEDD ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVGQGDRLKITIPDSQPLELTAEAIELDILYEDDYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +V+AK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R YI+L GVP +G I++PI R ++R +MA I K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYIALVHGVPKSETGTIDLPIGRHRSDRQKMAII-AVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQVKERL--GNYTLMEFRLETGRTHQ 237
>gi|376260970|ref|YP_005147690.1| RluA family pseudouridine synthase [Clostridium sp. BNL1100]
gi|373944964|gb|AEY65885.1| pseudouridine synthase, RluA family [Clostridium sp. BNL1100]
Length = 304
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 138/226 (61%), Gaps = 30/226 (13%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
++++ ++ ++ VK GD + + + + L E EDIPLDIVYED +++V+NKP MVVH
Sbjct: 40 IWVNEVQVKSNYKVKPGDSIKVNVPDAEILDVEPEDIPLDIVYEDKHIIVINKPKGMVVH 99
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA GN TGTLVN ++ HC ++ SD I+G IRPGIVHR+
Sbjct: 100 PAVGNYTGTLVNALMKHCG---------DSLSD-------------INGV-IRPGIVHRI 136
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLLVVAK +H LSE+ K H I+R YI+L G+ ++SG+I+ PI R P R
Sbjct: 137 DKDTSGLLVVAKSNIAHERLSEKLKTHDIKREYIALVDGIIYENSGKIDAPIGRHPVERK 196
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+M + ++G R+A + +KV+E + +E +LETGRTHQ
Sbjct: 197 KMCV---NTENG--RNAITHFKVLERFP--NTTYLELKLETGRTHQ 235
>gi|427407864|ref|ZP_18898066.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
gi|425713827|gb|EKU76839.1| RluA family pseudouridine synthase [Sphingobium yanoikuyae ATCC
51230]
Length = 316
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 133/219 (60%), Gaps = 29/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L+ S V G + T+ L A A+DIPLDIV+ED +++VV+KPA +VVHPA GN
Sbjct: 53 LNPSMKVAVGQDYSITLPAPVALDAVAQDIPLDIVHEDADLIVVDKPAGLVVHPAAGNLD 112
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +LHHC D + S G RPGIVHR+DK TSGL
Sbjct: 113 GTLVNALLHHC---------------------DGQLSGI--GGVARPGIVHRIDKDTSGL 149
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK + +H L+ QFK H+I+R+Y ++ G+P+ SG ++ I R +R +MA
Sbjct: 150 LVVAKSDKAHEGLARQFKDHSIDRLYAAIVYGIPTPGSGTVDAWIGRSDADRKKMAV--- 206
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ G+ +HA + Y+V+E L G+A+VE RLETGRTHQ
Sbjct: 207 -HREGRGKHAVTHYRVMERLR--GAAMVECRLETGRTHQ 242
>gi|443667130|ref|ZP_21133855.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
DIANCHI905]
gi|159029548|emb|CAO87700.1| rluD [Microcystis aeruginosa PCC 7806]
gi|443331119|gb|ELS45796.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
DIANCHI905]
Length = 308
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 129/214 (60%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL+ AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVGQGDRLKITIPDSQPLQLSAEAIDLDILYEDEYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +V+AK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y++L GVP +G I++PISR ++R +MA I K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYMALVHGVPKSETGTIDLPISRHRSDRQKMAII-AVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQVKERL--GNYTLMEFRLETGRTHQ 237
>gi|163814069|ref|ZP_02205461.1| hypothetical protein COPEUT_00222 [Coprococcus eutactus ATCC 27759]
gi|158450518|gb|EDP27513.1| pseudouridine synthase, RluA family [Coprococcus eutactus ATCC
27759]
Length = 304
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 132/218 (60%), Gaps = 33/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V+ GDM++ ++ + + EDIPLDI+YEDD+V++VNKP MVVHPAPG+ +GTL
Sbjct: 52 SYKVRAGDMIDISVPDPVSIDIVPEDIPLDIIYEDDDVILVNKPKGMVVHPAPGHYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG--ASIRPGIVHRLDKGTSGLL 143
VNG+++H F SS+SG RPGIVHR+D T+G+L
Sbjct: 112 VNGLMYH-------------------------FGSSLSGINGEFRPGIVHRIDMDTTGVL 146
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VV K++++H LSEQ H+I R Y ++ G S G ++ PI R P +R +MA +
Sbjct: 147 VVCKNDNAHRALSEQLHEHSITRKYYAIVYGNISSDEGTVDAPIGRSPKDRKKMAI---N 203
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N++G R A + Y+V+E GG +E +LETGRTHQ
Sbjct: 204 NRNG--RRAVTHYRVLERF-GGRYTYIECQLETGRTHQ 238
>gi|88802386|ref|ZP_01117913.1| ribosomal large subunit pseudouridine synthase D [Polaribacter
irgensii 23-P]
gi|88781244|gb|EAR12422.1| ribosomal large subunit pseudouridine synthase D [Polaribacter
irgensii 23-P]
Length = 346
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 131/219 (59%), Gaps = 35/219 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRA--EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
+H VK D+V ++ P + AEDIPLDI+YEDD V+VVNKPA MVVHP GN +G
Sbjct: 66 NHKVKPNDVVRIVLA-YPPAESLLVAEDIPLDIIYEDDTVIVVNKPAGMVVHPGHGNYSG 124
Query: 84 TLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVNG++HH +LPT +SN+ RPG+VHR+DK TSGL
Sbjct: 125 TLVNGLIHHIENLPT--NSNE------------------------RPGLVHRIDKDTSGL 158
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK E + A+LS QF T ER+Y +L G ++ GRIE I R NR++MA P
Sbjct: 159 LVVAKTEFAMANLSRQFFERTTERLYYALVWGNVAEDEGRIEGNIGRSLKNRLQMAVFPD 218
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +HA S YKV+E L LVE +LETGRTHQ
Sbjct: 219 GDF---GKHAVSHYKVLERLT--YVTLVECKLETGRTHQ 252
>gi|220928062|ref|YP_002504971.1| pseudouridine synthase [Clostridium cellulolyticum H10]
gi|219998390|gb|ACL74991.1| pseudouridine synthase, RluA family [Clostridium cellulolyticum
H10]
Length = 304
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 132/216 (61%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + + E + L E EDIPLDIVYED +++V+NKP MVVHPA GN TGTL
Sbjct: 50 NYRVKTDDNIKVNVPEAEILDVEPEDIPLDIVYEDKHIIVINKPKGMVVHPAVGNYTGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC ++ SD I+G IRPGIVHR+DK TSGLLVV
Sbjct: 110 VNALMKHCG---------DSLSD-------------INGV-IRPGIVHRIDKDTSGLLVV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK +H LSE+ K H I+R YI+L G+ ++SG+I+ PI R+P R +M + +
Sbjct: 147 AKSNIAHERLSEKLKTHDIKREYIALVDGIIYENSGKIDAPIGRNPVERKKMCV---NTE 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G R+A + +KV+E + +E +LETGRTHQ
Sbjct: 204 NG--RNAITHFKVLERFQ--NATYLELKLETGRTHQ 235
>gi|366088576|ref|ZP_09455049.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
acidipiscis KCTC 13900]
Length = 300
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 126/215 (58%), Gaps = 33/215 (15%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ VK GD V E+ L A+DIPLDIVYEDD+VLVVNKPA MVVHPAPG+ TLV
Sbjct: 49 YQVKDGDQVTINEPEVHKLDLVAQDIPLDIVYEDDDVLVVNKPAGMVVHPAPGHPDQTLV 108
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N +L+HC L S I+G ++RPGIVHR+D+ TSGLL+VA
Sbjct: 109 NALLYHCPL------------------------SKING-TLRPGIVHRIDRDTSGLLMVA 143
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K++H+H L++Q K T R YI+L G+ + G + P++R P +R + A + G
Sbjct: 144 KNDHAHHSLAQQLKDKTTIRYYIALVHGIIKEDHGTVNAPLARSPKDRKKQAVVAG---- 199
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+ LV+ RLETGRTHQ
Sbjct: 200 --GRRAVTHFEVLRRYQ--NYTLVKCRLETGRTHQ 230
>gi|381199618|ref|ZP_09906765.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
yanoikuyae XLDN2-5]
Length = 298
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 133/219 (60%), Gaps = 29/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L+ S V G + T+ L A A+DIPLDIV+ED +++VV+KPA +VVHPA GN
Sbjct: 35 LNPSMKVAVGQDYSITLPAPVALDAVAQDIPLDIVHEDADLIVVDKPAGLVVHPAAGNLD 94
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +LHHC D + S G RPGIVHR+DK TSGL
Sbjct: 95 GTLVNALLHHC---------------------DGQLSGI--GGVARPGIVHRIDKDTSGL 131
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK + +H L+ QFK H+I+R+Y ++ G+P+ SG ++ I R +R +MA
Sbjct: 132 LVVAKSDKAHEGLARQFKDHSIDRLYAAIVYGIPTPGSGTVDAWIGRSDADRKKMAV--- 188
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ G+ +HA + Y+V+E L G+A+VE RLETGRTHQ
Sbjct: 189 -HREGRGKHAVTHYRVMERLR--GAAMVECRLETGRTHQ 224
>gi|323489511|ref|ZP_08094738.1| putative RNA pseudouridine synthase ylyB [Planococcus donghaensis
MPA1U2]
gi|323396642|gb|EGA89461.1| putative RNA pseudouridine synthase ylyB [Planococcus donghaensis
MPA1U2]
Length = 303
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 138/233 (59%), Gaps = 32/233 (13%)
Query: 9 NQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 68
N V A+ ++ + + ++ V+ D++ T EL+ L ED+ L+IVYED++VLVVNK
Sbjct: 35 NWVKEGAVKVNGETVKPNYKVRLQDIIIVTPPELEELDVVPEDLNLEIVYEDEDVLVVNK 94
Query: 69 PAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 128
P MVVHPAPG+A GTLVNG++HHC+ D+ S I+G +R
Sbjct: 95 PKGMVVHPAPGHAKGTLVNGLMHHCT----------------DL-------SGINGV-VR 130
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 188
PGIVHR+DK TSGLL+VAK++ +H L +Q T+ R Y++L G G I+ PI+
Sbjct: 131 PGIVHRIDKDTSGLLMVAKNDAAHTSLVDQLVKKTVTRKYVALVHGHIPHDKGTIQAPIA 190
Query: 189 RDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RDP R MA + + +HA + ++V+E G LVE RLETGRTHQ
Sbjct: 191 RDPKERQNMAIV------DKGKHAVTHFRVLERF--GNFTLVECRLETGRTHQ 235
>gi|404371419|ref|ZP_10976724.1| RluA family pseudouridine synthase [Clostridium sp. 7_2_43FAA]
gi|226912453|gb|EEH97654.1| RluA family pseudouridine synthase [Clostridium sp. 7_2_43FAA]
Length = 305
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 31/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
A+ ++ ++ ++ ++ D + ++ E L E EDI L+IVYED++V+V+NKP +VV
Sbjct: 42 AILVNNKEVKSNYKLRNHDEIIVSMPEPIELDVEPEDIDLNIVYEDEDVIVLNKPQGVVV 101
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPGN +GTLVNG+L+HC +D+S I+G IRPGIVHR
Sbjct: 102 HPAPGNYSGTLVNGLLYHC----------------KDLS-------GINGV-IRPGIVHR 137
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSG+LV+AK++ +H HL++QFK H+I+R Y +L G S+ G ++ PI R+ +R
Sbjct: 138 IDKDTSGILVIAKNDDAHNHLAKQFKNHSIKREYYALVEGKFSKIEGTVDKPIGRNKKDR 197
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++MA + + A + Y V+E G+ALV+ LETGRTHQ
Sbjct: 198 LKMAIME------DGKRAVTHYNVLE-QYNNGTALVKCTLETGRTHQ 237
>gi|425464645|ref|ZP_18843955.1| putative enzyme [Microcystis aeruginosa PCC 9809]
gi|389833297|emb|CCI22302.1| putative enzyme [Microcystis aeruginosa PCC 9809]
Length = 308
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 126/214 (58%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL AE I LDI+YEDD ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVGQGDRLKITIPDSQPLELTAEAIELDILYEDDYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +V+AK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R YI+L GVP G I++PI R ++R +MA I K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYIALVHGVPKSEIGTIDLPIGRHRSDRQKMAII-AVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQVKERL--GNYTLMEFRLETGRTHQ 237
>gi|251778563|ref|ZP_04821483.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243082878|gb|EES48768.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 302
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 132/222 (59%), Gaps = 32/222 (14%)
Query: 21 DKLSVS-HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
DKL S + +K D + T+ E++ L+ E+EDI LDI+YED +V+VVNK MVVHPAPG
Sbjct: 46 DKLIKSNYKLKACDEIVITMPEVETLKVESEDIDLDILYEDKDVIVVNKEQGMVVHPAPG 105
Query: 80 NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 139
N GTLVN +L HC+ D+ SSI+G IRPGIVHR+DK T
Sbjct: 106 NYNGTLVNALLFHCT----------------DL-------SSINGV-IRPGIVHRIDKDT 141
Query: 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAA 199
SG+LV+AK++ SH L+ Q K H++ R Y +L G SG I+ P+ RD NR+++A
Sbjct: 142 SGVLVIAKNDESHNKLAAQLKDHSMNREYYALVEGRFKNDSGVIDKPLGRDKKNRLKIAI 201
Query: 200 IPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y+V+E G L++ +LETGRTHQ
Sbjct: 202 TE------DGRRAITHYEVLE-RYDTGCTLIKCKLETGRTHQ 236
>gi|83312285|ref|YP_422549.1| pseudouridylate synthase, 23S RNA-specific [Magnetospirillum
magneticum AMB-1]
gi|82947126|dbj|BAE51990.1| Pseudouridylate synthase, 23S RNA-specific [Magnetospirillum
magneticum AMB-1]
Length = 505
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 122/216 (56%), Gaps = 28/216 (12%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S VK G + P + E +DI L +VYED++++V++KPA MVVHPAPGN TL
Sbjct: 237 SLRVKPGQCFVVDVPPDAPAQPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETL 296
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC E + I G RPGIVHR+DK TSGLLV
Sbjct: 297 VNALLAHCG----------------------ESLAGIGGVK-RPGIVHRIDKDTSGLLVA 333
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L+ QF HT+ER Y +L G PS G IE I R+PN+R +MA + K
Sbjct: 334 AKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEIEGNIGRNPNDRKKMAVVKSGGK 393
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A +RY+V++ AGG +LVE RL TGRTHQ
Sbjct: 394 -----PALTRYRVLKSFAGGAVSLVECRLATGRTHQ 424
>gi|390438323|ref|ZP_10226804.1| putative enzyme [Microcystis sp. T1-4]
gi|389838270|emb|CCI30928.1| putative enzyme [Microcystis sp. T1-4]
Length = 308
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 127/214 (59%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVAQGDRLKITIPDSQPLELTAEAIELDILYEDEYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +VVAK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGVQRPGIVHRLDKDTTGAIVVAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y++L GVP +G I++PI R ++R +MA I K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYMALVHGVPKSETGTIDLPIGRHRSDRQKMAII-AVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQVKERL--GNYTLMEFRLETGRTHQ 237
>gi|326203544|ref|ZP_08193408.1| pseudouridine synthase, RluA family [Clostridium papyrosolvens DSM
2782]
gi|325986364|gb|EGD47196.1| pseudouridine synthase, RluA family [Clostridium papyrosolvens DSM
2782]
Length = 304
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 134/216 (62%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK GD + ++ + + L E EDIPLDIVYED +++V+NKP MVVHPA GN +GTL
Sbjct: 50 NYKVKPGDNIKVSVPDAEILDVEPEDIPLDIVYEDKHIIVINKPKGMVVHPAVGNYSGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC ++ SD I+G IRPGIVHR+DK TSGLLVV
Sbjct: 110 VNALMKHCG---------DSLSD-------------INGV-IRPGIVHRIDKDTSGLLVV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK +H LSE+ K H I+R YI+L G+ ++SG+I+ PI R P R +M+ + +
Sbjct: 147 AKSNIAHERLSEKLKTHDIKREYIALVDGIIYENSGKIDAPIGRHPVERKKMSV---NTQ 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G R+A + +KV+E + V+ +LETGRTHQ
Sbjct: 204 NG--RNAITHFKVLERFP--SATYVQLKLETGRTHQ 235
>gi|86605450|ref|YP_474213.1| RluA family pseudouridine synthase [Synechococcus sp. JA-3-3Ab]
gi|86553992|gb|ABC98950.1| pseudouridine synthase, RluA family [Synechococcus sp. JA-3-3Ab]
Length = 310
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 125/213 (58%), Gaps = 30/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
++ GD + I P + E IPLDI+YED+++LV+NKP +VVHPAPG+A+GTLV+
Sbjct: 57 LQAGDQIEVRIPPATPTPLQPERIPLDILYEDEDLLVINKPRGLVVHPAPGHASGTLVHA 116
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC P L+ N E RPGIVHRLDK T+G LV+AK
Sbjct: 117 LLAHC--PRLSGINGEQ----------------------RPGIVHRLDKDTTGALVIAKH 152
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H HL Q + T R+Y+ + G P+QS G I PI R P +R +MA +P GQ
Sbjct: 153 DQAHQHLQAQIQAKTARRIYLGVVFGRPAQSQGTISAPIGRHPVDRQKMAVVPP----GQ 208
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+E L G L+++ LETGRTHQ
Sbjct: 209 GRAAVTHWQVLERL--GNYTLMQFELETGRTHQ 239
>gi|451819459|ref|YP_007455660.1| pseudouridine synthase, RluA family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785438|gb|AGF56406.1| pseudouridine synthase, RluA family [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 303
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 132/216 (61%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D + T SE + L EAEDIPL+I+YED +++VVNK MVVHPAPGN GTL
Sbjct: 52 NYKLKTFDKIEVTFSEPEVLNVEAEDIPLNILYEDADIVVVNKEQGMVVHPAPGNYNGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC+ D+ SSI+G IRPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLYHCT----------------DL-------SSINGI-IRPGIVHRIDKDTSGVLVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LSEQ K H+++R Y +L G G I+ P++R+ +R++M + G
Sbjct: 148 AKNDEAHNKLSEQLKDHSMKREYYALVEGRIKNDKGIIDKPLARNKKDRLKMGIVEG--- 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + Y+V+E G +L++ LETGRTHQ
Sbjct: 205 ---GKRAVTHYEVLE--RYNGFSLIKCVLETGRTHQ 235
>gi|168215478|ref|ZP_02641103.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
gi|182382386|gb|EDT79865.1| pseudouridine synthase, RluA family [Clostridium perfringens NCTC
8239]
Length = 306
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 130/210 (61%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V I E + L+ EAEDIPL+IVYED++V+VVNKP MVVHPAPGN TGTLVN +L+
Sbjct: 60 GDCVEVEIPEPEELKVEAEDIPLNIVYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLY 119
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC DD S I+G IRPGIVHR+DK TSG+LVVAK++++
Sbjct: 120 HC--------------------DD---LSGINGV-IRPGIVHRIDKDTSGILVVAKNDNA 155
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+EQFK H+I+R Y ++ G + G I+ P+ R +R++ A + +
Sbjct: 156 HQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGRHHRDRLKYAVVK------DGKR 209
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+V+++ +LV+ LETGRTHQ
Sbjct: 210 AVTHYEVLKVF--NSCSLVKCTLETGRTHQ 237
>gi|83589720|ref|YP_429729.1| ribosomal large subunit pseudouridine synthase D [Moorella
thermoacetica ATCC 39073]
gi|83572634|gb|ABC19186.1| ribosomal large subunit pseudouridine synthase D [Moorella
thermoacetica ATCC 39073]
Length = 306
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 133/220 (60%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
+L ++ ++GG+ V + E L A E IPLDI+YED++++VVNKP MVVHPAPG+
Sbjct: 46 RLKANYRLRGGERVRVRLPEPTLLAARPEAIPLDILYEDEDIIVVNKPQGMVVHPAPGSE 105
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
GTLVN +L+HC D+ S I+G +RPGIVHRLDK TSG
Sbjct: 106 GGTLVNALLYHCG----------------DL-------SGINGV-LRPGIVHRLDKDTSG 141
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
+LV AK++ +H L+ Q K H+++R+Y++L G ++ GR+E PI R P +R RMA
Sbjct: 142 ILVAAKNDAAHRGLAAQIKDHSMKRIYLALVHGEVAEPRGRVEAPIGRHPVDRQRMAV-- 199
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R A + Y+V+E G L+E RLETGRTHQ
Sbjct: 200 ---TLKNSRPAVTHYRVVEHFP--GYTLLEARLETGRTHQ 234
>gi|75909134|ref|YP_323430.1| ribosomal large subunit pseudouridine synthase D [Anabaena
variabilis ATCC 29413]
gi|75702859|gb|ABA22535.1| ribosomal large subunit pseudouridine synthase D [Anabaena
variabilis ATCC 29413]
Length = 312
Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 126/215 (58%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
N+K GD + + E QPL +AEDIPLDI+YEDD +L++NKPA +VVHPAPG++ GTLVN
Sbjct: 54 NLKVGDRITLEVPEAQPLELQAEDIPLDILYEDDQLLILNKPAGLVVHPAPGHSHGTLVN 113
Query: 88 GILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+L HC LP + G RPGIVHRLDK T+G + +A
Sbjct: 114 ALLAHCPHLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIA 148
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + ++ H+ Q + T R Y+ + G P SSG++++PI R P +R +MA +P
Sbjct: 149 KTDIAYKHIQAQLQTKTARREYLGVVYGAPKTSSGKVDLPIGRHPQDRKKMAIVPVEEG- 207
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L G L+ ++LETGRTHQ
Sbjct: 208 --GRSAITHWQIQERL--GNFTLIHFQLETGRTHQ 238
>gi|332981610|ref|YP_004463051.1| ribosomal large subunit pseudouridine synthase D [Mahella
australiensis 50-1 BON]
gi|332699288|gb|AEE96229.1| ribosomal large subunit pseudouridine synthase D [Mahella
australiensis 50-1 BON]
Length = 304
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 131/215 (60%), Gaps = 32/215 (14%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ +K GD++ + EL+P+ + EDIPL+I+YED++++V+NKP MVVHPA GN + TLV
Sbjct: 53 YKLKDGDIIKVEVPELRPIDIQPEDIPLNILYEDEDIIVINKPQGMVVHPAAGNYSATLV 112
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N +L HC +D+ S I+G IRPGIVHR+DK TSG+LVVA
Sbjct: 113 NALLAHC----------------KDL-------SGING-EIRPGIVHRIDKDTSGVLVVA 148
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K++ +H L++Q K T R Y++L G + +G I PI+R P +R +MA + G
Sbjct: 149 KNDMAHVALAQQIKEKTAIRKYVALLEGDIKEDTGVINAPIARHPTDRKKMAVVSG---- 204
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV+E G L+E RLETGRTHQ
Sbjct: 205 --GRSAVTHFKVLERF--GRYTLIEARLETGRTHQ 235
>gi|310828904|ref|YP_003961261.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
limosum KIST612]
gi|308740638|gb|ADO38298.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
limosum KIST612]
Length = 307
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 134/218 (61%), Gaps = 30/218 (13%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S+ +KG +++ I E E E+IPL+I+YED++V+VVNKP MVVHPAPG+ +G
Sbjct: 50 KASYKLKGKEIITMEIPEPAESTIEPENIPLEIIYEDEDVIVVNKPKGMVVHPAPGSPSG 109
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN ++HH T A SN I+G RPGI+HR+DK TSGLL
Sbjct: 110 TLVNALMHH----TGALSN-------------------INGV-YRPGIIHRIDKDTSGLL 145
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+VAK+ +H +L+EQ K HTI R Y +L G+ + G I++PI R P +R+RMA + +
Sbjct: 146 MVAKNNAAHQNLTEQLKAHTITRQYKALVKGIMENNRGTIDMPIGRHPKDRVRMAVVKEN 205
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+K A + ++ ++ A G L+++RLETGRTHQ
Sbjct: 206 SK-----EAVTHFETLKRYA-EGYTLMQFRLETGRTHQ 237
>gi|414076345|ref|YP_006995663.1| pseudouridine synthase [Anabaena sp. 90]
gi|413969761|gb|AFW93850.1| pseudouridine synthase [Anabaena sp. 90]
Length = 311
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 128/215 (59%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
N+K GD++ I +QPL AE+IPLDI+YEDD ++++NKPA +VVHPAPG+ GTLVN
Sbjct: 54 NLKTGDLITLEIPTVQPLAISAENIPLDILYEDDELIIINKPAGLVVHPAPGHPDGTLVN 113
Query: 88 GILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
IL HC +LP + G RPGIVHRLDK T+G + +A
Sbjct: 114 AILAHCPNLPGI-------------------------GGIQRPGIVHRLDKDTTGAIAIA 148
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + ++ HL Q + T R Y+ L GVP +G I++PI R+P +R RMA + S +
Sbjct: 149 KTDLAYQHLQAQLQAKTARREYLGLIYGVPKTETGSIDLPIGRNPQDRKRMAIV--SIED 206
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G R+A + ++V E G L+ ++LETGRTHQ
Sbjct: 207 G-GRNAVTHWRVKERF--GNYTLIHFQLETGRTHQ 238
>gi|325680269|ref|ZP_08159829.1| pseudouridine synthase, RluA family [Ruminococcus albus 8]
gi|324107978|gb|EGC02234.1| pseudouridine synthase, RluA family [Ruminococcus albus 8]
Length = 304
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 130/219 (59%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+S ++ +K GD++ I E Q L+AE +DIP+DIVYEDD +LVVNKP MVVHPA GN
Sbjct: 50 VSKNYKLKNGDVITVDIPEPQELKAEPQDIPIDIVYEDDALLVVNKPKGMVVHPAAGNPD 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC + SSI+G IRPGIVHR+DK TSGL
Sbjct: 110 GTLVNALLYHC----------------------KGRLSSINGV-IRPGIVHRIDKFTSGL 146
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK + +H L+ Q K H+ R Y ++ G + +G I PI R +R +M
Sbjct: 147 LMVAKTDKAHNSLAAQIKEHSFTREYNAVCVGRFKEPTGTINEPIGRSKFDRKKMCVT-- 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ ++ A + Y+VIE L G +LV +RLETGRTHQ
Sbjct: 205 ---YQNSKEAVTHYEVIEEL--GQYSLVRFRLETGRTHQ 238
>gi|425445524|ref|ZP_18825552.1| putative enzyme [Microcystis aeruginosa PCC 9443]
gi|389734479|emb|CCI01876.1| putative enzyme [Microcystis aeruginosa PCC 9443]
Length = 308
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 128/214 (59%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL+ AE I L+I+YEDD ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVAQGDRLKITIPDSQPLQLSAEAIDLEILYEDDYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +V+AK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y++L GVP +G I++PI R ++R +MA I K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYMALVHGVPKSETGTIDLPIGRHRSDRQKMAII-AVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + +++ E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQIKERL--GNYTLMEFRLETGRTHQ 237
>gi|110803816|ref|YP_699133.1| pseudouridine synthase [Clostridium perfringens SM101]
gi|110684317|gb|ABG87687.1| pseudouridine synthase, RluA family [Clostridium perfringens SM101]
Length = 306
Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/210 (44%), Positives = 130/210 (61%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V I E + L+ EAEDIPL+I+YED++V+VVNKP MVVHPAPGN TGTLVN +L+
Sbjct: 60 GDCVEVEIPEPEELKVEAEDIPLNIIYEDEDVIVVNKPKGMVVHPAPGNYTGTLVNALLY 119
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC DD S I+G IRPGIVHR+DK TSG+LVVAK++++
Sbjct: 120 HC--------------------DD---LSGINGV-IRPGIVHRIDKDTSGILVVAKNDNA 155
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+EQFK H+I+R Y ++ G + G I+ P+ R +R++ A + +
Sbjct: 156 HQKLAEQFKDHSIKREYYAIVEGRFKKEGGTIDAPLGRHHRDRLKYAVVK------DGKR 209
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+V+++ +LV+ LETGRTHQ
Sbjct: 210 AVTHYEVLKVF--NSCSLVKCTLETGRTHQ 237
>gi|94497522|ref|ZP_01304091.1| Pseudouridine synthase, RluD [Sphingomonas sp. SKA58]
gi|94422939|gb|EAT07971.1| Pseudouridine synthase, RluD [Sphingomonas sp. SKA58]
Length = 317
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 131/220 (59%), Gaps = 29/220 (13%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
++S S V G T+ PL A+DIPL IV+ED ++LVV+KPA +VVHPA GN
Sbjct: 53 RISGSMKVAEGQRFTITLPPPVPLDTVAQDIPLTIVHEDADLLVVDKPAGLVVHPAAGNL 112
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
GTLVN +LHHC+ S I G + RPGIVHR+DK TSG
Sbjct: 113 DGTLVNALLHHCA----------------------GQLSGIGGVA-RPGIVHRIDKDTSG 149
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LLVVAK + +H L+ QFK H+IER Y ++T G+P +G ++ I R +R +MA
Sbjct: 150 LLVVAKTDRAHEGLARQFKDHSIERAYAAITYGIPVPPAGTVDSWIGRSDADRKKMAV-- 207
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ G+ +HA + Y+ ++ L G+ALVE RLETGRTHQ
Sbjct: 208 --HREGRGKHAVTHYRTLDRLR--GAALVECRLETGRTHQ 243
>gi|150016471|ref|YP_001308725.1| RluA family pseudouridine synthase [Clostridium beijerinckii NCIMB
8052]
gi|149902936|gb|ABR33769.1| pseudouridine synthase, RluA family [Clostridium beijerinckii NCIMB
8052]
Length = 305
Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 133/216 (61%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ D + T SE + LR EAE+IP++I+YED +V+VVNKP MVVHPAPGN GTL
Sbjct: 52 NYKLRALDEIEVTFSEPEVLRVEAEEIPINILYEDKDVVVVNKPQGMVVHPAPGNYNGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC +D+ SSI+G IRPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLYHC----------------KDL-------SSINGI-IRPGIVHRIDKDTSGVLVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS+Q K H+++R Y +L G G I+ P++R+ +R+++ + G
Sbjct: 148 AKNDEAHNKLSDQLKDHSMKREYYALVEGRLKNDKGIIDKPLARNKRDRLKIGIVEG--- 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + Y+V+E G L++ LETGRTHQ
Sbjct: 205 ---GKRAVTHYEVLERF--NGYTLIKCILETGRTHQ 235
>gi|411119450|ref|ZP_11391830.1| ribosomal large subunit pseudouridine synthase D [Oscillatoriales
cyanobacterium JSC-12]
gi|410711313|gb|EKQ68820.1| ribosomal large subunit pseudouridine synthase D [Oscillatoriales
cyanobacterium JSC-12]
Length = 322
Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 124/213 (58%), Gaps = 23/213 (10%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V GD++ I + +PL + E+IPLDI+YEDD +L++NKPA MVVHP+PG++ GTLVN
Sbjct: 59 VNQGDLIRVQIPDAEPLDIQPENIPLDILYEDDELLIINKPAGMVVHPSPGHSQGTLVNA 118
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC ++ E S I G RPGIVHRLDK T+G + VAK
Sbjct: 119 LLWHCR-----------------TTNGESTLSGIGGVQ-RPGIVHRLDKDTTGAICVAKT 160
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H HL +QF T R Y L G P SG I+ PI R P +R +MA +P K G
Sbjct: 161 DLAHLHLQQQFHDKTARRDYWGLVHGAPKAESGTIDAPIGRHPVDRQKMAIVP-EEKGG- 218
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V E L G L+ + LETGRTHQ
Sbjct: 219 -RRAVTHWQVKERL--GNYTLMNFELETGRTHQ 248
>gi|425454973|ref|ZP_18834698.1| putative enzyme [Microcystis aeruginosa PCC 9807]
gi|389804214|emb|CCI16935.1| putative enzyme [Microcystis aeruginosa PCC 9807]
Length = 308
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 127/214 (59%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL+ AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVAQGDRLKITIPDSQPLQLSAEAIELDILYEDEYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +V+AK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y++L GVP +G I++PI R +R +MA I K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYMALVHGVPKSETGTIDLPIGRHRGDRQKMAII-AVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + +++ E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQIKERL--GNYTLMEFRLETGRTHQ 237
>gi|425435653|ref|ZP_18816100.1| putative enzyme [Microcystis aeruginosa PCC 9432]
gi|425448767|ref|ZP_18828611.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|440753109|ref|ZP_20932312.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
TAIHU98]
gi|389679748|emb|CCH91466.1| putative enzyme [Microcystis aeruginosa PCC 9432]
gi|389769929|emb|CCI05423.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|440177602|gb|ELP56875.1| pseudouridine synthase, RluA family protein [Microcystis aeruginosa
TAIHU98]
Length = 308
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 127/214 (59%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVGQGDRLKITIPDSQPLELSAEAIELDILYEDEYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +V+AK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y++L GVP +G I++PI R ++R +MA I K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYMALVHGVPKSETGTIDLPIGRHRSDRQKMAII-AVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQVKERL--GNYTLMEFRLETGRTHQ 237
>gi|393724529|ref|ZP_10344456.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
PAMC 26605]
Length = 322
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 130/216 (60%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S G + + I E P A+DI L++V+EDD+++V++K A +VVHPA GNA GTL
Sbjct: 64 SSKAMAGGLYSVAIPEATPSTNAAQDIALNVVFEDDHLIVIDKQAGLVVHPAAGNADGTL 123
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC+ N S I G + RPGIVHR+DK TSGL+V
Sbjct: 124 VNALLHHCA------GNL----------------SGIGGVA-RPGIVHRIDKDTSGLMVA 160
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L+ QF H+I+R Y ++ SG P+ ++G ++ P++R P+NR +MA +PG +
Sbjct: 161 AKTDRAHEGLARQFHDHSIDRRYKAIVSGRPAPTAGSVDAPLARSPSNRKKMAIVPGGKR 220
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y +E + GG ALVE RLETGRTHQ
Sbjct: 221 ------AVTHYTTLERVNGG--ALVECRLETGRTHQ 248
>gi|431794675|ref|YP_007221580.1| ribosomal large subunit pseudouridine synthase D
[Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784901|gb|AGA70184.1| ribosomal large subunit pseudouridine synthase D
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 332
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 127/216 (58%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD + I Q L+ +AE+IPLDIVYED+++LVVNKP MVVHPAPG TGTL
Sbjct: 78 NYKVRSGDKITVVIPPPQELKVDAENIPLDIVYEDEDLLVVNKPQGMVVHPAPGAWTGTL 137
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC S I+G +RPGIVHR+DK TSGLLVV
Sbjct: 138 VNALLHHC-----------------------RNLSGINGV-LRPGIVHRIDKDTSGLLVV 173
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L+EQ K H++ R Y ++ GV + SG I+ PI RDP +R +MA
Sbjct: 174 AKSDLAHHGLAEQVKAHSMTRQYQAIVHGVLFEPSGTIDAPIGRDPVDRKKMAV-----A 228
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + Y+V+E ++ RLETGRTHQ
Sbjct: 229 FRNFKEAITHYEVLERFF--DFTYIQARLETGRTHQ 262
>gi|147678153|ref|YP_001212368.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
gi|146274250|dbj|BAF59999.1| pseudouridylate synthase [Pelotomaculum thermopropionicum SI]
Length = 312
Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK GD+V + E + L + E IPL++ YED +V+V+NKP MVVHPA GN +GTL
Sbjct: 53 SYRVKPGDVVVLQVPEPEGLEIKKEPIPLEVYYEDADVIVINKPRGMVVHPADGNYSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HCS D+S I+G +RPGIVHRLDK TSGL++V
Sbjct: 113 VNALLYHCS----------------DLS-------GINGV-MRPGIVHRLDKDTSGLIMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K I R Y++L G+ + SG ++ PI RDP +R +MA +
Sbjct: 149 AKNDTAHLSLARQLKERQITRRYLALVHGLLKEQSGMVDAPIGRDPRDRKKMAVL----- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A+ A +RY+V+E G +E LETGRTHQ
Sbjct: 204 QKNAKQAVTRYRVLERFK--GYTYIELMLETGRTHQ 237
>gi|17228018|ref|NP_484566.1| hypothetical protein alr0522 [Nostoc sp. PCC 7120]
gi|9957317|gb|AAG09315.1| hypothetical protein [Nostoc sp. PCC 7120]
gi|17129867|dbj|BAB72480.1| alr0522 [Nostoc sp. PCC 7120]
Length = 312
Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 126/215 (58%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
N+K GD + + E QPL +AEDIPLDI+YEDD +L++NKPA +VVHPAPG++ GTLVN
Sbjct: 54 NLKVGDRITLEVPEAQPLEIQAEDIPLDILYEDDQLLILNKPAGLVVHPAPGHSHGTLVN 113
Query: 88 GILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+L HC LP + G RPGIVHRLDK T+G + +A
Sbjct: 114 ALLAHCPDLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIA 148
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + ++ H+ Q + T R Y+ + G P +SG++++PI R P +R +MA +P
Sbjct: 149 KTDIAYKHIQAQLQAKTARREYLGVVYGAPKTASGKVDLPIGRHPQDRKKMAVVPIEEG- 207
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L G L+ ++LETGRTHQ
Sbjct: 208 --GRSAITHWQIQERL--GNFTLIHFQLETGRTHQ 238
>gi|354565422|ref|ZP_08984597.1| pseudouridine synthase, RluA family [Fischerella sp. JSC-11]
gi|353549381|gb|EHC18823.1| pseudouridine synthase, RluA family [Fischerella sp. JSC-11]
Length = 315
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 134/237 (56%), Gaps = 35/237 (14%)
Query: 6 LEFNQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 65
+E QV + + K SV K GD + I +PL A+DIPLDI+YEDD +L+
Sbjct: 35 IEQGQVQLNGKICTSKKTSV----KQGDRICLEIPPAEPLELTAQDIPLDILYEDDQLLI 90
Query: 66 VNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISG 124
+NKPA +VVHPAPG+ GTLVN IL HC +LP + G
Sbjct: 91 LNKPAGLVVHPAPGHPDGTLVNAILAHCPNLPGI-------------------------G 125
Query: 125 ASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE 184
RPGIVHRLDK T+G + +AK E +H HL Q K T +R Y+ + GVP +G I+
Sbjct: 126 GVQRPGIVHRLDKDTTGAIAIAKTEFAHQHLQAQLKAKTAQREYLGVVYGVPKTENGTID 185
Query: 185 VPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+PI R P +R +MA + S + G R A + ++++E L G L+ ++LETGRTHQ
Sbjct: 186 LPIGRHPVDRKKMAVV--SPEKG-GRPATTHWRILERL--GNYTLMHFQLETGRTHQ 237
>gi|307243485|ref|ZP_07525636.1| pseudouridine synthase, RluA family [Peptostreptococcus stomatis
DSM 17678]
gi|306493129|gb|EFM65131.1| pseudouridine synthase, RluA family [Peptostreptococcus stomatis
DSM 17678]
Length = 310
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 129/216 (59%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ ++ GD + + E + L A+DI LDIVYEDD++L+VNKP MVVHPAPGN GTL
Sbjct: 57 SYKLEEGDRMEIAMPEPEVLEVLAQDIDLDIVYEDDDLLIVNKPQGMVVHPAPGNPDGTL 116
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN I++HC ++ SSI+G IRPGIVHR+DK TSGLLVV
Sbjct: 117 VNAIMYHC----------------------KDKLSSINGV-IRPGIVHRIDKNTSGLLVV 153
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ SH L++QFKLH+I R Y + G + I+ I R+P +R++MA +
Sbjct: 154 AKNNASHQGLADQFKLHSITREYEMVCIGGVNWDQMTIDKNIGRNPKDRLKMAVLDTG-- 211
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + + VIE L G ++ +LETGRTHQ
Sbjct: 212 ---GRHAVTHFTVIEHLE--GYTYMKAKLETGRTHQ 242
>gi|423073746|ref|ZP_17062483.1| pseudouridine synthase, RluA family [Desulfitobacterium hafniense
DP7]
gi|361855368|gb|EHL07344.1| pseudouridine synthase, RluA family [Desulfitobacterium hafniense
DP7]
Length = 334
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 130/216 (60%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + I + L+ EAE+IPL+I+YED++VLVVNKP MVVHPAPG T T+
Sbjct: 79 NYKVRAMDQITVVIPPPRELKVEAENIPLEILYEDEDVLVVNKPQGMVVHPAPGAWTKTM 138
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC S I+G +RPGIVHR+DK TSGLLVV
Sbjct: 139 VNALLYHC-----------------------RNLSGINGV-LRPGIVHRIDKDTSGLLVV 174
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ K H++ R Y+++ GV + SG ++ P+ RDP +R +MA +
Sbjct: 175 AKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVDAPVGRDPADRKKMAVV----- 229
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A+ A + Y+V+E L+E RLETGRTHQ
Sbjct: 230 FQNAKEAVTHYEVLERFR--DFTLLEARLETGRTHQ 263
>gi|28211276|ref|NP_782220.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
gi|28203716|gb|AAO36157.1| ribosomal large subunit pseudouridine synthase D [Clostridium
tetani E88]
Length = 307
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 131/218 (60%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
V++ VK GD+V + + + + E E++ L+I+YED++++V+NKP MVVHP GN G
Sbjct: 52 KVNYKVKCGDIVKVLLPKEEGIYLEKENMDLNILYEDEDIIVINKPQGMVVHPGVGNTKG 111
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVNG+L HC +L++ N E RPGIVHR+DK TSG+L
Sbjct: 112 TLVNGLLAHCK--SLSNINGEE----------------------RPGIVHRIDKDTSGIL 147
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
V+AK +H HL+ Q K H++ RVY++LT GV + G I+ + R+P++RI+ A +
Sbjct: 148 VIAKTNRAHEHLANQLKDHSMLRVYMALTEGVIKEDMGTIDKDLGRNPSDRIKFAVVD-- 205
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + YKVI ++L+E RLETGRTHQ
Sbjct: 206 ----EGKRAVTHYKVIN--RYNNNSLIECRLETGRTHQ 237
>gi|254495420|ref|ZP_05108344.1| ribosomal large subunit pseudouridine synthase D [Polaribacter sp.
MED152]
gi|85819775|gb|EAQ40932.1| ribosomal large subunit pseudouridine synthase D [Polaribacter sp.
MED152]
Length = 345
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 132/221 (59%), Gaps = 39/221 (17%)
Query: 26 SHNVKGGDMVNCTISELQPLRAE----AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
+H VK D+V ++ P AE AEDIPLDI+YEDD V+VVNKPA MVVHP GN
Sbjct: 66 NHKVKPKDVVRVVLA-YPP--AENLLVAEDIPLDIIYEDDAVIVVNKPAGMVVHPGHGNY 122
Query: 82 TGTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
+GTLVNG++HH +LPT +SN+ RPG+VHR+DK TS
Sbjct: 123 SGTLVNGLIHHIENLPT--NSNE------------------------RPGLVHRIDKDTS 156
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLLVVAK E + AHLS+QF T ER+Y +L G + GRIE I R NR++MA
Sbjct: 157 GLLVVAKTEFAMAHLSKQFFDRTTERLYYALVWGNIEEDEGRIEGNIGRSLKNRLQMAVF 216
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
P + +HA + +KV+E L LV+ +LETGRTHQ
Sbjct: 217 PDGD---FGKHAVTHFKVLERLT--YVTLVQCKLETGRTHQ 252
>gi|119513315|ref|ZP_01632353.1| Pseudouridine synthase, RluD [Nodularia spumigena CCY9414]
gi|119462022|gb|EAW43021.1| Pseudouridine synthase, RluD [Nodularia spumigena CCY9414]
Length = 309
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 129/215 (60%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
VK GD + I E+QPL+ +A+DIPLDI+YEDD++L++NKPA +VVHPAPG+ GTLVN
Sbjct: 53 TVKAGDRITLEIPEVQPLQVQAQDIPLDILYEDDHLLILNKPAGLVVHPAPGHPDGTLVN 112
Query: 88 GILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+L HC +LP + G RPGIVHRLDK T+G + +A
Sbjct: 113 ALLAHCPNLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIA 147
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + ++ L Q + T R Y+ + G P +G+I+ PI R P +R +MA +P K
Sbjct: 148 KTDIAYHSLQAQLQAKTARREYLGVVYGAPKTENGKIDEPIGRHPQDRKKMAVVP-IEKG 206
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G R+A + ++++E L G LV ++LETGRTHQ
Sbjct: 207 G--RNAVTHWQILERL--GNQTLVLFQLETGRTHQ 237
>gi|254415358|ref|ZP_05029119.1| pseudouridine synthase, RluA family [Coleofasciculus chthonoplastes
PCC 7420]
gi|196177833|gb|EDX72836.1| pseudouridine synthase, RluA family [Coleofasciculus chthonoplastes
PCC 7420]
Length = 330
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 124/213 (58%), Gaps = 29/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
++ GD ++ TI + +PL + E IPLDI+YEDD +L+VNKPA++VVHPAPG+ GTLVN
Sbjct: 54 IQPGDSIHLTIPDAKPLDLKPEAIPLDILYEDDQILIVNKPANLVVHPAPGHENGTLVNA 113
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC P LA G RPGIVHRLDK T+G + +AK
Sbjct: 114 LLAHC--PNLAG----------------------IGGVQRPGIVHRLDKDTTGAIAIAKT 149
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+H+H HL Q K T R Y+ + G P+ +G I PI R P++R +MA +P
Sbjct: 150 DHAHHHLQAQLKAKTARRDYLGVVYGSPATETGTINFPIGRHPSDRKKMAVVPLEKG--- 206
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L G L+ ++LETGRTHQ
Sbjct: 207 GRSAITHWQIKERL--GNYTLIHFQLETGRTHQ 237
>gi|425470428|ref|ZP_18849298.1| putative enzyme [Microcystis aeruginosa PCC 9701]
gi|389883962|emb|CCI35700.1| putative enzyme [Microcystis aeruginosa PCC 9701]
Length = 308
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 127/214 (59%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVGQGDHLKITIPDSQPLELTAEAIELDILYEDEYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +V+AK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y++L GVP +G I++PI R ++R +MA I K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYMALVHGVPKSETGTIDLPIGRHRSDRQKMAII-AVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQVKERL--GNYTLMEFRLETGRTHQ 237
>gi|187932847|ref|YP_001886621.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
gi|187721000|gb|ACD22221.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum B str. Eklund 17B]
Length = 302
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 131/222 (59%), Gaps = 32/222 (14%)
Query: 21 DKL-SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
DKL ++ +K D + T+ E + L+ E+EDI LDI+YED +V+VVNK MVVHPAPG
Sbjct: 46 DKLIKNNYKLKACDEIVITMPEAETLKVESEDIDLDILYEDKDVIVVNKEQGMVVHPAPG 105
Query: 80 NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 139
N GTLVN +L HC+ D+ SSI+G IRPGIVHR+DK T
Sbjct: 106 NYNGTLVNALLFHCT----------------DL-------SSINGV-IRPGIVHRIDKDT 141
Query: 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAA 199
SG+LV+AK++ SH L+ Q K H++ R Y +L G SG I+ P+ RD NR+++A
Sbjct: 142 SGVLVIAKNDESHNKLAAQLKDHSMNREYYALVEGRFKNDSGIIDKPLGRDKKNRLKIAI 201
Query: 200 IPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y+V+E G L++ +LETGRTHQ
Sbjct: 202 TE------DGRRAITHYEVLE-RYDTGCTLIKCKLETGRTHQ 236
>gi|381182085|ref|ZP_09890907.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Listeriaceae bacterium TTU M1-001]
gi|380318001|gb|EIA21298.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
protein [Listeriaceae bacterium TTU M1-001]
Length = 306
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 133/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ + + ++ V+ GD + I E+ L AEAEDIPLDI YED +VLVVNKP MVVH
Sbjct: 41 ILVNNESVKANYKVQTGDTITYQIREVTELVAEAEDIPLDIYYEDKDVLVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ +GTLVN +L+HC +D+ S I+G IRPGIVHR+
Sbjct: 101 PAAGHMSGTLVNALLYHC----------------QDL-------SGINGV-IRPGIVHRI 136
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK++ +H LS Q K T +R+Y++L G G IE PI R +R
Sbjct: 137 DKDTSGLLMVAKNDAAHVSLSSQLKDKTSDRIYLALVHGDIKHQKGTIEAPIGRAKEDRK 196
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA + + A + ++V+E G L++ +L+TGRTHQ
Sbjct: 197 KMAVV------ADGKEARTHFEVVERF--GDYTLIKCQLDTGRTHQ 234
>gi|298492053|ref|YP_003722230.1| RluA family pseudouridine synthase ['Nostoc azollae' 0708]
gi|298233971|gb|ADI65107.1| pseudouridine synthase, RluA family ['Nostoc azollae' 0708]
Length = 329
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 125/215 (58%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
NVK GD + I LQPL+ AEDIPLDI+YED+ +L++NKPA +VVHPAPG+ GTLVN
Sbjct: 73 NVKVGDRICVEIPSLQPLKLVAEDIPLDILYEDEQLLILNKPAGLVVHPAPGHLDGTLVN 132
Query: 88 GILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+L HC+ LP + G RPGIVHRLDK T+G + +A
Sbjct: 133 ALLAHCANLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIA 167
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + ++ HL Q + T R Y+ + GVP SG I +PISR P +R +MA +P
Sbjct: 168 KTDIAYQHLQAQLQAKTARREYLGVVYGVPKTESGIINLPISRHPQDRKKMAIVPTEQG- 226
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L+ L+ ++LETGRTHQ
Sbjct: 227 --GRTAITHWQIRERLS--NYTLIHFQLETGRTHQ 257
>gi|167037761|ref|YP_001665339.1| RluA family pseudouridine synthase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116174|ref|YP_004186333.1| RluA family pseudouridine synthase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166856595|gb|ABY95003.1| pseudouridine synthase, RluA family [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929265|gb|ADV79950.1| pseudouridine synthase, RluA family [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 305
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + S+ VK D V + E + + EDIPLDI+YEDD+++V+NKP MVVH
Sbjct: 44 VFVNGKTVKPSYKVKENDEVVLNVPEAEKIDVLPEDIPLDILYEDDDIIVINKPQGMVVH 103
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPGN +GTLVN +L+HC + S I+G +RPGIVHRL
Sbjct: 104 PAPGNYSGTLVNALLYHC-----------------------KNLSGINGI-LRPGIVHRL 139
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSG++VVAK++ +H LS Q K ++ + Y+++ GV G+IE PI R P +R
Sbjct: 140 DKDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKDEEGKIEAPIGRHPVDRK 199
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA I R+A + YKV+E + LVE ++TGRTHQ
Sbjct: 200 KMAVIE------DGRYALTLYKVLERFK--ENTLVEAVIKTGRTHQ 237
>gi|429765557|ref|ZP_19297842.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
gi|429186008|gb|EKY26971.1| pseudouridine synthase, RluA family [Clostridium celatum DSM 1785]
Length = 315
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 132/220 (60%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K+ ++ ++ D++ + E + L E + LDIVYED +V+++NK +VVHPAPGN
Sbjct: 60 KIKSNYKLRKNDVITVKLKEPEELNVLPEKMDLDIVYEDSDVIIINKSKGVVVHPAPGNY 119
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
TGTLVNGILHHC+ D+ S I+G IRPGIVHR+DK TSG
Sbjct: 120 TGTLVNGILHHCT----------------DL-------SGINGV-IRPGIVHRIDKDTSG 155
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
+LV+AK++ +H L+ QFK H+I+R Y +L G S G ++ PISRD +RI+MA
Sbjct: 156 ILVIAKNDDAHNSLAVQFKDHSIKREYYALVEGRFSTLEGTVDKPISRDKKDRIKMAI-- 213
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + Y+V+E G S L++ LETGRTHQ
Sbjct: 214 ----NSDGKRAVTHYEVLEQYDKGVS-LIKCTLETGRTHQ 248
>gi|389815966|ref|ZP_10207203.1| RNA pseudouridine synthase ylyB [Planococcus antarcticus DSM 14505]
gi|388465460|gb|EIM07777.1| RNA pseudouridine synthase ylyB [Planococcus antarcticus DSM 14505]
Length = 303
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 130/216 (60%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D++ T EL+ L ED+ L+IVYED++VLVVNKP MVVHPAPG+A GTL
Sbjct: 52 NYKVRLQDIIIVTPPELEELDVVPEDLNLEIVYEDEDVLVVNKPKGMVVHPAPGHADGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 112 VNGLMHHCT----------------DL-------SGINGV-VRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L +Q T+ R Y++L G G I+ PI+RDP R MA +
Sbjct: 148 AKNDVAHTSLVDQLVKKTVTRKYVALVHGHIPHDKGTIQAPIARDPKERQNMAIV----- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +HA + ++V+E G LVE RLETGRTHQ
Sbjct: 203 -DKGKHAVTHFRVLERF--GDFTLVECRLETGRTHQ 235
>gi|89895611|ref|YP_519098.1| hypothetical protein DSY2865 [Desulfitobacterium hafniense Y51]
gi|89335059|dbj|BAE84654.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 300
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + I + L+ EAE+IPL+++YED++VLVVNKP MVVHPAPG T T+
Sbjct: 45 NYKVRAMDQITVVIPPPRELKVEAENIPLEVLYEDEDVLVVNKPQGMVVHPAPGAWTKTM 104
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC S I+G +RPGIVHR+DK TSGLLVV
Sbjct: 105 VNALLYHC-----------------------RNLSGINGV-LRPGIVHRIDKDTSGLLVV 140
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ K H++ R Y+++ GV + SG ++ P+ RDP +R +MA +
Sbjct: 141 AKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVDAPVGRDPADRKKMAVV----- 195
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A+ A + Y+V+E L+E RLETGRTHQ
Sbjct: 196 FQNAKEAVTHYEVLERFR--DFTLLEARLETGRTHQ 229
>gi|399888864|ref|ZP_10774741.1| pseudouridylate synthase [Clostridium arbusti SL206]
Length = 305
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 133/221 (60%), Gaps = 33/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
DK S ++ +K D ++ I E + L EAE I +DI+YED +V+VV+K MVVHPAPGN
Sbjct: 48 DKKS-NYKLKIDDEISFAIPENRELDVEAEKIDIDILYEDSDVIVVDKQQGMVVHPAPGN 106
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TGTLVN +L+HC +D+S I+G + RPGIVHR+DK TS
Sbjct: 107 YTGTLVNALLYHC----------------KDLS-------GINGIN-RPGIVHRIDKDTS 142
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
G+LVVAK++ SH L+EQ K H++ R+Y++L G+ G I+ P+ R P RI+++ +
Sbjct: 143 GVLVVAKNDKSHKFLAEQLKEHSMNRIYLALVEGIIKVDEGTIDAPLGRHPVERIKISIV 202
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + YKVIE + LVE +LETGRTHQ
Sbjct: 203 K------NGREAVTHYKVIERFK--NNTLVECKLETGRTHQ 235
>gi|425462108|ref|ZP_18841582.1| putative enzyme [Microcystis aeruginosa PCC 9808]
gi|389824925|emb|CCI25716.1| putative enzyme [Microcystis aeruginosa PCC 9808]
Length = 308
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 127/214 (59%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + TI + QPL AE I LDI+YED+ ++++NKPA +VVHPAPG+ +GTLVN
Sbjct: 53 KVGQGDRLKITIPDSQPLELTAEAIELDILYEDEYLIIINKPADLVVHPAPGHESGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC P LA G RPGIVHRLDK T+G +V+AK
Sbjct: 113 ALLHHC--PNLAG----------------------IGGIQRPGIVHRLDKDTTGAIVIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y++L GVP +G I++PI R ++R +M AI K G
Sbjct: 149 TDQAHQHLQAQLKTKTARREYMALVHGVPKSETGTIDLPIGRHRSDRQKM-AIMTVEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V E L G L+E+RLETGRTHQ
Sbjct: 208 --RNAVTHWQVKERL--GNYTLMEFRLETGRTHQ 237
>gi|332185831|ref|ZP_08387578.1| pseudouridine synthase, RluA family protein [Sphingomonas sp. S17]
gi|332014189|gb|EGI56247.1| pseudouridine synthase, RluA family protein [Sphingomonas sp. S17]
Length = 315
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 123/210 (58%), Gaps = 31/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD+ + P EA+DIPL I YED++++V++KPA +VVHPA GN GTLVN +LH
Sbjct: 63 GDLFQVAVPAPTPAHNEAQDIPLVIAYEDEHLIVIDKPAGLVVHPAAGNLDGTLVNALLH 122
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
+C S S G RPGIVHR+DK TSGL+V AK + +
Sbjct: 123 YCG-----------------------GSLSGIGGVARPGIVHRIDKDTSGLMVAAKTDRT 159
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L++QF H+I+R Y ++T G+P + G ++ P++R P NR ++A + G +
Sbjct: 160 HEGLAKQFAAHSIDRRYRAITGGIPRPADGTVDAPLARSPQNRKKVAIVQGGKR------ 213
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+ IE L +ALVE RLETGRTHQ
Sbjct: 214 AVTHYRTIEKL--NNAALVECRLETGRTHQ 241
>gi|381166654|ref|ZP_09875868.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Phaeospirillum molischianum DSM 120]
gi|380684227|emb|CCG40680.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Phaeospirillum molischianum DSM 120]
Length = 347
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 123/219 (56%), Gaps = 28/219 (12%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L SH VK G ++ P EA+DI L +V+ED++++V++KP +VVHPAPGN
Sbjct: 76 LDPSHRVKPGQSCRVSVPPDAPAIPEAQDIALTVVHEDEDLIVIDKPPGLVVHPAPGNLD 135
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +L HC E + I G RPGIVHRLDK TSGL
Sbjct: 136 FTLVNALLAHCG----------------------ESLAGIGGVR-RPGIVHRLDKDTSGL 172
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LV AK + +H LSEQF H++ER Y +L GVPS S G IE I R+P +R MA + G
Sbjct: 173 LVAAKTDAAHRGLSEQFAAHSLERAYRALVWGVPSPSKGEIEGNIGRNPRDRKTMAIVSG 232
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A +RY V++ GG + VE RL TGRTHQ
Sbjct: 233 GGK-----RALTRYHVLQTYLGGCVSSVECRLATGRTHQ 266
>gi|334340921|ref|YP_004545901.1| RluA family pseudouridine synthase [Desulfotomaculum ruminis DSM
2154]
gi|334092275|gb|AEG60615.1| pseudouridine synthase, RluA family [Desulfotomaculum ruminis DSM
2154]
Length = 309
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 126/216 (58%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD V + + LR E E IPLDI YED +V+VVNK MVVHPA GN +GTL
Sbjct: 52 NYKLRAGDRVQLEVPPAEELRVEPEKIPLDIYYEDADVVVVNKVRGMVVHPAEGNHSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC D+S I+G +RPGIVHRLDK TSGL++V
Sbjct: 112 VNALLYHC----------------RDLS-------GINGI-LRPGIVHRLDKDTSGLIMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T+ R Y +L GV + G I+ PI RDP R RMA + ++K
Sbjct: 148 AKNDHAHQCLTQQLKDRTVTRRYTALAHGVIKEEKGTIDAPIGRDPRERQRMAVVEKNSK 207
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+V+E L E RLETGRTHQ
Sbjct: 208 -----SAVTHYRVLERFQ--YYTLAECRLETGRTHQ 236
>gi|296133340|ref|YP_003640587.1| RluA family pseudouridine synthase [Thermincola potens JR]
gi|296031918|gb|ADG82686.1| pseudouridine synthase, RluA family [Thermincola potens JR]
Length = 321
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 132/220 (60%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
++ ++ +K G++V I + L AE IPL+I+YED +V+V+NKP MVVHPAPGN
Sbjct: 66 RVKANYKLKAGELVRVEIPYTEELEVSAEPIPLEILYEDRDVIVINKPQGMVVHPAPGNY 125
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
+GTLVN +L HC +D+ S I+G +RPGIVHRLDK TSG
Sbjct: 126 SGTLVNALLWHC----------------KDL-------SGINGV-MRPGIVHRLDKDTSG 161
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
+++ AK++ +HA L++Q K T+ R Y++L GV + +G IE PI RDP +R +MA
Sbjct: 162 VIMAAKNDETHASLAKQIKDRTVTRRYLALIHGVIPEPAGIIEAPIGRDPKDRKKMAVTT 221
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++K A + YKV+E VE +LETGRTHQ
Sbjct: 222 KNSK-----PAVTHYKVLERF--NKYTFVECKLETGRTHQ 254
>gi|118443119|ref|YP_878025.1| ribosomal large subunit pseudouridine synthase D [Clostridium novyi
NT]
gi|118133575|gb|ABK60619.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Clostridium novyi NT]
Length = 304
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K GD V TI E + + E EDI L+I+YED++V+V++KP MVVHP GN +GTL
Sbjct: 52 NYKLKTGDNVEVTIKEDETINIEPEDIKLNILYEDEDVIVIDKPQGMVVHPGNGNYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+HC + SSI+G +RPGIVHR+DK TSG+LVV
Sbjct: 112 VNGLLYHC-----------------------DSLSSING-DVRPGIVHRIDKDTSGVLVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++++H LSEQ K H+++R Y++L G+ G I+ P+ R+P +RI+ A +
Sbjct: 148 AKNDNAHIILSEQLKEHSMKREYVALVEGIIKDDEGTIDEPLGRNPKDRIKRAVVR---- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + Y+VI + LV+ LETGRTHQ
Sbjct: 204 --NGKNAITHYEVIRRF--NKNTLVKCILETGRTHQ 235
>gi|424780438|ref|ZP_18207311.1| Ribosomal large subunit pseudouridine synthase D [Catellicoccus
marimammalium M35/04/3]
gi|422842840|gb|EKU27287.1| Ribosomal large subunit pseudouridine synthase D [Catellicoccus
marimammalium M35/04/3]
Length = 301
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD ++ T E +PL AE ++IPLDI+YED++V+V+NKP MVVHP+PG+ GTL
Sbjct: 50 NYKVATGDQISFTPQEDKPLTAEPQNIPLDIIYEDEDVIVINKPQGMVVHPSPGHPDGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+H L S + +IRPGIVHR+DK TSGLL+V
Sbjct: 110 VNGLLYHTQL------------------------SEMEEGTIRPGIVHRIDKDTSGLLMV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ SH L++Q T R Y+++ G + G+I+ PI RDP +R + A I
Sbjct: 146 AKNNQSHESLAKQLSEKTSHRRYLAIVHGDIDHAKGKIDAPIGRDPKDRKKQAVI----- 200
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R A + ++V+E G L+ +LETGRTHQ
Sbjct: 201 -KEGRPAVTHFEVLERF--GRYTLIACQLETGRTHQ 233
>gi|188590369|ref|YP_001921578.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
gi|188500650|gb|ACD53786.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum E3 str. Alaska E43]
Length = 302
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D + T+ E + L+ E+EDI LDI+YED +V+VVNK MVVHPAPGN GTL
Sbjct: 52 NYKLKACDEIVITMPEAEILKVESEDIDLDILYEDKDVIVVNKEQGMVVHPAPGNYNGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC+ D+ SSI+G IRPGIVHR+DK TSG+LV+
Sbjct: 112 VNALLFHCT----------------DL-------SSINGV-IRPGIVHRIDKDTSGVLVI 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH L+ Q K H++ R Y +L G SG I+ P+ RD NR+++A
Sbjct: 148 AKNDESHNKLAAQLKDHSMNREYYALVEGRFKNDSGVIDKPLGRDKKNRLKIAITE---- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y+V+E G L++ +LETGRTHQ
Sbjct: 204 --DGRRAITHYEVLE-RYDTGCTLIKCKLETGRTHQ 236
>gi|428305379|ref|YP_007142204.1| ribosomal large subunit pseudouridine synthase D [Crinalium
epipsammum PCC 9333]
gi|428246914|gb|AFZ12694.1| ribosomal large subunit pseudouridine synthase D [Crinalium
epipsammum PCC 9333]
Length = 331
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 125/214 (58%), Gaps = 31/214 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
VK GD ++ TI E +P + +AE+IPLDI+YEDD++L+VNKPA +VVHPA G+ TGTLVN
Sbjct: 79 KVKLGDRIHVTIPEAEPPKTQAENIPLDILYEDDSLLIVNKPAGLVVHPAAGHETGTLVN 138
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HC L S I G RPGIVHRLDK T+G + +AK
Sbjct: 139 ALLAHCPL------------------------SEIGGVQ-RPGIVHRLDKDTTGAIAIAK 173
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y+ + G P SG ++ PI R P +R +MA + ++
Sbjct: 174 TDQAHQHLQAQLKAKTACREYLGVVYGSPKTDSGSVDAPIGRHPVDRKKMAVVAEAS--- 230
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V E L G L+ ++LETGRTHQ
Sbjct: 231 -GRPAVTHWRVKERL--GNYTLLHFQLETGRTHQ 261
>gi|434395257|ref|YP_007130204.1| ribosomal large subunit pseudouridine synthase D [Gloeocapsa sp.
PCC 7428]
gi|428267098|gb|AFZ33044.1| ribosomal large subunit pseudouridine synthase D [Gloeocapsa sp.
PCC 7428]
Length = 309
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+K GD + I + QPL + EDIPLDI+YEDD++L++NKPA +VVHPAPG+A GTLVN
Sbjct: 52 TIKPGDRITVEIPDAQPLDLQPEDIPLDILYEDDSLLIINKPAGLVVHPAPGHAGGTLVN 111
Query: 88 GILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+L HC +LP + G RPGIVHRLDK T+G + +A
Sbjct: 112 ALLAHCPNLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIA 146
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + + HL Q K T R Y+ + GVP SG ++ PI R P +R +MA + S +
Sbjct: 147 KTDFAQQHLQAQLKAKTARREYLGVVYGVPKSESGTVDFPIGRHPVDRKKMAVV--SVEK 204
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G R A + ++ +E L G L+ ++LETGRTHQ
Sbjct: 205 G-GRSAVTHWQTLERL--GNYTLMHFQLETGRTHQ 236
>gi|256752464|ref|ZP_05493322.1| pseudouridine synthase, RluA family [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748666|gb|EEU61712.1| pseudouridine synthase, RluA family [Thermoanaerobacter ethanolicus
CCSD1]
Length = 305
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + S+ VK D V I E + + E+IPLDI+YEDD+++V+NKP MVVH
Sbjct: 44 VFVNGKTVKPSYKVKENDEVVVNIPEAEKIDVLPENIPLDILYEDDDIIVINKPQGMVVH 103
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPGN +GTLVN +L+HC + S I+G +RPGIVHRL
Sbjct: 104 PAPGNYSGTLVNALLYHC-----------------------KNLSGINGI-LRPGIVHRL 139
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSG++VVAK++ +H LS Q K ++ + Y+++ GV G+IE PI R P +R
Sbjct: 140 DKDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKDEEGKIEAPIGRHPVDRK 199
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA I R+A + YKV+E + LVE ++TGRTHQ
Sbjct: 200 KMAVIE------DGRYALTLYKVLERFK--ENTLVEAVIKTGRTHQ 237
>gi|167040454|ref|YP_001663439.1| RluA family pseudouridine synthase [Thermoanaerobacter sp. X514]
gi|300914505|ref|ZP_07131821.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X561]
gi|307724259|ref|YP_003904010.1| RluA family pseudouridine synthase [Thermoanaerobacter sp. X513]
gi|166854694|gb|ABY93103.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X514]
gi|300889440|gb|EFK84586.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X561]
gi|307581320|gb|ADN54719.1| pseudouridine synthase, RluA family [Thermoanaerobacter sp. X513]
Length = 305
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + S+ VK D V I E + + E+IPLDI+YEDD+++V+NKP MVVH
Sbjct: 44 VFVNGKTVKPSYKVKENDEVVVNIPEAEKIDVLPENIPLDILYEDDDIIVINKPQGMVVH 103
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPGN +GTLVN +L+HC + S I+G +RPGIVHRL
Sbjct: 104 PAPGNYSGTLVNALLYHC-----------------------KNLSGINGI-LRPGIVHRL 139
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSG++VVAK++ +H LS Q K ++ + Y+++ GV G+IE PI R P +R
Sbjct: 140 DKDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKDEEGKIEAPIGRHPVDRK 199
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA I R+A + YKV+E + LVE ++TGRTHQ
Sbjct: 200 KMAVIE------DGRYALTLYKVLERFK--ENTLVEAVIKTGRTHQ 237
>gi|289578538|ref|YP_003477165.1| pseudouridine synthase [Thermoanaerobacter italicus Ab9]
gi|289528251|gb|ADD02603.1| pseudouridine synthase, RluA family [Thermoanaerobacter italicus
Ab9]
Length = 305
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + S+ VK D V I E + + E+IPLDI+YEDD+++V+NKP MVVH
Sbjct: 44 VFVNGKTVKPSYKVKENDEVVVNIPEAEKIDVLPENIPLDILYEDDDIIVINKPQGMVVH 103
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPGN +GTLVN +L+HC + S I+G +RPGIVHRL
Sbjct: 104 PAPGNYSGTLVNALLYHC-----------------------KNLSGINGI-LRPGIVHRL 139
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSG++VVAK++ +H LS Q K ++ + Y+++ GV G+IE PI R P +R
Sbjct: 140 DKDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKDEEGKIEAPIGRHPVDRK 199
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA I R+A + YKV+E + LVE ++TGRTHQ
Sbjct: 200 KMAVIE------DGRYALTLYKVLERFK--ENTLVEAVIKTGRTHQ 237
>gi|158335489|ref|YP_001516661.1| RluA family pseudouridine synthase [Acaryochloris marina MBIC11017]
gi|158305730|gb|ABW27347.1| pseudouridine synthase, RluA family [Acaryochloris marina
MBIC11017]
Length = 328
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 129/218 (59%), Gaps = 24/218 (11%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S + ++ GD V I QPL E E + L+I++EDD++L+VNKPA +VVHPAPG+ATG
Sbjct: 49 SKKYALQIGDQVEVHIPAPQPLALEPEPMDLEILFEDDHLLIVNKPAGLVVHPAPGHATG 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLV+G+L HC D + + S G RPGIVHRLDK T+G +
Sbjct: 109 TLVHGLLAHC-------------------QDGQGSTLSGIGGVERPGIVHRLDKDTTGAI 149
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+VAK +H HL Q T R Y+ L G PS +GR+E PI R ++RI+MA +P
Sbjct: 150 MVAKTNQAHQHLQAQIAAKTALREYVGLVYGRPSALTGRMEFPIGRHRSDRIKMAVVPEE 209
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + +++++ L G ALV++RLETGRTHQ
Sbjct: 210 QG---GKVAVTHWQILQPL--GNYALVKFRLETGRTHQ 242
>gi|219670033|ref|YP_002460468.1| pseudouridine synthase [Desulfitobacterium hafniense DCB-2]
gi|219540293|gb|ACL22032.1| pseudouridine synthase, RluA family [Desulfitobacterium hafniense
DCB-2]
Length = 334
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 129/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + I + L+ EAE+IPL+I+YED++VLVVNK MVVHPAPG T TL
Sbjct: 79 NYKVRAMDQIAVVIPPPRELKVEAENIPLEILYEDEDVLVVNKSQGMVVHPAPGAWTKTL 138
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC S I+G +RPGIVHR+DK TSGLLVV
Sbjct: 139 VNALLYHC-----------------------RNLSGINGV-LRPGIVHRIDKDTSGLLVV 174
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ K H++ R Y+++ GV + SG +E PI RDP +R +MA +
Sbjct: 175 AKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGTVEAPIGRDPADRKKMAVV----- 229
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A+ A + Y+V+E L+E RLETGRTHQ
Sbjct: 230 FQNAKEAVTHYEVLERFR--DFTLLEARLETGRTHQ 263
>gi|323141904|ref|ZP_08076765.1| pseudouridine synthase, RluA family [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413651|gb|EFY04509.1| pseudouridine synthase, RluA family [Phascolarctobacterium
succinatutens YIT 12067]
Length = 314
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 130/219 (59%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ ++ GD ++ T+ E QPL + E+IPLDI+YED++V+VVNK MVVHPA GN
Sbjct: 56 LKSNYKLRLGDEIDVTLPEPQPLDVQPENIPLDIIYEDEDVVVVNKARGMVVHPAAGNLN 115
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC + S I+G IRPGIVHRLDK TSG+
Sbjct: 116 GTLVNALLYHC-----------------------KNLSGINGV-IRPGIVHRLDKDTSGI 151
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
++ AK++ +H LS+Q + T +R Y+++ G SG IE I+RD N+R +MA +
Sbjct: 152 MICAKNDAAHLSLSQQIQAKTAQRTYLAVVRGNIKTDSGVIETLIARDKNDRKKMAVV-- 209
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K G R A + Y+V+E G +V RL TGRTHQ
Sbjct: 210 --KEG-GRDAVTEYEVLERF--GKYTIVRCRLRTGRTHQ 243
>gi|20807974|ref|NP_623145.1| pseudouridylate synthase [Thermoanaerobacter tengcongensis MB4]
gi|20516547|gb|AAM24749.1| Pseudouridylate synthase, 23S RNA-specific [Thermoanaerobacter
tengcongensis MB4]
Length = 309
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK D V I E + + E+IPLDI+YED++++V+NKP MVVHPAPGN +GTL
Sbjct: 54 SYKVKEDDEVIVNIKEAEKIEVVPENIPLDILYEDEDIIVINKPQGMVVHPAPGNYSGTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC + S I+G +RPGIVHRLDK TSG++VV
Sbjct: 114 VNALLYHC-----------------------KNLSGINGI-LRPGIVHRLDKDTSGVMVV 149
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K ++ + Y+++ GV + G+IE PI R P +R RMA +
Sbjct: 150 AKNDKAHMSLSNQIKERSVLKKYVAIVEGVIKEEEGKIEAPIGRHPVDRKRMAVVQ---- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + YKV+E + VE ++TGRTHQ
Sbjct: 206 --DGRYALTLYKVLERFK--NNTFVEATIKTGRTHQ 237
>gi|300854258|ref|YP_003779242.1| ribosomal large subunit pseudouridine synthase D [Clostridium
ljungdahlii DSM 13528]
gi|300434373|gb|ADK14140.1| ribosomal large subunit pseudouridine synthase D [Clostridium
ljungdahlii DSM 13528]
Length = 302
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 130/216 (60%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K GD + TI + L ++EDIPLDI+YED +V+VVNKP M+VHPAPG GTL
Sbjct: 52 NYKIKSGDNIEITIPDPVNLNIQSEDIPLDILYEDKDVIVVNKPQGMIVHPAPGVYEGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC D+ S I+G + RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLNHC----------------RDL-------SGINGVT-RPGIVHRIDKDTSGILVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+++SH L++Q K H++ R YI+L GV G ++ PI+R P ++I+MA
Sbjct: 148 AKNDNSHNKLAKQLKDHSMTREYIALVEGVVKLDEGTVDEPIARHPKDKIKMAVCV---- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + YKVI+ + L++ LETGRTHQ
Sbjct: 204 --NGKRAITHYKVIKRFK--NNTLIKCILETGRTHQ 235
>gi|407783254|ref|ZP_11130457.1| pseudouridylate synthase, 23S RNA-specific [Oceanibaculum indicum
P24]
gi|407202434|gb|EKE72425.1| pseudouridylate synthase, 23S RNA-specific [Oceanibaculum indicum
P24]
Length = 336
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 127/219 (57%), Gaps = 35/219 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
SH VK G+ T+ + +A+DIPL +VYEDD+++V++KPA MVVHPAPGN TL
Sbjct: 65 SHKVKEGECFAVTLPPPEAAEPDAQDIPLVVVYEDDDLIVIDKPAGMVVHPAPGNPDSTL 124
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + S I G RPGIVHR+DK TSGLLV
Sbjct: 125 VNALLAHCG----------------------DSLSGIGGVR-RPGIVHRIDKDTSGLLVA 161
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +HA L+EQF H+I+R Y++L GVP +G I I R +R +MA + K
Sbjct: 162 AKNDLAHAALTEQFAAHSIDRAYLALVWGVPVPPAGEIAGNIGRSNRDRKKMAVVGSGGK 221
Query: 206 HGQARHAASRYKVI---EILAGGGSALVEWRLETGRTHQ 241
HA +RY+ + ILA +LVE RLETGRTHQ
Sbjct: 222 -----HALTRYRTLGRHGILA----SLVECRLETGRTHQ 251
>gi|393201806|ref|YP_006463648.1| pseudouridylate synthase, 23S RNA-specific [Solibacillus silvestris
StLB046]
gi|406664680|ref|ZP_11072455.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
isronensis B3W22]
gi|327441137|dbj|BAK17502.1| pseudouridylate synthase, 23S RNA-specific [Solibacillus silvestris
StLB046]
gi|405387528|gb|EKB46952.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
isronensis B3W22]
Length = 300
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 130/219 (59%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ + VK GD++ T+ E++ L ED+ L+IVYED +VLVVNKP MVVHPAPG+AT
Sbjct: 48 VKAKYKVKQGDVIEVTVPEVEDLEIIPEDLNLEIVYEDADVLVVNKPRGMVVHPAPGHAT 107
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC +D+ S I+G + RPGIVHR+DK TSGL
Sbjct: 108 GTLVNGLMHHC----------------KDL-------SGINGVA-RPGIVHRIDKDTSGL 143
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q ++ R Y +L G + G I+ PI RD +R + A +
Sbjct: 144 LMVAKNDVAHESLVNQLVEKSVTRKYTALVHGHIAHEKGTIDAPIGRDQKDRQKQAVV-- 201
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +HA + ++VIE G LVE RLETGRTHQ
Sbjct: 202 ----DKGKHAVTHFQVIERF--GEFTLVECRLETGRTHQ 234
>gi|169827034|ref|YP_001697192.1| RNA pseudouridine synthase ylyB [Lysinibacillus sphaericus C3-41]
gi|168991522|gb|ACA39062.1| Hypothetical RNA pseudouridine synthase ylyB [Lysinibacillus
sphaericus C3-41]
Length = 303
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 135/233 (57%), Gaps = 32/233 (13%)
Query: 9 NQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 68
N +S + ++ D + + VK GD++ + E +PL AE++ LDIVYED +VLVVNK
Sbjct: 35 NWISDGNIKVNGDAVKAKYKVKAGDVIAIDVPEAEPLDVIAENLALDIVYEDADVLVVNK 94
Query: 69 PAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 128
P MVVHPAPG+ TGTLVNG+++ C +D+ S I+G +R
Sbjct: 95 PKGMVVHPAPGHMTGTLVNGLMYQC----------------KDL-------SGINGI-MR 130
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 188
PGIVHR+DK TSGLL+VAK++ +H L +Q T+ R YI+L G + G I+ PI
Sbjct: 131 PGIVHRIDKDTSGLLMVAKNDVAHESLVDQLVNKTVTRKYIALVHGHIAHDKGTIDAPIG 190
Query: 189 RDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RD +R + A + +HA + + V+E G LVE RLETGRTHQ
Sbjct: 191 RDQKDRQKQAIVD------NGKHAVTHFHVVERF--GDYTLVECRLETGRTHQ 235
>gi|307154024|ref|YP_003889408.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7822]
gi|306984252|gb|ADN16133.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7822]
Length = 305
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 123/214 (57%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD++ I ++PL + E+IPLD++YED+ ++++NKPA +VVHPAPG+ GTLVN
Sbjct: 52 KVQQGDLLYLFIPPVEPLNLQPEEIPLDVLYEDEQLIIINKPAGLVVHPAPGHEKGTLVN 111
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HCS LA G RPGIVHRLDK T+G LV+AK
Sbjct: 112 ALLSHCS--NLAGI----------------------GGVQRPGIVHRLDKDTTGALVIAK 147
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+++H HL Q K T R Y+ + GVP SG I +PI R P R +MA +P
Sbjct: 148 TDYAHQHLQAQLKAKTARREYLGVVYGVPKTGSGTINLPIGRHPIERKKMAVVPLEKG-- 205
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L G L+ +RLETGRTHQ
Sbjct: 206 -GRVAITHWEIRERL--GNYTLIHFRLETGRTHQ 236
>gi|372325255|ref|ZP_09519844.1| Ribosomal large subunit pseudouridine synthase D [Oenococcus
kitaharae DSM 17330]
gi|366984063|gb|EHN59462.1| Ribosomal large subunit pseudouridine synthase D [Oenococcus
kitaharae DSM 17330]
Length = 287
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ V D + T + +PL AE+IPLDIVYEDD++LVVNKPA MVVHP+ G+A TL
Sbjct: 36 KYQVNPDDKIQVTFPQSKPLSLTAENIPLDIVYEDDDLLVVNKPAGMVVHPSAGHADHTL 95
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L H L S+I+G RPGIVHR+DK TSGLL+V
Sbjct: 96 VNALLAHAPL------------------------STING-EFRPGIVHRIDKDTSGLLMV 130
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ +H LS Q KLH R Y+++ G S+ SG I PI RDP NR + A + G
Sbjct: 131 AKNNFAHEKLSAQLKLHKTGRKYLAIVHGRFSEKSGTINAPIGRDPKNRQKQAVVAG--- 187
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + + V+E AL++ LETGRTHQ
Sbjct: 188 ---GREAVTHFTVLEQF--DNFALIQAVLETGRTHQ 218
>gi|189423553|ref|YP_001950730.1| pseudouridine synthase [Geobacter lovleyi SZ]
gi|189419812|gb|ACD94210.1| pseudouridine synthase, RluA family [Geobacter lovleyi SZ]
Length = 326
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 134/226 (59%), Gaps = 31/226 (13%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ L+ K S + GG+ + I P AE IPLD++YED +++V+NK A M VH
Sbjct: 44 VLLTEGKPRSSMKLAGGEQITVEIPPPAPAVPLAEQIPLDVLYEDHDLIVINKSAGMTVH 103
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
P G +GTLVN +L HC+ D+S G IRPGIVHRL
Sbjct: 104 PGAGVDSGTLVNALLGHCT----------------DLSG--------IGGEIRPGIVHRL 139
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DKGTSG+LVVAK++ +H L+EQF H+I+R+Y +L G P++ +G++ I R P +R+
Sbjct: 140 DKGTSGVLVVAKNDIAHRGLAEQFAAHSIKRLYWALIYGSPNEDTGKVSNSIGRHPTDRL 199
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RM+ G KHG + A + ++V+E G ++LV+ RLETGRTHQ
Sbjct: 200 RMS---GKAKHG--KEATTNWRVLERF--GAASLVQLRLETGRTHQ 238
>gi|357041028|ref|ZP_09102810.1| pseudouridine synthase, RluA family [Desulfotomaculum gibsoniae DSM
7213]
gi|355355887|gb|EHG03690.1| pseudouridine synthase, RluA family [Desulfotomaculum gibsoniae DSM
7213]
Length = 312
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 136/227 (59%), Gaps = 31/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
A+ ++ + + ++ +K GD V + L+ E IPLDI YED +++VVNKP MVV
Sbjct: 42 AVTVNQEAVRANYRLKEGDTVAVVVPPPVELKVCPEPIPLDIFYEDKDIIVVNKPRGMVV 101
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPA GN +GTLVN +LHHC +D+S I+G +RPGIVHR
Sbjct: 102 HPAEGNYSGTLVNALLHHC----------------QDLS-------GINGV-LRPGIVHR 137
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+VAK++ +H HL+ Q K HT+ R Y++L GV + G ++ PI R P R
Sbjct: 138 IDKDTSGLLMVAKNDLAHEHLAGQLKEHTVRRGYLALVHGVLTSDLGVVDAPIGRHPRER 197
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA +N++G+A A + Y+V+ G L++ RLETGRTHQ
Sbjct: 198 QKMAV---TNRNGKA--AVTHYRVLN--RAGNYTLLQLRLETGRTHQ 237
>gi|160892655|ref|ZP_02073445.1| hypothetical protein CLOL250_00185 [Clostridium sp. L2-50]
gi|156865696|gb|EDO59127.1| pseudouridine synthase, RluA family [Clostridium sp. L2-50]
Length = 305
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 33/222 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K S + GD ++ TI + + E E+IPLDIVYED+++++VNKP MVVHPAPG+
Sbjct: 48 KAKPSLKIASGDRIDITIPSIASVEIEPENIPLDIVYEDEDIIIVNKPKGMVVHPAPGHY 107
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG--ASIRPGIVHRLDKGT 139
+GTLVNG+++H F S+SG +RPGIVHR+D T
Sbjct: 108 SGTLVNGLMYH-------------------------FKDSLSGINGELRPGIVHRIDMDT 142
Query: 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAA 199
+GLLVV K++ +H LSEQ +H+I R Y ++ ++ G +++PI R P +R +MA
Sbjct: 143 TGLLVVCKNDAAHNFLSEQLAVHSITRKYYAICFNYFTEDEGIVDLPIGRHPTDRKKMAV 202
Query: 200 IPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R+A + YKV++ L L+E +LETGRTHQ
Sbjct: 203 -----NYKNGRNAVTHYKVLKKLK-NNFCLIECQLETGRTHQ 238
>gi|376002440|ref|ZP_09780273.1| 23S rRNA pseudouridine synthase [Arthrospira sp. PCC 8005]
gi|375329180|emb|CCE16026.1| 23S rRNA pseudouridine synthase [Arthrospira sp. PCC 8005]
Length = 308
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 123/214 (57%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD + I PL +A +IPLDI+YED+ +L++NKPA +VVHPAPG+ TLVN
Sbjct: 55 TVQIGDRIQVEIPPAIPLELKATNIPLDILYEDEELLIINKPAGLVVHPAPGHENDTLVN 114
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HC E + I G RPGIVHRLDK T+G + +AK
Sbjct: 115 ALLAHC-----------------------ETLAGIGGVQ-RPGIVHRLDKDTTGAIAIAK 150
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+H+H HL Q + T R Y+ + GVP +SG I+ PI R P++R +MA +P +H
Sbjct: 151 TDHAHQHLQAQIQAKTARRQYLGIIYGVPKTTSGVIDQPIGRHPSDRKKMAIVP---QHQ 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV E L G L+E+ LETGRTHQ
Sbjct: 208 GGRSAITHWKVKERL--GNYTLIEFELETGRTHQ 239
>gi|254478536|ref|ZP_05091911.1| pseudouridine synthase, RluA family [Carboxydibrachium pacificum
DSM 12653]
gi|214035544|gb|EEB76243.1| pseudouridine synthase, RluA family [Carboxydibrachium pacificum
DSM 12653]
Length = 309
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK D V I E + + E+IPLDI+YED++++V+NKP MVVHPAPGN +GTL
Sbjct: 54 SYKVKEDDEVVVNIPEAEKIEVVPENIPLDILYEDEDIIVINKPQGMVVHPAPGNYSGTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC + S I+G +RPGIVHRLDK TSG++VV
Sbjct: 114 VNALLYHC-----------------------KNLSGINGI-LRPGIVHRLDKDTSGVMVV 149
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K ++ + Y+++ GV + G+IE PI R P +R RMA +
Sbjct: 150 AKNDKAHMSLSNQIKERSVLKKYVAIVEGVIKEEEGKIEAPIGRHPVDRKRMAVVQ---- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + YKV+E + VE ++TGRTHQ
Sbjct: 206 --DGRYALTLYKVLERFK--NNTFVEATIKTGRTHQ 237
>gi|86608591|ref|YP_477353.1| RluA family pseudouridine synthase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557133|gb|ABD02090.1| pseudouridine synthase, RluA family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 317
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 124/213 (58%), Gaps = 30/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
++ GD V I P + E IPLDI+YEDD++LV+NKP +VVHPAPG+A+GTLV+
Sbjct: 64 LQAGDEVEVRIPPATPTALQPEPIPLDILYEDDDLLVINKPRGLVVHPAPGHASGTLVHA 123
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC P L+ N E RPGIVHRLDK T+G LV+AK
Sbjct: 124 LLAHC--PRLSGINGEQ----------------------RPGIVHRLDKDTTGALVIAKH 159
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H HL Q + T R+Y+ + G P+QS G + PI R P +R +MA + GQ
Sbjct: 160 DQAHQHLQAQIQAKTARRLYLGVVFGRPAQSQGTVSAPIGRHPVDRQKMAVL----TPGQ 215
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+E L G L+++ LETGRTHQ
Sbjct: 216 GRVAVTHWQVLERL--GNYTLMQFELETGRTHQ 246
>gi|375006258|ref|YP_004975042.1| pseudouridine synthase [Azospirillum lipoferum 4B]
gi|357427516|emb|CBS90459.1| pseudouridine synthase [Azospirillum lipoferum 4B]
Length = 353
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 126/216 (58%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S VK G + + A+DIP+D+V+ED +VLV++KPA +VVHPA GN GTL
Sbjct: 81 SLRVKPGQTFEVEVPGAEAAEPVAQDIPIDVVFEDADVLVIDKPAGLVVHPAAGNPDGTL 140
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + S I G RPGIVHRLDK TSGL+VV
Sbjct: 141 VNALLAHCG----------------------DSLSGIGGVK-RPGIVHRLDKDTSGLMVV 177
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LSEQF T+ R Y++L GVP+ + GRIE I R +R +MA + G K
Sbjct: 178 AKNDRAHHGLSEQFSDRTLSRTYLALVWGVPNPTQGRIEGNIGRSSADRKKMAVVTGGGK 237
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HAA++Y+V++ G ++LVE LETGRTHQ
Sbjct: 238 -----HAATKYRVVKSF-GMAASLVECVLETGRTHQ 267
>gi|423084352|ref|ZP_17072857.1| pseudouridine synthase, RluA family [Clostridium difficile
002-P50-2011]
gi|423088048|ref|ZP_17076433.1| pseudouridine synthase, RluA family [Clostridium difficile
050-P50-2011]
gi|357542657|gb|EHJ24699.1| pseudouridine synthase, RluA family [Clostridium difficile
002-P50-2011]
gi|357543576|gb|EHJ25593.1| pseudouridine synthase, RluA family [Clostridium difficile
050-P50-2011]
Length = 315
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 126/213 (59%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK D + I E + L +DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNG
Sbjct: 68 VKEEDNIVIEIPEPKVLEVLPQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNG 127
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
IL+HC ++ SSI+G IRPGIVHR+DK TSGLL++AK+
Sbjct: 128 ILYHC----------------------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAKN 164
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
++H L+EQ K HTI R Y + GV + ++ PI R+P +R++MA + +
Sbjct: 165 NYAHNFLAEQLKEHTITREYEFICYGVVKEDKVTVDKPIGRNPKDRLKMAVV------KE 218
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + ++V+E + RLETGRTHQ
Sbjct: 219 GKNAITHFEVVERF--DKFTHMRARLETGRTHQ 249
>gi|443311463|ref|ZP_21041091.1| pseudouridine synthase, RluA family [Synechocystis sp. PCC 7509]
gi|442778501|gb|ELR88766.1| pseudouridine synthase, RluA family [Synechocystis sp. PCC 7509]
Length = 314
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 31/220 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
LS V+ GD + I ++QPL +AE+IPLDI+YEDD +L+VNKPA +VVHPAPG+
Sbjct: 48 LSKKATVQKGDHILIQIPDVQPLDLKAENIPLDILYEDDALLIVNKPAGLVVHPAPGHPD 107
Query: 83 GTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
GTLVN +L HC +LP + G RPGIVHRLDK T+G
Sbjct: 108 GTLVNALLAHCPNLPGI-------------------------GGVQRPGIVHRLDKDTTG 142
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
+ +AK + + HL Q K T R Y+ + GVP+ G+I++P+ R P +R +MA +P
Sbjct: 143 AIAIAKTDFAQQHLQAQLKAKTARRDYLGVVYGVPATPKGKIDLPVGRHPVDRKKMAVVP 202
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K G R+A + +++IE L L+ ++LETGRTHQ
Sbjct: 203 -IEKGG--RNAITHWEIIERL--DNYTLMHFQLETGRTHQ 237
>gi|209525222|ref|ZP_03273765.1| pseudouridine synthase, RluA family [Arthrospira maxima CS-328]
gi|423067859|ref|ZP_17056649.1| pseudouridine synthase RluA family [Arthrospira platensis C1]
gi|209494407|gb|EDZ94719.1| pseudouridine synthase, RluA family [Arthrospira maxima CS-328]
gi|406710602|gb|EKD05809.1| pseudouridine synthase RluA family [Arthrospira platensis C1]
Length = 308
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 123/214 (57%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD + I PL +A +IPLDI+YED+ +L++NKPA +VVHPAPG+ TLVN
Sbjct: 55 TVQIGDRIQVEIPPAIPLELKATNIPLDILYEDEELLIINKPAGLVVHPAPGHENDTLVN 114
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HC E + I G RPGIVHRLDK T+G + +AK
Sbjct: 115 ALLAHC-----------------------ETLAGIGGVQ-RPGIVHRLDKDTTGAIAIAK 150
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+H+H HL Q + T R Y+ + GVP +SG I+ PI R P++R +MA +P +H
Sbjct: 151 TDHAHQHLQAQIQAKTARRQYLGIIYGVPKTTSGVIDQPIGRHPSDRQKMAIVP---QHQ 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV E L G L+E+ LETGRTHQ
Sbjct: 208 GGRSAITHWKVKERL--GNYTLIEFELETGRTHQ 239
>gi|317056645|ref|YP_004105112.1| RluA family pseudouridine synthase [Ruminococcus albus 7]
gi|315448914|gb|ADU22478.1| pseudouridine synthase, RluA family [Ruminococcus albus 7]
Length = 304
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+S ++ +K D ++ I E + L+AE +DIP+DIVYEDD++LVVNKP MVVHPA GN
Sbjct: 50 VSKNYKIKNSDTISVEIPEAEELKAEPQDIPIDIVYEDDSLLVVNKPQGMVVHPAAGNPD 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L HC SSI+G IRPGIVHR+DK TSGL
Sbjct: 110 GTLVNALLFHCKGRL----------------------SSINGV-IRPGIVHRIDKFTSGL 146
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK + +H L++Q K H R Y ++ G + +G + PI R +R +M
Sbjct: 147 LMVAKTDKAHNFLAQQIKDHNFTREYNAICIGRFKEPTGTVNEPIGRSKFDRKKMCVT-- 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + Y+V+E L G +LV++RLETGRTHQ
Sbjct: 205 ---YQNCKEAVTHYEVLEDL--GQYSLVKFRLETGRTHQ 238
>gi|392940816|ref|ZP_10306460.1| pseudouridine synthase, RluA family [Thermoanaerobacter
siderophilus SR4]
gi|392292566|gb|EIW01010.1| pseudouridine synthase, RluA family [Thermoanaerobacter
siderophilus SR4]
Length = 307
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 132/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + S+ VK D V I E + + E+IPLDI+YEDD+++V+NKP MVVH
Sbjct: 44 VFVNGKTVKPSYKVKENDEVVVNIPEAEKIDVLPENIPLDILYEDDDIIVINKPQGMVVH 103
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPGN +GTLVN +L+HC + S I+G +RPGIVHRL
Sbjct: 104 PAPGNYSGTLVNALLYHC-----------------------KNLSGINGI-LRPGIVHRL 139
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSG++VVAK++ +H LS Q K ++ + Y+++ GV +G IE PI R P +R
Sbjct: 140 DKDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKDEAGEIEAPIGRHPVDRK 199
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA I R+A + YKV+E + LVE ++TGRTHQ
Sbjct: 200 KMAVIE------DGRYALTLYKVLERFK--ENTLVEAVIKTGRTHQ 237
>gi|418008048|ref|ZP_12647919.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW4]
gi|410547807|gb|EKQ22033.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW4]
Length = 306
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD++ +I E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTL
Sbjct: 49 NYKVASGDVIAISIPEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+H LP I+G IRPGIVHR+DK TSGLL+V
Sbjct: 109 VNGLLYHTDLP------------------------GINGV-IRPGIVHRIDKDTSGLLMV 143
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 144 AKTEKAQLSLSAQLKAKTSVREYLALVHGTFKEDEGTIDAPLGRDPRDRKRQAVV----- 198
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E ++ LETGRTHQ
Sbjct: 199 -ADGRHAVTHFQVLERFE--HYTFIKCILETGRTHQ 231
>gi|300812431|ref|ZP_07092861.1| pseudouridine synthase, RluA family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300496598|gb|EFK31690.1| pseudouridine synthase, RluA family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 304
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 135/226 (59%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K VS+ V+ GD++ T+ L+PL+ EAE+IPLDIVYED++V+VVNKP MVVH
Sbjct: 41 VLVNGKKSKVSYKVQKGDLIQVTVLPLEPLKLEAENIPLDIVYEDEDVIVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ + TLVN +L+H D++D E RPGIVHR+
Sbjct: 101 PAAGHPSHTLVNALLYHT----------------RDLADSPE--------GFRPGIVHRI 136
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK+ + L +Q + +R Y+++ G ++ G I+ PI R+P +R
Sbjct: 137 DKDTSGLLMVAKNAAARESLEKQLAAKSNKRQYLAIVHGNFAEEEGTIDAPIGRNPKDRK 196
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA + + + A + +KV+E G +LVE +LETGRTHQ
Sbjct: 197 QMAVVE------KGKSAVTHFKVLEQYQ--GYSLVECQLETGRTHQ 234
>gi|239631456|ref|ZP_04674487.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|417980747|ref|ZP_12621427.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 12A]
gi|417984062|ref|ZP_12624690.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 21/1]
gi|239525921|gb|EEQ64922.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|410525070|gb|EKP99977.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 12A]
gi|410526714|gb|EKQ01596.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 21/1]
Length = 306
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD++ +I E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTL
Sbjct: 49 NYKVASGDVIAISIPEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+H LP I+G IRPGIVHR+DK TSGLL+V
Sbjct: 109 VNGLLYHTDLP------------------------GINGV-IRPGIVHRIDKDTSGLLMV 143
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 144 AKTEKAQLSLSAQLKAKTSIREYLALVHGTFKEDEGTIDAPLGRDPRDRKRQAVV----- 198
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E ++ LETGRTHQ
Sbjct: 199 -ADGRHAVTHFQVLERFE--HYTFIKCILETGRTHQ 231
>gi|337748284|ref|YP_004642446.1| hypothetical protein KNP414_04043 [Paenibacillus mucilaginosus
KNP414]
gi|336299473|gb|AEI42576.1| YlyB [Paenibacillus mucilaginosus KNP414]
Length = 329
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 128/210 (60%), Gaps = 31/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + + E Q L AEDIPLD+VYED +V+VVNKP MVVHPAPG+ +GTLVN +L+
Sbjct: 82 GDSLKLVVPEPQELELTAEDIPLDVVYEDSDVIVVNKPRGMVVHPAPGHYSGTLVNALLY 141
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC +D+ S I+G +RPGIVHR+DK TSGLL+ AK++ +
Sbjct: 142 HC----------------KDL-------SGINGI-MRPGIVHRIDKDTSGLLMAAKNDLA 177
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
HA L+EQ K H+ R YI+L G +G ++ PI RDP +R ++ + N ++H
Sbjct: 178 HAGLTEQLKAHSATRKYIALVHGNVPHENGTVDAPIGRDPKDR-KLYTVTEKN----SKH 232
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E G L+E +LETGRTHQ
Sbjct: 233 AVTHFIVLERF--GDYTLLELKLETGRTHQ 260
>gi|417989705|ref|ZP_12630206.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei A2-362]
gi|417996323|ref|ZP_12636604.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei M36]
gi|418015330|ref|ZP_12654905.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lpc-37]
gi|410535634|gb|EKQ10251.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei M36]
gi|410537450|gb|EKQ12024.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei A2-362]
gi|410551806|gb|EKQ25849.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lpc-37]
Length = 306
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD++ +I E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTL
Sbjct: 49 NYKVASGDVIAISIPEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+H LP I+G IRPGIVHR+DK TSGLL+V
Sbjct: 109 VNGLLYHTDLP------------------------GINGV-IRPGIVHRIDKDTSGLLMV 143
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 144 AKTEKAQLSLSAQLKAKTSIREYLALVRGTFKEDEGTIDAPLGRDPRDRKRQAVV----- 198
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E ++ LETGRTHQ
Sbjct: 199 -AAGRHAVTHFQVLERFE--HYTFIKCILETGRTHQ 231
>gi|169350183|ref|ZP_02867121.1| hypothetical protein CLOSPI_00927 [Clostridium spiroforme DSM 1552]
gi|169292966|gb|EDS75099.1| pseudouridine synthase, RluA family [Clostridium spiroforme DSM
1552]
Length = 306
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 127/217 (58%), Gaps = 33/217 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ K D + TI + L EAEDIPL++VYED +V+V++KP M+VHP+PG +GTL
Sbjct: 51 SYKTKLNDQIEITIEDNSDLEIEAEDIPLNVVYEDKDVIVIDKPTGMIVHPSPGITSGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC +D+S I+G + RPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC----------------KDLS-------GINGVN-RPGIVHRIDKETSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LSEQ K H++ R Y++L G+ G+I+ PI R+PN+R M ++K
Sbjct: 147 AKNDIAHRFLSEQLKDHSVTRRYVALVHGLIPHVQGKIDAPIGRNPNDRQSMCVTKNNSK 206
Query: 206 HGQARHAA-SRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ RYK +L+E RLETGRTHQ
Sbjct: 207 NAITNFTVLKRYK--------NMSLIECRLETGRTHQ 235
>gi|417992968|ref|ZP_12633319.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei CRF28]
gi|410532377|gb|EKQ07085.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei CRF28]
Length = 291
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD++ +I E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTL
Sbjct: 49 NYKVASGDVIAISIPEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+H LP I+G IRPGIVHR+DK TSGLL+V
Sbjct: 109 VNGLLYHTDLP------------------------GINGV-IRPGIVHRIDKDTSGLLMV 143
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 144 AKTEKAQLSLSAQLKAKTSIREYLALVRGTFKEDEGTIDAPLGRDPRDRKRQAVV----- 198
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E ++ LETGRTHQ
Sbjct: 199 -AAGRHAVTHFQVLERFE--HYTFIKCILETGRTHQ 231
>gi|116494944|ref|YP_806678.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
ATCC 334]
gi|227535056|ref|ZP_03965105.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|301066507|ref|YP_003788530.1| 23S RNA-specific pseudouridylate synthase [Lactobacillus casei str.
Zhang]
gi|417986821|ref|ZP_12627386.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 32G]
gi|417999198|ref|ZP_12639410.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei T71499]
gi|418002143|ref|ZP_12642267.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UCD174]
gi|418010905|ref|ZP_12650676.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lc-10]
gi|116105094|gb|ABJ70236.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei ATCC 334]
gi|227187271|gb|EEI67338.1| pseudouridylate synthase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|300438914|gb|ADK18680.1| Pseudouridylate synthase, 23S RNA-specific [Lactobacillus casei
str. Zhang]
gi|410524555|gb|EKP99463.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei 32G]
gi|410539748|gb|EKQ14273.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei T71499]
gi|410544826|gb|EKQ19140.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UCD174]
gi|410553484|gb|EKQ27487.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei Lc-10]
Length = 306
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD++ +I E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTL
Sbjct: 49 NYKVASGDVIAISIPEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+H LP I+G IRPGIVHR+DK TSGLL+V
Sbjct: 109 VNGLLYHTDLP------------------------GINGV-IRPGIVHRIDKDTSGLLMV 143
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 144 AKTEKAQLSLSAQLKAKTSIREYLALVHGTFKEDEGTIDAPLGRDPRDRKRQAVV----- 198
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E ++ LETGRTHQ
Sbjct: 199 -ADGRHAVTHFQVLERFE--HYTFIKCILETGRTHQ 231
>gi|126649705|ref|ZP_01721941.1| YlyB [Bacillus sp. B14905]
gi|126593424|gb|EAZ87369.1| YlyB [Bacillus sp. B14905]
Length = 303
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 135/233 (57%), Gaps = 32/233 (13%)
Query: 9 NQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 68
N VS + ++ D + + VK GD++ + E +PL AE++ LDIVYED +VLVVNK
Sbjct: 35 NWVSDGNIKVNGDAVKPKYKVKAGDVIAIDVPEAEPLDVIAENLALDIVYEDADVLVVNK 94
Query: 69 PAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 128
P MVVHPAPG+ TGTLVNG+++ C +D+ S I+G +R
Sbjct: 95 PKGMVVHPAPGHLTGTLVNGLMYQC----------------KDL-------SGINGI-MR 130
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 188
PGIVHR+DK TSGLL+VAK++ +H L +Q T+ R YI+L G + G I+ PI
Sbjct: 131 PGIVHRIDKDTSGLLMVAKNDVAHESLVDQLVNKTVTRKYIALVHGHIAHDKGTIDAPIG 190
Query: 189 RDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RD +R + A + +HA + + V+E G LVE RLETGRTHQ
Sbjct: 191 RDQKDRQKQAIV------DNGKHAVTHFHVVERF--GDYTLVECRLETGRTHQ 235
>gi|110635475|ref|YP_675683.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
gi|110286459|gb|ABG64518.1| ribosomal large subunit pseudouridine synthase D [Chelativorans sp.
BNC1]
Length = 343
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 126/225 (56%), Gaps = 34/225 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
V G+ T+ E + + EDIPLDI+YED+ ++V++KPA +VVHP PGN TGTL
Sbjct: 63 KRKVAAGEFYCITLPEPEAPEPQGEDIPLDILYEDEALIVIDKPAGLVVHPGPGNWTGTL 122
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++HHC + S I G RPGIVHRLD+ TSG++VV
Sbjct: 123 VNALIHHCG----------------------DTLSGIGGVR-RPGIVHRLDRDTSGVMVV 159
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK + +H L+E F H +ER Y++L GVP + SG ++ P+ R ++R A +P
Sbjct: 160 AKTDQAHRVLAEAFADHGQDGDLERAYVALVWGVPRRISGLVDAPLGRSASDRTLRAVVP 219
Query: 202 GSNKHGQARHAASRYKVIEILAGGG-----SALVEWRLETGRTHQ 241
ARHA + Y V+E G +ALVE RLETGRTHQ
Sbjct: 220 --QGRADARHAVTHYTVLERYGTGTPEEQIAALVECRLETGRTHQ 262
>gi|433772820|ref|YP_007303287.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
gi|433664835|gb|AGB43911.1| pseudouridine synthase, RluA family [Mesorhizobium australicum
WSM2073]
Length = 351
Score = 163 bits (412), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 130/223 (58%), Gaps = 35/223 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
++ G+ V+ + E +P + + E+I LD++YEDD ++V+NKPA +VVHP GN TGTLVN
Sbjct: 74 KMRAGENVSVAMPEPEPAQPQGENIALDVLYEDDELIVINKPAGLVVHPGAGNWTGTLVN 133
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++HHC + S I G RPGIVHRLDK TSG++VVAK
Sbjct: 134 ALIHHCG----------------------DSLSGIGGVR-RPGIVHRLDKETSGVMVVAK 170
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+ +H LSE F H +ER Y++L G+P + +G I+ P+ R ++R+R A +P
Sbjct: 171 TDRAHKALSEAFADHGLTGDLERAYLALVWGIPQRPTGTIDAPLGR-ASDRVRRAVVPEG 229
Query: 204 NKHGQARHAASRYKVIEILAGG-----GSALVEWRLETGRTHQ 241
ARHA +R+ V E G ++LVE RLETGRTHQ
Sbjct: 230 RD--DARHAVTRFAVQERFGEGQREFAAASLVECRLETGRTHQ 270
>gi|340749928|ref|ZP_08686775.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
mortiferum ATCC 9817]
gi|229419571|gb|EEO34618.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
mortiferum ATCC 9817]
Length = 318
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 140/221 (63%), Gaps = 32/221 (14%)
Query: 22 KLSVSHN-VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
K++ S N +KG +++ I E + L EDIPLDI+YED +++V+NK ++VVHPA GN
Sbjct: 51 KITKSGNKLKGTEIIVVNIPEDEVLDLTPEDIPLDIIYEDSDIVVINKAPNLVVHPAHGN 110
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
+GTLVN +L+H +D+S +I+G IRPGIVHRLDK TS
Sbjct: 111 YSGTLVNALLYHI----------------KDLS-------TINGV-IRPGIVHRLDKDTS 146
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
G++VVAK++ +H LSE FK T+E++Y+ + G+ + SGRI+ I RD +R +MA +
Sbjct: 147 GVIVVAKNDEAHGKLSEMFKEKTLEKIYVCIAKGIFKEKSGRIKTLIGRDSRDRKKMAVV 206
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N++G+ A S Y+VI+ G +LV+ R+ETGRTHQ
Sbjct: 207 ---NENGKI--AISNYEVID--EGKNHSLVKVRIETGRTHQ 240
>gi|225181681|ref|ZP_03735121.1| pseudouridine synthase, RluA family [Dethiobacter alkaliphilus AHT
1]
gi|225167662|gb|EEG76473.1| pseudouridine synthase, RluA family [Dethiobacter alkaliphilus AHT
1]
Length = 312
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 126/216 (58%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ G+ V T+ E++P AE I LDI+YED +VLV+NKP +V+HPA G+A GTL
Sbjct: 52 NYRLRAGETVEVTVPEVKPAEIAAEKIDLDILYEDQDVLVLNKPKGLVIHPAAGHAGGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC +D+S G RPGIVHRLDK TSG++VV
Sbjct: 112 VNALLHHC----------------DDLSG--------IGGEARPGIVHRLDKDTSGVMVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS QFK H++ R Y+++ G P+ G I+ I+R P R +MA
Sbjct: 148 AKNDRAHLSLSRQFKAHSVTREYVAIVHGEPAVEQGTIDAAIARHPKERKKMALTTAE-- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R A + +KV++ G + + RLETGRTHQ
Sbjct: 206 --KGRRAVTHFKVLDRF--GEYSYLALRLETGRTHQ 237
>gi|402833548|ref|ZP_10882161.1| pseudouridine synthase, RluA family [Selenomonas sp. CM52]
gi|402280041|gb|EJU28811.1| pseudouridine synthase, RluA family [Selenomonas sp. CM52]
Length = 301
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 123/214 (57%), Gaps = 32/214 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
++ GD V + E Q L EDIPLDI+YED +V+V+NK MVVHPA G A GTLVN
Sbjct: 53 KLREGDAVETELPEAQELEILPEDIPLDILYEDSDVIVINKARGMVVHPAAGAADGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC ED+S I+G IRPGIVHRLDK TSG++V AK
Sbjct: 113 ALLHHC----------------EDLS-------GINGV-IRPGIVHRLDKDTSGVMVAAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
++ +H L+EQ + T +R+Y ++ G ++ G I PI R P R +MA +PG
Sbjct: 149 NDRAHVDLAEQIREKTAQRIYRAIVCGTIAEDRGEIRAPIGRHPTERKKMAVVPG----- 203
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E LVE RL+TGRTHQ
Sbjct: 204 -GKEATTLFRVVERFP--AHTLVECRLKTGRTHQ 234
>gi|340355065|ref|ZP_08677758.1| ribosomal large subunit pseudouridine synthase D [Sporosarcina
newyorkensis 2681]
gi|339622746|gb|EGQ27260.1| ribosomal large subunit pseudouridine synthase D [Sporosarcina
newyorkensis 2681]
Length = 302
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 130/216 (60%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK GD+V+ E + EAED+ L+IVYED +VLVVNKP MVVHP+PG+ +GTL
Sbjct: 52 NYKVKTGDVVSVEQPEPEAYDIEAEDLNLEIVYEDQDVLVVNKPVGMVVHPSPGHLSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++H C+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 112 VNGLMHQCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L +Q ++ RVY +L G +G I+ PI RDP +R +MA +
Sbjct: 148 AKNDKAHVSLVDQLVEKSVNRVYTALVHGHIPHDNGTIDAPIGRDPRDRQKMAVV----- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + +KV+E G LVE RLETGRTHQ
Sbjct: 203 -DNGKNAVTHFKVLERF--GDYTLVECRLETGRTHQ 235
>gi|148262954|ref|YP_001229660.1| RluA family pseudouridine synthase [Geobacter uraniireducens Rf4]
gi|146396454|gb|ABQ25087.1| ribosomal large subunit pseudouridine synthase D [Geobacter
uraniireducens Rf4]
Length = 320
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 127/216 (58%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +KGG+ + TI AE IPL+I++ED N++VVNK A MVVHP GN+ GTL
Sbjct: 52 SLKLKGGERLMVTIPPPVAAEPAAETIPLEILFEDRNLVVVNKAAGMVVHPGAGNSGGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC+ D+S G +RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLGHCT----------------DLSG--------IGGELRPGIVHRIDKDTSGVLVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L+EQFK HTI+RVY++L G P GR+E I R P +R RM+ G K
Sbjct: 148 AKSDAAHQSLAEQFKEHTIKRVYLALVYGAPKDDKGRLESHIGRHPVDRKRMS---GKAK 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HG +HA + ++V+ G L+ RLETGRTHQ
Sbjct: 205 HG--KHAVTHWRVVGRYR--GITLLRLRLETGRTHQ 236
>gi|182417977|ref|ZP_02949285.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum 5521]
gi|237667420|ref|ZP_04527404.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182378148|gb|EDT75683.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum 5521]
gi|237655768|gb|EEP53324.1| ribosomal large subunit pseudouridine synthase D [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 304
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 130/219 (59%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ +K D + I E + L EAE+IP+DIVYED++V+VVNK MVVHPAPGN
Sbjct: 49 LKSNYKLKKADEIEIMIPEPEILSVEAENIPIDIVYEDEDVIVVNKAQGMVVHPAPGNYN 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC +D+ SSI+G IRPGIVHR+DK TSG+
Sbjct: 109 GTLVNALLYHC----------------KDL-------SSINGV-IRPGIVHRIDKDTSGI 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LV+AK++ +H LSEQ K H+++R Y +L G + G I+ P+ R +R+++ I
Sbjct: 145 LVIAKNDDAHNKLSEQLKDHSMKREYYALIEGRLKNNDGTIDKPLGRCKKDRLKIGIIE- 203
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + Y+V+E G LV+ LETGRTHQ
Sbjct: 204 -----DGKRAVTHYEVVE--RYNGYTLVKCVLETGRTHQ 235
>gi|191638454|ref|YP_001987620.1| pseudouridine synthase [Lactobacillus casei BL23]
gi|385820159|ref|YP_005856546.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei LC2W]
gi|409997315|ref|YP_006751716.1| RNA pseudouridine synthase YlyB [Lactobacillus casei W56]
gi|190712756|emb|CAQ66762.1| Pseudouridine synthase [Lactobacillus casei BL23]
gi|327382486|gb|AEA53962.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei LC2W]
gi|406358327|emb|CCK22597.1| Uncharacterized RNA pseudouridine synthase YlyB [Lactobacillus
casei W56]
Length = 307
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD++ +I E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTL
Sbjct: 50 NYKVASGDVIAISIPEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+H LP I+G IRPGIVHR+DK TSGLL+V
Sbjct: 110 VNGLLYHTDLP------------------------GINGV-IRPGIVHRIDKDTSGLLMV 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 145 AKTEKAQLSLSAQLKAKTSIREYLALVHGTFKEDEGTIDAPLGRDPRDRKRQAVV----- 199
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E ++ LETGRTHQ
Sbjct: 200 -AAGRHAVTHFQVLERFE--HYTFIKCILETGRTHQ 232
>gi|227824343|ref|ZP_03989175.1| pseudouridine synthase [Acidaminococcus sp. D21]
gi|226904842|gb|EEH90760.1| pseudouridine synthase [Acidaminococcus sp. D21]
Length = 311
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 126/219 (57%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ S+ VK GD+ I L AE E IPL I+YED++V+VVNKP MVVHPA GN T
Sbjct: 53 VKASYKVKLGDVFTVVIPPAVSLEAEPEPIPLAILYEDEDVIVVNKPRGMVVHPAAGNYT 112
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC +D+ S I+G +RPGIVHRLDK TSG+
Sbjct: 113 GTLVNALLYHC----------------KDL-------SGINGV-VRPGIVHRLDKDTSGV 148
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
+V AK++ +H LS+Q K +R YI++ G G IE I RDP +R+RMA +P
Sbjct: 149 MVCAKNDRAHLSLSQQIKDKEAKRTYIAVVRGNIKDDRGHIETLIDRDPKDRMRMAVVPS 208
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y+V+E G +V RL+TGRTHQ
Sbjct: 209 G-----GRLAVTDYEVLERY--GRFTVVRCRLQTGRTHQ 240
>gi|339448356|ref|ZP_08651912.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus
fructivorans KCTC 3543]
Length = 305
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 122/210 (58%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD++ I E +PL +DIPLDIVYEDD V+VVNKP MVVHPAPG+ TLVN +L+
Sbjct: 56 GDLIQIAIPEPKPLDLTPQDIPLDIVYEDDQVIVVNKPQGMVVHPAPGHPDHTLVNALLY 115
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
H L SSI+G ++RPGIVHR+DK TSGLL+VAK + +
Sbjct: 116 HTKL------------------------SSING-TVRPGIVHRIDKDTSGLLMVAKTDVA 150
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H LS+Q K T R Y++L G +S G I+ PI R +R + A I G R
Sbjct: 151 HKSLSKQLKEKTNRRKYLALVHGNIKESYGTIDAPIGRSTKDRKKQAVITG------GRP 204
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E GG LVE +LETGRTHQ
Sbjct: 205 AITHFHVLERF-GGKYTLVECQLETGRTHQ 233
>gi|422843703|ref|ZP_16890413.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325686216|gb|EGD28262.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 304
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 144/244 (59%), Gaps = 36/244 (14%)
Query: 2 ELVELEFNQVSVLA----LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIV 57
E+++L +++ L + ++ K VS+ V+ GD++ T+ L+PL+ EAE+IPLDIV
Sbjct: 23 EMIDLSRSRIKELVQAGEVLVNGKKSKVSYKVQKGDLIQVTVLPLEPLKLEAENIPLDIV 82
Query: 58 YEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEE 117
YED++++VVNKP MVVHPA G+ + TLVN +L+H D++D E
Sbjct: 83 YEDEDIIVVNKPQGMVVHPAVGHPSHTLVNALLYHT----------------RDLADSPE 126
Query: 118 FSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPS 177
RPGIVHR+DK TSGLL+VAK+ + L +Q + +R Y+++ G +
Sbjct: 127 --------GFRPGIVHRIDKDTSGLLMVAKNAAARESLEKQLAAKSNKRQYLAIVHGNFA 178
Query: 178 QSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETG 237
+ G I+ PI R+P +R +MA + + + A + +KV+E G +LVE +LETG
Sbjct: 179 EEEGTIDAPIGRNPKDRKQMAVVE------KGKSAVTHFKVLEQYQ--GYSLVECQLETG 230
Query: 238 RTHQ 241
RTHQ
Sbjct: 231 RTHQ 234
>gi|334133945|ref|ZP_08507480.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF7]
gi|333608453|gb|EGL19750.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF7]
Length = 321
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 133/216 (61%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ + G +V+ I + +PL AE+IPLD+VYED +V+V+NKP +VVHPAPG+ +GTL
Sbjct: 70 NYKLSEGQVVDLAIPDPEPLDIAAENIPLDVVYEDGDVIVINKPRGLVVHPAPGHYSGTL 129
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++HHC +D+ S I+G +RPGIVHR+DK TSGLL++
Sbjct: 130 VNALMHHC----------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLMI 165
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +HA L+EQ K H++ R Y++L G G I+ PI RD +R ++ + N
Sbjct: 166 AKNDQAHASLAEQLKEHSVTRKYVALVHGNLQHDHGTIDAPIGRDSYDR-KLYTVTDKN- 223
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++HA + + V+E G LVE +LETGRTHQ
Sbjct: 224 ---SKHAVTHFAVLERF--DGYTLVELKLETGRTHQ 254
>gi|385823357|ref|YP_005859699.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei BD-II]
gi|418005172|ref|ZP_12645168.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW1]
gi|327385684|gb|AEA57158.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Lactobacillus casei BD-II]
gi|410547425|gb|EKQ21658.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
casei UW1]
Length = 306
Score = 162 bits (411), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD++ +I E +PL A E IPLDIVYEDD V+VV+KP MVVHPAPG+ GTL
Sbjct: 49 NYKVASGDVIAISIPEAKPLEAIPEPIPLDIVYEDDQVIVVDKPQGMVVHPAPGHPDGTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+H LP I+G IRPGIVHR+DK TSGLL+V
Sbjct: 109 VNGLLYHTDLP------------------------GINGV-IRPGIVHRIDKDTSGLLMV 143
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E + LS Q K T R Y++L G + G I+ P+ RDP +R R A +
Sbjct: 144 AKTEKAQLSLSAQLKAKTSIREYLALVHGTFKEDEGTIDAPLGRDPRDRKRQAVV----- 198
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+E ++ LETGRTHQ
Sbjct: 199 -AAGRHAVTHFQVLERFE--HYTFIKCILETGRTHQ 231
>gi|379723203|ref|YP_005315334.1| hypothetical protein PM3016_5487 [Paenibacillus mucilaginosus 3016]
gi|386725924|ref|YP_006192250.1| hypothetical protein B2K_27955 [Paenibacillus mucilaginosus K02]
gi|378571875|gb|AFC32185.1| YlyB [Paenibacillus mucilaginosus 3016]
gi|384093049|gb|AFH64485.1| hypothetical protein B2K_27955 [Paenibacillus mucilaginosus K02]
Length = 329
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 128/210 (60%), Gaps = 31/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + + E Q L AEDIPLD++YED +V+VVNKP MVVHPAPG+ +GTLVN +L+
Sbjct: 82 GDSLKLVVPEPQELELTAEDIPLDVIYEDSDVIVVNKPRGMVVHPAPGHYSGTLVNALLY 141
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC +D+ S I+G +RPGIVHR+DK TSGLL+ AK++ +
Sbjct: 142 HC----------------KDL-------SGINGI-MRPGIVHRIDKDTSGLLMAAKNDLA 177
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
HA L+EQ K H+ R YI+L G +G ++ PI RDP +R ++ + N ++H
Sbjct: 178 HAGLTEQLKAHSATRKYIALVHGNVPHENGTVDAPIGRDPKDR-KLYTVTEKN----SKH 232
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E G L+E +LETGRTHQ
Sbjct: 233 AVTHFIVLERF--GDYTLLELKLETGRTHQ 260
>gi|434398133|ref|YP_007132137.1| ribosomal large subunit pseudouridine synthase D [Stanieria
cyanosphaera PCC 7437]
gi|428269230|gb|AFZ35171.1| ribosomal large subunit pseudouridine synthase D [Stanieria
cyanosphaera PCC 7437]
Length = 314
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 125/210 (59%), Gaps = 29/210 (13%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + TI +PL +AEDIPLDI+YED++++++NKPA +VVHPAPG+ TGTLV+ +L
Sbjct: 61 GDCLEVTIPSPEPLNLQAEDIPLDILYEDEDLIIINKPADLVVHPAPGHETGTLVHALLS 120
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC LA G RPGIVHRLDK T+G +V+AK++++
Sbjct: 121 HCD--NLAGI----------------------GGIKRPGIVHRLDKDTTGAIVIAKNDYA 156
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H HL Q K T R Y + G S G+I++P+ R P R +MA +P K G R
Sbjct: 157 HQHLQAQIKAKTARREYWGIVYGSYSDLEGKIDLPVGRHPVERKKMAVVP-VEKGG--RE 213
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + +K++E L G L+E+ LETGRTHQ
Sbjct: 214 AVTHWKILERL--GNYTLMEFLLETGRTHQ 241
>gi|313123676|ref|YP_004033935.1| pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312280239|gb|ADQ60958.1| Pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 304
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 132/220 (60%), Gaps = 32/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K VS+ V+ GD++ T+ L+PL+ EAE+IPLDIVYED++++VVNKP MVVHPA G+
Sbjct: 47 KSKVSYKVQKGDLIQVTVLPLEPLKLEAENIPLDIVYEDEDIIVVNKPQGMVVHPAAGHP 106
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
+ TLVN +L+H D++D E RPGIVHR+DK TSG
Sbjct: 107 SHTLVNALLYHT----------------RDLADSPE--------GFRPGIVHRIDKDTSG 142
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL+VAK+ + L +Q + +R Y+++ G ++ G I+ PI R+P +R +MA +
Sbjct: 143 LLMVAKNAAARESLEKQLAAKSNKRQYLAIVHGNFAEEEGTIDAPIGRNPKDRKQMAVVE 202
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + +KV+E G +LVE +LETGRTHQ
Sbjct: 203 ------KGKSAVTHFKVLEQYQ--GYSLVECQLETGRTHQ 234
>gi|299535889|ref|ZP_07049209.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZC1]
gi|424738829|ref|ZP_18167258.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZB2]
gi|298728641|gb|EFI69196.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZC1]
gi|422947313|gb|EKU41710.1| putative RNA pseudouridine synthase ylyB [Lysinibacillus fusiformis
ZB2]
Length = 303
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 134/233 (57%), Gaps = 32/233 (13%)
Query: 9 NQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 68
N +S + ++ D + + VK GD++ + E++ L E++ LDIVYED +VLVVNK
Sbjct: 35 NWISDGVIKVNGDAVKAKYKVKAGDIIAIDVPEVEELDVVPENLDLDIVYEDADVLVVNK 94
Query: 69 PAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 128
P MVVHPAPG+ GTLVNG+++HC +D+ S I+G +R
Sbjct: 95 PKGMVVHPAPGHMGGTLVNGLMYHC----------------KDL-------SGINGV-LR 130
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 188
PGIVHR+DK TSGLL+VAK++ +H L Q T+ R YI+L G + G I+ PI
Sbjct: 131 PGIVHRIDKDTSGLLMVAKNDTAHESLVNQLVNKTVTRKYIALVHGHIAHDKGTIDAPIG 190
Query: 189 RDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RD +R + A + +HA + ++V+E G LVE RLETGRTHQ
Sbjct: 191 RDQKDRQKQAVVD------NGKHAVTHFQVVERF--GDYTLVECRLETGRTHQ 235
>gi|254976188|ref|ZP_05272660.1| putative pseudouridylate synthase [Clostridium difficile QCD-66c26]
gi|255093577|ref|ZP_05323055.1| putative pseudouridylate synthase [Clostridium difficile CIP
107932]
gi|255315322|ref|ZP_05356905.1| putative pseudouridylate synthase [Clostridium difficile QCD-76w55]
gi|255517989|ref|ZP_05385665.1| putative pseudouridylate synthase [Clostridium difficile QCD-97b34]
gi|255651105|ref|ZP_05398007.1| putative pseudouridylate synthase [Clostridium difficile QCD-37x79]
gi|384361812|ref|YP_006199664.1| pseudouridylate synthase [Clostridium difficile BI1]
Length = 315
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 125/213 (58%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK D + I E + L +DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNG
Sbjct: 68 VKEEDNIVIEIPEPKVLEVLPQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNG 127
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
IL+HC ++ SSI+G IRPGIVHR+DK TSGLL++AK+
Sbjct: 128 ILYHC----------------------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAKN 164
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
++H L+EQ K HTI R Y + GV + ++ PI R+P +R++MA +
Sbjct: 165 NYAHNFLAEQLKEHTITREYEFICYGVVKEDKITVDKPIGRNPKDRLKMAVV------KD 218
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + ++V+E + RLETGRTHQ
Sbjct: 219 GKNAITHFEVVERF--DKFTHMRARLETGRTHQ 249
>gi|291542663|emb|CBL15773.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus
bromii L2-63]
Length = 306
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 131/230 (56%), Gaps = 36/230 (15%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
A+ ++ +S + + GD+V + + P A+AE+IPLDIVYED+ +LVVNKP MVV
Sbjct: 39 AVLVNDSVVSKKYKLSQGDIVVVNVPDPTPYEAKAENIPLDIVYEDECLLVVNKPKGMVV 98
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIV 132
HPA GN GTLVN +L+HC S+SG + +RPGIV
Sbjct: 99 HPAAGNYDGTLVNALLYHC-------------------------GDSLSGINGVLRPGIV 133
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
HR+DK TSGLL+VAK++ SH L+EQ K H+ R Y S+ G G ++ PI R+P
Sbjct: 134 HRIDKDTSGLLIVAKNDFSHRSLAEQIKEHSFTREYESIVFGNLKNDEGTVDAPIGRNPK 193
Query: 193 NRIRMAAIPGSNKHGQARHAA-SRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R +M I ++K+ ++ +RYK G ++ +LETGRTHQ
Sbjct: 194 DRKKMCVIEKNSKNAVTHYSVITRYK--------GYTHIKCKLETGRTHQ 235
>gi|357974156|ref|ZP_09138127.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
KC8]
Length = 318
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 129/216 (59%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S V G + ++ PL EA+DIPL I YED++++V++KPA +VVHPA GN GTL
Sbjct: 58 SAKVASGSAFDVSVPPPAPLENEAQDIPLVIAYEDEHLIVIDKPAGLVVHPAAGNLDGTL 117
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC + S S G RPGIVHR+DK TSGL+V
Sbjct: 118 VNALLHHC-----------------------QGSLSGIGGVARPGIVHRIDKDTSGLMVA 154
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L+ QF H+I+R Y ++ +G+P+ ++G I+ P++R NR ++A +
Sbjct: 155 AKTDLAHEGLARQFAAHSIDRRYRAIVAGLPNPTTGTIDAPLARSTTNRKKIAIV----S 210
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G+ + A + Y++I L G+++VE RLETGRTHQ
Sbjct: 211 DGRGKRAVTHYRLIAALK--GASVVECRLETGRTHQ 244
>gi|428318071|ref|YP_007115953.1| ribosomal large subunit pseudouridine synthase D [Oscillatoria
nigro-viridis PCC 7112]
gi|428241751|gb|AFZ07537.1| ribosomal large subunit pseudouridine synthase D [Oscillatoria
nigro-viridis PCC 7112]
Length = 321
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 125/214 (58%), Gaps = 30/214 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+VK GD ++ T+ E QP + E IPLDI+YEDD+++++NKPA +VVHPA G+A GTLVN
Sbjct: 66 SVKTGDRIHLTLPETQPTSLQPEAIPLDILYEDDSLIIINKPAGLVVHPAAGHADGTLVN 125
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HC L + I G RPGIVHRLDK T+G + +AK
Sbjct: 126 ALLAHCPL------------------------AEIGGVQ-RPGIVHRLDKDTTGAIAIAK 160
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y+ + G PS +G I++PI R P +R +MA +P K G
Sbjct: 161 TDIAHQHLQAQLKTKTARREYLGVVYGTPSTETGTIDLPIGRHPTDRKKMAVVP-VEKGG 219
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + + + E + G L+ ++LETGRTHQ
Sbjct: 220 --RPAVTHWTIKERI--GNYCLMHYQLETGRTHQ 249
>gi|255101761|ref|ZP_05330738.1| putative pseudouridylate synthase [Clostridium difficile QCD-63q42]
gi|255307629|ref|ZP_05351800.1| putative pseudouridylate synthase [Clostridium difficile ATCC
43255]
gi|423092627|ref|ZP_17080431.1| pseudouridine synthase, RluA family [Clostridium difficile
70-100-2010]
gi|357553497|gb|EHJ35244.1| pseudouridine synthase, RluA family [Clostridium difficile
70-100-2010]
Length = 315
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 125/213 (58%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK D + I E + L +DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNG
Sbjct: 68 VKEEDNIVIEIPEPKVLEVLPQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNG 127
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
IL+HC ++ SSI+G IRPGIVHR+DK TSGLL++AK+
Sbjct: 128 ILYHC----------------------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAKN 164
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
++H L+EQ K HTI R Y + GV + ++ PI R+P +R++MA +
Sbjct: 165 NYAHNFLAEQLKEHTITREYEFICYGVVKEDKITVDKPIGRNPKDRLKMAVV------KD 218
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + ++V+E + RLETGRTHQ
Sbjct: 219 GKNAITHFEVVERF--DKFTHMRARLETGRTHQ 249
>gi|352684044|ref|YP_004896028.1| pseudouridine synthase [Acidaminococcus intestini RyC-MR95]
gi|350278698|gb|AEQ21888.1| pseudouridine synthase [Acidaminococcus intestini RyC-MR95]
Length = 318
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 126/219 (57%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ S+ VK GD+ I L AE E IPL I+YED++V+VVNKP MVVHPA GN T
Sbjct: 60 VKASYKVKLGDVFTVVIPPAVSLEAEPEPIPLAILYEDEDVIVVNKPRGMVVHPAAGNYT 119
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC +D+ S I+G +RPGIVHRLDK TSG+
Sbjct: 120 GTLVNALLYHC----------------KDL-------SGINGV-VRPGIVHRLDKDTSGV 155
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
+V AK++ +H LS+Q K +R YI++ G G IE I RDP +R+RMA +P
Sbjct: 156 MVCAKNDRAHLSLSQQIKDKEAKRTYIAVVRGNIKDDRGHIETLIDRDPKDRMRMAVVPS 215
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y+V+E G +V RL+TGRTHQ
Sbjct: 216 G-----GRLAVTDYEVLERY--GRFTVVRCRLQTGRTHQ 247
>gi|260684170|ref|YP_003215455.1| pseudouridylate synthase [Clostridium difficile CD196]
gi|260687829|ref|YP_003218963.1| pseudouridylate synthase [Clostridium difficile R20291]
gi|260210333|emb|CBA64669.1| putative pseudouridylate synthase [Clostridium difficile CD196]
gi|260213846|emb|CBE05842.1| putative pseudouridylate synthase [Clostridium difficile R20291]
Length = 303
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 125/213 (58%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK D + I E + L +DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNG
Sbjct: 56 VKEEDNIVIEIPEPKVLEVLPQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNG 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
IL+HC ++ SSI+G IRPGIVHR+DK TSGLL++AK+
Sbjct: 116 ILYHC----------------------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAKN 152
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
++H L+EQ K HTI R Y + GV + ++ PI R+P +R++MA +
Sbjct: 153 NYAHNFLAEQLKEHTITREYEFICYGVVKEDKITVDKPIGRNPKDRLKMAVV------KD 206
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + ++V+E + RLETGRTHQ
Sbjct: 207 GKNAITHFEVVERF--DKFTHMRARLETGRTHQ 237
>gi|294011927|ref|YP_003545387.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
japonicum UT26S]
gi|390167381|ref|ZP_10219372.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
indicum B90A]
gi|390167660|ref|ZP_10219641.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
indicum B90A]
gi|292675257|dbj|BAI96775.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
japonicum UT26S]
gi|389589726|gb|EIM67740.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
indicum B90A]
gi|389590083|gb|EIM68088.1| ribosomal large subunit pseudouridine synthase D [Sphingobium
indicum B90A]
Length = 320
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/200 (45%), Positives = 127/200 (63%), Gaps = 31/200 (15%)
Query: 44 PLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 101
P+ AEA +DIPL IV+ED +++V++KPA +VVHPA GN GTLVN +LHHC
Sbjct: 76 PMEAEAVAQDIPLAIVHEDADLIVIDKPAGLVVHPAAGNLDGTLVNALLHHC-------- 127
Query: 102 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKL 161
+ S I G + RPGIVHR+DK TSGLLVVAK + +H L++QFK
Sbjct: 128 --------------QGRLSGIGGVA-RPGIVHRIDKDTSGLLVVAKSDRAHEGLAQQFKA 172
Query: 162 HTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEI 221
H+I+R+Y ++ GVP ++G ++ I R +R +MA ++ G+ +HA + Y+ +E
Sbjct: 173 HSIDRLYAAIVYGVPQPAAGTVDSWIGRSDADRKKMAV----HREGRGKHAVTHYRTMER 228
Query: 222 LAGGGSALVEWRLETGRTHQ 241
L G+A+VE RLETGRTHQ
Sbjct: 229 LR--GAAMVECRLETGRTHQ 246
>gi|409993260|ref|ZP_11276408.1| RluA family pseudouridine synthase [Arthrospira platensis str.
Paraca]
gi|291568935|dbj|BAI91207.1| probable pseudouridine synthase [Arthrospira platensis NIES-39]
gi|409935884|gb|EKN77400.1| RluA family pseudouridine synthase [Arthrospira platensis str.
Paraca]
Length = 308
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 124/214 (57%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD + I PL +A +IPLDI+YED+ +L++NKPA +VVHPAPG+A TLVN
Sbjct: 55 TVQIGDRIQVEIPPAIPLELKATNIPLDILYEDEELLIINKPAGLVVHPAPGHANDTLVN 114
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HC E + I G RPGIVHRLDK T+G + +AK
Sbjct: 115 ALLAHC-----------------------ETLAGIGGVQ-RPGIVHRLDKDTTGAIAIAK 150
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+H+H HL Q + T R Y+ + GVP +SG I+ PI R ++R +MA +P +H
Sbjct: 151 TDHAHQHLQAQIQAKTARRQYLGIIYGVPKTTSGVIDQPIGRHHSDRKKMAIVP---EHQ 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A +R++V E L G L+E+ LETGRTHQ
Sbjct: 208 GGRSAITRWQVQERL--GNYTLIEFELETGRTHQ 239
>gi|408411254|ref|ZP_11182423.1| Pseudouridine synthase [Lactobacillus sp. 66c]
gi|407874547|emb|CCK84229.1| Pseudouridine synthase [Lactobacillus sp. 66c]
Length = 302
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 141/244 (57%), Gaps = 36/244 (14%)
Query: 2 ELVELEFNQVSVLA----LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIV 57
E ++L +++ LA + ++ K VS+ V+ GD + I L+PL E E+IPLDIV
Sbjct: 22 ERIDLSRSRIKDLAQAGQVLVNGKKAKVSYKVEAGDQIEVNILPLEPLDLEPENIPLDIV 81
Query: 58 YEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEE 117
YEDD+V+VVNKP MVVHPA G+ TLVN +L+H D++D E
Sbjct: 82 YEDDDVIVVNKPQGMVVHPAAGHPNHTLVNALLYHT----------------RDLADSPE 125
Query: 118 FSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPS 177
RPGIVHR+DK TSGLL+VAK+ + L Q + +R+Y+S+ G +
Sbjct: 126 --------GFRPGIVHRIDKDTSGLLMVAKNAKARESLEAQLAQKSNKRIYLSIVHGNFA 177
Query: 178 QSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETG 237
+ SG ++ PI+R+P +R +MA + ++A + +KV+E G +L+E +LETG
Sbjct: 178 EKSGTVDAPIARNPRDRKQMAVVEN------GKNAVTHFKVLEQYP--GYSLIECQLETG 229
Query: 238 RTHQ 241
RTHQ
Sbjct: 230 RTHQ 233
>gi|126700216|ref|YP_001089113.1| pseudouridylate synthase, RluC/RluD family [Clostridium difficile
630]
gi|115251653|emb|CAJ69486.1| putative pseudouridylate synthase, RluC/RluD family [Clostridium
difficile 630]
Length = 303
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 125/213 (58%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK D + I E + L +DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNG
Sbjct: 56 VKEEDNIVIEIPEPKVLEVLPQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNG 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
IL+HC ++ SSI+G IRPGIVHR+DK TSGLL++AK+
Sbjct: 116 ILYHC----------------------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAKN 152
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
++H L+EQ K HTI R Y + GV + ++ PI R+P +R++MA +
Sbjct: 153 NYAHNFLAEQLKEHTITREYEFICYGVVKEDKITVDKPIGRNPKDRLKMAVV------KD 206
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + ++V+E + RLETGRTHQ
Sbjct: 207 GKNAITHFEVVERF--DKFTHMRARLETGRTHQ 237
>gi|254423656|ref|ZP_05037374.1| pseudouridine synthase, RluA family [Synechococcus sp. PCC 7335]
gi|196191145|gb|EDX86109.1| pseudouridine synthase, RluA family [Synechococcus sp. PCC 7335]
Length = 309
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 123/213 (57%), Gaps = 28/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V GD + ++ E QP EDIPLDI+YEDD +L+VNKPA MVVHPAPG+ATGTLV+
Sbjct: 54 VTAGDYIILSVPEAQPYELTPEDIPLDILYEDDQLLIVNKPAGMVVHPAPGHATGTLVHA 113
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L +C E + + G RPGIVHRLDK T+G +VVAK
Sbjct: 114 LLFYCG----------------------EQLTGVGGVQ-RPGIVHRLDKNTTGAMVVAKT 150
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E + +L +Q + T +R Y+ + +G P G I+ PI R P +R +M+ +P +
Sbjct: 151 ETALCNLQQQIQAKTAKREYLGIVNGAPKAEQGTIDQPIGRHPKHRKKMSILPVESG--- 207
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +K +E L G L+ ++LETGRTHQ
Sbjct: 208 GRTAITHWKTVERL--GNYTLIHFQLETGRTHQ 238
>gi|414152988|ref|ZP_11409315.1| Uncharacterized RNA pseudouridine synthase ylyB [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455370|emb|CCO07217.1| Uncharacterized RNA pseudouridine synthase ylyB [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 307
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ +H +K G+ V + L+ E E+IPLDI YED +++VVNKP MVVHPA G +
Sbjct: 49 VKANHKLKAGEKVCLIVPPAAELKVEPENIPLDIYYEDSHLIVVNKPRGMVVHPADGTVS 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC +D+ S I+G +RPGIVHRLDK TSGL
Sbjct: 109 GTLVNALLYHC----------------QDL-------SGINGV-MRPGIVHRLDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++++H L++Q K T+ R Y++L + G + PI RDP +R +MA I
Sbjct: 145 LMVAKNDNAHQALAQQLKDRTVTRRYLALVHNNLKEEQGTVNAPIGRDPRDRQKMAVIER 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++K A + Y+V+E G L+E RLETGRTHQ
Sbjct: 205 NSK-----PAVTHYRVVERF--GRYTLIECRLETGRTHQ 236
>gi|452964597|gb|EME69634.1| pseudouridylate synthase, 23S RNA-specific [Magnetospirillum sp.
SO-1]
Length = 323
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 132/242 (54%), Gaps = 35/242 (14%)
Query: 7 EFNQVSVLALF----LSMDKLSVSH---NVKGGDMVNCTISELQPLRAEAEDIPLDIVYE 59
E ++ V AL + +D ++S VK G + P E +DI L +VYE
Sbjct: 29 ELSRTRVKALIEDGRVGLDGTTISDPSLRVKPGQCFVVEVPPDAPAEPEPQDIALTVVYE 88
Query: 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFS 119
D++++V++KPA MVVHPAPGN TLVN +L HC E
Sbjct: 89 DEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCG----------------------ESL 126
Query: 120 SSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQS 179
+ I G RPGIVHR+DK TSGLLV AK + +H L+ QF HT+ER Y +L G PS
Sbjct: 127 AGIGGVR-RPGIVHRIDKDTSGLLVAAKTDAAHRGLAAQFAAHTLERAYWALVWGTPSPR 185
Query: 180 SGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRT 239
G IE I R+PN+R +MA + K A +RY+V++ AGG +LVE RL TGRT
Sbjct: 186 QGEIEGNIGRNPNDRKKMAVVRSGGK-----PALTRYRVLKSFAGGAVSLVECRLATGRT 240
Query: 240 HQ 241
HQ
Sbjct: 241 HQ 242
>gi|315121810|ref|YP_004062299.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495212|gb|ADR51811.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 340
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 129/223 (57%), Gaps = 32/223 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S V G+ + +LQ L AE+IPLDI+YEDD+++V+NK A +VVHPAPGN TGTL
Sbjct: 62 SRKVVPGESFFIDVPQLQQLNIAAENIPLDILYEDDDIIVINKQAGLVVHPAPGNWTGTL 121
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC+ S I+G RPGIVHRLDK T+G +VV
Sbjct: 122 VNALLHHCN----------------------NNLSGINGIK-RPGIVHRLDKDTTGTMVV 158
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++ +H LSEQF H ++R Y ++ GVPS SG I P+ R +NR+R A
Sbjct: 159 AKNDIAHQRLSEQFADHGLHMGLKRSYYAMVWGVPSPDSGTINAPLGRCKSNRLRRAVKR 218
Query: 202 GSNKHGQARHAASRYKVIEIL---AGGGSALVEWRLETGRTHQ 241
+K G A +RY+ +EI + ++L+ LETGRTHQ
Sbjct: 219 IEDKTGD--RAVTRYQTVEIYNKNSNFAASLLRCDLETGRTHQ 259
>gi|297583963|ref|YP_003699743.1| RluA family pseudouridine synthase [Bacillus selenitireducens
MLS10]
gi|297142420|gb|ADH99177.1| pseudouridine synthase, RluA family [Bacillus selenitireducens
MLS10]
Length = 307
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K GD+V + E++ L AED+ LDIVYED +V+VVNKPA MVVHPAPG+ +GTL
Sbjct: 50 NYKLKIGDVVRVKVPEVEELEITAEDLDLDIVYEDQDVIVVNKPAGMVVHPAPGHPSGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+++HC +D+ S I+G + RPGIVHR+DK TSGLL+V
Sbjct: 110 VNGLMYHC----------------QDL-------SGINGVA-RPGIVHRIDKDTSGLLMV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L +Q K T R Y +L G G ++ PI RDP +R +M +
Sbjct: 146 AKHDKAHESLVDQLKNKTTIRQYEALVVGTIPHEKGTVDAPIGRDPQDRQKMTVTEEN-- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
AR A + ++VIE + G L E LETGRTHQ
Sbjct: 204 ---ARDAVTHFQVIERMNGYTHVLCE--LETGRTHQ 234
>gi|403383409|ref|ZP_10925466.1| RNA pseudouridine synthase ylyB [Kurthia sp. JC30]
Length = 306
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 132/226 (58%), Gaps = 31/226 (13%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
L ++ + + V + V+ GD + + +PL AED+ L+IVYED++VLVVNKP MVVH
Sbjct: 42 LLVNGETVKVKYKVQDGDRIEVNAPDPEPLEILAEDLNLEIVYEDEDVLVVNKPKGMVVH 101
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPG+A+GTLVNG++HHC+ D+ S I+G +RPGIVHR+
Sbjct: 102 PAPGHASGTLVNGLMHHCT----------------DL-------SGINGI-MRPGIVHRI 137
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK++ +H L +Q T+ R Y +L G G I+ PI RD +R
Sbjct: 138 DKDTSGLLMVAKNDLAHEGLVQQLVDKTVTRRYTALVHGHIPHDKGTIDAPIGRDQKDRQ 197
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+M + +HA + ++VI G LV+ RLETGRTHQ
Sbjct: 198 KMGVV------DNGKHAVTHFQVIGRF-GTDYTLVQCRLETGRTHQ 236
>gi|335357350|ref|ZP_08549220.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
animalis KCTC 3501]
Length = 301
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 127/216 (58%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD ++ T E++ L E E+I LDIVYEDD+V+VV+KP MVVHPAPG+ TL
Sbjct: 48 KYKVKAGDKISLTEPEIKELVVEPENIALDIVYEDDDVIVVDKPQGMVVHPAPGHEDHTL 107
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC L S+I+G + RPGIVHR+DK TSGLL+V
Sbjct: 108 VNALLYHCPL------------------------STING-TYRPGIVHRIDKDTSGLLMV 142
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L++Q K T R YI+L G + SG I+ P++R P +R + A + G
Sbjct: 143 AKNDQAHRSLAKQLKDKTNLREYIALVHGRIKEDSGTIKAPLARSPKDRKKQAVVSG--- 199
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV++ LV RLETGRTHQ
Sbjct: 200 ---GRDAVTHFKVLKRYQ--DYTLVSCRLETGRTHQ 230
>gi|429727610|ref|ZP_19262374.1| pseudouridine synthase, RluA family [Peptostreptococcus anaerobius
VPI 4330]
gi|429151914|gb|EKX94755.1| pseudouridine synthase, RluA family [Peptostreptococcus anaerobius
VPI 4330]
Length = 320
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 124/216 (57%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK GD + + E Q L E +DI +DIVYEDD ++VVNK MVVHPAPGN TL
Sbjct: 68 SYKVKTGDKIEVNMPEPQALEIEPQDIGIDIVYEDDYLMVVNKQQGMVVHPAPGNPDRTL 127
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + SSI+G IRPGIVHR+DK TSGLLV+
Sbjct: 128 VNAVLFHCG----------------------DRLSSINGV-IRPGIVHRIDKNTSGLLVI 164
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AKD +H LS+QFK+H+I R Y + G I+ PI R+P +R++MA + + K
Sbjct: 165 AKDNQTHQGLSDQFKVHSITREYEMICIGNVEWQEKTIDGPIGRNPKDRMKMAIVKTNGK 224
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + ++++E G + + RLETGRTHQ
Sbjct: 225 -----RAVTHFRLVE--NYDGYSHLSARLETGRTHQ 253
>gi|354582313|ref|ZP_09001215.1| pseudouridine synthase, RluA family [Paenibacillus lactis 154]
gi|353199712|gb|EHB65174.1| pseudouridine synthase, RluA family [Paenibacillus lactis 154]
Length = 322
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 130/219 (59%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ V GD + TI + EDIPLDI YED +V+VVNKP MVVHPAPG+ +
Sbjct: 68 VKANYKVSQGDRIALTIPAPSVVEIVPEDIPLDIAYEDRDVIVVNKPRGMVVHPAPGHVS 127
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN ++HHC +D+ S I+G +RPGIVHR+DK T+GL
Sbjct: 128 GTLVNALMHHC----------------KDL-------SGING-ELRPGIVHRIDKDTTGL 163
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
++ AK++ +HA L+ Q K H++ R Y++L G S G I+ PI RDP +R +M +
Sbjct: 164 IMAAKNDKAHASLAAQLKEHSVNRRYLALVHGNISHDQGTIDAPIGRDPQDR-KMYTVTD 222
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N ++HA + + V+E G +L+E +LETGRTHQ
Sbjct: 223 RN----SKHAVTHFTVVERF--GDYSLLELKLETGRTHQ 255
>gi|255528132|ref|ZP_05394960.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
gi|296186658|ref|ZP_06855060.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
gi|255508173|gb|EET84585.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
gi|296048695|gb|EFG88127.1| pseudouridine synthase, RluA family [Clostridium carboxidivorans
P7]
Length = 305
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D + TI + L E EDIPLDIVYED +V+VVNKP MVVHPA G TGTL
Sbjct: 52 NYKLKIKDKILITIPDPVGLDIEPEDIPLDIVYEDSDVIVVNKPQGMVVHPASGVYTGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HCS D+S I+G + RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLNHCS----------------DLS-------GINGVT-RPGIVHRIDKDTSGILVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH L+EQ K H++ R Y +L G+ + G I+ P+ R P RI+++ I
Sbjct: 148 AKNDKSHNKLAEQLKDHSMTRAYTALVEGILKEDEGTIDKPLGRHPVERIKISVIK---- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + Y+V+E + LVE LETGRTHQ
Sbjct: 204 --DGKRAVTHYRVLERFK--SNTLVECVLETGRTHQ 235
>gi|306520956|ref|ZP_07407303.1| putative pseudouridylate synthase [Clostridium difficile QCD-32g58]
Length = 453
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 125/213 (58%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK D + I E + L +DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNG
Sbjct: 206 VKEEDNIVIEIPEPKVLEVLPQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNG 265
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
IL+HC ++ SSI+G IRPGIVHR+DK TSGLL++AK+
Sbjct: 266 ILYHC----------------------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAKN 302
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
++H L+EQ K HTI R Y + GV + ++ PI R+P +R++MA +
Sbjct: 303 NYAHNFLAEQLKEHTITREYEFICYGVVKEDKITVDKPIGRNPKDRLKMAVVK------D 356
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + ++V+E + RLETGRTHQ
Sbjct: 357 GKNAITHFEVVERFDKFTH--MRARLETGRTHQ 387
>gi|428208374|ref|YP_007092727.1| ribosomal large subunit pseudouridine synthase D [Chroococcidiopsis
thermalis PCC 7203]
gi|428010295|gb|AFY88858.1| ribosomal large subunit pseudouridine synthase D [Chroococcidiopsis
thermalis PCC 7203]
Length = 311
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 125/214 (58%), Gaps = 31/214 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK GD + I +QPL + E IPLDI+YEDD++L++NKPA +VVHPAPG+A GTLVN
Sbjct: 54 VKTGDRIRIEIPAVQPLELKPEAIPLDILYEDDSLLIINKPAGLVVHPAPGHADGTLVNA 113
Query: 89 ILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HC +LP + G RPGIVHRLDK T+G + +AK
Sbjct: 114 LLAHCPNLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ + HL Q K T R Y+ + G P +G +++PI R P +R +MA +P K G
Sbjct: 149 TDLAQQHLQAQLKAKTARREYLGIIYGAPRSPNGTVDLPIGRHPTDRKKMAIVP-VEKGG 207
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+A A + ++V E L G LV ++LETGRTHQ
Sbjct: 208 RA--AITLWQVKERL--GNYTLVHFQLETGRTHQ 237
>gi|289422301|ref|ZP_06424151.1| ribosomal large subunit pseudouridine synthase D
[Peptostreptococcus anaerobius 653-L]
gi|289157246|gb|EFD05861.1| ribosomal large subunit pseudouridine synthase D
[Peptostreptococcus anaerobius 653-L]
Length = 320
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 124/216 (57%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK GD + + E Q L E +DI +DIVYEDD ++VVNK MVVHPAPGN TL
Sbjct: 68 SYKVKTGDKIEVNMPEPQALEIEPQDIGIDIVYEDDYLMVVNKQQGMVVHPAPGNPDRTL 127
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + SSI+G IRPGIVHR+DK TSGLLV+
Sbjct: 128 VNAVLFHCG----------------------DRLSSINGV-IRPGIVHRIDKNTSGLLVI 164
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AKD +H LS+QFK+H+I R Y + G I+ PI R+P +R++MA + + K
Sbjct: 165 AKDNQTHQGLSDQFKVHSITREYEMICIGNVEWQEKTIDGPIGRNPKDRMKMAIVKTNGK 224
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + ++++E G + + RLETGRTHQ
Sbjct: 225 -----RAVTHFRLVE--NYDGYSHLSARLETGRTHQ 253
>gi|254478004|ref|ZP_05091388.1| pseudouridine synthase, RluA family [Carboxydibrachium pacificum
DSM 12653]
gi|214036008|gb|EEB76698.1| pseudouridine synthase, RluA family [Carboxydibrachium pacificum
DSM 12653]
Length = 309
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK D + I E + + E+IPLDI+YED++++V+NKP MVVHPA GN +GTL
Sbjct: 54 SYKVKEDDEIVVNIKEAEKIEVVPENIPLDILYEDEDIIVINKPQGMVVHPAAGNYSGTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC + S I+G +RPGIVHRLDK TSG++VV
Sbjct: 114 VNALLYHC-----------------------KNLSGINGI-LRPGIVHRLDKDTSGVMVV 149
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K ++ + YI++ GV + G++E PI R P +R RMA +
Sbjct: 150 AKNDKAHMSLSNQIKERSVLKKYIAIVEGVIKEEEGKVEAPIGRHPVDRKRMAVVQ---- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R+A + YKV+E + VE ++TGRTHQ
Sbjct: 206 --EGRYALTLYKVLERFK--NNTFVEATIKTGRTHQ 237
>gi|346314172|ref|ZP_08855693.1| hypothetical protein HMPREF9022_01350 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906530|gb|EGX76254.1| hypothetical protein HMPREF9022_01350 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 304
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 135/227 (59%), Gaps = 31/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
++ ++ + + ++ VK D + ++ + A E + LD+ YED++V+V+NKP ++VV
Sbjct: 40 SILVNQNAVKANYKVKADDCITAVFNDEMEMEARPEKMELDVRYEDEDVIVINKPKNIVV 99
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPA GN +GTLVNG+L+HC +D+S I+G ++RPGIVHR
Sbjct: 100 HPAAGNQSGTLVNGLLYHC----------------KDLS-------GING-TLRPGIVHR 135
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK T+GLL+VAK++ +HA LS+Q + T+ R+Y +L GV G I+ PI RD +R
Sbjct: 136 IDKDTTGLLIVAKNDLAHASLSKQLQSKTVNRLYYALVHGVIQHDFGTIDAPIGRDVKDR 195
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA ++K A + ++VIE LVE RLETGRTHQ
Sbjct: 196 QKMAVTATNSK-----DARTHFQVIERFE--NYTLVECRLETGRTHQ 235
>gi|260887804|ref|ZP_05899067.1| ribosomal large subunit pseudouridine synthase D [Selenomonas
sputigena ATCC 35185]
gi|330838700|ref|YP_004413280.1| pseudouridine synthase, RluA family [Selenomonas sputigena ATCC
35185]
gi|260862480|gb|EEX76980.1| ribosomal large subunit pseudouridine synthase D [Selenomonas
sputigena ATCC 35185]
gi|329746464|gb|AEB99820.1| pseudouridine synthase, RluA family [Selenomonas sputigena ATCC
35185]
Length = 301
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 123/214 (57%), Gaps = 32/214 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
++ GD V + E + L EDIPLDI+YED +V+V+NK MVVHPA G A GTLVN
Sbjct: 53 KLREGDAVETELPEARELEILPEDIPLDILYEDSDVIVINKARGMVVHPAAGAADGTLVN 112
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC ED+S I+G IRPGIVHRLDK TSG++V AK
Sbjct: 113 ALLHHC----------------EDLS-------GINGV-IRPGIVHRLDKDTSGVMVAAK 148
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
++ +H L+EQ + T +R+Y ++ G ++ G I PI R P R +MA +PG
Sbjct: 149 NDRAHVDLAEQIREKTAQRIYRAIVCGTIAEDRGEIRAPIGRHPTERKKMAVVPG----- 203
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E LVE RL+TGRTHQ
Sbjct: 204 -GKEATTLFRVVERFP--AHTLVECRLKTGRTHQ 234
>gi|255656576|ref|ZP_05401985.1| putative pseudouridylate synthase [Clostridium difficile QCD-23m63]
gi|296449972|ref|ZP_06891736.1| ribosomal large subunit pseudouridine synthase D [Clostridium
difficile NAP08]
gi|296878353|ref|ZP_06902361.1| ribosomal large subunit pseudouridine synthase D [Clostridium
difficile NAP07]
gi|296261242|gb|EFH08073.1| ribosomal large subunit pseudouridine synthase D [Clostridium
difficile NAP08]
gi|296430651|gb|EFH16490.1| ribosomal large subunit pseudouridine synthase D [Clostridium
difficile NAP07]
Length = 315
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 126/213 (59%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK D + I E + L +DIP+DIVYEDD+VL++NKP MVVHPAPGN TLVNG
Sbjct: 68 VKEEDNIVIEIPEPKVLEVVPQDIPIDIVYEDDDVLIINKPQDMVVHPAPGNYENTLVNG 127
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
IL+HC ++ SSI+G IRPGIVHR+DK TSGLL++AK+
Sbjct: 128 ILYHC----------------------KDKLSSINGV-IRPGIVHRIDKDTSGLLMIAKN 164
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
++H L+EQ K HTI R Y + GV ++ ++ PI R+P +R++MA +
Sbjct: 165 NYAHNFLAEQLKEHTITREYEFICYGVVKENKITVDKPIGRNPKDRLKMAVV------KD 218
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + ++V+E + +LETGRTHQ
Sbjct: 219 GKNAITHFEVVERF--DKFTHMRAKLETGRTHQ 249
>gi|253576153|ref|ZP_04853485.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251844496|gb|EES72512.1| pseudouridine synthase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 315
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD + I E +P EDIPL+I YED +V+VVNKP MVVHPAPG+ +
Sbjct: 61 VKANYKLAEGDRIVLVIPEAEPTEIVPEDIPLEIYYEDSDVIVVNKPRGMVVHPAPGHTS 120
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN ++ HC +D+S I+G +RPGIVHR+DK TSGL
Sbjct: 121 GTLVNALMFHC----------------KDLS-------GING-ELRPGIVHRIDKDTSGL 156
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
++ AK++ +HA L+ Q K HT+ R Y +L G S G ++ PI RDP++R +M +
Sbjct: 157 IMAAKNDKAHASLAAQLKAHTVTRKYYALVHGNVSHDQGTVDAPIGRDPHDR-KMYTVIE 215
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N ++HA + ++V+E G L+E +LETGRTHQ
Sbjct: 216 RN----SKHAVTHFQVVERF--GDYTLLELKLETGRTHQ 248
>gi|363899246|ref|ZP_09325756.1| hypothetical protein HMPREF9625_00416 [Oribacterium sp. ACB1]
gi|395209641|ref|ZP_10398735.1| pseudouridine synthase, RluA family [Oribacterium sp. ACB8]
gi|361959083|gb|EHL12379.1| hypothetical protein HMPREF9625_00416 [Oribacterium sp. ACB1]
gi|394705272|gb|EJF12801.1| pseudouridine synthase, RluA family [Oribacterium sp. ACB8]
Length = 306
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 129/220 (58%), Gaps = 30/220 (13%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K S +K GD ++ E + L + EDIPLDIV+ED+++LVVNKP MVVHPAPG+
Sbjct: 46 KAKASIKLKSGDHISLIEKEAEVLDVKGEDIPLDIVFEDEDLLVVNKPRGMVVHPAPGHY 105
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
TGTLVN ++ H SSI+G +RPGI+HR+DK TSG
Sbjct: 106 TGTLVNAVIAHSGTSL----------------------SSINGV-LRPGIIHRIDKDTSG 142
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL++ K++ SH L++Q + HTI R Y +L G + SG I PI RD +R R A
Sbjct: 143 LLLICKNDLSHKALAKQLEEHTITRRYHALCFGRLKEESGTISAPIGRDEKDRKRQAI-- 200
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ KHG + A + YK++E ++LVE RLETGRTHQ
Sbjct: 201 -NYKHG--KEAVTHYKLLESFE--NASLVECRLETGRTHQ 235
>gi|297544813|ref|YP_003677115.1| RluA family pseudouridine synthase [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842588|gb|ADH61104.1| pseudouridine synthase, RluA family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 305
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 130/225 (57%), Gaps = 32/225 (14%)
Query: 17 FLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 76
F++ + S+ VK D V I E + + E+IPLDI+YEDD+++V+NKP MVVHP
Sbjct: 45 FVNGKTVKPSYKVKENDKVVVNIPEAEKIDVLPENIPLDILYEDDDIIVINKPQGMVVHP 104
Query: 77 APGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLD 136
APGN +GTLVN +L+HC + S I+G +RPGIVHRLD
Sbjct: 105 APGNYSGTLVNALLYHC-----------------------KNLSGINGI-LRPGIVHRLD 140
Query: 137 KGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIR 196
K TSG++VVAK++ +H LS Q K ++ + Y+++ GV +IE PI R P +R +
Sbjct: 141 KDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKNEEEKIEAPIGRHPVDRKK 200
Query: 197 MAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
MA I R+A + YKV+E + L+E ++TGRTHQ
Sbjct: 201 MAVIE------DGRYALTLYKVLERFK--ENTLIEAVIKTGRTHQ 237
>gi|409402118|ref|ZP_11251731.1| ribosomal large subunit pseudouridine synthase D [Acidocella sp.
MX-AZ02]
gi|409129251|gb|EKM99112.1| ribosomal large subunit pseudouridine synthase D [Acidocella sp.
MX-AZ02]
Length = 324
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 124/216 (57%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S V+ G + + P + E +PLDI+YEDD +L+++K A MVVHPAPGN GTL
Sbjct: 56 SETVQPGTLYQLALPAAAPALPQPESLPLDILYEDDALLILDKAAGMVVHPAPGNPDGTL 115
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC E + I G RPGIVHRLDK TSGL+VV
Sbjct: 116 VNALIAHCG----------------------ESLTGIGGER-RPGIVHRLDKDTSGLMVV 152
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E + LS F IER Y++L G+P+ + GRIE I RDP +R RMA + + K
Sbjct: 153 AKTELALTRLSATFAARDIERRYLALCWGLPNPAKGRIEGDIGRDPKDRKRMAVVKSNGK 212
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HAA+ Y+V+E AG ++L+ RLETGRTHQ
Sbjct: 213 -----HAATNYQVLE-QAGLAASLIACRLETGRTHQ 242
>gi|409351550|ref|ZP_11234218.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
gi|407876703|emb|CCK86276.1| Pseudouridine synthase [Lactobacillus equicursoris CIP 110162]
Length = 302
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 141/244 (57%), Gaps = 36/244 (14%)
Query: 2 ELVELEFNQVSVLA----LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIV 57
E ++L +++ LA + ++ K VS+ V+ GD + I L+PL E E+IPLDIV
Sbjct: 22 ERIDLSRSRIKDLAQAGQVLVNGKKTKVSYKVEAGDQIEVNILPLEPLDLEPENIPLDIV 81
Query: 58 YEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEE 117
YEDD+V+VVNKP MVVHPA G+ TLVN +L+H D++D E
Sbjct: 82 YEDDDVIVVNKPQGMVVHPAAGHPNHTLVNALLYHT----------------RDLADSPE 125
Query: 118 FSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPS 177
RPGIVHR+DK TSGLL+VAK+ + L Q + +R+Y+++ G +
Sbjct: 126 --------GFRPGIVHRIDKDTSGLLMVAKNAKARESLEAQLAQKSNKRIYLAIVHGNFA 177
Query: 178 QSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETG 237
+ SG ++ PI+R+P +R +MA + ++A + +KV+E G +L+E +LETG
Sbjct: 178 EKSGTVDAPIARNPRDRKQMAVVEN------GKNAVTHFKVLEQYP--GYSLIECQLETG 229
Query: 238 RTHQ 241
RTHQ
Sbjct: 230 RTHQ 233
>gi|410724119|ref|ZP_11363318.1| pseudouridine synthase, RluA family [Clostridium sp. Maddingley
MBC34-26]
gi|410602405|gb|EKQ56885.1| pseudouridine synthase, RluA family [Clostridium sp. Maddingley
MBC34-26]
Length = 305
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 130/216 (60%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + ++SE + L + EDI L+I+YED +++VVNK MVVHPAPGN GTL
Sbjct: 52 NYKVKTKDEIEISLSEPEVLNVDPEDISLNILYEDKDIVVVNKEQGMVVHPAPGNYNGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC +D+S SI+G +RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLFHC----------------KDLS-------SINGI-VRPGIVHRIDKDTSGVLVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LSEQ K H+++R Y +L G G I+ P++R+ +R+++ + G K
Sbjct: 148 AKNDEAHNKLSEQLKDHSMKREYYALVEGRIKNDKGTIDKPLARNKKDRLKIGIVEGGKK 207
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+V+E G L++ +LETGRTHQ
Sbjct: 208 ------AVTHYEVLE--RYNGYTLIKCKLETGRTHQ 235
>gi|403069260|ref|ZP_10910592.1| hypothetical protein ONdio_06665 [Oceanobacillus sp. Ndiop]
Length = 302
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 133/233 (57%), Gaps = 32/233 (13%)
Query: 9 NQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 68
N +S + ++ + ++ + GD + +I E+ L +AEDIPL IVYED ++LVVNK
Sbjct: 34 NWISKDHVLVNGEPAKANYKCQAGDELKWSIPEVVELNIQAEDIPLSIVYEDSDLLVVNK 93
Query: 69 PAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 128
P MVVHP+ G+ +GTLVN +L+HC +D+S I+G R
Sbjct: 94 PKGMVVHPSAGHQSGTLVNALLYHC----------------QDLS-------GINGVE-R 129
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 188
PGIVHR+DK TSGLLVVAK++H+H HLSEQ I+R Y ++ G S SG I+ PI
Sbjct: 130 PGIVHRIDKDTSGLLVVAKNDHTHTHLSEQLSNKDIKRKYEAIVHGEISHESGLIDAPIG 189
Query: 189 RDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RDP +R +M + + A + + VIE VE +LETGRTHQ
Sbjct: 190 RDPKDRQKMGVV------DNGKPAVTHFNVIEHFP--DFTHVECQLETGRTHQ 234
>gi|335045072|ref|ZP_08538095.1| pseudouridine synthase, RluA family [Oribacterium sp. oral taxon
108 str. F0425]
gi|333758858|gb|EGL36415.1| pseudouridine synthase, RluA family [Oribacterium sp. oral taxon
108 str. F0425]
Length = 304
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 130/216 (60%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD + E +PL + E+IPL+IVYEDD+++V+NKP MVVHPAPG+ +GTL
Sbjct: 50 STKIKTGDRIELFEKEPEPLAVKGEEIPLEIVYEDDDLMVINKPRGMVVHPAPGHTSGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L H E SSI+G +RPGIVHR+DK TSGL++V
Sbjct: 110 VNAVLSHAG----------------------ESLSSINGV-LRPGIVHRIDKDTSGLILV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
K++ SH L++Q + H+I R Y ++ SG + G + PI RD NR + A + K
Sbjct: 147 CKNDFSHKALAKQLEEHSITRRYHAICSGRLKEEQGTVSAPIGRDEKNRKQQAI---NYK 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HG + A + Y+++E L ++L+E RLETGRTHQ
Sbjct: 204 HG--KEAITHYRLLENLQ--NASLLECRLETGRTHQ 235
>gi|291550385|emb|CBL26647.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus
torques L2-14]
Length = 304
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 129/224 (57%), Gaps = 32/224 (14%)
Query: 20 MDKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPA 77
+++L V N K GD + I + +PL + E+IPLDI+YEDD++LVVNKP MVVHPA
Sbjct: 42 VNQLPVKANYKLTTGDTIILQIPDPEPLDIQPENIPLDILYEDDDILVVNKPKGMVVHPA 101
Query: 78 PGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDK 137
PG+ + TLVN +L+HC E S I+G IRPGIVHR+D
Sbjct: 102 PGHYSHTLVNAVLYHCG----------------------ENLSGINGV-IRPGIVHRIDM 138
Query: 138 GTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRM 197
T+G L++ K++ +H L+EQ K H+I R Y S+ G + +G + PI R P +R +M
Sbjct: 139 NTTGSLLICKNDKAHQILAEQLKEHSITRKYHSIVHGNLKEDTGTVNAPIGRHPTDRKKM 198
Query: 198 AAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
S K RHA + Y+V+E G +E +LETGRTHQ
Sbjct: 199 -----STKAPNGRHAVTHYRVLERF--GNFTYIECQLETGRTHQ 235
>gi|312898193|ref|ZP_07757584.1| pseudouridine synthase, RluA family [Megasphaera micronuciformis
F0359]
gi|310620690|gb|EFQ04259.1| pseudouridine synthase, RluA family [Megasphaera micronuciformis
F0359]
Length = 306
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 125/219 (57%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ V GD + E + L EAE+IPLDIVYED ++++VNK MVVHPA GN
Sbjct: 48 LKANYRVAEGDEIVIEKDEAEDLTVEAENIPLDIVYEDKDIIIVNKARGMVVHPAAGNPN 107
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L HC S I+G IRPGIVHRLDK TSGL
Sbjct: 108 GTLVNALLWHCGGEL----------------------SGINGV-IRPGIVHRLDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
+V AK + +H L+EQ K HT R Y++L G ++ GRI+ P+ R P +R++MA
Sbjct: 145 MVAAKTDAAHKSLAEQIKSHTARRTYVALVHGNIVEAKGRIDAPLGRHPKDRVKMAV--- 201
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ K G + A + + V+E G LV+ RLETGRTHQ
Sbjct: 202 NMKDG--KDAITHFTVLERF--GNYTLVQCRLETGRTHQ 236
>gi|443315971|ref|ZP_21045436.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 6406]
gi|442784409|gb|ELR94284.1| pseudouridine synthase, RluA family [Leptolyngbya sp. PCC 6406]
Length = 306
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ GD++ T+ E QPL E IPLDI+YEDD++++VNKPA +VVHPAPGN +GTLVN
Sbjct: 51 VQAGDIICLTLPEAQPLELTPESIPLDILYEDDHLIIVNKPAGLVVHPAPGNRSGTLVNA 110
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC E I G RPGIVHRLDK T+G +VVAK
Sbjct: 111 LLAHCG----------------------EGLLGIGGVQ-RPGIVHRLDKDTTGAIVVAKT 147
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L Q K T R Y+ + G P + G ++ P+ RDP++R R A + + + G
Sbjct: 148 DLAHQDLQAQMKAKTARREYLGVVYGAPREQGGTVDAPLGRDPSDRKRQAIV--TVEKG- 204
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V E + G ++ +RLETGRTHQ
Sbjct: 205 GRNAVTHWQVQERI--GNFTVMAFRLETGRTHQ 235
>gi|313901079|ref|ZP_07834567.1| pseudouridine synthase, RluA family [Clostridium sp. HGF2]
gi|373121536|ref|ZP_09535404.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
21_3]
gi|312954037|gb|EFR35717.1| pseudouridine synthase, RluA family [Clostridium sp. HGF2]
gi|371665554|gb|EHO30719.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
21_3]
Length = 304
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 135/227 (59%), Gaps = 31/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
++ ++ + + ++ VK D + ++ + A E + LD+ YED++V+V+NKP ++VV
Sbjct: 40 SILVNQNAVKANYKVKADDCITAVFNDEMEMEARPEKMELDVRYEDEDVIVINKPKNIVV 99
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPA GN +GTLVNG+L+HC +D+ S I+G ++RPGIVHR
Sbjct: 100 HPAAGNQSGTLVNGLLYHC----------------KDL-------SGING-TLRPGIVHR 135
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK T+GLL++AK++ +HA LS+Q + T+ R+Y +L GV G I+ PI RD +R
Sbjct: 136 IDKDTTGLLIIAKNDLAHASLSKQLQSKTVNRLYYALVHGVIQHDFGTIDAPIGRDVKDR 195
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA ++K A + ++VIE LVE RLETGRTHQ
Sbjct: 196 QKMAVTATNSK-----DARTHFQVIERFE--NYTLVECRLETGRTHQ 235
>gi|168186171|ref|ZP_02620806.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Eklund]
gi|169295643|gb|EDS77776.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum C str. Eklund]
Length = 304
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 136/226 (60%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ ++ +K GD V I E + + + EDI L+I+YED++V+V++KP MVVH
Sbjct: 42 VFVNNSSKKSNYKLKIGDYVEIKIKEDEKINIKPEDIKLNIIYEDEDVIVIDKPQGMVVH 101
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
P GN +GTLVNG+L+HC + SSI+G +RPGIVHR+
Sbjct: 102 PGAGNYSGTLVNGLLYHC-----------------------DSLSSING-DVRPGIVHRI 137
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSG+LVVAK++ +H LSEQ K H+++R YI+L G+ G I+ P+ R+P +RI
Sbjct: 138 DKDTSGVLVVAKNDSAHIILSEQLKEHSMKREYIALVEGIIKNDEGIIDAPLGRNPKDRI 197
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++G++ A + Y V+ + LV+ LETGRTHQ
Sbjct: 198 KRAVV----RNGKS--AVTHYNVLRRF--NKNTLVKCILETGRTHQ 235
>gi|222054127|ref|YP_002536489.1| RluA family pseudouridine synthase [Geobacter daltonii FRC-32]
gi|221563416|gb|ACM19388.1| pseudouridine synthase, RluA family [Geobacter daltonii FRC-32]
Length = 319
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +KGG+ + + E+IPL+I+YED +++VVNK A MVVHP GN+ GTL
Sbjct: 52 SLKLKGGEQLKIAVPPPVEAGPAPENIPLEILYEDRDLVVVNKGAGMVVHPGAGNSGGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC+ D+S G +RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLGHCT----------------DLSG--------IGGELRPGIVHRIDKDTSGILVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH LSEQF+ H+I+R+YI++ G P SGR+E I R P +R RM+ G +
Sbjct: 148 AKNDASHLALSEQFREHSIKRIYIAIVYGSPKTDSGRLESIIGRHPVDRKRMS---GKAR 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HG +HA + ++VI G L+ RLETGRTHQ
Sbjct: 205 HG--KHAVTHWRVIGRYP--GMCLIRLRLETGRTHQ 236
>gi|422327552|ref|ZP_16408579.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
6_1_45]
gi|371663392|gb|EHO28582.1| RluA family pseudouridine synthase [Erysipelotrichaceae bacterium
6_1_45]
Length = 304
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 135/227 (59%), Gaps = 31/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
++ ++ + + ++ VK D + ++ + A E + LD+ YED++V+V+NKP ++VV
Sbjct: 40 SILVNQNAVKANYKVKADDCITAVFNDEMEMEARPEKMELDVRYEDEDVIVINKPKNIVV 99
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPA GN +GTLVNG+L+HC +D+ S I+G ++RPGIVHR
Sbjct: 100 HPAAGNQSGTLVNGLLYHC----------------KDL-------SGING-TLRPGIVHR 135
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK T+GLL++AK++ +HA LS+Q + T+ R+Y +L GV G I+ PI RD +R
Sbjct: 136 IDKDTTGLLIIAKNDLAHASLSKQLQSKTVNRLYYALVHGVIQHDFGTIDAPIGRDVKDR 195
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA ++K A + ++VIE LVE RLETGRTHQ
Sbjct: 196 QKMAVTATNSK-----DARTHFQVIERFE--NYTLVECRLETGRTHQ 235
>gi|363897267|ref|ZP_09323806.1| hypothetical protein HMPREF9624_00368 [Oribacterium sp. ACB7]
gi|361958764|gb|EHL12061.1| hypothetical protein HMPREF9624_00368 [Oribacterium sp. ACB7]
Length = 304
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 130/216 (60%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD + E +PL + E+IPL+IVYEDD+++V+NKP MVVHPAPG+ +GTL
Sbjct: 50 STKIKTGDRIELFEKEPEPLAVKGEEIPLEIVYEDDDLMVINKPRGMVVHPAPGHTSGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L H E SSI+G +RPGIVHR+DK TSGL++V
Sbjct: 110 VNAVLSHAG----------------------ESLSSINGV-LRPGIVHRIDKDTSGLILV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
K++ SH L++Q + H+I R Y ++ SG + G + PI RD NR + A + K
Sbjct: 147 CKNDFSHKALAKQLEEHSITRRYHAICSGRLKEEQGTVSAPIGRDEKNRKQQAI---NYK 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HG + A + Y+++E L ++L+E RLETGRTHQ
Sbjct: 204 HG--KEAITHYRLLENLQ--NASLLECRLETGRTHQ 235
>gi|428211292|ref|YP_007084436.1| ribosomal large subunit pseudouridine synthase D [Oscillatoria
acuminata PCC 6304]
gi|427999673|gb|AFY80516.1| ribosomal large subunit pseudouridine synthase D [Oscillatoria
acuminata PCC 6304]
Length = 311
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 125/213 (58%), Gaps = 29/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ GD + I +PL A +IPLDI+YEDD ++++NKPA +VVHPAPG++ TLVN
Sbjct: 57 VETGDRLCIEIPPAEPLEIGATEIPLDILYEDDCLIIINKPAGLVVHPAPGHSDDTLVNA 116
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC E S I G RPGIVHRLDK TSG +VVAK
Sbjct: 117 LLAHC-----------------------ENLSGIGGVQ-RPGIVHRLDKDTSGAIVVAKT 152
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+H+H HL Q + T R Y+ + GVP SG I+ PI+R P++R +MA +P K G
Sbjct: 153 DHAHQHLQGQIQAKTARRDYLGIIYGVPKTESGTIDAPIARHPHDRKKMAVVP-VEKGG- 210
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L G L+ ++LETGRTHQ
Sbjct: 211 -RLAVTHWQIKERL--GNYTLIHFQLETGRTHQ 240
>gi|428780052|ref|YP_007171838.1| RluA family pseudouridine synthase [Dactylococcopsis salina PCC
8305]
gi|428694331|gb|AFZ50481.1| pseudouridine synthase, RluA family [Dactylococcopsis salina PCC
8305]
Length = 310
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 131/225 (58%), Gaps = 34/225 (15%)
Query: 17 FLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHP 76
+S DK + V+ D + I QPL + E IPLDI+YED+++++VNKPA +VVHP
Sbjct: 49 IISKDKKQL---VQAKDEIVLWIPPPQPLDVQPESIPLDILYEDEHLIIVNKPAGLVVHP 105
Query: 77 APGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLD 136
APGN TGTLVN +L HC E + I G RPGIVHRLD
Sbjct: 106 APGNETGTLVNALLAHC-----------------------ENLAGIGGIE-RPGIVHRLD 141
Query: 137 KGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIR 196
K TSG +VVAK++ SH HL +Q + T +R Y+ L GVP +G I++PI R P +R +
Sbjct: 142 KDTSGAIVVAKNDFSHQHLQKQIQDKTAKREYLGLVYGVPKGENGSIDLPIGRHPVDRKK 201
Query: 197 MAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
MA + R+A + +++ E L G +L+ ++LETGRTHQ
Sbjct: 202 MAVVERG-----GRNAITHWQLQERL--GNYSLLAFQLETGRTHQ 239
>gi|340757887|ref|ZP_08694479.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
varium ATCC 27725]
gi|251836173|gb|EES64710.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
varium ATCC 27725]
Length = 313
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 133/215 (61%), Gaps = 31/215 (14%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ +KG +++ I E + L E+IPL+I+YED +++++NK A+MVVHPA GN GTLV
Sbjct: 58 NKLKGTEIIVVNIPEDEILNVVPENIPLNIIYEDKDIVIINKTANMVVHPAHGNYNGTLV 117
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N +L+ +D+S +I+G IRPGIVHRLDK TSG++VVA
Sbjct: 118 NALLYQI----------------KDLS-------TINGV-IRPGIVHRLDKDTSGVIVVA 153
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K++ +H+ LS+ FK T+E+ YI +T G+ SG+IE I RDP +R +M + + K
Sbjct: 154 KNDEAHSTLSDMFKEKTLEKTYICITKGIFKDKSGKIETLIGRDPKDRKKMTVVDINGK- 212
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+A S Y+V++ G +LV+ R+ETGRTHQ
Sbjct: 213 ----NAISNYEVLD--EGKNFSLVKVRIETGRTHQ 241
>gi|359412538|ref|ZP_09205003.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
gi|357171422|gb|EHI99596.1| pseudouridine synthase, RluA family [Clostridium sp. DL-VIII]
Length = 305
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D + I E + L + EDIP+ I+YED +++VVNK MVVHPAPGN GTL
Sbjct: 52 NYKIKSSDEIEVIIDEPEILNVDPEDIPIGILYEDKDIIVVNKEQGMVVHPAPGNYNGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC+ D+S SI+G +RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALLFHCT----------------DLS-------SINGV-VRPGIVHRIDKDTSGVLVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH LSEQ K H+++R Y +L G G I+ P++R +R+++ + G
Sbjct: 148 AKNDESHNKLSEQLKDHSMKREYYALVEGRIKNDKGTIDKPLARSKKDRLKIGIVEG--- 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + Y+VIE G L++ LETGRTHQ
Sbjct: 205 ---GKRAVTHYQVIE--RYNGYTLIKCVLETGRTHQ 235
>gi|421766135|ref|ZP_16202913.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
garvieae DCC43]
gi|407625505|gb|EKF52209.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
garvieae DCC43]
Length = 302
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 134/237 (56%), Gaps = 39/237 (16%)
Query: 12 SVLALFLSMDKLSV-------SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVL 64
SVL + K+SV + VK G+ V + E++ L +AEDIPLDIVYED +V
Sbjct: 28 SVLTELVREGKVSVDGETKKAKYKVKAGESVTYELPEVEVLDIQAEDIPLDIVYEDADVA 87
Query: 65 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG 124
V+NKP MVVHP+ G+A+GTLVN I++H +D+ SSI+G
Sbjct: 88 VINKPQGMVVHPSAGHASGTLVNAIMYHI----------------QDL-------SSING 124
Query: 125 ASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE 184
IRPGIVHR+DK TSGLL++AK++ +H L+ Q K T +R YI+L G G IE
Sbjct: 125 V-IRPGIVHRIDKDTSGLLMIAKNDRAHESLAAQLKAKTNKRRYIALVHGEIPNEKGTIE 183
Query: 185 VPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
PI R+P R + A + G + A + + V+E A G L+ LETGRTHQ
Sbjct: 184 APIGRNPKERKKQAVVSG------GKPAKTHFTVLERFA--GYTLLSLELETGRTHQ 232
>gi|359457301|ref|ZP_09245864.1| RluA family pseudouridine synthase [Acaryochloris sp. CCMEE 5410]
Length = 328
Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 132/218 (60%), Gaps = 24/218 (11%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S + ++ GD V I QPL E E + L+I++ED ++L+VNKPA +VVHPAPG+ATG
Sbjct: 49 SKKYALQIGDQVEVHIPAPQPLALEPELMDLEILFEDAHLLIVNKPAGLVVHPAPGHATG 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLV+G+L HC + + + S G RPGIVHRLDK T+G +
Sbjct: 109 TLVHGLLAHCQ-------------------EGQGTTLSGIGGVERPGIVHRLDKDTTGAV 149
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+VAK + +H HL Q T R Y+ L G PS +GR+E PI R ++RI+MA +P
Sbjct: 150 MVAKTDQAHQHLQAQIAAKTALREYVGLVYGRPSALTGRMEFPIGRHRSDRIKMAVVP-V 208
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ G+A A + +++++ L G ALV++RLETGRTHQ
Sbjct: 209 EQGGKA--AVTHWQILQPL--GNYALVKFRLETGRTHQ 242
>gi|427731293|ref|YP_007077530.1| RluA family pseudouridine synthase [Nostoc sp. PCC 7524]
gi|427367212|gb|AFY49933.1| pseudouridine synthase, RluA family [Nostoc sp. PCC 7524]
Length = 312
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 124/215 (57%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+VK GD + I E QPL +AE+IPLDI+YED+ +L++NKPA +VVHPAPG+ GTLVN
Sbjct: 54 SVKVGDRITLEIPEAQPLELKAENIPLDILYEDEQLLILNKPAGLVVHPAPGHPDGTLVN 113
Query: 88 GILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+L HC +LP + G RPGIVHRLDK T+G + +A
Sbjct: 114 ALLAHCPNLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIA 148
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + ++ HL Q + T R Y+ + G P SG +++PI R P +R +MA +P
Sbjct: 149 KTDIAYQHLQAQLQAKTARREYLGVVYGAPKTESGTVDLPIGRHPQDRKKMAIVPVEQG- 207
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L G L+ ++LETGRTHQ
Sbjct: 208 --GRVAITHWQIQERL--GNYTLIHFQLETGRTHQ 238
>gi|224541418|ref|ZP_03681957.1| hypothetical protein CATMIT_00580 [Catenibacterium mitsuokai DSM
15897]
gi|224525664|gb|EEF94769.1| pseudouridine synthase, RluA family [Catenibacterium mitsuokai DSM
15897]
Length = 306
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 133/216 (61%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D++ T+ + Q EDIPLDI+YED++V+VVNKP M+VHP+ G +GTL
Sbjct: 52 NYKVEEEDVIQVTLPDPQSTEIRPEDIPLDIIYEDEDVIVVNKPTGMIVHPSAGIYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC D+S +I+G + RPGIVHR+DK TSGLL+V
Sbjct: 112 VNALLYHC----------------HDLS-------AINGIT-RPGIVHRIDKETSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++++H LS+Q + H++ R Y++L GV + + GRIE PI RD +R +MA +
Sbjct: 148 AKNDNAHRSLSKQLEEHSVVRRYVALVHGVINHNVGRIEAPIGRDSKDRKKMAVTSKN-- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A+ A + +KV+E L+E RLETGRTHQ
Sbjct: 206 ---AKDAITNFKVLE--RYDDMTLIECRLETGRTHQ 236
>gi|51892381|ref|YP_075072.1| 23S rRNA pseudouridine synthase [Symbiobacterium thermophilum IAM
14863]
gi|51856070|dbj|BAD40228.1| 23S rRNA pseudouridine synthase [Symbiobacterium thermophilum IAM
14863]
Length = 304
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 124/213 (58%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V GD++ + + +P+ EDIPLDIVYED+++LVVNK +VVHPA G+ TGTLV+
Sbjct: 54 VNPGDVIVVRVPDPEPMELVPEDIPLDIVYEDEDILVVNKQRGLVVHPAAGHWTGTLVHA 113
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L + D E I G +RPGIVHRLDK T+GLLVVAK
Sbjct: 114 LL-------------DKVDDLEGI-----------GGELRPGIVHRLDKDTTGLLVVAKS 149
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E + A L EQ + H ++RVY +L G +GRIE PI R P +R RMA P +
Sbjct: 150 ERAMASLQEQIRDHMVQRVYWALVHGNSMPDTGRIEAPIGRHPRDRKRMAVNPKT----- 204
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+E G AL+E RLETGRTHQ
Sbjct: 205 GRDAVTYFRVLERYR--GYALLECRLETGRTHQ 235
>gi|332707717|ref|ZP_08427744.1| ribosomal large subunit pseudouridine synthase D [Moorea producens
3L]
gi|332353420|gb|EGJ32933.1| ribosomal large subunit pseudouridine synthase D [Moorea producens
3L]
Length = 320
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 29/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+S V+ GD ++ TI + +PL + E IPLDI+YEDD ++++NKPA +VVHPAPG+ +
Sbjct: 60 ISKKAKVQLGDRISLTIPDPKPLELQPEVIPLDILYEDDVLIIINKPAGLVVHPAPGHES 119
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L HC P L + I G RPGIVHRLDK T+G
Sbjct: 120 GTLVNALLAHC--PKL---------------------TGIGGVQ-RPGIVHRLDKDTTGA 155
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
+ +AK + +H HL Q + T +R Y+ + G PS SG I PI R P +R +MA +P
Sbjct: 156 IAIAKTDQAHGHLQAQLQAKTAQRQYLGVVYGAPSAESGTINQPIGRHPVDRKKMAVVP- 214
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K G R A + ++V E L G L+ ++LETGRTHQ
Sbjct: 215 VEKGG--RPAITHWQVRERL--GNYTLMHFQLETGRTHQ 249
>gi|402815875|ref|ZP_10865467.1| pseudouridine synthase [Paenibacillus alvei DSM 29]
gi|402506915|gb|EJW17438.1| pseudouridine synthase [Paenibacillus alvei DSM 29]
Length = 248
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 127/209 (60%), Gaps = 31/209 (14%)
Query: 33 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 92
D++ T+ E AEDIPLD+ YED +V+V+NKP MVVHPAPG+ +GT+VN ++HH
Sbjct: 3 DVITLTMPEPASADIIAEDIPLDVYYEDKDVIVINKPRGMVVHPAPGHTSGTVVNALMHH 62
Query: 93 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSH 152
C D+S I+G +RPGIVHR+DK TSGLL+ AK + +H
Sbjct: 63 C----------------RDLS-------GING-ELRPGIVHRIDKDTSGLLMAAKHDRAH 98
Query: 153 AHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHA 212
HL+EQ K H++ R Y++L G G ++ PI RD ++R +M + +N ++HA
Sbjct: 99 VHLAEQLKEHSVMRKYVALVHGNVPHDQGTVDAPIGRDTHDR-KMYTVTENN----SKHA 153
Query: 213 ASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +KV+E G + LVE +LETGRTHQ
Sbjct: 154 VTHFKVLERF--GDATLVELQLETGRTHQ 180
>gi|345017841|ref|YP_004820194.1| RluA family pseudouridine synthase [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033184|gb|AEM78910.1| pseudouridine synthase, RluA family [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 305
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 131/226 (57%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + S+ VK D V I E + + E+IPLDI+YEDD+++V+NKP MVVH
Sbjct: 44 VFVNGKTVKPSYKVKENDEVVVNIPEAEKIDVLPENIPLDILYEDDDIIVINKPQGMVVH 103
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPGN +GTLVN +L+HC + S I+G +RPGIVHRL
Sbjct: 104 PAPGNYSGTLVNALLYHC-----------------------KNLSGINGI-LRPGIVHRL 139
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSG++VVAK++ +H LS Q K ++ + Y+++ GV G+IE I R P +R
Sbjct: 140 DKDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKHEEGKIEALIGRHPVDRK 199
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA I R+A + YKV+E + LVE ++TGRTHQ
Sbjct: 200 KMAVIE------DGRYALTLYKVLERFK--ENTLVEAVIKTGRTHQ 237
>gi|126733181|ref|ZP_01748928.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
CCS2]
gi|126716047|gb|EBA12911.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
CCS2]
Length = 341
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 131/227 (57%), Gaps = 35/227 (15%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
H + G +V T++ + EDIPLD+V+EDD+++VVNKPA MVVHPAPG GTLV
Sbjct: 58 HRIAEGSVVEVTVAMAEESHIVGEDIPLDVVFEDDDLIVVNKPAGMVVHPAPGTPNGTLV 117
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N ++HHC E S + G RPGIVHR+DK T+GLLV A
Sbjct: 118 NALIHHCG----------------------ETLSGVGGMK-RPGIVHRIDKETTGLLVAA 154
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMAAIPG-- 202
K + +H HL++QF HT+ER Y+++ G+P Q+ R+ S +P N +++ G
Sbjct: 155 KSDRAHHHLADQFAAHTVERRYLAVCYGLPDQNDPRLRGIKGTSFEPGNILKIQTFLGRH 214
Query: 203 -SNKHGQA------RHAASRYKVIEILAG-GGSALVEWRLETGRTHQ 241
+++ QA RHA +R +++E L +AL+E LETGRTHQ
Sbjct: 215 RTDRQRQAVSFTAGRHAVTRSRIVEGLGNPACAALIECWLETGRTHQ 261
>gi|402836105|ref|ZP_10884655.1| pseudouridine synthase, RluA family [Mogibacterium sp. CM50]
gi|402272117|gb|EJU21340.1| pseudouridine synthase, RluA family [Mogibacterium sp. CM50]
Length = 351
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 136/236 (57%), Gaps = 35/236 (14%)
Query: 6 LEFNQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 65
+E QVSV S +++ + VK G+ + I E + + A E+IP+DIVYEDD+V+V
Sbjct: 84 IEDGQVSV-----SGRQVAKKYKVKAGESITINIPEAKSIDAAPENIPIDIVYEDDDVIV 138
Query: 66 VNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGA 125
V KP MVVHPA GN GTLVN I++HC + SSI+GA
Sbjct: 139 VEKPRGMVVHPAAGNPDGTLVNAIMYHCG----------------------DSLSSINGA 176
Query: 126 SIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEV 185
IRPGIVHR+DK TSGLL++AK++ +H L+ Q K+H++ R YI+L + I+
Sbjct: 177 -IRPGIVHRIDKDTSGLLMIAKNDKAHESLTAQLKVHSVTREYIALVFDNIRKDKLTIDA 235
Query: 186 PISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
PI RD NR+R A N G +R A + +V++ G L+ RLETGRTHQ
Sbjct: 236 PIGRDDINRLRRAV----NGAG-SRDAVTHIRVLKRY--GRYTLIAARLETGRTHQ 284
>gi|315038468|ref|YP_004032036.1| pseudouridine synthase [Lactobacillus amylovorus GRL 1112]
gi|325956884|ref|YP_004292296.1| pseudouridine synthase [Lactobacillus acidophilus 30SC]
gi|385817725|ref|YP_005854115.1| pseudouridine synthase [Lactobacillus amylovorus GRL1118]
gi|312276601|gb|ADQ59241.1| pseudouridine synthase [Lactobacillus amylovorus GRL 1112]
gi|325333449|gb|ADZ07357.1| pseudouridine synthase [Lactobacillus acidophilus 30SC]
gi|327183663|gb|AEA32110.1| pseudouridine synthase [Lactobacillus amylovorus GRL1118]
Length = 302
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 132/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K VS+ V+ GD + + ++PL EDIPLDIVYEDD+V+VVNKP MVVH
Sbjct: 41 ILVNQKKEKVSYKVQAGDQIEVNVPAVKPLDVVPEDIPLDIVYEDDDVIVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPG++ TLVN +L+H LA S E F RPGIVHR+
Sbjct: 101 PAPGHSDHTLVNALLYHTK--DLAKS-PEGF---------------------RPGIVHRI 136
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL++AK+ + L +Q T +R+Y ++ G S+ +G I+ PI R+P +R
Sbjct: 137 DKDTSGLLMIAKNAKARESLEDQLAHKTNKRIYWAIVHGNFSEENGTIDAPIGRNPYDRK 196
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA + + + A + +KV++ G +L+E +LETGRTHQ
Sbjct: 197 KMAVVE------RGKKAITHFKVLKQFK--GYSLIECQLETGRTHQ 234
>gi|319789350|ref|YP_004150983.1| pseudouridine synthase, RluA family [Thermovibrio ammonificans
HB-1]
gi|317113852|gb|ADU96342.1| pseudouridine synthase, RluA family [Thermovibrio ammonificans
HB-1]
Length = 314
Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK G+ V + E +P+ + E IPL+++YED +V+V+NKPA MVVHPAPG+ +GTL
Sbjct: 46 AYKVKEGERVEFEVPEPEPIEVKPEAIPLEVIYEDQDVIVINKPAGMVVHPAPGHYSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC D I G ++RPGIVHRLDK T+GL+VV
Sbjct: 106 VNALLHHC-------------KDLGGI-----------GGALRPGIVHRLDKDTAGLIVV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ + L EQFK ++ R Y +L G+P + RI +PI RD +R + + S K
Sbjct: 142 AKNDLAQQSLIEQFKNRSVGRFYRALIYGIPKREHDRIVLPIGRDKFDRKKFSPNTTSPK 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y VIE A ++ +LETGRTHQ
Sbjct: 202 -----EAITNYWVIEKFPEHNVAEIKCKLETGRTHQ 232
>gi|374849516|dbj|BAL52529.1| ribosomal large subunit pseudouridine synthase D [uncultured
Chloroflexi bacterium]
Length = 307
Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 138/242 (57%), Gaps = 37/242 (15%)
Query: 7 EFNQVSVLAL----FLSMDKLSVS---HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE 59
EF++ + L F+ ++ L V+ H + GD V + P E IP+++++E
Sbjct: 27 EFSRTRLQGLIEDGFVRVNGLVVTKNGHKLAFGDRVEVRVPPPAPSSLIPEAIPIEVLFE 86
Query: 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFS 119
+++V+V+NKPA +VVHPA G+ GTLV+ +LHH D E I +E
Sbjct: 87 NEDVVVINKPAGLVVHPAAGHDHGTLVHALLHH-------------LPDLEGIGGEE--- 130
Query: 120 SSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQS 179
RPGIVHRLDKGTSGL++VA++E +H +L +QF+L +E+ Y++L G P
Sbjct: 131 --------RPGIVHRLDKGTSGLMIVARNERAHRYLQDQFRLRRVEKTYLALVDGHPPTP 182
Query: 180 SGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRT 239
SGRIE PI RDP +R RMA + G+ R A S Y+++E AL+E TGRT
Sbjct: 183 SGRIEAPIGRDPLHRKRMAIL----HPGKGREAISEYRLLETFP--AHALLEVHPLTGRT 236
Query: 240 HQ 241
HQ
Sbjct: 237 HQ 238
>gi|310779318|ref|YP_003967651.1| RluA family pseudouridine synthase [Ilyobacter polytropus DSM 2926]
gi|309748641|gb|ADO83303.1| pseudouridine synthase, RluA family [Ilyobacter polytropus DSM
2926]
Length = 313
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+KG + + I E + L E +DIP++ VYED +++V+NK MVVHPAPGN +GTLVN
Sbjct: 60 LKGNEKILVRIPEDEMLDIEPQDIPIEKVYEDKDLVVINKAPDMVVHPAPGNYSGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
++H +I D S+I+G IRPGIVHRLDK TSGL+V+AK+
Sbjct: 120 LMH-------------------NIKD----LSNINGV-IRPGIVHRLDKNTSGLIVIAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ SH LS+ FK I + YI + G+ S+ +GRIE I R+P NR M +
Sbjct: 156 DFSHLKLSDMFKNKDISKTYICICKGIFSEKTGRIENLIGRNPKNRKTMTVV-----QKN 210
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A S YK+++ G +LVE ++ETGRTHQ
Sbjct: 211 GKNAISNYKILD--EAGDFSLVEVKIETGRTHQ 241
>gi|150390556|ref|YP_001320605.1| RluA family pseudouridine synthase [Alkaliphilus metalliredigens
QYMF]
gi|149950418|gb|ABR48946.1| pseudouridine synthase, RluA family [Alkaliphilus metalliredigens
QYMF]
Length = 310
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 123/213 (57%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK G ++ ++ E + L A++IPLDIVYEDD++LVVNKP MVVHPAPGN T+VN
Sbjct: 55 VKVGQVIVVSLPEAKELEVTAQNIPLDIVYEDDDLLVVNKPQDMVVHPAPGNYENTMVNA 114
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L+HC SSI+G IRPGIVHR+DK TSGLL+VAK+
Sbjct: 115 LLYHCKGKL----------------------SSINGI-IRPGIVHRIDKDTSGLLMVAKN 151
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
H+H LSEQ K H+ R Y ++ G + I PI+R +R++MA + G
Sbjct: 152 NHAHQFLSEQLKDHSTTRKYHGISVGTIKEERATINAPIARHQTDRLKMAVLAG------ 205
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + +V+ G +E +LETGRTHQ
Sbjct: 206 GRNAVTHIQVLNRF--GDHTYMEAQLETGRTHQ 236
>gi|160933118|ref|ZP_02080507.1| hypothetical protein CLOLEP_01961 [Clostridium leptum DSM 753]
gi|156868192|gb|EDO61564.1| pseudouridine synthase, RluA family [Clostridium leptum DSM 753]
Length = 306
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 124/214 (57%), Gaps = 34/214 (15%)
Query: 30 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 89
+ GD V I + +PL +AE++PLDIVYEDD++LVVNKP MVVHPAPGN GTLVN +
Sbjct: 57 RAGDSVALRIPDPEPLCLQAENVPLDIVYEDDDLLVVNKPQGMVVHPAPGNYQGTLVNAL 116
Query: 90 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVVAK 147
L HC +S+SG + IRPGIVHR+DK TSGLL+VAK
Sbjct: 117 LAHC-------------------------GNSLSGINGVIRPGIVHRIDKDTSGLLMVAK 151
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
++ +H L+ Q K H+ R Y ++ +G Q SG + PI R P +R +MA ++K
Sbjct: 152 NDFAHQGLARQIKEHSFRREYEAVVAGRMKQESGVVNAPIGRHPIDRKKMAVTEKNSK-- 209
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + ++VI G + RLETGRTHQ
Sbjct: 210 ---EAVTYFRVIAEYP--GYTHIRLRLETGRTHQ 238
>gi|339490789|ref|YP_004705294.1| pseudouridine synthase [Leuconostoc sp. C2]
gi|338852461|gb|AEJ30671.1| pseudouridine synthase [Leuconostoc sp. C2]
Length = 308
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 131/226 (57%), Gaps = 33/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ +K+ S+ V GD ++ E+ AEDIPLDIVYED+++LVVNKP MVVH
Sbjct: 41 ILVNNNKVKRSYKVSVGDTISIFPPEVASTEIIAEDIPLDIVYEDNDILVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+++GTLVN +LHH L S+I+G + RPGIVHR+
Sbjct: 101 PAAGHSSGTLVNALLHHAPL------------------------STING-TFRPGIVHRI 135
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
D+ TSGLL+VAK++ +H LS Q K H +R+Y +L G S+ SG I PI R P +R
Sbjct: 136 DRDTSGLLMVAKNDVAHKALSAQLKAHKNDRIYYALVRGEFSEDSGTINAPIGRHPVDRK 195
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A G R A + ++V+ G L++ RLETGRTHQ
Sbjct: 196 RQAVQVG------GREAITHFEVVHRYV--GFTLLKVRLETGRTHQ 233
>gi|296111936|ref|YP_003622318.1| pseudouridine synthase [Leuconostoc kimchii IMSNU 11154]
gi|295833468|gb|ADG41349.1| pseudouridine synthase [Leuconostoc kimchii IMSNU 11154]
Length = 308
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 131/226 (57%), Gaps = 33/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ +K+ S+ V GD ++ E+ AEDIPLDIVYED+++LVVNKP MVVH
Sbjct: 41 ILVNNNKVKRSYKVSVGDTISIFPPEVASTEIIAEDIPLDIVYEDNDILVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+++GTLVN +LHH L S+I+G + RPGIVHR+
Sbjct: 101 PAAGHSSGTLVNALLHHAPL------------------------STING-TFRPGIVHRI 135
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
D+ TSGLL+VAK++ +H LS Q K H +R+Y +L G S+ SG I PI R P +R
Sbjct: 136 DRDTSGLLMVAKNDVAHKALSAQLKAHKNDRIYYALVRGEFSEDSGTINAPIGRHPVDRK 195
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A G R A + ++V+ G L++ RLETGRTHQ
Sbjct: 196 RQAVQVG------GREAITHFEVVHRYV--GFTLLKVRLETGRTHQ 233
>gi|225018395|ref|ZP_03707587.1| hypothetical protein CLOSTMETH_02342 [Clostridium methylpentosum
DSM 5476]
gi|224948813|gb|EEG30022.1| hypothetical protein CLOSTMETH_02342 [Clostridium methylpentosum
DSM 5476]
Length = 308
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 129/223 (57%), Gaps = 34/223 (15%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ L+ H ++ G+ ++ TI + +PL E+IPLDI+YED ++LVVNKP HMVVHPA GN
Sbjct: 48 EPLNKKHKLRAGETISVTIPDPEPLDVLPEEIPLDILYEDSDLLVVNKPKHMVVHPAAGN 107
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKG 138
TGTLVN +LHHC S+SG + IRPGIVHR+DK
Sbjct: 108 YTGTLVNALLHHC-------------------------RGSLSGINGVIRPGIVHRIDKD 142
Query: 139 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 198
TSGLL+VAK++ +H L+ Q K H+ +R Y ++ G +S+G ++ PI R +R +M
Sbjct: 143 TSGLLIVAKNDQAHVGLAAQIKEHSFDRTYEAVVYGKFVESTGTVDKPIGRSEKDRKKMC 202
Query: 199 AIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++K A + Y+V+ G + RLETGRTHQ
Sbjct: 203 VTTKNSK-----PAVTHYEVLG--EYGQFTHLRLRLETGRTHQ 238
>gi|167630173|ref|YP_001680672.1| pseudouridine synthase [Heliobacterium modesticaldum Ice1]
gi|167592913|gb|ABZ84661.1| pseudouridine synthase, rlua family [Heliobacterium modesticaldum
Ice1]
Length = 369
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 131/219 (59%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ ++ GD++ + + EDIPL+I+++D ++ V+NKPA +VVHPA G+ +
Sbjct: 81 LKANYRLRPGDVIEVAPPAPEAVEILPEDIPLEIIFQDADIAVINKPAGLVVHPAEGHWS 140
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+H +D+S I+G +RPGIVHR+DK TSGL
Sbjct: 141 GTLVNALLYHI----------------KDLS-------GING-ELRPGIVHRIDKDTSGL 176
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK++ +H HL+EQ K H + R Y+++ GV +GR+E PI RDP +R RMA I G
Sbjct: 177 LVVAKNDRAHIHLTEQVKDHRVRREYLAVVHGVIGAETGRVEAPIGRDPKDRQRMAVIAG 236
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+ G +L+ RLETGRTHQ
Sbjct: 237 ------GKSAITHFRVLARYPEQGFSLLHCRLETGRTHQ 269
>gi|251797854|ref|YP_003012585.1| pseudouridine synthase [Paenibacillus sp. JDR-2]
gi|247545480|gb|ACT02499.1| pseudouridine synthase, RluA family [Paenibacillus sp. JDR-2]
Length = 315
Score = 159 bits (403), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 138/227 (60%), Gaps = 30/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
A+ ++ + + ++ + GD V + E + AEDIPLDIVYED +V+V+NKP MVV
Sbjct: 52 AVLVNQNTVKPNYKLSSGDHVGIRVPEPEDAAIVAEDIPLDIVYEDADVIVINKPRGMVV 111
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+++GT+VN +++HC +D+ S I+G +RPGIVHR
Sbjct: 112 HPAPGHSSGTVVNALMYHC----------------KDL-------SGINGV-LRPGIVHR 147
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+ AK++ +H L+EQ K H++ R YI+L G G I+ PI RD N+R
Sbjct: 148 IDKDTSGLLMAAKNDLAHVSLAEQLKDHSVSRKYIALVHGNLPHDQGTIDAPIGRDQNDR 207
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ + N ++HA + + V+E +A + +VE +LETGRTHQ
Sbjct: 208 -KLFTVTDRN----SKHAVTHFAVLERIADDYT-IVELQLETGRTHQ 248
>gi|326389927|ref|ZP_08211490.1| pseudouridine synthase, RluA family [Thermoanaerobacter ethanolicus
JW 200]
gi|325993987|gb|EGD52416.1| pseudouridine synthase, RluA family [Thermoanaerobacter ethanolicus
JW 200]
Length = 305
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 131/226 (57%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + S+ VK D V I E + + E+IPLDI+YEDD+++V+NKP MVVH
Sbjct: 44 VFVNGKTVKPSYKVKENDEVVVNIPEAEKIDVLPENIPLDILYEDDDIIVINKPQGMVVH 103
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPGN +GTLVN +L+HC + S I+G +RPGIVHRL
Sbjct: 104 PAPGNYSGTLVNALLYHC-----------------------KNLSGINGI-LRPGIVHRL 139
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSG++VVAK++ +H LS Q K ++ + Y+++ GV G+IE I R P +R
Sbjct: 140 DKDTSGVMVVAKNDKAHISLSNQIKERSVFKKYVAIVEGVIKHEEGKIEALIGRHPVDRK 199
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA I R+A + YKV+E + L+E ++TGRTHQ
Sbjct: 200 KMAVIE------DGRYALTLYKVLERFK--ENTLIEAVIKTGRTHQ 237
>gi|253577879|ref|ZP_04855151.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850197|gb|EES78155.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 304
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 130/219 (59%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ V+ GD ++ + +++ EDIPLDI+YEDD+VL+VNKP MVVHP+ G+ +
Sbjct: 49 VKANYKVQEGDEISVAVPDIKEPDILPEDIPLDILYEDDDVLIVNKPKGMVVHPSAGHTS 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN I+ HC ++ S I+G +RPGIVHR+DK T+G
Sbjct: 109 GTLVNAIMFHC----------------------KDNLSGINGV-LRPGIVHRIDKDTTGA 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+V K++++H +L+EQ K H+I R Y ++ +GV + G IE PI R P +R +MA
Sbjct: 146 LLVCKNDNAHRNLAEQLKEHSIRRRYRAIVAGVLKEDEGTIEGPIGRHPIDRKKMAV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + YKV+E + VE RLETGRTHQ
Sbjct: 203 --NYKNGKDAVTHYKVLERFK--NATYVECRLETGRTHQ 237
>gi|434402867|ref|YP_007145752.1| ribosomal large subunit pseudouridine synthase D [Cylindrospermum
stagnale PCC 7417]
gi|428257122|gb|AFZ23072.1| ribosomal large subunit pseudouridine synthase D [Cylindrospermum
stagnale PCC 7417]
Length = 321
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 130/224 (58%), Gaps = 33/224 (14%)
Query: 21 DKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAP 78
DK+ S + GD + I E++PL+ +AEDIPLDI+YEDD ++++NKPA +VVHPAP
Sbjct: 52 DKVCTSKKITLVRGDRITLEIPEVKPLQLQAEDIPLDILYEDDQLIILNKPAGLVVHPAP 111
Query: 79 GNATGTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDK 137
G+ GTLVN +L HC +LP + G RPGIVHRLDK
Sbjct: 112 GHPDGTLVNALLAHCPNLPGI-------------------------GGVQRPGIVHRLDK 146
Query: 138 GTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRM 197
T+G + +AK + + HL Q + T R Y+ + G P SG I++PI R P +R +M
Sbjct: 147 DTTGAIAIAKTDIAFQHLQAQLQAKTARREYLGVVYGAPRTESGIIDLPIGRHPQDRKKM 206
Query: 198 AAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + S + G R+A + +++ E L G L+ ++LETGRTHQ
Sbjct: 207 AIV--SIEQG-GRNAITHWQIRERL--GNYTLIHFQLETGRTHQ 245
>gi|160914264|ref|ZP_02076485.1| hypothetical protein EUBDOL_00274 [Eubacterium dolichum DSM 3991]
gi|158433891|gb|EDP12180.1| pseudouridine synthase, RluA family [Eubacterium dolichum DSM 3991]
Length = 303
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 133/227 (58%), Gaps = 31/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
++ ++ + + + VK D + + L A E + LDI YED +V+V+NKP +VV
Sbjct: 41 SILVNGEVIRAKYKVKPADHITAAFEDEMALEAAPEKMELDIRYEDHDVIVINKPKGIVV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPA GN +GTLVNG+L+HC +D+S I+G +RPGIVHR
Sbjct: 101 HPANGNQSGTLVNGLLYHC----------------KDLS-------GINGV-LRPGIVHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK T+GLL+VAK++ +HA LS+Q + ++ R+Y +L GV G I+ PI RDP +R
Sbjct: 137 IDKDTTGLLIVAKNDKAHASLSKQLQNKSVNRLYYALVHGVIEHEFGTIDAPIGRDPKDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA I ++K A + ++V+E A LVE RLETGRTHQ
Sbjct: 197 QKMAVIATNSK-----PARTHFRVVERFA--KYTLVECRLETGRTHQ 236
>gi|304404034|ref|ZP_07385696.1| pseudouridine synthase, RluA family [Paenibacillus curdlanolyticus
YK9]
gi|304347012|gb|EFM12844.1| pseudouridine synthase, RluA family [Paenibacillus curdlanolyticus
YK9]
Length = 324
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 136/227 (59%), Gaps = 31/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
A+ ++ + H ++ GD++ + E +P AE IPL+IVYED++V+V+NK +VV
Sbjct: 62 AVLVNGTEAKAKHRLEAGDVITVEVPEPEPAEIIAEPIPLNIVYEDEDVIVINKQRGLVV 121
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+ +GT+VN +++HC +D+S I+G SIRPGIVHR
Sbjct: 122 HPAPGHHSGTVVNALMYHC----------------QDLS-------GING-SIRPGIVHR 157
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+ AK++ +HA LS Q K HT+ R YI+L G G ++ PI RD +R
Sbjct: 158 IDKDTSGLLMAAKNDAAHASLSAQLKEHTVTRKYIALVHGNLPHDRGTVDAPIGRDSRDR 217
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+M A+ N ++HA + + VIE L ++E +LETGRTHQ
Sbjct: 218 -KMFAVTDKN----SKHAVTHFSVIERL--DDYTVLELQLETGRTHQ 257
>gi|325288855|ref|YP_004265036.1| ribosomal large subunit pseudouridine synthase D [Syntrophobotulus
glycolicus DSM 8271]
gi|324964256|gb|ADY55035.1| ribosomal large subunit pseudouridine synthase D [Syntrophobotulus
glycolicus DSM 8271]
Length = 312
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 130/216 (60%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ D + + + + L+ + IPL+I+YEDD++LVVNKP MVVHPAPG GTL
Sbjct: 59 NYRIRAEDKIGINLPKPRELKVVPQQIPLEIIYEDDDLLVVNKPQGMVVHPAPGVWEGTL 118
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC D+S I+G IRPGIVHR+DK TSGLLVV
Sbjct: 119 VNALLYHC----------------RDLS-------GINGI-IRPGIVHRIDKDTSGLLVV 154
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH L+ Q K H ++R Y+++ GV S+ SG I+ PI RDP +R +MA + K
Sbjct: 155 AKNDESHNQLAGQLKEHKMQRKYLAVVHGVLSEPSGTIDAPIGRDPKDRKKMAVV---FK 211
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H +R A + Y+V E G ++ LETGRTHQ
Sbjct: 212 H--SRPAVTHYEVEERFI--GYTKIKAVLETGRTHQ 243
>gi|319937281|ref|ZP_08011688.1| pseudouridine synthase [Coprobacillus sp. 29_1]
gi|319807647|gb|EFW04240.1| pseudouridine synthase [Coprobacillus sp. 29_1]
Length = 305
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 132/219 (60%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ S+ V+ G+ V I + + EDIPLD+VYED +V+V+NKP M+VHP+ G +
Sbjct: 49 IKASYKVETGEDVIVYIPKPESTDILPEDIPLDVVYEDQDVIVINKPTGMIVHPSIGIYS 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC D+S I+G + RPGIVHR+DK TSGL
Sbjct: 109 GTLVNALLYHC----------------HDLS-------GINGVT-RPGIVHRIDKETSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H LS+Q + HT+ R Y++L G+ GRIE PI RD N+R +M
Sbjct: 145 LMVAKNDKAHQSLSKQLQEHTVTRRYLALVHGLIPHEFGRIEAPIGRDKNDRQKMTC--- 201
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++K+ A+ A + +KVIE +LVE RLETGRTHQ
Sbjct: 202 TDKN--AKDAITNFKVIERFR--DMSLVECRLETGRTHQ 236
>gi|312135180|ref|YP_004002518.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
owensensis OL]
gi|311775231|gb|ADQ04718.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
owensensis OL]
Length = 300
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 124/216 (57%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD++ I E + L A+DI +D+VYED+++ V+NKP MVVHP GN TL
Sbjct: 45 AYKVRNGDIIKVVIPEPKQLSLVAQDIDIDVVYEDEHLAVINKPRGMVVHPGAGNFENTL 104
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LH S SSI+G IRPGIVHRLDK TSGLLVV
Sbjct: 105 VNALLHKFSGRL----------------------SSINGV-IRPGIVHRLDKDTSGLLVV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H LSE K H I+R+Y ++ GV + SG ++ PI R P NR++MA +P
Sbjct: 142 AKTDEAHIKLSEALKSHQIKRIYYAICEGVLKEDSGVVDAPIGRHPVNRLKMAVVP---- 197
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E V+ RL+TGRTHQ
Sbjct: 198 --NGKEAVTYFEVLERF--DKYTFVKLRLKTGRTHQ 229
>gi|197301721|ref|ZP_03166791.1| hypothetical protein RUMLAC_00447 [Ruminococcus lactaris ATCC
29176]
gi|197299161|gb|EDY33691.1| pseudouridine synthase, RluA family [Ruminococcus lactaris ATCC
29176]
Length = 304
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 129/226 (57%), Gaps = 30/226 (13%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K+ ++ + GD ++ + + +PL AE+IPLDI+YED+++L+VNKP MVVH
Sbjct: 40 ILVNGKKVKANYKLNEGDQIDVEVPDPEPLDIAAENIPLDILYEDEDILIVNKPKGMVVH 99
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
P+PG+ TLVN IL+HC E S I+G IRPGIVHR+
Sbjct: 100 PSPGHPDHTLVNAILYHCG----------------------EHLSGINGV-IRPGIVHRI 136
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
D T+G L++ K++H+H L+EQ K H+I R Y ++ G +G + I R P +R
Sbjct: 137 DMNTTGSLLICKNDHAHQILAEQLKEHSITRRYHAIVHGSLKADTGTVNASIGRHPTDRK 196
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+M S K RHA + Y+V+E L G +E LETGRTHQ
Sbjct: 197 KM-----STKALNGRHAVTHYRVLERL--GNYTYIECELETGRTHQ 235
>gi|433463302|ref|ZP_20420861.1| pseudouridine synthase [Halobacillus sp. BAB-2008]
gi|432187812|gb|ELK45069.1| pseudouridine synthase [Halobacillus sp. BAB-2008]
Length = 303
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 128/216 (59%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ G+++ I E +P+ EDIPLD+VYED++V+VVNKP+ MV+HP+ G+ +GTL
Sbjct: 51 NYKVQEGNVITWYIPEPEPMDILPEDIPLDVVYEDEDVIVVNKPSGMVIHPSAGHYSGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC DD S I+G RPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLHHC--------------------DD---LSGINGVE-RPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q T+ER Y+++ G + G I+ PI RD +R RMA +
Sbjct: 147 AKNDVAHQSLARQLSEKTVERKYVAIVHGDITHEYGTIDAPIGRDTRDRQRMAVV----- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V++ LVE RLETGRTHQ
Sbjct: 202 -DNGRDAVTHFRVLQHFE--DYTLVECRLETGRTHQ 234
>gi|309778048|ref|ZP_07672988.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 3_1_53]
gi|308914185|gb|EFP59985.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 3_1_53]
Length = 304
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + + L A E + LD+ YED++V+V+NKP ++VVHPA GN TGTL
Sbjct: 51 NYKVKAQDHITACFDDEMELEARPEAMELDVRYEDEDVIVINKPKNIVVHPAAGNQTGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+HC +D+S I+G ++RPGI+HR+DK T+GLL+V
Sbjct: 111 VNGLLYHC----------------KDLS-------GING-TLRPGIIHRIDKDTTGLLIV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +HA LS+Q + T+ R+Y +L GV G I+ PI RD +R +MA ++K
Sbjct: 147 AKNDLAHASLSKQLQSKTVNRLYYALVHGVIQHDFGTIDAPIGRDVKDRQKMAVTSTNSK 206
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + ++VIE LVE RLETGRTHQ
Sbjct: 207 -----DARTHFQVIERFE--NYTLVECRLETGRTHQ 235
>gi|379012020|ref|YP_005269832.1| pseudouridine synthase RluA [Acetobacterium woodii DSM 1030]
gi|375302809|gb|AFA48943.1| pseudouridine synthase RluA [Acetobacterium woodii DSM 1030]
Length = 304
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 132/220 (60%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K VS +KGG+ ++ I + +AEDIPLDIV+ED++V+VVNKP MVVHPAPGN
Sbjct: 48 KKKVSLRLKGGETISLMIPDPIECHMQAEDIPLDIVFEDEDVIVVNKPQGMVVHPAPGNL 107
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
+GTLVNG++ H + S+I+G +RPGI+HR+DK TSG
Sbjct: 108 SGTLVNGLIFHT-----------------------KNLSNINGV-LRPGIIHRIDKDTSG 143
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL+VAK++ +H LSEQ K HTI R Y L G + G +++PI R RI+MA +
Sbjct: 144 LLMVAKNDQAHRILSEQLKEHTILRRYYGLVKGTVKPNRGTVDMPIGRHEQLRIKMAVVE 203
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++K A + ++V++ A L+ ++LETGRTHQ
Sbjct: 204 KNSK-----PAITHFEVVKRYA--QYTLLRFQLETGRTHQ 236
>gi|390452025|ref|ZP_10237581.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
gi|389660237|gb|EIM71944.1| ribosomal large subunit pseudouridine synthase D, partial
[Nitratireductor aquibiodomus RA22]
Length = 267
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 121/210 (57%), Gaps = 34/210 (16%)
Query: 41 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 100
E +P +AE IPL+++YEDD ++V+NKPA +VVHPAPGN +GTLVN +LHHC
Sbjct: 2 EAEPAEPKAEAIPLEVLYEDDALIVINKPAGLVVHPAPGNWSGTLVNALLHHCGA----- 56
Query: 101 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFK 160
S S G RPGIVHRLD+ TSG++VVAK +++H LSE F
Sbjct: 57 ------------------SLSGIGGVRRPGIVHRLDRDTSGVMVVAKTDNAHRLLSETFA 98
Query: 161 LH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRY 216
H +ER Y+++ G P + +G I+ P+ R +R A +P ARHA +RY
Sbjct: 99 DHGRSGDLERAYVAVVWGAPERMAGTIDAPLGRHAQSRTLRAVVPAGRS--DARHAVTRY 156
Query: 217 KVIEILAGGGS-----ALVEWRLETGRTHQ 241
+V + GS A VE RLETGRTHQ
Sbjct: 157 QVQKRYGADGSGKAFAAKVECRLETGRTHQ 186
>gi|342217473|ref|ZP_08710117.1| pseudouridine synthase, RluA family [Megasphaera sp. UPII 135-E]
gi|341594276|gb|EGS37076.1| pseudouridine synthase, RluA family [Megasphaera sp. UPII 135-E]
Length = 305
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 132/231 (57%), Gaps = 40/231 (17%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
++++ K ++ + G MV S+ L A E+IPLDI+YED++++VVNKP MVVH
Sbjct: 41 VYVNDCKRKANYRLDVGQMVAMEPSQPTELCATPENIPLDILYEDEHLIVVNKPRGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVH 133
PAPGN GTLVN +L+HC S+SG + IRPGIVH
Sbjct: 101 PAPGNPAGTLVNALLYHCQ-------------------------GSLSGINGMIRPGIVH 135
Query: 134 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN 193
RLDK TSG++VVAK + +H HL+EQ K HT +R Y +L G ++ G IE PI R P +
Sbjct: 136 RLDKDTSGVMVVAKTDVAHRHLAEQIKAHTAKRTYWTLVHGTLAEMRGTIEAPIGRHPKD 195
Query: 194 RIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEW---RLETGRTHQ 241
RI+MA + K+G R A + + V E + W +LETGRTHQ
Sbjct: 196 RIKMAV---NLKNG--REAITHFTVQE-----RYRMYTWIACQLETGRTHQ 236
>gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
gi|254040287|gb|ACT57083.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Candidatus Liberibacter asiaticus str. psy62]
Length = 340
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 140/245 (57%), Gaps = 37/245 (15%)
Query: 8 FNQVSVLALFLSMDKLSVSHN----VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNV 63
+ ++ +L F+S++ + VS N V GD T+ Q L E+IPLDI+YEDD++
Sbjct: 41 YVKILILNGFISINGM-VSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDI 99
Query: 64 LVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS 123
+V+NKPA +VVHPAPGN TGTLVN +L+HC SSI+
Sbjct: 100 IVINKPAGLVVHPAPGNWTGTLVNALLYHC----------------------HNNLSSIN 137
Query: 124 GASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQS 179
G RPGIVHRLDK T+G++VVAK++ +H LSEQF H ++R Y ++ G+P
Sbjct: 138 GVK-RPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLKRAYYAMVWGIPLPD 196
Query: 180 SGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGS---ALVEWRLET 236
SG I P+ R +NR+R A +K A A + Y+ IEI + +L++ LET
Sbjct: 197 SGIINAPLGRCKSNRLRRAVKGIDDK--TADSAITHYQTIEIYNKNSNFAVSLLKCHLET 254
Query: 237 GRTHQ 241
GRTHQ
Sbjct: 255 GRTHQ 259
>gi|440681498|ref|YP_007156293.1| ribosomal large subunit pseudouridine synthase D [Anabaena
cylindrica PCC 7122]
gi|428678617|gb|AFZ57383.1| ribosomal large subunit pseudouridine synthase D [Anabaena
cylindrica PCC 7122]
Length = 306
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 125/215 (58%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
++ GD ++ I QPL+ AEDIPLDI+YEDD +L++NKPA +VVHPAPG+ GTLVN
Sbjct: 53 HLNAGDRISLEIPAAQPLKLVAEDIPLDILYEDDQLLILNKPAGLVVHPAPGHPDGTLVN 112
Query: 88 GILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+L HC +LP + G RPGIVHRLDK T+G + +A
Sbjct: 113 ALLAHCPNLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIA 147
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + ++ L Q + T +R Y+ + GVP +G I++PI R+P +R +MA IP
Sbjct: 148 KTDIAYQSLQAQLQAKTAKREYLGVIYGVPKTENGIIDLPIGRNPQDRKKMAIIPIEEG- 206
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V E L G L+ ++LETGRTHQ
Sbjct: 207 --GRSAITHWQVRERL--GNYTLIHFQLETGRTHQ 237
>gi|342732560|ref|YP_004771399.1| pseudouridine synthase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|384455955|ref|YP_005668550.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Arthromitus sp. SFB-mouse-Yit]
gi|417960702|ref|ZP_12603244.1| pseudouridine synthase, RluA family [Candidatus Arthromitus sp.
SFB-2]
gi|417969080|ref|ZP_12610042.1| pseudouridine synthase, RluA family [Candidatus Arthromitus sp.
SFB-co]
gi|418016034|ref|ZP_12655599.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|418372816|ref|ZP_12964908.1| pseudouridine synthase, RluA family [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330015|dbj|BAK56657.1| pseudouridine synthase [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|345506369|gb|EGX28663.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|346984298|dbj|BAK79974.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Arthromitus sp. SFB-mouse-Yit]
gi|380335277|gb|EIA25510.1| pseudouridine synthase, RluA family [Candidatus Arthromitus sp.
SFB-2]
gi|380338449|gb|EIA27336.1| pseudouridine synthase, RluA family [Candidatus Arthromitus sp.
SFB-co]
gi|380342485|gb|EIA30930.1| pseudouridine synthase, RluA family [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 301
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 128/215 (59%), Gaps = 32/215 (14%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ VK GD+V+ +++ L A+DI LDIVYED +V++VNK M+VHPA TLV
Sbjct: 53 YKVKIGDVVSILDFDIKRLDILAQDIFLDIVYEDSDVIIVNKEQGMIVHPAQNIYKDTLV 112
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N ++++C +D+S SI+G RPGI+HR+DK TSGLLVVA
Sbjct: 113 NALMYYC----------------KDLS-------SINGVE-RPGIIHRIDKDTSGLLVVA 148
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K++ SH LSEQFK+H+I R Y++L GV +S G I+ I R+P NRI+MA +
Sbjct: 149 KNDLSHKFLSEQFKIHSIRREYVALVHGVIKKSEGLIKTNIGRNPQNRIKMAVVQ----- 203
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + YKV+ LV+ +L TGRTHQ
Sbjct: 204 -KGKEAITEYKVLR--RYRRCTLVKCKLHTGRTHQ 235
>gi|339498527|ref|ZP_08659503.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 312
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V GD+V T E++ AE+IPLDIVYEDD++LVVNKP MVVHPA G+ TGTL
Sbjct: 51 SYKVSSGDVVTITPPEIKDTEILAENIPLDIVYEDDDLLVVNKPQGMVVHPAAGHTTGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H L S+I+G RPGIVHR+D+ TSGLL+V
Sbjct: 111 VNALMYHSPL------------------------STING-EFRPGIVHRIDRDTSGLLMV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K H +R+YI+L G + +G I P++R +R + A G
Sbjct: 146 AKNDSAHQALSAQLKAHKNQRIYIALVRGEFQEDTGTISAPLARHKVDRKKQAVTEG--- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V++ G L++ RLETGRTHQ
Sbjct: 203 ---GREAITHFQVLKRFV--GYTLLKVRLETGRTHQ 233
>gi|339009228|ref|ZP_08641800.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
gi|338773706|gb|EGP33237.1| pseudouridine synthase [Brevibacillus laterosporus LMG 15441]
Length = 310
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V D ++ + + L+ EA+ + LDIVYED +V+VVNKP +VVHPA G+ TGTL
Sbjct: 57 NYKVAMDDEISLRVPPPKELKIEAQAMDLDIVYEDSDVVVVNKPRGLVVHPALGHYTGTL 116
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC +D+S I+G +RPGIVHR+DK TSGLL++
Sbjct: 117 VNGLMHHC----------------KDLS-------GINGV-MRPGIVHRIDKDTSGLLMI 152
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +HA L+ Q K HT+ R Y++L G G I+ PI RDP NR +MA + G++K
Sbjct: 153 AKNDKAHASLAAQLKEHTVNRKYVALVHGEIPHEMGTIDAPIGRDPKNRQQMAVVFGNSK 212
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E + LVE +LETGRTHQ
Sbjct: 213 -----PAVTHFVVLERMK--DFTLVELKLETGRTHQ 241
>gi|227904070|ref|ZP_04021875.1| pseudouridine synthase [Lactobacillus acidophilus ATCC 4796]
gi|227868089|gb|EEJ75510.1| pseudouridine synthase [Lactobacillus acidophilus ATCC 4796]
Length = 305
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 127/218 (58%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ ++ GD + T+ ++PL AE+IPLDIVYEDD+V+VVNKP MVVHPAPG+
Sbjct: 52 KVSYKIQDGDKIEITVPAVKPLDIVAENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDH 111
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H +D++ E RPGIVHR+DK TSGLL
Sbjct: 112 TLVNALLYHT----------------QDLAQSPE--------GFRPGIVHRIDKDTSGLL 147
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK+ + L +Q T +R+Y ++ G S+ G I+ PI R+P +R +MA +
Sbjct: 148 MIAKNATARESLEQQLANKTNKRIYWAIVHGNFSEEQGSIDAPIGRNPYDRKKMAVVENG 207
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV++ G +L+E +LETGRTHQ
Sbjct: 208 KK------AITHFKVLKQFK--GYSLIECQLETGRTHQ 237
>gi|153953824|ref|YP_001394589.1| pseudouridine synthase [Clostridium kluyveri DSM 555]
gi|219854440|ref|YP_002471562.1| hypothetical protein CKR_1097 [Clostridium kluyveri NBRC 12016]
gi|146346705|gb|EDK33241.1| Predicted pseudouridine synthase [Clostridium kluyveri DSM 555]
gi|219568164|dbj|BAH06148.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 305
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 127/216 (58%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ K GD + ++ + L + EDI LDI+YED +V+VVNKP M+VHPA G TGTL
Sbjct: 52 NYKTKTGDNIKVSLPDAVELNIKGEDIKLDILYEDSDVIVVNKPQGMIVHPASGVYTGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC ED+S I+G + RPGIVHR+DK TSG+LV+
Sbjct: 112 VNALLNHCR---------------EDLS-------GINGIA-RPGIVHRIDKDTSGILVI 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH LSEQ K H++ R YI+L G+ + G ++ PI R ++I+MA + G
Sbjct: 149 AKNDMSHNKLSEQLKDHSMTREYIALVEGIIKEEKGSLDKPIGRHKKDKIKMAVVEG--- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + Y+VI+ LV+ LETGRTHQ
Sbjct: 206 ---GKRAVTHYEVIKRFK--EYTLVKCILETGRTHQ 236
>gi|293401501|ref|ZP_06645644.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|373452301|ref|ZP_09544216.1| RluA family pseudouridine synthase [Eubacterium sp. 3_1_31]
gi|291305139|gb|EFE46385.1| ribosomal large subunit pseudouridine synthase D
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|371966794|gb|EHO84276.1| RluA family pseudouridine synthase [Eubacterium sp. 3_1_31]
Length = 305
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D + + + A+ E + LDI YED +V+V+NKP MVVHPA GN TGTL
Sbjct: 52 NYKIKPKDHITAVFCDEIEMEAKPEQMDLDIRYEDHDVIVINKPKGMVVHPAVGNQTGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+HC +D+S I+G +RPGIVHR+DK T+GLL+V
Sbjct: 112 VNGLLYHC----------------KDLS-------GINGV-LRPGIVHRIDKDTTGLLIV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS+Q + T+ R+Y +L GV G I+ PI RD +R +M A+ +N
Sbjct: 148 AKNDKAHTALSKQLQNKTVNRLYYALVHGVIEHDFGTIDAPIGRDVKDRQKM-AVTATN- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A+ A + +KVIE A LVE RLETGRTHQ
Sbjct: 206 ---AKDARTHFKVIERFA--HYTLVECRLETGRTHQ 236
>gi|205373291|ref|ZP_03226095.1| YlyB [Bacillus coahuilensis m4-4]
Length = 301
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 131/226 (57%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++M++ ++ + D++ + E + L EAED+ LD+ YED +V+VVNKP MVVH
Sbjct: 42 VLVNMEQKRTNYKSQASDVITIEVPEAEVLDVEAEDLNLDVYYEDQDVIVVNKPKGMVVH 101
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPG+ +GTLVNG++HHC +D+ S I+G +RPGIVHR+
Sbjct: 102 PAPGHYSGTLVNGLMHHC----------------KDL-------SGINGV-MRPGIVHRI 137
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK++ +H HL Q ++ R Y++L GV G I+ PI RD +R
Sbjct: 138 DKDTSGLLMVAKNDVAHEHLVNQLVEKSVTRKYMALVHGVIQHDYGTIDAPIGRDSKDRQ 197
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
M + Q +HA + ++V + LVE +LETGRTHQ
Sbjct: 198 SMTIV------DQGKHAVTHFEVKDRFE--QYTLVECQLETGRTHQ 235
>gi|404494630|ref|YP_006718736.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Pelobacter
carbinolicus DSM 2380]
gi|77546623|gb|ABA90185.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Pelobacter
carbinolicus DSM 2380]
Length = 326
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 121/214 (56%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+KGG+ + + + P A +EDIPL I+YED +++V++KP MVVHPAPG+ GTLVN
Sbjct: 55 KLKGGETLTVDVPDPSPAEAVSEDIPLVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVN 114
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC +D+S G +RPGIVHRLDK TSG++V K
Sbjct: 115 ALLHHC----------------QDLSG--------IGGELRPGIVHRLDKDTSGVMVATK 150
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H L+ QFK H+I R YI+L GV + G I+ PI R P +R +M S
Sbjct: 151 TDSAHQSLAAQFKAHSITRRYIALIHGVLTGDRGSIDRPIGRHPTHRKKM-----STTCR 205
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V+ LVE LETGRTHQ
Sbjct: 206 TGRHAVTHWRVLRRFDDDRLTLVELALETGRTHQ 239
>gi|344996038|ref|YP_004798381.1| RluA family pseudouridine synthase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343964257|gb|AEM73404.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
lactoaceticus 6A]
Length = 300
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 124/219 (56%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ VK GD++ I E + L A+DI +++VYED+++ V+NKP MVVHP GN
Sbjct: 42 LKPAYKVKSGDIIKVVIPEPKQLSLVAQDIDIEVVYEDEHLAVINKPCGMVVHPGTGNFE 101
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +LH S SSI+G IRPGIVHRLDK TSGL
Sbjct: 102 NTLVNALLHKFSGRL----------------------SSINGV-IRPGIVHRLDKDTSGL 138
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK + +H LSE K H I+R+Y ++ GV + SG I PI R P NR++MA +P
Sbjct: 139 LIVAKTDEAHIKLSEALKSHQIKRIYYAICEGVLKEDSGVINAPIGRHPVNRLKMAVVP- 197
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E ++ RL+TGRTHQ
Sbjct: 198 -----NGKEAVTYFEVLERF--DKYTFIKLRLKTGRTHQ 229
>gi|37519642|ref|NP_923019.1| pseudouridine synthase [Gloeobacter violaceus PCC 7421]
gi|35210633|dbj|BAC88014.1| glr0073 [Gloeobacter violaceus PCC 7421]
Length = 310
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 125/213 (58%), Gaps = 32/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V GD V TI +PL EA I LDIVYED+ ++V++KP +VVHPAPG++ TLVN
Sbjct: 60 VHSGDAVALTIPAPEPLAIEARPIALDIVYEDEELIVIDKPRGLVVHPAPGHSDDTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC S I+G +RPGIVHRLDK T+GLLVVAK
Sbjct: 120 LLAHC-----------------------RNLSGINGV-LRPGIVHRLDKDTTGLLVVAKT 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H HL Q + T R Y+++ +G P++++G I+ PI R P +R +MA H +
Sbjct: 156 DRAHQHLQTQIQAKTARRDYLAIIAGAPAETTGTIDAPIGRHPVHRQKMAV------HPK 209
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+E L G LVE+ L+TGRTHQ
Sbjct: 210 GRPARTHWRVLERL--GNFTLVEFSLQTGRTHQ 240
>gi|58337436|ref|YP_194021.1| pseudouridine synthase [Lactobacillus acidophilus NCFM]
gi|58254753|gb|AAV42990.1| pseudouridine synthase [Lactobacillus acidophilus NCFM]
Length = 302
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 127/218 (58%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ ++ GD + T+ ++PL AE+IPLDIVYEDD+V+VVNKP MVVHPAPG+
Sbjct: 49 KVSYKIQDGDKIEITVPAVKPLDIVAENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H +D++ E RPGIVHR+DK TSGLL
Sbjct: 109 TLVNALLYHT----------------QDLAQSPE--------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK+ + L +Q T +R+Y ++ G S+ G I+ PI R+P +R +MA +
Sbjct: 145 MIAKNATARESLEQQLANKTNKRIYWAIVHGNFSEEQGSIDAPIGRNPYDRKKMAVVENG 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV++ G +L+E +LETGRTHQ
Sbjct: 205 KK------AITHFKVLKQFK--GYSLIECQLETGRTHQ 234
>gi|258515575|ref|YP_003191797.1| RluA family pseudouridine synthase [Desulfotomaculum acetoxidans
DSM 771]
gi|257779280|gb|ACV63174.1| pseudouridine synthase, RluA family [Desulfotomaculum acetoxidans
DSM 771]
Length = 305
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 132/220 (60%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K++ + +K GD +N TI + + EAE+I LDI +ED++V+V+NKP MVVHPA GN
Sbjct: 47 KVAAKYKIKPGDYINLTIPDPVGVSVEAENIALDIYFEDEDVIVINKPRGMVVHPAEGNY 106
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
TGT+VN +L+HC D+ S I+G +RPGIVHRLDK TSG
Sbjct: 107 TGTMVNALLYHC----------------RDL-------SGINGV-LRPGIVHRLDKDTSG 142
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL+VAK++ +H +L+ Q + + R Y++L G Q +G ++ PI RD +R +MA
Sbjct: 143 LLMVAKNDLAHNNLAAQLEKRLVNRRYLALVHGNLKQDAGTVDAPIGRDACSRQKMAVTD 202
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +R A + +KV++ G L+E +LETGRTHQ
Sbjct: 203 RN-----SRSAVTHFKVLKRF--GRYTLLELKLETGRTHQ 235
>gi|417959259|ref|ZP_12602103.1| Pseudouridine synthase, partial [Candidatus Arthromitus sp. SFB-1]
gi|380333788|gb|EIA24302.1| Pseudouridine synthase, partial [Candidatus Arthromitus sp. SFB-1]
Length = 279
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 128/215 (59%), Gaps = 32/215 (14%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ VK GD+V+ +++ L A+DI LDIVYED +V++VNK M+VHPA TLV
Sbjct: 31 YKVKIGDVVSILDFDIKRLDILAQDIFLDIVYEDSDVIIVNKEQGMIVHPAQNIYKDTLV 90
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N ++++C +D+S SI+G RPGI+HR+DK TSGLLVVA
Sbjct: 91 NALMYYC----------------KDLS-------SINGVE-RPGIIHRIDKDTSGLLVVA 126
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K++ SH LSEQFK+H+I R Y++L GV +S G I+ I R+P NRI+MA +
Sbjct: 127 KNDLSHKFLSEQFKIHSIRREYVALVHGVIKKSEGLIKTNIGRNPQNRIKMAVVQ----- 181
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + YKV+ LV+ +L TGRTHQ
Sbjct: 182 -KGKEAITEYKVLR--RYRRCTLVKCKLHTGRTHQ 213
>gi|347549239|ref|YP_004855567.1| hypothetical protein LIV_1819 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982310|emb|CBW86304.1| Conserved hypothetical protein [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 302
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 128/216 (59%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ + E + L AEDIPLDI YED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHLEVREPETLEVLAEDIPLDIYYEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC +D+ S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC----------------KDL-------SGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVR---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++VIE L G L+ +L+TGRTHQ
Sbjct: 203 --DGKEARTHFEVIERLE--GYTLINCKLDTGRTHQ 234
>gi|365839179|ref|ZP_09380425.1| pseudouridine synthase, RluA family [Anaeroglobus geminatus F0357]
gi|364565366|gb|EHM43093.1| pseudouridine synthase, RluA family [Anaeroglobus geminatus F0357]
Length = 303
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 123/219 (56%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ V GD + E E+IPLDIVYED +++V+NK MVVHPA GN
Sbjct: 48 VKANYKVAAGDKFAVVVEAATAFSVEPENIPLDIVYEDRHIIVINKARGMVVHPAAGNPD 107
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC +E S I+G IRPGIVHRLDK TSG+
Sbjct: 108 GTLVNALLYHCG---------------------KELSG-INGV-IRPGIVHRLDKDTSGI 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
+V AK + +H L+EQ K H+ R Y +L G ++ GRIE PI R P +RI+MA
Sbjct: 145 MVAAKTDMAHKALAEQIKAHSARRTYKALVHGNIVEAKGRIEAPIGRHPKDRIKMAV--- 201
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ K G R A + + V+E G L+E RLETGRTHQ
Sbjct: 202 NLKDG--REAVTHFTVLERY--GDYTLIECRLETGRTHQ 236
>gi|334121150|ref|ZP_08495224.1| pseudouridine synthase, RluA family [Microcoleus vaginatus FGP-2]
gi|333455436|gb|EGK84085.1| pseudouridine synthase, RluA family [Microcoleus vaginatus FGP-2]
Length = 321
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 122/214 (57%), Gaps = 30/214 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+VK GD + + E+Q + E IPLDI+YEDD+++++NKPA +VVHPA G+ GTLVN
Sbjct: 66 SVKTGDRIQIILPEIQATNLQPEAIPLDILYEDDSLIIINKPAGLVVHPAAGHQDGTLVN 125
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HC L + G RPGIVHRLDK T+G + +AK
Sbjct: 126 ALLAHCPLAEI-------------------------GGVQRPGIVHRLDKDTTGAIAIAK 160
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H HL Q K T R Y+ + G P+ +G I++PI R P +R +MA +P K G
Sbjct: 161 TDIAHQHLQAQLKTKTARREYLGIVYGAPNSETGTIDLPIGRHPTDRKKMAVVP-VEKGG 219
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +K+ E + G L+ ++LETGRTHQ
Sbjct: 220 --RPAVTHWKIKEKI--GNYCLMHYQLETGRTHQ 249
>gi|319781137|ref|YP_004140613.1| RluA family pseudouridine synthase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167025|gb|ADV10563.1| pseudouridine synthase, RluA family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 346
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 126/219 (57%), Gaps = 35/219 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G+ V+ T+ E +P + E+I LD++YEDD ++V+NKPA +VVHP GN TGTLVN ++H
Sbjct: 73 GESVSVTMPEPEPAEPQGENIALDVLYEDDELIVINKPAGLVVHPGAGNWTGTLVNALIH 132
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC + S I G RPGIVHRLDK TSG++VVAK + +
Sbjct: 133 HCG----------------------DSLSGIGGVR-RPGIVHRLDKETSGVMVVAKTDRA 169
Query: 152 HAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
H LSE F H +ER Y++L G+P + +GR++ P+ R +R+R A +P
Sbjct: 170 HKSLSEAFADHGLTGDLERAYLALVWGIPQRPTGRVDAPLGR-AADRVRRAVVPEGRD-- 226
Query: 208 QARHAASRYKVIEILAG-----GGSALVEWRLETGRTHQ 241
ARHA + + V E +++VE RLETGRTHQ
Sbjct: 227 DARHAVTHFAVQERFGESQQEFATASMVECRLETGRTHQ 265
>gi|146296933|ref|YP_001180704.1| RluA family pseudouridine synthase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410509|gb|ABP67513.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 300
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 124/219 (56%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ VK GD++ I E + L A+DI +++VYED+++ V+NKP MVVHP GN
Sbjct: 42 LKPAYKVKSGDIIKVVIPEPKQLSLVAQDIDIEVVYEDEHLAVINKPRGMVVHPGAGNFE 101
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +LH S SSI+G IRPGIVHRLDK TSGL
Sbjct: 102 NTLVNALLHKFSGRL----------------------SSINGV-IRPGIVHRLDKDTSGL 138
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK + +H LSE K H I+R+Y ++ GV + SG I PI R P NR++MA +P
Sbjct: 139 LIVAKTDEAHIKLSEALKSHQIKRIYYAICEGVLKEDSGVINAPIGRHPVNRLKMAVVP- 197
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E ++ RL+TGRTHQ
Sbjct: 198 -----NGKEAVTYFEVLERF--DKYTFIKLRLKTGRTHQ 229
>gi|346992351|ref|ZP_08860423.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp.
TW15]
Length = 344
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 130/219 (59%), Gaps = 35/219 (15%)
Query: 35 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 94
+ T++E + EDIPL++VYEDD+++V+NKPA MVVHPAPG+ GTLVN +LHHC
Sbjct: 66 IGITVAEAEDSHIGPEDIPLEVVYEDDDLIVINKPAGMVVHPAPGSPNGTLVNALLHHC- 124
Query: 95 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAH 154
ED+S G RPGIVHR+DK TSGLLVVAK + +H
Sbjct: 125 --------------GEDLSG--------VGGVKRPGIVHRIDKETSGLLVVAKSDAAHHG 162
Query: 155 LSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPGSNKHGQA 209
L+ QF+ H++ER Y ++ GVP + R+ +S +P N +R+ A +++ QA
Sbjct: 163 LAAQFEAHSVERYYRAICYGVPDANDPRLRGIKGVSFEPGNIMRLTTQLARHKTDRQKQA 222
Query: 210 ------RHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
RHA +R +++E+ GS +LVE LETGRTHQ
Sbjct: 223 VLFHGGRHAVTRARIVEVFGSPGSLSLVECWLETGRTHQ 261
>gi|270308540|ref|YP_003330598.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Dehalococcoides sp. VS]
gi|270154432|gb|ACZ62270.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides sp. VS]
Length = 302
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD + IS P +AEDIPL+I+++D ++L++NKP + VHPAPG+ TL
Sbjct: 52 SLKLKNGDTITIEISPETPPELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
+NG+L E F D +RPGIVHRLDK TSGLL+V
Sbjct: 112 INGVL-------ALEPKMEDFDDP-----------------LRPGIVHRLDKDTSGLLLV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ + A+LS QFK T+ + Y++L G + G IE P+ RDP NR ++A + SN
Sbjct: 148 AKNRETLANLSAQFKERTVRKYYLTLVKGELHPAEGFIEAPLGRDPQNRQKIAVV--SN- 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + YKV+ + G +L+E +LETGRTHQ
Sbjct: 205 ---GRHARTGYKVLRYIQ--GYSLLEVKLETGRTHQ 235
>gi|120437019|ref|YP_862705.1| ribosomal large subunit pseudouridine synthase D [Gramella forsetii
KT0803]
gi|117579169|emb|CAL67638.1| ribosomal large subunit pseudouridine synthase D [Gramella forsetii
KT0803]
Length = 354
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 133/229 (58%), Gaps = 33/229 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRA--EAEDIPLDIVYEDDNVLVVNKPAHMV 73
++++ D + ++ VKGGD V E P EDIPLDIVYEDD +LVVNK A MV
Sbjct: 62 IYVNGDTVKQNYKVKGGDTVQVMF-EHPPYEYLLVPEDIPLDIVYEDDTLLVVNKQAGMV 120
Query: 74 VHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 133
VHP GN +GTL+N ++HH F + + +S RPG+VH
Sbjct: 121 VHPGHGNYSGTLINALVHH-------------------------FDNLPNNSSDRPGLVH 155
Query: 134 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN 193
R+DK TSGLLVVAK E + AHLS+QF + ER Y+++ G ++ G IE I R+P N
Sbjct: 156 RIDKDTSGLLVVAKTEEAMAHLSKQFFDKSSEREYVAIVWGNLAEEEGTIEGNIGRNPRN 215
Query: 194 RIRMAAIPGSN-KHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R++ G + ++G+A A + YKV+E L G LV +LETGRTHQ
Sbjct: 216 RLQNIVFEGDDVENGKA--AVTHYKVLERL--GYVTLVACKLETGRTHQ 260
>gi|159899422|ref|YP_001545669.1| RluA family pseudouridine synthase [Herpetosiphon aurantiacus DSM
785]
gi|159892461|gb|ABX05541.1| pseudouridine synthase, RluA family [Herpetosiphon aurantiacus DSM
785]
Length = 323
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 125/213 (58%), Gaps = 33/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ GD + + +P AED+PLD++YED +VL+VNK A MVVHPAPG+ TGTLVN
Sbjct: 59 VQIGDQIEIFLPLAKPTDIVAEDLPLDVIYEDADVLLVNKAAGMVVHPAPGHTTGTLVNA 118
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L+ P L +S +RPGIVHRLDK TSGLLV+AK
Sbjct: 119 LLYRY--PHLTTS-----------------------GDLRPGIVHRLDKETSGLLVIAKH 153
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ + L+EQ + + Y++L G + +G I+ PI R+PNNR+RM +P +
Sbjct: 154 DQARMMLTEQQMARRMHKKYLALVEGHWREPTGTIDAPIGRNPNNRLRMMVMP------E 207
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + Y+V+E+L G +LV LETGRTHQ
Sbjct: 208 GRYAVTHYQVLEVL--GPYSLVRATLETGRTHQ 238
>gi|402312056|ref|ZP_10830986.1| pseudouridine synthase, RluA family [Lachnospiraceae bacterium
ICM7]
gi|400370717|gb|EJP23699.1| pseudouridine synthase, RluA family [Lachnospiraceae bacterium
ICM7]
Length = 304
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 133/219 (60%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD+V+ I + +PL E+IPLDIVYEDD+V+++NKP MVVHPA G+ +
Sbjct: 49 VKANYRLRDGDIVDLAIPKPEPLEILPENIPLDIVYEDDDVILINKPKGMVVHPAAGHYS 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC ++ S I+G +RPGIVHR+D T+G+
Sbjct: 109 GTLVNALLYHC----------------------KDNLSGINGV-LRPGIVHRIDMDTTGI 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
++ K++++H H+++Q H+I R Y+++ +G G ++ PI+R N+R++MA
Sbjct: 146 IIACKNDNAHQHIAKQLAEHSITRKYVAIVTGNIKDDEGTVDAPIARSKNDRMKMAV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+K G + A + YKV+E L +E LETGRTHQ
Sbjct: 203 -DKDG--KRAVTHYKVLERL--NNYTYIECVLETGRTHQ 236
>gi|125973425|ref|YP_001037335.1| ribosomal large subunit pseudouridine synthase D [Clostridium
thermocellum ATCC 27405]
gi|256004403|ref|ZP_05429384.1| pseudouridine synthase, RluA family [Clostridium thermocellum DSM
2360]
gi|281417627|ref|ZP_06248647.1| pseudouridine synthase, RluA family [Clostridium thermocellum JW20]
gi|385778659|ref|YP_005687824.1| RluA family pseudouridine synthase [Clostridium thermocellum DSM
1313]
gi|419722986|ref|ZP_14250122.1| pseudouridine synthase, RluA family [Clostridium thermocellum AD2]
gi|419724666|ref|ZP_14251725.1| pseudouridine synthase, RluA family [Clostridium thermocellum YS]
gi|125713650|gb|ABN52142.1| pseudouridine synthase, RluA family [Clostridium thermocellum ATCC
27405]
gi|255991687|gb|EEU01788.1| pseudouridine synthase, RluA family [Clostridium thermocellum DSM
2360]
gi|281409029|gb|EFB39287.1| pseudouridine synthase, RluA family [Clostridium thermocellum JW20]
gi|316940339|gb|ADU74373.1| pseudouridine synthase, RluA family [Clostridium thermocellum DSM
1313]
gi|380771885|gb|EIC05746.1| pseudouridine synthase, RluA family [Clostridium thermocellum YS]
gi|380781043|gb|EIC10705.1| pseudouridine synthase, RluA family [Clostridium thermocellum AD2]
Length = 303
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D + I E Q L AEDI + I+YED++++VV+KP MVVHPA GN +GTL
Sbjct: 50 NYKIKQNDEILARIPEPQVLDVVAEDIDVPILYEDEHIIVVDKPKGMVVHPAAGNYSGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC S+I+G IRPGIVHR+DK TSG+LVV
Sbjct: 110 VNALLKHCGTNL----------------------SNINGI-IRPGIVHRIDKDTSGVLVV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK +H LSE+ K H IERVYI++ G+ + G+I+ PI R P +R +MA + K
Sbjct: 147 AKSNAAHEGLSEKLKDHDIERVYIAVVHGIIREDYGKIDAPIGRHPVDRKKMAV---NTK 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G R A +R+KV+E + +E LETGRTHQ
Sbjct: 204 NG--RRAVTRFKVLERFK--DATYIEATLETGRTHQ 235
>gi|404482194|ref|ZP_11017421.1| RluA family pseudouridine synthase [Clostridiales bacterium
OBRC5-5]
gi|404344355|gb|EJZ70712.1| RluA family pseudouridine synthase [Clostridiales bacterium
OBRC5-5]
Length = 304
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 131/216 (60%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD+VN I + +PL E+IPLDIVYEDD+V+++NKP MVVHPA G+ +GTL
Sbjct: 52 NYRLRDGDIVNLAIPKPEPLEILPENIPLDIVYEDDDVILINKPKGMVVHPAAGHYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC ++ S I+G +RPGIVHR+D T+G+++
Sbjct: 112 VNALLYHC----------------------KDNLSGINGV-LRPGIVHRIDMDTTGIIIA 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
K++++H H+++Q H+I R Y+++ +G G ++ PI+R N+R +MA +K
Sbjct: 149 CKNDNAHQHIAKQLAEHSITRKYVAIATGNIKDDEGTVDAPIARSKNDRKKMAV----DK 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + YKV+E L +E LETGRTHQ
Sbjct: 205 DG--KRAVTHYKVLERL--NNYTYIECVLETGRTHQ 236
>gi|288962534|ref|YP_003452829.1| ribosomal large subunit pseudouridine synthase D [Azospirillum sp.
B510]
gi|288914800|dbj|BAI76285.1| ribosomal large subunit pseudouridine synthase D [Azospirillum sp.
B510]
Length = 363
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 123/216 (56%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S VK G + + +DIPLD+VYED +VLVV+KPA +VVHPA GN GTL
Sbjct: 91 SQRVKYGQIFELRMPGSAAAEPLPQDIPLDVVYEDADVLVVDKPAGLVVHPAAGNPDGTL 150
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + S I G RPGIVHRLDK TSGL+VV
Sbjct: 151 VNALLAHCG----------------------DSLSGIGGVR-RPGIVHRLDKDTSGLMVV 187
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS+QF T+ R Y++L GVP+ + GRIE I R +R +MA + G K
Sbjct: 188 AKNDRAHHGLSDQFSDRTLSRTYLALVWGVPNPTQGRIEGNIGRSSADRKKMAVVTGGGK 247
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A ++Y+V++ G ++LVE LETGRTHQ
Sbjct: 248 -----PAGTKYRVVKSF-GMAASLVECVLETGRTHQ 277
>gi|95929105|ref|ZP_01311850.1| Pseudouridine synthase, RluD [Desulfuromonas acetoxidans DSM 684]
gi|95135006|gb|EAT16660.1| Pseudouridine synthase, RluD [Desulfuromonas acetoxidans DSM 684]
Length = 350
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 126/214 (58%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
++GG+ V T+ + Q + ED+PL ++YED +++V+NK A MVVHPA G+++GTLVN
Sbjct: 55 KLRGGETVCVTLPQAQSVETLPEDLPLTVLYEDSDLIVINKAAGMVVHPAAGHSSGTLVN 114
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L+HC D+S G +RPGIVHRLDK TSG++V K
Sbjct: 115 ALLYHC----------------HDLSG--------VGGELRPGIVHRLDKDTSGVMVATK 150
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
++ +H HL+ QFK H+I+R Y++L G + G I+ PI R P +R +M ++K
Sbjct: 151 NDVTHNHLAAQFKDHSIQRRYVALVHGQVQNARGTIDAPIGRHPTHRKKM-----TSKGR 205
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV+ +L+E RLETGRTHQ
Sbjct: 206 GGRRAVTHWKVLRRYDADRLSLLEMRLETGRTHQ 239
>gi|302871828|ref|YP_003840464.1| RluA family pseudouridine synthase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574687|gb|ADL42478.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
obsidiansis OB47]
Length = 303
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 125/219 (57%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ V+ GD++ I E + L A+DI +++VYED+++ V+NKP MVVHP GN
Sbjct: 42 LKPAYKVRSGDIIRIVIPEPKQLSLVAQDIDIEVVYEDEHLAVINKPRGMVVHPGAGNFE 101
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +LH S SSI+G IRPGIVHRLDK TSGL
Sbjct: 102 NTLVNALLHKFSGKL----------------------SSINGV-IRPGIVHRLDKDTSGL 138
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK + +H LSE K H I+R+Y ++ GV + SG ++ PI R P NR++MA IP
Sbjct: 139 LIVAKTDEAHIKLSEALKSHQIKRIYYAICEGVLKEDSGVVDAPIGRHPVNRLKMAVIP- 197
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E V+ RL+TGRTHQ
Sbjct: 198 -----NGKQAVTYFEVLE--RYDKYTFVKLRLKTGRTHQ 229
>gi|395242328|ref|ZP_10419325.1| Pseudouridine synthase [Lactobacillus pasteurii CRBIP 24.76]
gi|394480060|emb|CCI85565.1| Pseudouridine synthase [Lactobacillus pasteurii CRBIP 24.76]
Length = 301
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 132/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K S+ V+ GD + + L+PL EAEDIPLDIVYED +V+VVNKP MVVH
Sbjct: 41 ILVNDKKEKASYKVQAGDKIVVNVPALEPLNVEAEDIPLDIVYEDQDVIVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
P+ G+ TLVN +L+H LA+S E F RPGIVHR+
Sbjct: 101 PSAGHPNYTLVNALLYHTK--DLAAS-PEGF---------------------RPGIVHRI 136
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL++AK+ + L +Q +R+Y+++ G +S+G+I+ PI R+P+NR
Sbjct: 137 DKDTSGLLMIAKNPKARESLEDQLAHKLNKRLYLAIVHGNFGESAGKIDAPIGRNPSNRK 196
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA + + A + +KV+E G +L++ +LETGRTHQ
Sbjct: 197 QMAVVE------NGKSAVTHFKVLEQFK--GYSLIQCQLETGRTHQ 234
>gi|345021939|ref|ZP_08785552.1| hypothetical protein OTW25_11464 [Ornithinibacillus scapharcae
TW25]
Length = 299
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 128/216 (59%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ + GD++ + E++ L + E+IPLDIVYED +V+V+NKP MVVHP+ G+ +GTL
Sbjct: 51 NYKCQQGDVITWQLPEVKELEIQPENIPLDIVYEDQDVIVINKPKGMVVHPSAGHQSGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC +D+S I+G RPGIVHR+DK TSGLLVV
Sbjct: 111 VNALLYHC----------------KDLS-------GINGVE-RPGIVHRIDKDTSGLLVV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +HA L+EQ +ER Y ++ GV + +G ++ PI RDP +R RM +
Sbjct: 147 AKNDKAHASLAEQLSKKDVERRYEAVVHGVINHDTGMVDAPIGRDPKDRQRMGIV----- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + + V++ +E +LETGRTHQ
Sbjct: 202 -DNGRHAVTHFLVLQRFK--EFTHIECKLETGRTHQ 234
>gi|417964285|ref|ZP_12606036.1| Pseudouridine synthase, partial [Candidatus Arthromitus sp. SFB-4]
gi|380342988|gb|EIA31414.1| Pseudouridine synthase, partial [Candidatus Arthromitus sp. SFB-4]
Length = 264
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 128/215 (59%), Gaps = 32/215 (14%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ VK GD+V+ +++ L A+DI LDIVYED +V++VNK M+VHPA TLV
Sbjct: 16 YKVKIGDVVSILDFDIKRLDILAQDIFLDIVYEDSDVIIVNKEQGMIVHPAQNIYKDTLV 75
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N ++++C +D+S SI+G RPGI+HR+DK TSGLLVVA
Sbjct: 76 NALMYYC----------------KDLS-------SINGVE-RPGIIHRIDKDTSGLLVVA 111
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K++ SH LSEQFK+H+I R Y++L GV +S G I+ I R+P NRI+MA +
Sbjct: 112 KNDLSHKFLSEQFKIHSIRREYVALVHGVIKKSEGLIKTNIGRNPQNRIKMAVVQ----- 166
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + YKV+ LV+ +L TGRTHQ
Sbjct: 167 -KGKEAITEYKVLR--RYRRCTLVKCKLHTGRTHQ 198
>gi|187734524|ref|YP_001876636.1| RluA family pseudouridine synthase [Akkermansia muciniphila ATCC
BAA-835]
gi|187424576|gb|ACD03855.1| pseudouridine synthase, RluA family [Akkermansia muciniphila ATCC
BAA-835]
Length = 323
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 125/214 (58%), Gaps = 30/214 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V GD + I E +P A+ +DIPLDI+YED++V+V+NK + MVVHPA GN GT+VN
Sbjct: 52 VSRGDSITVRIPEPEPAEAQPQDIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNA 111
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+LHHC D+ S I G RPGIVHRLDK TSG LV+AK+
Sbjct: 112 LLHHCG----------------DL-------SGIGGVE-RPGIVHRLDKDTSGCLVIAKN 147
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI-PGSNKHG 207
+ +H L+ QF + E+ Y+++ G+PSQSSG + I R P NR++MA + PGS K
Sbjct: 148 DGAHQSLTAQFAARSTEKRYLAVVQGIPSQSSGTVFTHIGRHPVNRLKMAVVNPGSGK-- 205
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y ++ S+LV L TGRTHQ
Sbjct: 206 ---AAITDYDLLCADPSTDSSLVLCTLHTGRTHQ 236
>gi|345859993|ref|ZP_08812322.1| pseudouridine synthase, RluA family protein [Desulfosporosinus sp.
OT]
gi|344326854|gb|EGW38303.1| pseudouridine synthase, RluA family protein [Desulfosporosinus sp.
OT]
Length = 334
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 127/216 (58%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD + L+ AE E+IPLDI+YED++VLVVNK MVVHPAPG TGT+
Sbjct: 82 NYKVRQGDQIEVEFPILRESTAEPENIPLDILYEDEDVLVVNKRQGMVVHPAPGAWTGTM 141
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC S I+G +RPGIVHR+DK TSG+LVV
Sbjct: 142 VNALLFHC-----------------------RNLSGINGV-LRPGIVHRIDKDTSGILVV 177
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K H++ R Y++L GV + SG ++ PI RDP+ R RMA + +K
Sbjct: 178 AKNDIAHQGLAVQLKEHSMARKYLALVHGVVLEPSGTVDAPIGRDPSERKRMAVVMHHSK 237
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y V+E + + +E RLETGRTHQ
Sbjct: 238 -----PAVTHYTVLERFS--EATYLEVRLETGRTHQ 266
>gi|410667646|ref|YP_006920017.1| pseudouridylate synthase RluA [Thermacetogenium phaeum DSM 12270]
gi|409105393|gb|AFV11518.1| pseudouridylate synthase RluA [Thermacetogenium phaeum DSM 12270]
Length = 313
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 127/216 (58%), Gaps = 28/216 (12%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V+ GD+V + + + + E+IPLDI+YED+++LV+NKP +VVHPA G+ +GTL
Sbjct: 55 SYKVRCGDVVTMRVPPPEEITLKPEEIPLDIIYEDEDLLVINKPQGLVVHPAAGHKSGTL 114
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC P L+ G +RPGIVHRLDK TSGL++V
Sbjct: 115 VNAVLNHC--PKLSGI----------------------GGYLRPGIVHRLDKDTSGLILV 150
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
+K + +H L+ Q K +I+R Y++L G + G I+ P+ RDP NR +MA +P
Sbjct: 151 SKSDLAHQELTRQLKERSIKREYLALVHGEVKEDKGVIDAPVGRDPRNRKKMAVLPEGAP 210
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A+ A + Y+V E A G L+ LETGRTHQ
Sbjct: 211 --GAKSARTSYRVRERFA--GYTLLGVSLETGRTHQ 242
>gi|312143925|ref|YP_003995371.1| RluA family pseudouridine synthase [Halanaerobium hydrogeniformans]
gi|311904576|gb|ADQ15017.1| pseudouridine synthase, RluA family [Halanaerobium
hydrogeniformans]
Length = 304
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ +K D + I + + +A DI LDI+YED +++++NK A MVVHPAPG+ T+
Sbjct: 52 SYLIKEADEIKVIIDKAKKSSIKAVDIELDIIYEDQDIIIINKDADMVVHPAPGHYDDTI 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L + + D+S +I+G RPGIVHRLDK TSGLL+V
Sbjct: 112 VNALLAYTN----------------DLS-------AINGVK-RPGIVHRLDKDTSGLLLV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH LS QFK +++ Y++L G+ +G+I+ PI R PN R +MA +
Sbjct: 148 AKNDKSHKELSRQFKKREVDKYYLALLKGILPYKTGKIDAPIGRHPNQRKKMAV-----R 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++ A SR+K++E + LVE ++ETGRTHQ
Sbjct: 203 KRKSKKAVSRFKILE--SFKNHTLVEVKIETGRTHQ 236
>gi|116514036|ref|YP_812942.1| pseudouridylate synthase, 23S RNA-specific [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|385815689|ref|YP_005852080.1| Pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418035576|ref|ZP_12674032.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|116093351|gb|ABJ58504.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
gi|325125726|gb|ADY85056.1| Pseudouridine synthase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|354690106|gb|EHE90061.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 304
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K VS+ V+ D++ + L+PL+ EAE+IPLDIVYED +V+VVNKP MVVH
Sbjct: 41 ILVNGKKSKVSYKVQKDDLIQVIVLPLEPLKLEAENIPLDIVYEDKDVIVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ + TLVN +L+H D++D E RPGIVHR+
Sbjct: 101 PAAGHPSHTLVNALLYHT----------------RDLADSPE--------GFRPGIVHRI 136
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK+ + L +Q + +R Y+++ G ++ G I+ PI R+P +R
Sbjct: 137 DKDTSGLLMVAKNAAARESLEKQLAAKSNKRQYLAIVHGNFAEEEGTIDAPIGRNPKDRK 196
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA + + + A + +KV+E G +LVE +LETGRTHQ
Sbjct: 197 QMAVVE------KGKSAVTHFKVLEQYQ--GYSLVECQLETGRTHQ 234
>gi|414175172|ref|ZP_11429576.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
gi|410889001|gb|EKS36804.1| RluA family pseudouridine synthase [Afipia broomeae ATCC 49717]
Length = 335
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 126/224 (56%), Gaps = 37/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+++VK GD + + P E EDIPLDIV+EDD+++V++KP ++VVHPA G+ TGTL
Sbjct: 59 AYHVKAGDTITIDVPPAAPAEPEGEDIPLDIVFEDDDIIVIDKPKNLVVHPAAGHETGTL 118
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC S S G RPGIVHRLDK T+GL+V
Sbjct: 119 VNALIAHCG-----------------------ASLSGIGGVRRPGIVHRLDKDTTGLMVA 155
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++ +H LS QF H + R Y++ GVP++ SG I+ PI R P+ R +MA
Sbjct: 156 AKNDRAHQSLSAQFADHGRTGEMRRGYMAFVWGVPNRKSGTIDQPIDRHPHTREKMAVRQ 215
Query: 202 GSNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
G R A + ++VIE G +AL+ +LETGRTHQ
Sbjct: 216 G------GRDAVTHWEVIESFTGKDGKPVAALLACQLETGRTHQ 253
>gi|427737025|ref|YP_007056569.1| ribosomal large subunit pseudouridine synthase D [Rivularia sp. PCC
7116]
gi|427372066|gb|AFY56022.1| ribosomal large subunit pseudouridine synthase D [Rivularia sp. PCC
7116]
Length = 309
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 123/219 (56%), Gaps = 31/219 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S +++K GD++ I QPL + E+IPLDI+YED+ +L++NKPA +VVHPAPG+ G
Sbjct: 52 SKKNSLKQGDLIVLEIPTAQPLELQPENIPLDILYEDEQILILNKPAGLVVHPAPGHPNG 111
Query: 84 TLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +L HC +LP + G RPGIVHRLDK T+G
Sbjct: 112 TLVNAVLAHCPNLPGI-------------------------GGVQRPGIVHRLDKDTTGA 146
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
+ +AK E +H L Q K T R Y+ + G Q G I +PI R P R +MA +P
Sbjct: 147 IAIAKTELAHHSLQAQLKAKTARREYLGVVYGATKQPEGTINLPIGRHPKERKKMAVVP- 205
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K G R A + +++ E L G L+ ++LETGRTHQ
Sbjct: 206 VEKGG--REAVTHWQIKERL--GNYTLMHFQLETGRTHQ 240
>gi|312127570|ref|YP_003992444.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
hydrothermalis 108]
gi|311777589|gb|ADQ07075.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
hydrothermalis 108]
Length = 299
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 123/219 (56%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ VK GD++ I E + L A+DI +++VYED+++ V+NKP MVVHP GN
Sbjct: 42 LKPAYKVKSGDIIKVVIPEPKQLSIVAQDINIEVVYEDEHLAVINKPRGMVVHPGAGNFE 101
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +LH SSI+G IRPGIVHRLDK TSGL
Sbjct: 102 NTLVNALLHKFRGRL----------------------SSINGV-IRPGIVHRLDKDTSGL 138
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK + +H LSE K H I+R+Y ++ GV + SG I PI R P NR++MA +P
Sbjct: 139 LVVAKTDEAHVKLSEALKSHQIKRIYYAICEGVLKEDSGVINAPIGRHPVNRLKMAVVP- 197
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E V+ RL+TGRTHQ
Sbjct: 198 -----NGKEAVTYFEVLERF--DKYTFVKLRLKTGRTHQ 229
>gi|295425512|ref|ZP_06818204.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
amylolyticus DSM 11664]
gi|295064803|gb|EFG55719.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
amylolyticus DSM 11664]
Length = 302
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK GD + T+ ++PL E+IPLDI+YED++V+VVNKP MVVHPA G+ TL
Sbjct: 51 SYKVKDGDAIEVTVPAVKPLDVIPENIPLDIIYEDNDVIVVNKPQGMVVHPAAGHPDHTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H LASS E F RPGIVHR+DK TSGLL++
Sbjct: 111 VNALLYHTK--DLASS-PEGF---------------------RPGIVHRIDKDTSGLLMI 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ L +Q T +R+Y+++ G ++ G I+ PI+R+P++R +M + G
Sbjct: 147 AKNSQVRESLEDQLAHKTNKRLYLAIVHGNFAEEEGTIDAPIARNPHDRKKMGVVAG--- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HA + +KVIE G +L++ +LETGRTHQ
Sbjct: 204 ---GKHAVTHFKVIEQFK--GYSLIQCKLETGRTHQ 234
>gi|229031524|ref|ZP_04187524.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1271]
gi|228729813|gb|EEL80793.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1271]
Length = 302
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 129/219 (58%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI + + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKENDEITVTIPDPEELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G +HA + ++VIE LVE RLETGRTHQ
Sbjct: 203 -DENG--KHAVTHFQVIERFK--DFTLVECRLETGRTHQ 236
>gi|23098941|ref|NP_692407.1| hypothetical protein OB1486 [Oceanobacillus iheyensis HTE831]
gi|22777169|dbj|BAC13442.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 303
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 131/227 (57%), Gaps = 34/227 (14%)
Query: 17 FLSMDKLSVSHNVKG--GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+ ++ +SV N K GD + I E +PL E E+IPLD+VYED +V+V+NKP MVV
Sbjct: 41 LVEVNGVSVKANYKCVEGDALTWEIPETKPLILEPENIPLDVVYEDSDVIVINKPKGMVV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HP+ G+ TGTLV+ +L+HC DD S I+G RPGIVHR
Sbjct: 101 HPSAGHQTGTLVHALLYHC--------------------DD---LSGINGIE-RPGIVHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLLVVAK++ +H LS+Q + ++R Y+++ G +G I+ PI RDP +R
Sbjct: 137 IDKDTSGLLVVAKNDVAHQKLSDQLQQKQLKRKYVAIVHGEIGHDTGLIDAPIGRDPKDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA + + A + ++VIE VE +LETGRTHQ
Sbjct: 197 QKMAVV------DNGKSAITHFRVIERFP--DYTFVECQLETGRTHQ 235
>gi|226313367|ref|YP_002773261.1| pseudouridine synthase [Brevibacillus brevis NBRC 100599]
gi|226096315|dbj|BAH44757.1| pseudouridine synthase [Brevibacillus brevis NBRC 100599]
Length = 309
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ D V + + + + E++ LDIVYED +V+VVNKP +VVHPAPG+ +GTL
Sbjct: 58 NYKLQAEDEVTLRVPPPKEMAIQPEEMSLDIVYEDSDVVVVNKPRGLVVHPAPGHYSGTL 117
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L HC +D+S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 118 VNGLLAHC----------------KDLS-------GINGV-LRPGIVHRIDKDTSGLLMV 153
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ K HT+ R Y++L GV G IE PI RDP NR +MA +
Sbjct: 154 AKNDKAHMGLAEQLKAHTVNRKYVALVHGVIPHEMGTIEAPIGRDPKNRQQMAVV----- 208
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ A + + V+E +VE +LETGRTHQ
Sbjct: 209 FENSKPAVTHFIVLERFK--EYTMVELKLETGRTHQ 242
>gi|172057958|ref|YP_001814418.1| RluA family pseudouridine synthase [Exiguobacterium sibiricum
255-15]
gi|171990479|gb|ACB61401.1| pseudouridine synthase, RluA family [Exiguobacterium sibiricum
255-15]
Length = 307
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 129/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ + G + + I E L EDIPLD+VYED +V+V+NKP MVVHPA G+ +GTL
Sbjct: 52 NYKMSGTEEILVRIPEAVELEVLPEDIPLDVVYEDSDVIVINKPKGMVVHPAAGHVSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC +D+ S I+G RPGIVHR+DK TSGLL+V
Sbjct: 112 VNALLHHC----------------QDL-------SGINGVK-RPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L++Q K T ER+YI+L G G IE P+ RD N+R RM ++K
Sbjct: 148 AKNDLAHESLAQQLKDKTTERLYIALVHGEIPHELGTIEAPVGRDKNDRQRMTV---TDK 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +A A + ++V+E G +VE +LETGRTHQ
Sbjct: 205 NSKA--AVTHFRVLERYE--GFTVVECKLETGRTHQ 236
>gi|407975175|ref|ZP_11156081.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
indicus C115]
gi|407429260|gb|EKF41938.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
indicus C115]
Length = 349
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 122/225 (54%), Gaps = 34/225 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
H V G+ + E +P E IPLDI+YED +++VVNKPA +VVHPAPGN TGTL
Sbjct: 69 KHKVASGETYGLEMPEAEPAEPLPEPIPLDILYEDADLVVVNKPAGLVVHPAPGNWTGTL 128
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC + S I G RPGIVHRLD+ TSG++VV
Sbjct: 129 VNALLHHCG----------------------DTLSGIGGVR-RPGIVHRLDRDTSGVMVV 165
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK + +H LSE F H +ER Y +L G P + +G I+ + R +R A +P
Sbjct: 166 AKTDRAHRALSEAFADHGRSGDLERAYEALVWGAPDRMAGSIDAALGRHAQSRTLRAVVP 225
Query: 202 GSNKHGQARHAASRYKVIEILAGGG-----SALVEWRLETGRTHQ 241
ARHA + Y+V + G +AL+E RLETGRTHQ
Sbjct: 226 AGRS--DARHAVTHYQVKKRYGSDGRGGAFAALLECRLETGRTHQ 268
>gi|315917437|ref|ZP_07913677.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
gonidiaformans ATCC 25563]
gi|313691312|gb|EFS28147.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
gonidiaformans ATCC 25563]
Length = 318
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 129/216 (59%), Gaps = 32/216 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+KG +++ I E + + AE+IPLDIVYED +LVVNK A+MVVHPA GN +GTLVN
Sbjct: 59 KLKGKEVIQLAIPEEEKMEIVAENIPLDIVYEDKYLLVVNKQANMVVHPALGNYSGTLVN 118
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L++C E++SD ++G IRPGIVHRLDK T+GL++VAK
Sbjct: 119 ALLYYCK---------------ENLSD-------MNGV-IRPGIVHRLDKDTTGLIIVAK 155
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQ--SSGRIEVPISRDPNNRIRMAAIPGSNK 205
+ H+ L+ F+ TI + Y+++ G S+ GR+E I+RD +R +M
Sbjct: 156 NNQVHSKLALMFQEKTIRKTYVAIVKGRFSEEKKEGRLETLITRDSKDRKKMTV-----S 210
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
Q + A S Y+V +L G +LVE ++ETGRTHQ
Sbjct: 211 QIQGKKAISNYRV--LLDGDKHSLVEVKIETGRTHQ 244
>gi|418029431|ref|ZP_12667971.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|354689937|gb|EHE89903.1| tRNA pseudouridine(38-40) synthase [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 304
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K VS+ V+ D++ + L+PL+ EAE+IPLDIVYED +V+VVNKP MVVH
Sbjct: 41 ILVNGKKSKVSYKVQKDDLIQVIVLPLEPLKLEAENIPLDIVYEDKDVIVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ + TLVN +L+H D++D E RPGIVHR+
Sbjct: 101 PAAGHPSHTLVNALLYHT----------------RDLADSPE--------GFRPGIVHRI 136
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK+ + L +Q + +R Y+++ G ++ G I+ PI R+P +R
Sbjct: 137 DKDTSGLLMVAKNAAARESLEKQLAAKSNKRQYLAIVHGNFAEEEGTIDAPIGRNPEDRK 196
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA + + + A + +KV+E G +LVE +LETGRTHQ
Sbjct: 197 QMAVVE------KGKSAVTHFKVLEQYQ--GYSLVECQLETGRTHQ 234
>gi|334344653|ref|YP_004553205.1| RluA family pseudouridine synthase [Sphingobium chlorophenolicum
L-1]
gi|334101275|gb|AEG48699.1| pseudouridine synthase, RluA family [Sphingobium chlorophenolicum
L-1]
Length = 316
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/200 (44%), Positives = 124/200 (62%), Gaps = 31/200 (15%)
Query: 44 PLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASS 101
P+ AEA ++IPL IV+ED +++V++KPA +VVHPA GN GTLVN +LHHC
Sbjct: 72 PVEAEAVAQNIPLAIVHEDADLIVIDKPAGLVVHPAAGNLDGTLVNALLHHC-------- 123
Query: 102 NQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKL 161
+ S I G + RPGIVHR+DK TSGLLVVAK + +H L++QF
Sbjct: 124 --------------QGQLSGIGGVA-RPGIVHRIDKDTSGLLVVAKSDRAHEGLAQQFAA 168
Query: 162 HTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEI 221
H+I+R+Y ++ G P ++G ++ I R +R +MA + G+ +HA + Y+ +E
Sbjct: 169 HSIDRLYAAIVYGAPQPAAGTVDSWIGRSDADRKKMAVC----REGRGKHAVTHYRTLEK 224
Query: 222 LAGGGSALVEWRLETGRTHQ 241
L G+ALVE RLETGRTHQ
Sbjct: 225 LR--GAALVECRLETGRTHQ 242
>gi|220909998|ref|YP_002485309.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 7425]
gi|219866609|gb|ACL46948.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 7425]
Length = 313
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 126/216 (58%), Gaps = 36/216 (16%)
Query: 29 VKGGDMVNCTISELQPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
V+ GD + + P+ AE E IPLDI+YEDD +L+VNKPA +VVHPAPG++ GTLV
Sbjct: 51 VQVGDRIQLELPP--PVAAEPLPEHIPLDILYEDDQLLIVNKPAGLVVHPAPGHSGGTLV 108
Query: 87 NGILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
N +L HC LP + G RPGIVHRLDK TSG + +
Sbjct: 109 NALLAHCGDLPGI-------------------------GGVQRPGIVHRLDKDTSGAIAI 143
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E +H HL Q K T R Y+ + GVP SSGRI++PI R P +R +MA + S+K
Sbjct: 144 AKTELAHRHLQAQIKAKTARREYLGVVYGVPKTSSGRIDLPIGRHPVDRKKMAVV-ASDK 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L G L++++LETGRTHQ
Sbjct: 203 ---GRSAVTHWQIQERL--GNFTLLQFQLETGRTHQ 233
>gi|350272994|ref|YP_004884302.1| pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
gi|348597836|dbj|BAL01797.1| pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
Length = 307
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 121/218 (55%), Gaps = 35/218 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S + GG+ V + QP EDIPLD+VYED +V+VVNKP +VVHPAPG+ GTL
Sbjct: 51 SLRLTGGETVTVELPNPQPTEVRPEDIPLDVVYEDGDVIVVNKPKGLVVHPAPGHPDGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLL 143
VN +LHHC SS+S G +RPGIVHR+D+ TSGL+
Sbjct: 111 VNALLHHC-------------------------GSSLSGIGGVLRPGIVHRIDRDTSGLI 145
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+ AK++ +H L+ Q + HT+ R Y + G + SG ++ PI R P +R + A +PG
Sbjct: 146 IAAKNDFAHQKLAAQLQDHTLARTYECIVLGNLKEESGSVDAPIGRCPGDRKKQAVVPG- 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+ + G V RLETGRTHQ
Sbjct: 205 -----GRRAVTHWEVVARYS--GYTHVRCRLETGRTHQ 235
>gi|325295189|ref|YP_004281703.1| RluA family pseudouridine synthase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065637|gb|ADY73644.1| pseudouridine synthase, RluA family [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 313
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK G+ V+ I E PL + E+IPLDIVYED +V+V+NKPA +VVHPAPG+ +GTL
Sbjct: 50 SYKVKEGETVSFEIPEPIPLDLQPENIPLDIVYEDKDVIVINKPAGLVVHPAPGHYSGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L++C D + I+ ++RPGIVHRLDK T+GLLVV
Sbjct: 110 VNALLYYC-------------KDFQGIN-----------GTLRPGIVHRLDKDTAGLLVV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ + L EQFK T+ R Y +L G+ + RI VPI RD +R + + S K
Sbjct: 146 AKNDLAQQSLIEQFKRRTVGRFYRALVLGIFEKQHDRIVVPIGRDKFDRKKFSPNTTSPK 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y V+E + ++ +LETGRTHQ
Sbjct: 206 -----EAITNYWVLESFPTHNVSDIKCKLETGRTHQ 236
>gi|421873629|ref|ZP_16305241.1| pseudouridine synthase, RluA family protein [Brevibacillus
laterosporus GI-9]
gi|372457416|emb|CCF14790.1| pseudouridine synthase, RluA family protein [Brevibacillus
laterosporus GI-9]
Length = 298
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 131/216 (60%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V D ++ + + L+ EA+ + LDIVYED +V+VVNKP +VVHPA G+ TGTL
Sbjct: 45 NYKVAMDDEISLRVPPPKELKIEAQAMDLDIVYEDSDVVVVNKPRGLVVHPALGHYTGTL 104
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+++HC +D+S I+G +RPGIVHR+DK TSGLL++
Sbjct: 105 VNGLMYHC----------------KDLS-------GINGV-MRPGIVHRIDKDTSGLLMI 140
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +HA L+ Q K HT+ R Y++L G G I+ PI RDP NR +MA + G++K
Sbjct: 141 AKNDKAHASLAAQLKEHTVNRKYVALVHGEIPHEMGTIDAPIGRDPKNRQQMAVVFGNSK 200
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E + LVE +LETGRTHQ
Sbjct: 201 -----PAVTHFVVLERMK--DFTLVELKLETGRTHQ 229
>gi|420155633|ref|ZP_14662491.1| pseudouridine synthase, RluA family [Clostridium sp. MSTE9]
gi|394758862|gb|EJF41698.1| pseudouridine synthase, RluA family [Clostridium sp. MSTE9]
Length = 308
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 128/228 (56%), Gaps = 31/228 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPL-RAEAEDIPLDIVYEDDNVLVVNKPAHMV 73
A+ LS + V G + + + P+ +A+ E+IPLDIVYEDD++LVVNKP MV
Sbjct: 41 AVLCGGRPLSKNDRVAEGQTIEVLLPDPAPMEQAKPENIPLDIVYEDDDLLVVNKPKGMV 100
Query: 74 VHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 133
VHPAPGN TLVN +L+HC + S I+G IRPGIVH
Sbjct: 101 VHPAPGNRDKTLVNALLYHCG----------------------DSLSGINGV-IRPGIVH 137
Query: 134 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN 193
R+DK TSGLL+VAK++ +H L+ Q K H+ R Y ++ G + SG ++ PI R P +
Sbjct: 138 RIDKDTSGLLIVAKNDFAHQSLAAQIKEHSFTREYEAVVYGHLREQSGTVDAPIGRHPTD 197
Query: 194 RIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R +M +R A + Y+V+E L G + V RLETGRTHQ
Sbjct: 198 RKKMTVT-----QKNSRRAVTHYQVLEELP--GFSYVRLRLETGRTHQ 238
>gi|73749059|ref|YP_308298.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. CBDB1]
gi|73660775|emb|CAI83382.1| ribosomal large subunit pseudouridine synthase,RluD subfamily
[Dehalococcoides sp. CBDB1]
Length = 300
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD + I P +AEDIPL+I+++D ++L++NKP + VHPAPG+ TL
Sbjct: 50 SLRLKTGDTITIEIPPETPSELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L + ED D +RPGIVHRLDK TSGLL+V
Sbjct: 110 VNGVL-------------ALEPEMEDFDD-----------PLRPGIVHRLDKDTSGLLLV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ + A+LS QFK TI + Y++L G + G IE P+ RDP NR ++A +
Sbjct: 146 AKNRQALANLSAQFKERTIRKYYLALVKGELRPAEGFIEAPLGRDPQNRQKIAVV----- 200
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + YKV+ + G +L+E +LETGRTHQ
Sbjct: 201 -SDGRHARTGYKVLRYIQ--GYSLLEVKLETGRTHQ 233
>gi|339624005|ref|ZP_08659794.1| pseudouridylate synthase, 23S RNA-specific [Fructobacillus
fructosus KCTC 3544]
Length = 306
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK GD V T+ + + + + E+IPLDIVYEDD++LVVNK MVVHPA G+A GTL
Sbjct: 51 SYKVKSGDKVRITVPDTKSVAIQPENIPLDIVYEDDDLLVVNKKQGMVVHPAAGHAGGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L H L SSI+G RPGIVHR+D+ TSGLL+V
Sbjct: 111 VNALLFHAPL------------------------SSING-EFRPGIVHRIDRDTSGLLMV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ + K H ER Y +L G + G ++ P+ R P +R + A + G
Sbjct: 146 AKNDRAHQALAAELKAHKTERYYYALVKGEFKEDHGTVDAPVGRHPKDRKKQAVVAG--- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+E G L+ LETGRTHQ
Sbjct: 203 ---GREAVTHFEVLERFH--GYTLLRLALETGRTHQ 233
>gi|260434078|ref|ZP_05788049.1| ribosomal large subunit pseudouridine synthase D [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417906|gb|EEX11165.1| ribosomal large subunit pseudouridine synthase D [Silicibacter
lacuscaerulensis ITI-1157]
Length = 347
Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 129/226 (57%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V G V T+SE EDIPLDIV+ED +++V+NKPA +VVHPAPG+ +GTLVN
Sbjct: 59 KVAEGAAVCITVSEADESHIGPEDIPLDIVHEDADLIVINKPAGLVVHPAPGSPSGTLVN 118
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC +D+S G RPGIVHR+DK TSGLLVVAK
Sbjct: 119 ALLHHCG---------------DDLSG--------VGGVKRPGIVHRIDKDTSGLLVVAK 155
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMAAIPGSNK 205
+ +H L+ QF+ H++ER Y +L GVP + R+ +S +P N +R+ +K
Sbjct: 156 SDAAHQGLAAQFEAHSVERYYRALCYGVPDANDPRLRGIKGVSFEPGNVMRITTQLARHK 215
Query: 206 HGQ---------ARHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
H + RHA +R +V+E+ G+ +L+E LETGRTHQ
Sbjct: 216 HDRQKQAVLFHGGRHAVTRARVVEVFGQPGAVSLIECWLETGRTHQ 261
>gi|398818376|ref|ZP_10576968.1| pseudouridine synthase, RluA family [Brevibacillus sp. BC25]
gi|398028144|gb|EJL21668.1| pseudouridine synthase, RluA family [Brevibacillus sp. BC25]
Length = 309
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ D V + + + + E++ LDIVYED +V+VVNKP +VVHPAPG+ +GTL
Sbjct: 58 NYKLQAEDEVTLRVPPPKEMAIQPEEMSLDIVYEDSDVVVVNKPRGLVVHPAPGHYSGTL 117
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L HC +D+S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 118 VNGLLAHC----------------KDLS-------GINGV-LRPGIVHRIDKDTSGLLMV 153
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ K HT+ R Y+++ GV G IE PI RDP NR +MA +
Sbjct: 154 AKNDKAHMGLAEQLKAHTVNRKYVAIVHGVIPHEMGTIEAPIGRDPKNRQQMAVV----- 208
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ A + + V+E LVE +LETGRTHQ
Sbjct: 209 FENSKPAVTHFIVLERFK--EYTLVELKLETGRTHQ 242
>gi|149202314|ref|ZP_01879287.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
gi|149144412|gb|EDM32443.1| Pseudouridine synthase, RluD [Roseovarius sp. TM1035]
Length = 342
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 131/226 (57%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD++ + E + E I L++VYEDD+++VVNKPA MVVHPAPG+ GTLVN
Sbjct: 59 RVQAGDLIEIVVPEARESHMAPEAIALEVVYEDDDLIVVNKPAGMVVHPAPGSPEGTLVN 118
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC + S + GA RPGIVHR+DK TSGLLVVAK
Sbjct: 119 ALLHHCG----------------------DSLSGVGGAK-RPGIVHRIDKETSGLLVVAK 155
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPG 202
+ +H L+ QF+ H++ER Y ++ GVP S R+ IS +P N +R+A A
Sbjct: 156 SDAAHQGLAAQFEAHSVERQYRAVVYGVPEASDPRLRGLRGISFEPGNILRIATRLARHK 215
Query: 203 SNKHGQA------RHAASRYKVIEILAGGG-SALVEWRLETGRTHQ 241
+++ QA RHA +R +VIE G +AL+E LETGRTHQ
Sbjct: 216 TDRQRQAVLFEGGRHAVTRARVIESFGTPGVAALMECWLETGRTHQ 261
>gi|373498068|ref|ZP_09588583.1| RluA family pseudouridine synthase [Fusobacterium sp. 12_1B]
gi|371962108|gb|EHO79717.1| RluA family pseudouridine synthase [Fusobacterium sp. 12_1B]
Length = 313
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 134/221 (60%), Gaps = 32/221 (14%)
Query: 22 KLSVSHN-VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
K++ S N +KG + + I E + L E+IPL+I+YED +++V+NK MVVHPA GN
Sbjct: 52 KVTKSGNKLKGTETITVNIPEDEILDVIPENIPLNIIYEDKDIVVINKAPDMVVHPAHGN 111
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +L+H +D+S +I+G IRPGIVHRLDK TS
Sbjct: 112 YNGTLVNALLYHI----------------KDLS-------TINGV-IRPGIVHRLDKDTS 147
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
G++VVAK++ +H+ LS+ FK T+E+ YI + G+ SGRIE I RD +R +MA +
Sbjct: 148 GVIVVAKNDEAHSTLSDMFKEKTLEKTYICIAKGIFKDKSGRIETLIGRDSRDRKKMAVV 207
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ K +A S Y++++ G +LV+ R+ETGRTHQ
Sbjct: 208 DINGK-----NAISNYEILD--EGKNFSLVKVRIETGRTHQ 241
>gi|289449856|ref|YP_003475266.1| putative ribosomal large subunit pseudouridine synthase D
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184403|gb|ADC90828.1| putative ribosomal large subunit pseudouridine synthase D
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 319
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 122/207 (58%), Gaps = 30/207 (14%)
Query: 35 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 94
V +SE+ R EAED+PLDIV+ED+ +LVVNKP +VVHPAPG+A GTLVN +L++C
Sbjct: 63 VKIELSEVAVPRHEAEDLPLDIVFEDEYLLVVNKPRGLVVHPAPGHANGTLVNALLNYCG 122
Query: 95 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAH 154
L+ N E RPGIVHR+DK TSGLLVVAKD H
Sbjct: 123 GNNLSDINGE----------------------FRPGIVHRIDKDTSGLLVVAKDNSIHNK 160
Query: 155 LSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAAS 214
L+E +H I RVY ++ G ++++G+I+ PI RDP NR +MA + + A +
Sbjct: 161 LAELLSVHAINRVYQAIVFGNFAETAGKIDAPIGRDPRNRQKMAVT------LKGKPALT 214
Query: 215 RYKVIEILAGGGSALVEWRLETGRTHQ 241
+ V+ + G +L+ LETGRTHQ
Sbjct: 215 HFTVLA--SRPGYSLLRLNLETGRTHQ 239
>gi|210622438|ref|ZP_03293170.1| hypothetical protein CLOHIR_01118 [Clostridium hiranonis DSM 13275]
gi|210154254|gb|EEA85260.1| hypothetical protein CLOHIR_01118 [Clostridium hiranonis DSM 13275]
Length = 309
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 124/213 (58%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK D + I + + L +DIP++IVYEDD++++VNKP MVVHPAPGN GTLVN
Sbjct: 61 VKEEDKIVIEIPKPKVLEVVPQDIPIEIVYEDDDIIIVNKPQGMVVHPAPGNYEGTLVNA 120
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
IL+HC SSI+G IRPGIVHR+DK TSG+L++AK+
Sbjct: 121 ILYHCKGNL----------------------SSINGV-IRPGIVHRIDKDTSGILMIAKN 157
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
++H L+EQ K H+I R Y + V + + ++ PI R+P +R++MA +P
Sbjct: 158 NNAHNCLAEQLKDHSITREYEFICHSVFKEDNVTVDRPIGRNPKDRLKMAIVPN------ 211
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++VIE G V RLETGRTHQ
Sbjct: 212 GKRAVTHFEVIERF--NGYTHVRARLETGRTHQ 242
>gi|383648684|ref|ZP_09959090.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
elodea ATCC 31461]
Length = 318
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 125/211 (59%), Gaps = 29/211 (13%)
Query: 31 GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGIL 90
GG + + + +P EA+DIPL++V+ED++++V++KPA +VVHPA GN GTLVN +L
Sbjct: 63 GGAIFQVVVPDPKPAHNEAQDIPLNVVFEDEHLIVLDKPAGLVVHPAAGNFDGTLVNALL 122
Query: 91 HHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEH 150
HHC+ S I G + RPGIVHR+DK TSGL+V AK +
Sbjct: 123 HHCAGQL----------------------SGIGGVA-RPGIVHRIDKDTSGLMVAAKTDP 159
Query: 151 SHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQAR 210
+H L+ QFK H+I+R Y ++TSG + G + P++R P+NR ++A G +
Sbjct: 160 AHVGLAHQFKAHSIDRRYRAITSGAVRLTQGTVNAPLARSPSNRKKIAVC----AEGHGK 215
Query: 211 HAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HA + ++ I L + VE RLETGRTHQ
Sbjct: 216 HAITHWRKIRELR--DATYVECRLETGRTHQ 244
>gi|408370334|ref|ZP_11168111.1| RluA family pseudouridine synthase [Galbibacter sp. ck-I2-15]
gi|407744092|gb|EKF55662.1| RluA family pseudouridine synthase [Galbibacter sp. ck-I2-15]
Length = 343
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 123/223 (55%), Gaps = 43/223 (19%)
Query: 26 SHNVKGGDMVNCTISE------LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
+H VK D V L P EDIPLDIVYEDD +LVVNKPA MVVHP G
Sbjct: 67 NHKVKANDQVKVLFEHPPHEYLLTP-----EDIPLDIVYEDDELLVVNKPAGMVVHPGHG 121
Query: 80 NATGTLVNG-ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKG 138
N +GTL+N I H +LP +SN+ RPG+VHR+DK
Sbjct: 122 NYSGTLINALIFHFDNLPL--NSNE------------------------RPGLVHRIDKD 155
Query: 139 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 198
TSGLLVVAK E++ +HLS+QF T ER Y++L G + G +E I R P NR++MA
Sbjct: 156 TSGLLVVAKTENALSHLSKQFFHKTSEREYMALVWGDLKEDQGVVEGHIGRHPKNRLQMA 215
Query: 199 AIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
P + Q + A + YKV+E G LV RLETGRTHQ
Sbjct: 216 VFPDGD---QGKEAVTHYKVLERF--GYVTLVSCRLETGRTHQ 253
>gi|254510211|ref|ZP_05122278.1| ribosomal large subunit pseudouridine synthase D [Rhodobacteraceae
bacterium KLH11]
gi|221533922|gb|EEE36910.1| ribosomal large subunit pseudouridine synthase D [Rhodobacteraceae
bacterium KLH11]
Length = 344
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 35/219 (15%)
Query: 35 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 94
+ T++E + EDIPLD+VYEDD+++V+NKPA MVVHPAPG+ GTLVN +LHHC
Sbjct: 66 IAITVAEAEDSHIGPEDIPLDVVYEDDDLIVINKPAGMVVHPAPGSPNGTLVNALLHHCG 125
Query: 95 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAH 154
+D+S G RPGIVHR+DK TSGLLVVAK + +H
Sbjct: 126 ---------------DDLSG--------VGGVKRPGIVHRIDKETSGLLVVAKSDAAHHG 162
Query: 155 LSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPGSNKHGQA 209
L+ QF+ H++ER Y ++ GVP + R+ +S +P N +R+ A +++ QA
Sbjct: 163 LAAQFEAHSVERYYRAVCYGVPDANDPRLRGIKGVSFEPGNIMRLTTQLARHKTDRQKQA 222
Query: 210 ------RHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
RHA +R +++E+ G+ +LVE LETGRTHQ
Sbjct: 223 VLFHGGRHAVTRSRIVEVFGNPGAISLVECWLETGRTHQ 261
>gi|325285479|ref|YP_004261269.1| RluA family pseudouridine synthase [Cellulophaga lytica DSM 7489]
gi|324320933|gb|ADY28398.1| pseudouridine synthase, RluA family [Cellulophaga lytica DSM 7489]
Length = 344
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 125/222 (56%), Gaps = 40/222 (18%)
Query: 26 SHNVKGGDMVNCTISE------LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
++ VK GD + S LQP EDIPLDIVYEDD +LVVNKPA MVVHP G
Sbjct: 66 NYKVKAGDDIRVMFSHPPYEFLLQP-----EDIPLDIVYEDDVLLVVNKPAGMVVHPGHG 120
Query: 80 NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 139
N +GTL+N +LHHC + D+ ++ +S RPG+VHR+DK T
Sbjct: 121 NYSGTLINALLHHCKV---------------DLPNN---------SSDRPGLVHRIDKDT 156
Query: 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAA 199
SGLLVVAK E + LS+QF T ER Y+++ G G IE + R P NR++M
Sbjct: 157 SGLLVVAKTEAAMTFLSKQFFDKTSEREYVAIVWGNVEADEGTIEGHLGRHPKNRLQMHV 216
Query: 200 IPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
P + Q + A + YKV+E L G ++ +LETGRTHQ
Sbjct: 217 FPEGD---QGKEAITHYKVLERL--GYVTVISCKLETGRTHQ 253
>gi|372210267|ref|ZP_09498069.1| ribosomal large subunit pseudouridine synthase D [Flavobacteriaceae
bacterium S85]
Length = 337
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 124/221 (56%), Gaps = 33/221 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ +H VK GD+V + E P E E+IPLDIV+EDD V+VVNKPA MVVHP GN
Sbjct: 59 VKANHKVKAGDVVRV-VFEYAPRETEILPENIPLDIVHEDDAVIVVNKPAGMVVHPGHGN 117
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TGTLVN ++HH F + A RPG+VHR+DK TS
Sbjct: 118 YTGTLVNALMHH-------------------------FKNLPENADGRPGLVHRIDKDTS 152
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLLV+AK EH+ AHLS+QFK T ER+Y +L G + G IE I R NR+ M +
Sbjct: 153 GLLVIAKTEHALAHLSQQFKDKTSERLYYALVWGNIEEDEGTIEGHIGRHLKNRL-MQDV 211
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HG+ A + +KV+E LV+ LETGRTHQ
Sbjct: 212 FTDGEHGKP--AVTHFKVLERFT--YVTLVQCELETGRTHQ 248
>gi|414074219|ref|YP_006999436.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris UC509.9]
gi|413974139|gb|AFW91603.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris UC509.9]
Length = 301
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 132/226 (58%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + + VK GD + I + + L AED+PL+I+YED +V VVNKP MVVH
Sbjct: 39 VFVNNEAKKAKYKVKTGDRIEFEIPQAEVLDVAAEDLPLEIIYEDSDVAVVNKPQGMVVH 98
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+A+GTLVN I++H +D+ SSI+G IRPGIVHR+
Sbjct: 99 PAAGHASGTLVNAIMYHI----------------KDL-------SSINGV-IRPGIVHRI 134
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL++AK++ +H L++Q K T +R Y+++ G + G IE PI R+ +R
Sbjct: 135 DKDTSGLLMIAKNDKAHESLADQLKDKTSKRRYLAIVHGELANDKGTIEAPIGRNLKDRK 194
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + G + A + ++V+E G L+ RLETGRTHQ
Sbjct: 195 KQAVVSG------GKPAVTHFEVLERFV--GYTLIALRLETGRTHQ 232
>gi|229075650|ref|ZP_04208632.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock4-18]
gi|228707426|gb|EEL59617.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock4-18]
Length = 302
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI + + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKENDEITVTIPDPEELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 203 -DENG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|229104455|ref|ZP_04235123.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-28]
gi|229117388|ref|ZP_04246765.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock1-3]
gi|407706351|ref|YP_006829936.1| formamidase [Bacillus thuringiensis MC28]
gi|423378255|ref|ZP_17355539.1| RluA family pseudouridine synthase [Bacillus cereus BAG1O-2]
gi|423448398|ref|ZP_17425277.1| RluA family pseudouridine synthase [Bacillus cereus BAG5O-1]
gi|423547190|ref|ZP_17523548.1| RluA family pseudouridine synthase [Bacillus cereus HuB5-5]
gi|423615844|ref|ZP_17591678.1| RluA family pseudouridine synthase [Bacillus cereus VD115]
gi|423623028|ref|ZP_17598806.1| RluA family pseudouridine synthase [Bacillus cereus VD148]
gi|228666088|gb|EEL21553.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock1-3]
gi|228678977|gb|EEL33186.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-28]
gi|401128992|gb|EJQ36675.1| RluA family pseudouridine synthase [Bacillus cereus BAG5O-1]
gi|401178911|gb|EJQ86084.1| RluA family pseudouridine synthase [Bacillus cereus HuB5-5]
gi|401259801|gb|EJR65975.1| RluA family pseudouridine synthase [Bacillus cereus VD148]
gi|401260381|gb|EJR66554.1| RluA family pseudouridine synthase [Bacillus cereus VD115]
gi|401636521|gb|EJS54275.1| RluA family pseudouridine synthase [Bacillus cereus BAG1O-2]
gi|407384036|gb|AFU14537.1| putative RNA pseudouridine synthase ylyB [Bacillus thuringiensis
MC28]
Length = 302
Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI + + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKENDEITVTIPDPEELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 203 -DENG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|47570307|ref|ZP_00240954.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
G9241]
gi|47553016|gb|EAL11420.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
G9241]
Length = 302
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI + + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKENDEITVTIPDPEELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 203 -DENG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|410658099|ref|YP_006910470.1| Ribosomal large subunit pseudouridine synthase D [Dehalobacter sp.
DCA]
gi|410661089|ref|YP_006913460.1| Ribosomal large subunit pseudouridine synthase D [Dehalobacter sp.
CF]
gi|409020454|gb|AFV02485.1| Ribosomal large subunit pseudouridine synthase D [Dehalobacter sp.
DCA]
gi|409023445|gb|AFV05475.1| Ribosomal large subunit pseudouridine synthase D [Dehalobacter sp.
CF]
Length = 321
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + +I Q L E++PL+IVYEDD++LVVNKP MVVHPAPG +GTL
Sbjct: 68 NYRVQEEDRIEISIPPAQKLDVLPEELPLEIVYEDDDLLVVNKPQGMVVHPAPGAWSGTL 127
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC + S I+G IRPGI+HR+DK TSGLLVV
Sbjct: 128 VNALLYHC-----------------------QNLSGINGV-IRPGIIHRIDKDTSGLLVV 163
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK +++H HL+ Q K H++ R Y ++ G+ S+ SG ++ PI RDP +R +MA +
Sbjct: 164 AKTDNAHHHLAHQIKEHSVGRSYRAVIHGLMSEPSGTVDAPIGRDPKDRKKMAVV----- 218
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R+A + Y V+E ++ L+TGRTHQ
Sbjct: 219 FKNSRNAVTHYYVLERFMHFTE--IKAVLDTGRTHQ 252
>gi|452204042|ref|YP_007484175.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi DCMB5]
gi|452111101|gb|AGG06833.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi DCMB5]
Length = 300
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD + I P +AEDIPL+I+++D ++L++NKP + VHPAPG+ TL
Sbjct: 50 SLRLKTGDTITIEIPPETPSELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L + ED D +RPGIVHRLDK TSGLL+V
Sbjct: 110 VNGVL-------------ALEPEMEDFDD-----------PLRPGIVHRLDKDTSGLLLV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ + A+LS QFK T+ + Y++L G + G IE P+ RDP NR ++A +
Sbjct: 146 AKNRQALANLSAQFKERTVRKYYLALVKGELRPAEGFIEAPLGRDPQNRQKIAVV----- 200
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + YKV+ + G +L+E +LETGRTHQ
Sbjct: 201 -SDGRHARTGYKVLRYIQ--GYSLLEVKLETGRTHQ 233
>gi|158320450|ref|YP_001512957.1| RluA family pseudouridine synthase [Alkaliphilus oremlandii OhILAs]
gi|158140649|gb|ABW18961.1| pseudouridine synthase, RluA family [Alkaliphilus oremlandii
OhILAs]
Length = 308
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 125/213 (58%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K GD + + +++ + E E+IPL IVYED++V+VV+KP MVVHPAPGN +GTLVN
Sbjct: 55 IKLGDEIEINLPQVEEVTIEPENIPLTIVYEDEDVIVVDKPQGMVVHPAPGNYSGTLVNA 114
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC NQ S ++G +RPGIVHR+DK TSGLLVVAK+
Sbjct: 115 LLFHC-------KNQ---------------LSDVNG-PMRPGIVHRIDKDTSGLLVVAKN 151
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+H L+EQF+ HT R Y ++ G + ++ PI R P +R++ A +
Sbjct: 152 NAAHEILAEQFRAHTNTRKYHAIVVGNIREKEAAVDAPIGRHPVDRLKRAVM------ND 205
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HA + +KV+E+ +E +LETGRTHQ
Sbjct: 206 GKHAVTHFKVLEVFR--DFTYIEAKLETGRTHQ 236
>gi|167771408|ref|ZP_02443461.1| hypothetical protein ANACOL_02774 [Anaerotruncus colihominis DSM
17241]
gi|167666048|gb|EDS10178.1| pseudouridine synthase, RluA family [Anaerotruncus colihominis DSM
17241]
Length = 306
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+S + ++GG+ + + QPL +DIP++IVYED ++LVVNKP MVVHPAPG+
Sbjct: 50 VSKNDRLRGGETFIIDVPDAQPLDIVPQDIPIEIVYEDGDLLVVNKPKGMVVHPAPGHPN 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC + SSI+G IRPGIVHR+DK TSGL
Sbjct: 110 GTLVNALLYHC----------------------QGRLSSINGV-IRPGIVHRIDKDTSGL 146
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L+EQ K H+ R+Y ++ G S G ++ PI R N+R +M
Sbjct: 147 LIVAKNDAAHGTLAEQIKNHSFTRIYNAVVYGGFSTDEGTVDAPIGRSQNDRKKMCVTDR 206
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ AR A + Y+V+E L G ++ LETGRTHQ
Sbjct: 207 N-----ARGAVTHYRVLERL--GRFTWLKLCLETGRTHQ 238
>gi|333394895|ref|ZP_08476714.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
Length = 304
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 124/216 (57%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ V GD + +I L + ++IPLDIVYEDD+VLVVNKP MVVHPAPG+ TL
Sbjct: 52 KYAVAAGDQITVSIPAPAALDVQPQNIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPQDTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H L S+I+G IRPGIVHR+DK TSGLL+V
Sbjct: 112 VNALLYHSPL------------------------STINGV-IRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q + T +R Y++L GV + G I+ PI+R N+R + A + G
Sbjct: 147 AKNDQAHISLAAQLQAKTSQREYLALVHGVIKEDKGTIDAPIARAKNDRKKQAVVAG--- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HA + ++V+E L++ LETGRTHQ
Sbjct: 204 ---GKHAVTHFEVLERF--NEYTLIKCILETGRTHQ 234
>gi|336392300|ref|ZP_08573699.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
gi|420146122|ref|ZP_14653559.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402202|gb|EJN55574.1| Pseudouridine synthase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 304
Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 124/216 (57%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ V GD + +I L + ++IPLDIVYEDD+VLVVNKP MVVHPAPG+ TL
Sbjct: 52 KYAVAAGDQITVSIPAPAALDVQPQNIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPQDTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H L S+I+G IRPGIVHR+DK TSGLL+V
Sbjct: 112 VNALLYHSPL------------------------STINGV-IRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q + T +R Y++L GV + G I+ PI+R N+R + A + G
Sbjct: 147 AKNDQAHISLAAQLQAKTSQREYLALVHGVIKEDKGTIDAPIARAKNDRKKQAVVAG--- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HA + ++V+E L++ LETGRTHQ
Sbjct: 204 ---GKHAVTHFEVLERF--NEYTLIKCILETGRTHQ 234
>gi|407778588|ref|ZP_11125851.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
pacificus pht-3B]
gi|407299665|gb|EKF18794.1| ribosomal large subunit pseudouridine synthase D [Nitratireductor
pacificus pht-3B]
Length = 338
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 123/225 (54%), Gaps = 34/225 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
H V G+ + E +P E++PL+I+ EDD ++VVNKPA +VVHPAPGN +GTL
Sbjct: 58 KHRVAAGEQYALVVPEAEPAEPLPENLPLEILCEDDALIVVNKPAGLVVHPAPGNWSGTL 117
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC TLA G RPGIVHRLD+ TSG++V
Sbjct: 118 VNALLYHCG-DTLAG----------------------IGGVRRPGIVHRLDRDTSGVMVA 154
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK + +H LSE F H +ER Y +L P + +G ++ P+ RDP +R A +P
Sbjct: 155 AKTDQAHRALSEAFADHGRSGDLERAYSALVWDAPDRWAGTVDAPLGRDPRSRTLRAVVP 214
Query: 202 GSNKHGQARHAASRYKVIEILAGGG-----SALVEWRLETGRTHQ 241
ARHA + Y+V + G +AL+E RLETGRTHQ
Sbjct: 215 --EGRADARHAVTHYQVQKRYGSDGKGGALAALIECRLETGRTHQ 257
>gi|222529363|ref|YP_002573245.1| RluA family pseudouridine synthase [Caldicellulosiruptor bescii DSM
6725]
gi|222456210|gb|ACM60472.1| pseudouridine synthase, RluA family [Caldicellulosiruptor bescii
DSM 6725]
Length = 300
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 124/219 (56%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ VK GD++ I E + L A+DI +++VYED+++ V+NKP MVVHP GN
Sbjct: 42 LKPAYKVKSGDIIKVVIPEPKQLSLVAQDIDIEVVYEDEHLSVINKPRGMVVHPGAGNFE 101
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +LH SSI+G IRPGIVHRLDK TSGL
Sbjct: 102 NTLVNALLHKFKGRL----------------------SSINGV-IRPGIVHRLDKDTSGL 138
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK + +H LSE K H I+R+Y ++ GV + SG ++ PI R P NR++MA +P
Sbjct: 139 LVVAKTDEAHIKLSEALKSHQIKRIYYAICEGVLKEDSGVVDAPIGRHPVNRLKMAIVP- 197
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E V+ RL+TGRTHQ
Sbjct: 198 -----NGKEAVTYFEVLERF--DKYTFVKLRLKTGRTHQ 229
>gi|289435186|ref|YP_003465058.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419459|ref|ZP_16496414.1| ribosomal large subunit pseudouridine synthase D [Listeria
seeligeri FSL N1-067]
gi|422422550|ref|ZP_16499503.1| ribosomal large subunit pseudouridine synthase D [Listeria
seeligeri FSL S4-171]
gi|289171430|emb|CBH27974.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632720|gb|EFR99690.1| ribosomal large subunit pseudouridine synthase D [Listeria
seeligeri FSL N1-067]
gi|313637301|gb|EFS02795.1| ribosomal large subunit pseudouridine synthase D [Listeria
seeligeri FSL S4-171]
Length = 303
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD + + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIYLEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVR---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++VIE L G L+ +L+TGRTHQ
Sbjct: 203 --DGKEARTHFEVIERLP--GYTLINCKLDTGRTHQ 234
>gi|365135096|ref|ZP_09343621.1| RluA family pseudouridine synthase [Subdoligranulum sp.
4_3_54A2FAA]
gi|363613066|gb|EHL64590.1| RluA family pseudouridine synthase [Subdoligranulum sp.
4_3_54A2FAA]
Length = 306
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 118/211 (55%), Gaps = 32/211 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + ++ + QP+ +DIPLDIVYED ++LVVNKP MVVHPA GN GTLVN +L+
Sbjct: 58 GDALCVSLPDAQPVEIIPQDIPLDIVYEDSSLLVVNKPKGMVVHPAAGNPDGTLVNALLY 117
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC+ L+ N E +RPGIVHR+DK TSGLLVVAKD +
Sbjct: 118 HCA-GRLSGINGE----------------------VRPGIVHRIDKDTSGLLVVAKDNET 154
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG-QAR 210
H LS+QF +H+I RVY ++ G + G +E I R P +R RMA +P K A
Sbjct: 155 HLSLSQQFAVHSIARVYHTVVYGGFAADDGFVEGNIGRHPVDRKRMAVVPKGGKAAYTAY 214
Query: 211 HAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H R+ L+ RL TGRTHQ
Sbjct: 215 HVEERFPAFTHLS--------VRLRTGRTHQ 237
>gi|341616031|ref|ZP_08702900.1| pseudouridine synthase D large subunit [Citromicrobium sp. JLT1363]
Length = 412
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 120/198 (60%), Gaps = 27/198 (13%)
Query: 44 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 103
PL AE +DIPL + YED++++VV+KPA MVVHPA GN GTLVN +LHHC+
Sbjct: 168 PLEAEPQDIPLVVAYEDEHLIVVDKPAGMVVHPAAGNRDGTLVNALLHHCAGQL------ 221
Query: 104 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHT 163
S I+G RPGIVHR+DK TSGLLVVAK + +H L++QF H+
Sbjct: 222 ----------------SGINGVE-RPGIVHRIDKDTSGLLVVAKTDSAHEGLAKQFADHS 264
Query: 164 IERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILA 223
I R YI++ +G P + G I+ + R +R +MA +P G +HA + Y+ +
Sbjct: 265 ISRRYIAICAGQPKPAQGTIDARLGRSDRDRKKMAVLPPDATRG--KHAITHYRTTDSF- 321
Query: 224 GGGSALVEWRLETGRTHQ 241
G ++++E RLETGRTHQ
Sbjct: 322 -GVASILECRLETGRTHQ 338
>gi|255022986|ref|ZP_05294972.1| hypothetical protein LmonocyFSL_05005 [Listeria monocytogenes FSL
J1-208]
gi|422809924|ref|ZP_16858335.1| Ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL J1-208]
gi|378751588|gb|EHY62176.1| Ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL J1-208]
Length = 302
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 128/216 (59%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVV----- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L++ +L+TGRTHQ
Sbjct: 202 -RDGKEARTHFEVLERLP--GYTLIKCKLDTGRTHQ 234
>gi|116873278|ref|YP_850059.1| ribosomal large subunit pseudouridine synthase [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116742156|emb|CAK21280.1| Ribosomal large subunit pseudouridine synthase [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 302
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ I E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHYEIREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVR---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L+ +L+TGRTHQ
Sbjct: 203 --DGKEARTHFEVLERLP--GYTLINCKLDTGRTHQ 234
>gi|312793558|ref|YP_004026481.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180698|gb|ADQ40868.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 300
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 123/219 (56%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ VK GD++ I E + L A+DI +++VYED+++ V+NKP MVVHP GN
Sbjct: 42 LKPAYKVKSGDIIKVVIPEPKQLSLVAQDIDIEVVYEDEHLAVINKPRGMVVHPGAGNFE 101
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +LH SSI+G IRPGIVHRLDK TSGL
Sbjct: 102 NTLVNALLHKFRGRL----------------------SSINGV-IRPGIVHRLDKDTSGL 138
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK + +H LSE K H I+R+Y ++ GV + SG I PI R P NR++MA +P
Sbjct: 139 LIVAKTDEAHIKLSEALKSHQIKRIYYAICEGVLKEDSGVINAPIGRHPVNRLKMAVVP- 197
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E ++ RL+TGRTHQ
Sbjct: 198 -----NGKEAVTYFEVLERF--DKYTFIKLRLKTGRTHQ 229
>gi|428301463|ref|YP_007139769.1| ribosomal large subunit pseudouridine synthase D [Calothrix sp. PCC
6303]
gi|428238007|gb|AFZ03797.1| ribosomal large subunit pseudouridine synthase D [Calothrix sp. PCC
6303]
Length = 307
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 120/215 (55%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
VK GD + I E+QPL + + IPLDI+YEDD +L+VNK A +VVHPAPG+ GTLVN
Sbjct: 53 TVKLGDRITLKIPEIQPLNLQPQAIPLDILYEDDQILIVNKSAGLVVHPAPGHPDGTLVN 112
Query: 88 GILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+L HC +LP + G RPGIVHRLDK T+G + +A
Sbjct: 113 ALLAHCPNLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIA 147
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K E +H +L Q K T R Y+ + G P G + +PI R P +R +MA +P +
Sbjct: 148 KTEQAHQNLQAQLKAKTACREYLGVVYGAPKTEKGSVNLPIGRHPIDRKKMAVVPVESG- 206
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E +A L+ ++LETGRTHQ
Sbjct: 207 --GREAVTHWQIRERIA--NFTLMHFQLETGRTHQ 237
>gi|323691964|ref|ZP_08106213.1| pseudouridine synthase [Clostridium symbiosum WAL-14673]
gi|355628019|ref|ZP_09049548.1| hypothetical protein HMPREF1020_03627 [Clostridium sp. 7_3_54FAA]
gi|323503973|gb|EGB19786.1| pseudouridine synthase [Clostridium symbiosum WAL-14673]
gi|354819987|gb|EHF04418.1| hypothetical protein HMPREF1020_03627 [Clostridium sp. 7_3_54FAA]
Length = 305
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 126/216 (58%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ GD V + E A+++PLDI+YED++V+++NKP MVVHPA G+ GTL
Sbjct: 51 SYKTAAGDTVTFEVPEAVEAEITAQEMPLDILYEDEDVILINKPKGMVVHPAAGHYEGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC E S I+G +RPGIVHR+D T+G+L+V
Sbjct: 111 VNGLMHHC----------------------REQLSGINGV-MRPGIVHRIDMDTTGVLIV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
K++ +H ++EQ K+H+I R Y ++ G G I PI R PN+R +M+ ++K
Sbjct: 148 CKNDLAHNSIAEQLKVHSITRKYYAVVFGSLKDDEGTIHAPIGRHPNDRKKMSI---NSK 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G + A + YKV+E G LVE RLETGRTHQ
Sbjct: 205 NG--KDAVTHYKVLERFH--GYTLVECRLETGRTHQ 236
>gi|323486916|ref|ZP_08092232.1| pseudouridine synthase [Clostridium symbiosum WAL-14163]
gi|323399779|gb|EGA92161.1| pseudouridine synthase [Clostridium symbiosum WAL-14163]
Length = 305
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 126/216 (58%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ GD V + E A+++PLDI+YED++V+++NKP MVVHPA G+ GTL
Sbjct: 51 SYKTAAGDTVTFEVPEAVEAEITAQEMPLDILYEDEDVILINKPKGMVVHPAAGHYEGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC E S I+G +RPGIVHR+D T+G+L+V
Sbjct: 111 VNGLMHHC----------------------REQLSGINGV-MRPGIVHRIDMDTTGVLIV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
K++ +H ++EQ K+H+I R Y ++ G G I PI R PN+R +M+ ++K
Sbjct: 148 CKNDLAHNSIAEQLKVHSITRKYYAVVFGSLKDDEGTIHAPIGRHPNDRKKMSI---NSK 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G + A + YKV+E G LVE RLETGRTHQ
Sbjct: 205 NG--KDAVTHYKVLERFH--GYTLVECRLETGRTHQ 236
>gi|317058953|ref|ZP_07923438.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_5R]
gi|313684629|gb|EFS21464.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_5R]
Length = 318
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+KG +++ I E + + AE+IPLDIVYED +LVVNK A+MVVHPA GN +GTLVN
Sbjct: 59 KLKGKEVIQLAIPEEEEMEIVAENIPLDIVYEDKYLLVVNKQANMVVHPALGNYSGTLVN 118
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L++C E++SD IRPGIVHRLDK T+GL++VAK
Sbjct: 119 ALLYYCK---------------ENLSD--------MNGVIRPGIVHRLDKDTTGLIIVAK 155
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQ--SSGRIEVPISRDPNNRIRMAAIPGSNK 205
+ H+ L+ F+ TI + Y+++ G S+ GR+E I+RDP +R +M
Sbjct: 156 NNQVHSKLALMFQEKTIRKTYVAIVKGRFSEERKEGRLETLITRDPKDRKKMTV-----S 210
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
Q + A S Y+V +L G +LVE ++ETGRTHQ
Sbjct: 211 QIQGKKAISNYRV--LLDGDKHSLVEVKIETGRTHQ 244
>gi|317131689|ref|YP_004091003.1| RluA family pseudouridine synthase [Ethanoligenens harbinense
YUAN-3]
gi|315469668|gb|ADU26272.1| pseudouridine synthase, RluA family [Ethanoligenens harbinense
YUAN-3]
Length = 302
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 118/214 (55%), Gaps = 30/214 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
++ GD + + PL A+A+DIP+++VYEDD++LVVNKP MVVHP GN GTLVN
Sbjct: 54 RMRAGDEIVVEFPDPVPLEAKAQDIPIEVVYEDDDLLVVNKPQGMVVHPGAGNPDGTLVN 113
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HC S S G +RPGIVHR+DK TSGLL+VAK
Sbjct: 114 ALLFHCG-----------------------DSLSGIGGVLRPGIVHRIDKDTSGLLMVAK 150
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
++ +H L+ Q K H+ R Y ++ GV + SG ++ P+ R P NR RMA
Sbjct: 151 NDRAHQSLAAQIKAHSFLREYEAVVCGVIKEDSGTVDAPVGRHPTNRKRMAVT-----QK 205
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+RHA + Y V+ + RLETGRTHQ
Sbjct: 206 NSRHAVTHYTVLRRYT--HYTHLRLRLETGRTHQ 237
>gi|144897894|emb|CAM74758.1| ribosomal large subunit pseudouridine synthase D [Magnetospirillum
gryphiswaldense MSR-1]
Length = 327
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 121/216 (56%), Gaps = 28/216 (12%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S VK G I +P + + L + YEDD+++V++KP +VVHPAPG+ TL
Sbjct: 59 SARVKPGQCFVVAIPPERPADPLPQAMDLSVAYEDDDLIVIDKPPGLVVHPAPGSPDHTL 118
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC E S I G RPGIVHR+DK TSGLLVV
Sbjct: 119 VNALLAHCG----------------------ESLSGIGGVK-RPGIVHRIDKDTSGLLVV 155
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQF +H++ER Y +L GVP + G I I R P +R +MA +
Sbjct: 156 AKNDRAHHGLAEQFSVHSLERAYRALVWGVPMPAQGEIHGNIGRSPQDRKKMAIV----S 211
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HG + A +RY+V+ AGG +LVE RL TGRTHQ
Sbjct: 212 HG-GKPALTRYRVLRSFAGGAVSLVECRLATGRTHQ 246
>gi|89055892|ref|YP_511343.1| ribosomal large subunit pseudouridine synthase D [Jannaschia sp.
CCS1]
gi|88865441|gb|ABD56318.1| ribosomal large subunit pseudouridine synthase D [Jannaschia sp.
CCS1]
Length = 310
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 125/231 (54%), Gaps = 49/231 (21%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD V T+ + + AEDIPLDIV+EDD+++VVNKPA MVVHPAPG+ +GTLVN
Sbjct: 34 RVAEGDGVEITVEDAAEVETVAEDIPLDIVHEDDDLIVVNKPAGMVVHPAPGSPSGTLVN 93
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVV 145
+LHH F +S G RPGIVHR+DK TSGLLVV
Sbjct: 94 ALLHH-------------------------FGGKLSGVGGEKRPGIVHRIDKDTSGLLVV 128
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGR---------------IEVPISRD 190
AK + +H L+ QF H++ER Y++L GVP S R I ++R
Sbjct: 129 AKSDRAHHGLAAQFADHSMEREYLALCHGVPDGSDPRLRGVKGVSFEGSTVKITTQLARH 188
Query: 191 PNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R R A + RHA +R +V+E A G ALV RLETGRTHQ
Sbjct: 189 KTDRQRQAVL-----FSGGRHAVTRVRVLE--AHGPVALVSCRLETGRTHQ 232
>gi|326692704|ref|ZP_08229709.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
argentinum KCTC 3773]
Length = 308
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 131/233 (56%), Gaps = 33/233 (14%)
Query: 9 NQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 68
N V + ++ ++ S+ V GD+++ +QP AE +PLDIVYED ++LVVNK
Sbjct: 34 NWVQSGEVLVNGQRVKRSYKVAAGDVISIQPPAVQPTEIVAEAMPLDIVYEDADLLVVNK 93
Query: 69 PAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 128
P MVVHPA G+ +GTLVNG+LHH L T+ + EF R
Sbjct: 94 PQGMVVHPAAGHTSGTLVNGLLHHAPLSTI----------------NGEF---------R 128
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 188
PGIVHR+D+ TSGLL+VAK++ +H LS Q K H +R+Y +L G +++G I PI+
Sbjct: 129 PGIVHRIDRDTSGLLMVAKNDQAHQALSAQLKAHKNDRIYYALVRGEFEENTGTINAPIA 188
Query: 189 RDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R +R + A G R A + ++VI G L++ RLETGRTHQ
Sbjct: 189 RHAIDRKKQAVQEG------GREAVTHFEVIARYV--GYTLLKVRLETGRTHQ 233
>gi|260063592|ref|YP_003196672.1| ribosomal large subunit pseudouridine synthase D [Robiginitalea
biformata HTCC2501]
gi|88783037|gb|EAR14210.1| ribosomal large subunit pseudouridine synthase D [Robiginitalea
biformata HTCC2501]
Length = 343
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 112/192 (58%), Gaps = 30/192 (15%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDA 109
EDIPLDIVYED+ +LVVNKPA MVVHP GN TGTLVN ++HH L S N
Sbjct: 92 EDIPLDIVYEDEVLLVVNKPAGMVVHPGHGNYTGTLVNALVHHLDQLPLNSDN------- 144
Query: 110 EDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYI 169
RPG+VHR+DK TSGLLV+AK E + A+L+ QF T R Y+
Sbjct: 145 ------------------RPGLVHRIDKETSGLLVIAKTEAAMANLARQFFDKTTRREYL 186
Query: 170 SLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSAL 229
+L G + SG +E PI R+P NR++M P + Q + A + Y+V E L G L
Sbjct: 187 ALVWGNVADDSGTVEGPIGRNPKNRLQMQVFPDGS---QGKEAVTHYRVEERL--GYVTL 241
Query: 230 VEWRLETGRTHQ 241
V RLETGRTHQ
Sbjct: 242 VSCRLETGRTHQ 253
>gi|323702053|ref|ZP_08113721.1| pseudouridine synthase, RluA family [Desulfotomaculum nigrificans
DSM 574]
gi|333923444|ref|YP_004497024.1| RluA family pseudouridine synthase [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323532935|gb|EGB22806.1| pseudouridine synthase, RluA family [Desulfotomaculum nigrificans
DSM 574]
gi|333749005|gb|AEF94112.1| pseudouridine synthase, RluA family [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 307
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 126/216 (58%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD V + + L+ E IPLDI YED++V+VVNKP MVVHPA GN +GTL
Sbjct: 52 NYKLRVGDRVAVEVPPAEELQVVPEPIPLDIYYEDNDVIVVNKPRGMVVHPAEGNTSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC D+ S I+G +RPGIVHRLDK TSGL++V
Sbjct: 112 VNALLYHC----------------RDL-------SGINGV-LRPGIVHRLDKDTSGLIMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L++Q K T+ R Y +L + G + PI RDP +R RMA + ++K
Sbjct: 148 AKNDLAHNSLAQQLKDRTVTRRYRALVHNNIREEVGTVNAPIGRDPRDRQRMAVVERNSK 207
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+V+E G LVE RLETGRTHQ
Sbjct: 208 -----PAVTHYRVLERF--GQYTLVECRLETGRTHQ 236
>gi|347534401|ref|YP_004841071.1| RNA pseudouridine synthase ylyB [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504457|gb|AEN99139.1| Uncharacterized RNA pseudouridine synthase ylyB [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 306
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 119/216 (55%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD + + Q L E E+I LDI+YED +VLVVNKP MVVHPAPG+ TL
Sbjct: 50 KYKVKKGDEITVEVPAPQKLDLEPENIKLDIIYEDKDVLVVNKPQGMVVHPAPGHPNHTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H +LP + + RPGIVHR+DK TSGLL+V
Sbjct: 110 VNALLYHTNLPNI-------------------------NGTFRPGIVHRIDKDTSGLLMV 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E + LS+Q K T R YI+L G + +G I+ P+ R P +R + A +
Sbjct: 145 AKSEVALKSLSQQLKNKTSRRKYIALVHGSIKEDTGTIDAPLGRSPKDRKKQAIV----- 199
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + +KV+E G L++ +LETGRTHQ
Sbjct: 200 -SDGRNAVTHFKVLERF-GNDYTLIQCQLETGRTHQ 233
>gi|407774742|ref|ZP_11122039.1| pseudouridylate synthase, 23S RNA-specific [Thalassospira
profundimaris WP0211]
gi|407282224|gb|EKF07783.1| pseudouridylate synthase, 23S RNA-specific [Thalassospira
profundimaris WP0211]
Length = 323
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 125/220 (56%), Gaps = 30/220 (13%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
+S VK GD+ + ++ E + EDI LD+++ED+++LV+NKPA MVVHPA GN +G
Sbjct: 52 KMSAKVKAGDVFDLSVPEPEMAEPTPEDIKLDVLFEDEDLLVINKPAGMVVHPAAGNESG 111
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L HC + S I G RPGIVHRLDK TSG +
Sbjct: 112 TLVNALLAHCG----------------------DSLSGIGGVK-RPGIVHRLDKDTSGAM 148
Query: 144 VVAKDEHSHAHLSEQF--KLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
VVAK++ +H LS F IER Y+++ GVP SG IE I R P NR +MA +
Sbjct: 149 VVAKNDAAHRALSNLFAEDKENIERAYLAVVWGVPRPRSGDIEGNIGRSPRNRKKMAVV- 207
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K G ++A + YK ++ ++LVE RL TGRTHQ
Sbjct: 208 ---KKG-GKYALTHYKTLQTRDDSLASLVECRLATGRTHQ 243
>gi|374340589|ref|YP_005097325.1| RluA family pseudouridine synthase [Marinitoga piezophila KA3]
gi|372102123|gb|AEX86027.1| pseudouridine synthase, RluA family [Marinitoga piezophila KA3]
Length = 307
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 124/218 (56%), Gaps = 34/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQP-LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
S+ VK G++V+ + + P + E+IPL+I+YED +++V+NKP M+VHP +GT
Sbjct: 52 SYKVKNGEVVSIEVPDKPPTIEVLPENIPLNIIYEDKDIIVINKPPSMIVHPVANKVSGT 111
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN IL+HC D + I G IRPGIVHRLDK TSG +V
Sbjct: 112 LVNAILYHCK-------------DLQGI-----------GGEIRPGIVHRLDKDTSGAIV 147
Query: 145 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
VAK++ +H LS QFK ++ YI+L G+ + G I P++R P RI+MA +PG
Sbjct: 148 VAKNDRAHQSLSAQFKDRKTKKTYIALVKGILKKKQGEINQPLARHPQIRIKMAVVPG-- 205
Query: 205 KHGQARHAASRYKVIEILAGGGSALVEW-RLETGRTHQ 241
+ + + YK+I+ G A + W L+TGRTHQ
Sbjct: 206 ----GKESITVYKIIKEF--GDKASLAWIHLKTGRTHQ 237
>gi|443320767|ref|ZP_21049847.1| pseudouridine synthase, RluA family [Gloeocapsa sp. PCC 73106]
gi|442789501|gb|ELR99154.1| pseudouridine synthase, RluA family [Gloeocapsa sp. PCC 73106]
Length = 310
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 125/215 (58%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+K GD ++ TI + PL + E I LDI+YEDD +L++NKPA +VVHPAPG+ +GT+VN
Sbjct: 56 KLKIGDRLHLTIPKAVPLELQPEAIALDILYEDDFLLIINKPAGLVVHPAPGHDSGTVVN 115
Query: 88 GILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+LHHC LP + G RPGIVHRLDK T+G +VVA
Sbjct: 116 ALLHHCPDLPGI-------------------------GEVKRPGIVHRLDKNTTGAMVVA 150
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + ++ HL Q + T +R YI + G PSQ G I++PI R+ + +MA +P
Sbjct: 151 KTDLAYQHLQAQIQAKTAQREYIGIVHGAPSQPQGIIDLPIGRNLTDHQKMAVVPQEKGG 210
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
QAR + +K++E L+ L+ ++L TGRTHQ
Sbjct: 211 RQAR---TTWKILERLS--NYTLMHFQLSTGRTHQ 240
>gi|254461389|ref|ZP_05074805.1| ribosomal large subunit pseudouridine synthase D [Rhodobacterales
bacterium HTCC2083]
gi|206677978|gb|EDZ42465.1| ribosomal large subunit pseudouridine synthase D [Rhodobacteraceae
bacterium HTCC2083]
Length = 341
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 123/233 (52%), Gaps = 49/233 (21%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+ G V+ T+ E E EDIPLD++YEDD+++VVNKPA MVVHPAPG +GTLVN
Sbjct: 59 KITAGAQVDITVEEAVDSHIEPEDIPLDVMYEDDDLIVVNKPAGMVVHPAPGTPSGTLVN 118
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVV 145
+LHH F+ +S G S RPG+VHR+DK T+GLLVV
Sbjct: 119 ALLHH-------------------------FAGKLSGVGGSKRPGVVHRIDKETTGLLVV 153
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE----------------VPISR 189
AK + +H L+ QF HT ER Y+++T G P S RI ++R
Sbjct: 154 AKSDAAHHGLAAQFAAHTAERAYLAVTQGAPEASDPRIRGVRGVSFETGGVLKVTTQLAR 213
Query: 190 DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
++R R A + RHA +R + IE ALVE RLETGRTHQ
Sbjct: 214 HKHDRQRQAVL-----FENGRHAVTRARTIERFGNPHCLALVECRLETGRTHQ 261
>gi|424714718|ref|YP_007015433.1| Uncharacterized RNA pseudouridine synthase YlyB [Listeria
monocytogenes serotype 4b str. LL195]
gi|424013902|emb|CCO64442.1| Uncharacterized RNA pseudouridine synthase YlyB [Listeria
monocytogenes serotype 4b str. LL195]
Length = 304
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 52 NYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 112 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 148 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVV----- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L+ +L+TGRTHQ
Sbjct: 203 -RDGKEARTHFEVLERLP--GYTLINCKLDTGRTHQ 235
>gi|373106341|ref|ZP_09520644.1| RluA family pseudouridine synthase [Stomatobaculum longum]
gi|371652716|gb|EHO18124.1| RluA family pseudouridine synthase [Stomatobaculum longum]
Length = 304
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 126/222 (56%), Gaps = 38/222 (17%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S+ + G+ ++ T+ E + E+IPLDI+YED +V+V+NKP MVVHPA G+ G
Sbjct: 48 KASYPLTAGERLSVTLPEPEATEVLPENIPLDILYEDKDVIVINKPKGMVVHPAAGHTGG 107
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSG 141
TLVN +L+HC S+SG + +RPGIVHR+D+ T+G
Sbjct: 108 TLVNALLYHCK-------------------------DSLSGINGILRPGIVHRIDRDTTG 142
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
+++ K++ +H ++EQ K H+I R Y++L G + G ++ P+ RDP NR RM
Sbjct: 143 VMIACKNDRAHQCIAEQLKAHSITRRYLALAQGRMQEEEGTVDAPLGRDPENRKRM---- 198
Query: 202 GSNKHGQ--ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K G +HA + Y+V+E A + +E RLETGRTHQ
Sbjct: 199 ---KSGMIGGKHAVTHYRVLERFA--AATYLECRLETGRTHQ 235
>gi|404329198|ref|ZP_10969646.1| pseudouridylate synthase [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 308
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K+ S+ V+ GD + +P E IPLDIVYED +VLVVNKP MVVHP+PG+
Sbjct: 50 KIRPSYRVQTGDKATLVLPAPEPAAVVPEAIPLDIVYEDHDVLVVNKPRGMVVHPSPGHM 109
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
+GTLVN +LHHC+ D+ S I+G +RPGIVHR+DK TSG
Sbjct: 110 SGTLVNALLHHCT----------------DL-------SGINGV-LRPGIVHRIDKDTSG 145
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL+VAK + +H L+ Q K + +R Y+++ GV +++ G I+ PI RD +R +MA
Sbjct: 146 LLMVAKTDSAHRSLAAQLKDKSTKRQYLAIVHGVIAENEGIIDAPIGRDARDRKKMAVTA 205
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+K A + +KV+E LV RLETGRTHQ
Sbjct: 206 DHSK-----QAVTHFKVLERFP--RYTLVACRLETGRTHQ 238
>gi|393718553|ref|ZP_10338480.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
echinoides ATCC 14820]
Length = 316
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 125/210 (59%), Gaps = 31/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G + + P A+DI L++V+EDD ++V++K A +VVHPA GNA GTLVN +LH
Sbjct: 64 GGLYLVAVPAPTPSHNAAQDIALNVVFEDDELIVIDKQAGLVVHPAAGNADGTLVNALLH 123
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC+ N S I G + RPGIVHR+DK TSGL+V AK + +
Sbjct: 124 HCA------GNL----------------SGIGGVA-RPGIVHRIDKDTSGLMVAAKTDRA 160
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L++QF H+I+R Y ++ SG P+ +G ++ P++R P+NR ++A +PG +
Sbjct: 161 HEGLAKQFHDHSIDRRYKAIVSGQPAPPTGTVDAPLARSPSNRKKIAIVPGGKR------ 214
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + IE L +ALVE RLETGRTHQ
Sbjct: 215 AVTHFTTIERLQ--DAALVECRLETGRTHQ 242
>gi|354595229|ref|ZP_09013265.1| RluA family pseudouridine synthase [Commensalibacter intestini
A911]
gi|353671521|gb|EHD13224.1| RluA family pseudouridine synthase [Commensalibacter intestini
A911]
Length = 329
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 126/218 (57%), Gaps = 33/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +VK GD + I + +P EA++I LDI+YED+ ++V+NK A +VVHPAPGN GTL
Sbjct: 61 STSVKEGDHIELQIPKAKPYILEAQEIALDILYEDEVLIVINKSAGLVVHPAPGNEDGTL 120
Query: 86 VNGILHHC--SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
VN +L HC LP + G RPGIVHRLDK TSG++
Sbjct: 121 VNALLAHCGDQLPGI-------------------------GGEKRPGIVHRLDKDTSGII 155
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK E + LSE F I+R+Y++L G+ + + G IE I RDP +R +MA + +
Sbjct: 156 VVAKTEQALTKLSEDFASRNIDRLYLALCWGILNPAKGTIEGDIGRDPYDRKKMAVVKRN 215
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + YK +EI+ S L++ +L+TGRTHQ
Sbjct: 216 GK-----FARTHYKTLEIINPAIS-LIQCKLDTGRTHQ 247
>gi|406990235|gb|EKE09914.1| hypothetical protein ACD_16C00100G0076 [uncultured bacterium]
Length = 326
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 133/240 (55%), Gaps = 36/240 (15%)
Query: 2 ELVELEFNQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDD 61
+L++ F Q++ +A+ V+ VK G + I + + IPLDI YED+
Sbjct: 42 DLIQTGFVQINGVAMN------DVALKVKEGQKIQINIPPVVEAAPVPQKIPLDIFYEDE 95
Query: 62 NVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSS 121
+++V+NKPA +VVHPAPGN GTLVN +L+HC E S
Sbjct: 96 DLIVLNKPAGLVVHPAPGNPEGTLVNALLNHCG----------------------ESLSG 133
Query: 122 ISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSG 181
I+G RPGIVHRLDK TSGL+VVAK++ +H L+ Q + RVY +L G G
Sbjct: 134 INGVK-RPGIVHRLDKDTSGLMVVAKNDKTHHSLAYQLATREMSRVYQALIWGTLIPHKG 192
Query: 182 RIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
IE PI RDP++R RMA + + A + YK I+I G ++LVE RLETGRTHQ
Sbjct: 193 IIEGPIGRDPHHRQRMAL------REKGKFARTHYKTIKIF-GRLASLVECRLETGRTHQ 245
>gi|441471608|emb|CCQ21363.1| Uncharacterized RNA pseudouridine synthase YlyB [Listeria
monocytogenes]
gi|441474742|emb|CCQ24496.1| Uncharacterized RNA pseudouridine synthase YlyB [Listeria
monocytogenes N53-1]
Length = 303
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVV----- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L+ +L+TGRTHQ
Sbjct: 202 -RDGKEARTHFEVLERLP--GYTLINCKLDTGRTHQ 234
>gi|217964005|ref|YP_002349683.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes HCC23]
gi|290893028|ref|ZP_06556017.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL J2-071]
gi|386008615|ref|YP_005926893.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes L99]
gi|386027223|ref|YP_005947999.1| putative 23S RNA-specific pseudouridine synthase D [Listeria
monocytogenes M7]
gi|404408287|ref|YP_006691002.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2376]
gi|422410090|ref|ZP_16487051.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL F2-208]
gi|217333275|gb|ACK39069.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes HCC23]
gi|290557388|gb|EFD90913.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL J2-071]
gi|307571425|emb|CAR84604.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes L99]
gi|313608111|gb|EFR84172.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL F2-208]
gi|336023804|gb|AEH92941.1| putative 23S RNA-specific pseudouridine synthase D [Listeria
monocytogenes M7]
gi|404242436|emb|CBY63836.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2376]
Length = 302
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVR---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L+ +L+TGRTHQ
Sbjct: 203 --DGKEARTHFEVLERLP--GYTLINCKLDTGRTHQ 234
>gi|46908075|ref|YP_014464.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes serotype 4b str. F2365]
gi|47094208|ref|ZP_00231922.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 4b H7858]
gi|226224446|ref|YP_002758553.1| hypothetical protein Lm4b_01859 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826115|ref|ZP_05231116.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL J1-194]
gi|254852749|ref|ZP_05242097.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL R2-503]
gi|254931987|ref|ZP_05265346.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes HPB2262]
gi|300763844|ref|ZP_07073841.1| RluA family ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes FSL N1-017]
gi|386732583|ref|YP_006206079.1| hypothetical protein MUO_09460 [Listeria monocytogenes 07PF0776]
gi|404281456|ref|YP_006682354.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2755]
gi|404287272|ref|YP_006693858.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750196|ref|YP_006673662.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes ATCC 19117]
gi|405753070|ref|YP_006676535.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2378]
gi|405756004|ref|YP_006679468.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2540]
gi|406704627|ref|YP_006754981.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes L312]
gi|417315489|ref|ZP_12102165.1| hypothetical protein LM1816_11407 [Listeria monocytogenes J1816]
gi|417317939|ref|ZP_12104540.1| hypothetical protein LM220_09240 [Listeria monocytogenes J1-220]
gi|424823604|ref|ZP_18248617.1| Pseudouridylate synthase [Listeria monocytogenes str. Scott A]
gi|46881345|gb|AAT04641.1| ribosomal large subunit pseudouridine synthase, RluA family
[Listeria monocytogenes serotype 4b str. F2365]
gi|47017415|gb|EAL08234.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 4b H7858]
gi|225876908|emb|CAS05617.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606073|gb|EEW18681.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL R2-503]
gi|293583538|gb|EFF95570.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes HPB2262]
gi|293595355|gb|EFG03116.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes FSL J1-194]
gi|300515580|gb|EFK42630.1| RluA family ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes FSL N1-017]
gi|328466193|gb|EGF37350.1| hypothetical protein LM1816_11407 [Listeria monocytogenes J1816]
gi|328473565|gb|EGF44402.1| hypothetical protein LM220_09240 [Listeria monocytogenes J1-220]
gi|332312284|gb|EGJ25379.1| Pseudouridylate synthase [Listeria monocytogenes str. Scott A]
gi|384391341|gb|AFH80411.1| hypothetical protein MUO_09460 [Listeria monocytogenes 07PF0776]
gi|404219396|emb|CBY70760.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes ATCC 19117]
gi|404222270|emb|CBY73633.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2378]
gi|404225204|emb|CBY76566.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2540]
gi|404228091|emb|CBY49496.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2755]
gi|404246201|emb|CBY04426.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361657|emb|CBY67930.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes L312]
Length = 303
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVV----- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L+ +L+TGRTHQ
Sbjct: 202 -RDGKEARTHFEVLERLP--GYTLINCKLDTGRTHQ 234
>gi|402297359|ref|ZP_10817131.1| large ribosomal pseudouridine synthesis protein [Bacillus
alcalophilus ATCC 27647]
gi|401727409|gb|EJT00599.1| large ribosomal pseudouridine synthesis protein [Bacillus
alcalophilus ATCC 27647]
Length = 304
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V D V ++ E + L EAE+IPLDIV+ED++V+VVNKP MVVHPAPG+ +GTL
Sbjct: 52 NYKVSDLDQVEVSVPEPEVLEVEAENIPLDIVFEDEDVIVVNKPRGMVVHPAPGHYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++HC +D+ S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 112 VNALMYHC----------------KDL-------SGINGV-IRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q K T +RVY ++ GV S +G I+ PI RD R M +N+
Sbjct: 148 AKNDQAHESLVSQLKAKTTKRVYQAIVHGVISHQTGTIDAPIGRDKKERQSMTV---TNE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +R A + + V++ V+ LETGRTHQ
Sbjct: 205 N--SREAVTHFTVLDRFT--NYTYVQCELETGRTHQ 236
>gi|329114084|ref|ZP_08242848.1| Ribosomal large subunit pseudouridine synthase D [Acetobacter
pomorum DM001]
gi|326696623|gb|EGE48300.1| Ribosomal large subunit pseudouridine synthase D [Acetobacter
pomorum DM001]
Length = 337
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 116/212 (54%), Gaps = 29/212 (13%)
Query: 30 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 89
+ G V TI P + EDI ++YEDD+++V++KPA +VVHPAPGN TGTLVNG+
Sbjct: 72 RAGMKVELTIPPAAPAVPQGEDISFTVLYEDDDLIVLDKPAGLVVHPAPGNETGTLVNGL 131
Query: 90 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDE 149
+ HC E I G RPGIVHRLDK TSG++V AK E
Sbjct: 132 IAHCG----------------------ESLKGIGGER-RPGIVHRLDKDTSGVMVAAKTE 168
Query: 150 HSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQA 209
+H LSE F I+R Y++ G+P+ + G E I RD +R RMA P K
Sbjct: 169 MAHQALSEDFAARRIDRTYLAFCWGLPNPAEGDFEGAIGRDKRDRKRMALTPKGGK---- 224
Query: 210 RHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+ ++ G G+ALV +L TGRTHQ
Sbjct: 225 -WALTHYRTLQAF-GTGAALVACKLATGRTHQ 254
>gi|116511823|ref|YP_809039.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris SK11]
gi|116107477|gb|ABJ72617.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris SK11]
Length = 301
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 131/226 (57%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + + VK GD + I + + L AED+PL+I+YED +V VVNKP MVVH
Sbjct: 39 VFVNNEAKKAKYKVKTGDRIEFEIPQAEVLDVAAEDLPLEIIYEDSDVAVVNKPQGMVVH 98
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+A+GTLVN I++H +D+ SSI+G IRPGIVHR+
Sbjct: 99 PAAGHASGTLVNAIMYHI----------------KDL-------SSINGV-IRPGIVHRI 134
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL++AK++ +H L+ Q K T +R Y+++ G + G IE PI R+ +R
Sbjct: 135 DKDTSGLLMIAKNDKAHESLAAQLKDKTSKRRYLAIVHGELANDKGTIEAPIGRNLKDRK 194
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + G + A + ++V+E G L+ RLETGRTHQ
Sbjct: 195 KQAVVSG------GKPAVTHFEVLERFV--GYTLIALRLETGRTHQ 232
>gi|225011533|ref|ZP_03701971.1| pseudouridine synthase, RluA family [Flavobacteria bacterium
MS024-2A]
gi|225004036|gb|EEG42008.1| pseudouridine synthase, RluA family [Flavobacteria bacterium
MS024-2A]
Length = 346
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 129/233 (55%), Gaps = 41/233 (17%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISE------LQPLRAEAEDIPLDIVYEDDNVLVVNK 68
++F+ +++ ++ VKGGD V S L P ED+PLDIV+EDD ++VVNK
Sbjct: 59 SIFVDGNEVKSNYKVKGGDKVKVLFSHPPYENLLVP-----EDMPLDIVFEDDILVVVNK 113
Query: 69 PAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 128
P MVVHP GN +GTL+NG+L+H F ++ R
Sbjct: 114 PPGMVVHPGHGNYSGTLLNGLLYH-------------------------FDQLPKNSNER 148
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 188
PG+VHR+DK TSGLLV+AK E + HL++QF T ER Y +L G + G IE I
Sbjct: 149 PGLVHRIDKDTSGLLVIAKTEQAMTHLAKQFFDKTSERKYSALVWGDVKEEEGTIEGAIG 208
Query: 189 RDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R P NR++MA ++ Q + A + +KVIE G L+E +LETGRTHQ
Sbjct: 209 RHPKNRLQMAVFEDNS---QGKEAKTHFKVIERF--GYVTLIECQLETGRTHQ 256
>gi|16803883|ref|NP_465368.1| hypothetical protein lmo1843 [Listeria monocytogenes EGD-e]
gi|47097693|ref|ZP_00235203.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 1/2a F6854]
gi|254829161|ref|ZP_05233848.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL N3-165]
gi|254912401|ref|ZP_05262413.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936728|ref|ZP_05268425.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes F6900]
gi|255027649|ref|ZP_05299635.1| hypothetical protein LmonocytFSL_17157 [Listeria monocytogenes FSL
J2-003]
gi|284802289|ref|YP_003414154.1| hypothetical protein LM5578_2045 [Listeria monocytogenes 08-5578]
gi|284995431|ref|YP_003417199.1| hypothetical protein LM5923_1996 [Listeria monocytogenes 08-5923]
gi|386044151|ref|YP_005962956.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes 10403S]
gi|386047496|ref|YP_005965828.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes J0161]
gi|386050820|ref|YP_005968811.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL R2-561]
gi|386054098|ref|YP_005971656.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes Finland 1998]
gi|404284339|ref|YP_006685236.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2372]
gi|404411144|ref|YP_006696732.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC5850]
gi|404413922|ref|YP_006699509.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC7179]
gi|405758894|ref|YP_006688170.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Listeria monocytogenes SLCC2479]
gi|16411297|emb|CAC99921.1| lmo1843 [Listeria monocytogenes EGD-e]
gi|47013931|gb|EAL04954.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes str. 1/2a F6854]
gi|258601571|gb|EEW14896.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL N3-165]
gi|258609325|gb|EEW21933.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes F6900]
gi|284057851|gb|ADB68792.1| hypothetical protein LM5578_2045 [Listeria monocytogenes 08-5578]
gi|284060898|gb|ADB71837.1| hypothetical protein LM5923_1996 [Listeria monocytogenes 08-5923]
gi|293590383|gb|EFF98717.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345534487|gb|AEO03928.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes J0161]
gi|345537385|gb|AEO06825.1| ribosomal large subunit pseudouridine synthase D [Listeria
monocytogenes 10403S]
gi|346424666|gb|AEO26191.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes FSL R2-561]
gi|346646749|gb|AEO39374.1| ribosomal large subunit pseudouridine synthase [Listeria
monocytogenes Finland 1998]
gi|404230970|emb|CBY52374.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC5850]
gi|404233841|emb|CBY55244.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2372]
gi|404236776|emb|CBY58178.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC2479]
gi|404239621|emb|CBY61022.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Listeria monocytogenes SLCC7179]
Length = 303
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVV----- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L+ +L+TGRTHQ
Sbjct: 202 -RDGKEARTHFEVLERLP--GYTLINCKLDTGRTHQ 234
>gi|254994200|ref|ZP_05276390.1| hypothetical protein LmonocytoFSL_15395 [Listeria monocytogenes FSL
J2-064]
Length = 296
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVR---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L+ +L+TGRTHQ
Sbjct: 203 --DGKEARTHFEVLERLP--GYTLINCKLDTGRTHQ 234
>gi|169831112|ref|YP_001717094.1| RluA family pseudouridine synthase [Candidatus Desulforudis
audaxviator MP104C]
gi|169637956|gb|ACA59462.1| pseudouridine synthase, RluA family [Candidatus Desulforudis
audaxviator MP104C]
Length = 309
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
SH V+GGD V + + + R E E IPL++ +ED +VLVVNKP +VVHPA G+ +GTL
Sbjct: 53 SHRVRGGDCVELKVPDPETPRIEPEAIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC D+ S I+G +RPGIVHRLD+ TSGLL+V
Sbjct: 113 VNALLHHC----------------RDL-------SGINGI-LRPGIVHRLDRDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K + R Y +L G P + +G ++ PI R P +R RMA P S
Sbjct: 149 AKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETGTVDAPIGRHPRDRQRMAVTPRS-- 206
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y+V+ +L+E L+TGRTHQ
Sbjct: 207 ---GRAARTHYRVVRRF--DKFSLLELTLDTGRTHQ 237
>gi|261367025|ref|ZP_05979908.1| ribosomal large subunit pseudouridine synthase D [Subdoligranulum
variabile DSM 15176]
gi|282571143|gb|EFB76678.1| pseudouridine synthase, RluA family [Subdoligranulum variabile DSM
15176]
Length = 310
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 122/203 (60%), Gaps = 27/203 (13%)
Query: 39 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 98
+ + +P+ A +DIPL IVYED++++VVNKP MVVHPAPGN GTLVN +L+HC+
Sbjct: 64 LPDPKPIEAVPQDIPLSIVYEDNDLIVVNKPKGMVVHPAPGNPDGTLVNALLYHCAGQL- 122
Query: 99 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQ 158
S I GA IRPGIVHR+DK TSGLLVVAK++ +H LS Q
Sbjct: 123 ---------------------SGIGGA-IRPGIVHRIDKDTSGLLVVAKNDVAHQALSSQ 160
Query: 159 FKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKV 218
+H+I RVY ++ G + G +E + RDP +R +MA + S AR+A + ++V
Sbjct: 161 MSVHSIHRVYHAIVYGNLKEDEGFVEAWLGRDPRDRKKMAVL--SENTTGARYAYTGWRV 218
Query: 219 IEILAGGGSALVEWRLETGRTHQ 241
+E G + +L+TGRTHQ
Sbjct: 219 LERF--GNFTYIACKLKTGRTHQ 239
>gi|288553139|ref|YP_003425074.1| large ribosomal pseudouridine synthesis protein [Bacillus
pseudofirmus OF4]
gi|288544299|gb|ADC48182.1| large ribosomal pseudouridine synthesis protein [Bacillus
pseudofirmus OF4]
Length = 304
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 119/209 (56%), Gaps = 31/209 (14%)
Query: 33 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 92
D V +I E + L AEDIPLD+VYED +V+VVNKP MVVHPAPG+ TGTLVN +L+H
Sbjct: 59 DQVTLSIPEPEELDVIAEDIPLDVVYEDADVIVVNKPRGMVVHPAPGHYTGTLVNALLYH 118
Query: 93 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSH 152
C +D+ S I+G IRPGIVHR+DK TSGLL+VAK++H+H
Sbjct: 119 C----------------KDL-------SGINGV-IRPGIVHRIDKDTSGLLMVAKNDHAH 154
Query: 153 AHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHA 212
L Q K T +R Y ++ GV G IE PI RD +R M + +R A
Sbjct: 155 ESLVSQLKAKTTKRHYKAIVHGVIPHQHGTIEAPIGRDKKDRQSMTVTEDN-----SRDA 209
Query: 213 ASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + V+E V+ LETGRTHQ
Sbjct: 210 VTHFTVLECFK--DFTYVQCELETGRTHQ 236
>gi|255029306|ref|ZP_05301257.1| hypothetical protein LmonL_09598 [Listeria monocytogenes LO28]
Length = 245
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVR---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L+ +L+TGRTHQ
Sbjct: 203 --DGKEARTHFEVLERLP--GYTLINCKLDTGRTHQ 234
>gi|229098363|ref|ZP_04229309.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-29]
gi|423441376|ref|ZP_17418282.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X2-1]
gi|423464450|ref|ZP_17441218.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-1]
gi|423533792|ref|ZP_17510210.1| RluA family pseudouridine synthase [Bacillus cereus HuB2-9]
gi|423540952|ref|ZP_17517343.1| RluA family pseudouridine synthase [Bacillus cereus HuB4-10]
gi|228685068|gb|EEL39000.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-29]
gi|401172140|gb|EJQ79361.1| RluA family pseudouridine synthase [Bacillus cereus HuB4-10]
gi|402418037|gb|EJV50337.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X2-1]
gi|402420717|gb|EJV52988.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-1]
gi|402464011|gb|EJV95711.1| RluA family pseudouridine synthase [Bacillus cereus HuB2-9]
Length = 302
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI + + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKENDEITVTIPDPEELDIQAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G +HA + ++V++ LVE RLETGRTHQ
Sbjct: 203 -DENG--KHAVTHFQVLDRFK--DFTLVECRLETGRTHQ 236
>gi|312622398|ref|YP_004024011.1| pseudouridine synthase, rlua family [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202865|gb|ADQ46192.1| pseudouridine synthase, RluA family [Caldicellulosiruptor
kronotskyensis 2002]
Length = 299
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 124/219 (56%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ VK GD++ I E + L A++I ++++YED+++ V+NKP MVVHP GN
Sbjct: 42 LKPAYKVKSGDIIKVVIPEPKQLSLVAQEIDIEVLYEDEHLAVINKPRGMVVHPGAGNFE 101
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +LH S SSI+G IRPGIVHRLDK TSGL
Sbjct: 102 NTLVNALLHKFSGRL----------------------SSINGV-IRPGIVHRLDKDTSGL 138
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK + +H LSE K H I+R+Y ++ GV + SG I PI R P NR++MA +P
Sbjct: 139 LVVAKTDEAHIKLSEALKSHQIKRIYYAICEGVLKEDSGVINAPIGRHPVNRLKMAVVP- 197
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E ++ RL+TGRTHQ
Sbjct: 198 -----NGKEAVTYFEVLERF--DKYTFIKLRLKTGRTHQ 229
>gi|305664420|ref|YP_003860707.1| ribosomal large subunit pseudouridine synthase D [Maribacter sp.
HTCC2170]
gi|88708437|gb|EAR00673.1| ribosomal large subunit pseudouridine synthase D [Maribacter sp.
HTCC2170]
Length = 341
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 124/219 (56%), Gaps = 35/219 (15%)
Query: 26 SHNVKGGDMVNCTISELQP--LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK GD V + E P L E+IPLDIVYEDD +LVVNKPA MVVHP GN TG
Sbjct: 66 NYKVKAGDEVKV-LFEHPPYELLLTPENIPLDIVYEDDVLLVVNKPAGMVVHPGHGNYTG 124
Query: 84 TLVNGILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TL+N +L+H LP +SN RPG+VHR+DK TSGL
Sbjct: 125 TLINALLYHSKDLP--VNSND------------------------RPGLVHRIDKDTSGL 158
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK E + HL++QF T ER Y++L G SG IE I+R+P NR++M P
Sbjct: 159 LVVAKTEAAMTHLAKQFFDKTSEREYVALVWGNVEDESGTIEGNIARNPKNRLQMQVFPE 218
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
Q + A + Y V+E L G LV +LETGRTHQ
Sbjct: 219 GE---QGKEAVTHYGVLERL--GYVTLVSCKLETGRTHQ 252
>gi|403379002|ref|ZP_10921059.1| hypothetical protein PJC66_04140 [Paenibacillus sp. JC66]
Length = 317
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 125/203 (61%), Gaps = 31/203 (15%)
Query: 39 ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTL 98
I E + L E EDI LD+VYED +V+VVNKP MVVHPAPG+A+GTLVN +L+HC
Sbjct: 79 IPEPEELSIEPEDIALDVVYEDSDVIVVNKPRGMVVHPAPGHASGTLVNALLYHC----- 133
Query: 99 ASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQ 158
+D+S I+G +RPGIVHR+DK TSGLL+ AK++ +HA L+ Q
Sbjct: 134 -----------KDLS-------GINGV-LRPGIVHRIDKDTSGLLMAAKNDKAHASLAAQ 174
Query: 159 FKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKV 218
K H++ R Y ++ G S G IE PI RDP++R ++ + N ++HA + + +
Sbjct: 175 LKEHSVNRKYKAIVHGTVSHEQGTIEAPIGRDPSDR-KLFTVTDRN----SKHAVTHFVL 229
Query: 219 IEILAGGGSALVEWRLETGRTHQ 241
+E + L+E +LETGRTHQ
Sbjct: 230 LEQMK--NHCLLELKLETGRTHQ 250
>gi|309792569|ref|ZP_07687031.1| RluA family pseudouridine synthase [Oscillochloris trichoides DG-6]
gi|308225383|gb|EFO79149.1| RluA family pseudouridine synthase [Oscillochloris trichoides DG6]
Length = 299
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 120/216 (55%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
SH ++ GD+V+ T+ QP+ E IPL +VYED +V+VV KPA MVVHPAPG+ GTL
Sbjct: 45 SHALRHGDLVSVTVPPAQPVALVPEAIPLHVVYEDADVVVVEKPAGMVVHPAPGHPNGTL 104
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L + G +RPGIVHRLD GTSGLLVV
Sbjct: 105 VNALL-------------------------ARYPDMQVGGDLRPGIVHRLDAGTSGLLVV 139
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
A+ + + HL+ + ++Y+++ G Q+ G I+ P+ R P++R+RMA P
Sbjct: 140 ARHDQALRHLTALQHARQMRKIYLAVAEGRFKQAEGLIDAPVGRHPHDRLRMAVTP---- 195
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y+V E L G L+E RLETGRTHQ
Sbjct: 196 --TGREARTHYRVCEEL--GNYTLLELRLETGRTHQ 227
>gi|407477639|ref|YP_006791516.1| hypothetical protein Eab7_1800 [Exiguobacterium antarcticum B7]
gi|407061718|gb|AFS70908.1| Hypothetical protein Eab7_1800 [Exiguobacterium antarcticum B7]
Length = 307
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 129/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ + G + + I E L E+IPLD+VYED +V+V+NKP MVVHPA G+ +GTL
Sbjct: 52 NYKMSGTEEILVRIPEAVELEVLPENIPLDVVYEDGDVIVINKPKGMVVHPAAGHVSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC +D+S I+G RPGIVHR+DK TSGLL+V
Sbjct: 112 VNALLHHC----------------QDLS-------GINGVK-RPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L++Q K T ER+YI+L G G IE P+ RD N+R RM ++K
Sbjct: 148 AKNDLAHESLAQQLKDKTTERLYIALVHGEIPHELGTIEAPVGRDKNDRQRMTV---TDK 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +A A + ++V+E G +VE +LETGRTHQ
Sbjct: 205 NSKA--AVTHFRVLERYE--GFTVVECKLETGRTHQ 236
>gi|452855493|ref|YP_007497176.1| pseudouridylate synthase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452079753|emb|CCP21510.1| pseudouridylate synthase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 304
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 128/227 (56%), Gaps = 33/227 (14%)
Query: 17 FLSMDKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+S++ SV N K GD VN TI E + L AE + LDI YED +VLVVNKP MVV
Sbjct: 41 LVSVNGKSVKANYKMQPGDQVNVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+ TGTLVNG++ HC+ D+ S I+G +RPGIVHR
Sbjct: 101 HPAPGHVTGTLVNGLMAHCN----------------DL-------SGINGV-MRPGIVHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+VAK++ +H L Q T+ R Y ++ GV S G I+ PI RD +R
Sbjct: 137 IDKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGVISHDDGTIDAPIGRDKKDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
M S+K +A + + V+E LVE RLETGRTHQ
Sbjct: 197 QSMTVTRESSK-----NAVTHFHVLERFQ--DFTLVECRLETGRTHQ 236
>gi|255522642|ref|ZP_05389879.1| hypothetical protein LmonocFSL_15771 [Listeria monocytogenes FSL
J1-175]
Length = 279
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVR---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L+ +L+TGRTHQ
Sbjct: 203 --DGKEARTHFEVLERLP--GYTLINCKLDTGRTHQ 234
>gi|385264670|ref|ZP_10042757.1| RNA pseudouridylate synthase [Bacillus sp. 5B6]
gi|385149166|gb|EIF13103.1| RNA pseudouridylate synthase [Bacillus sp. 5B6]
Length = 304
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 128/227 (56%), Gaps = 33/227 (14%)
Query: 17 FLSMDKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+S++ SV N K GD VN TI E + L AE + LDI YED +VLVVNKP MVV
Sbjct: 41 LVSVNGKSVKANYKMQPGDQVNVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+ TGTLVNG++ HC+ D+ S I+G +RPGIVHR
Sbjct: 101 HPAPGHVTGTLVNGLMAHCN----------------DL-------SGINGV-MRPGIVHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+VAK++ +H L Q T+ R Y ++ GV S G I+ PI RD +R
Sbjct: 137 IDKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGVISHDDGTIDAPIGRDKKDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
M S+K +A + + V+E LVE RLETGRTHQ
Sbjct: 197 QSMTVTRESSK-----NAVTHFHVLERFQ--DFTLVECRLETGRTHQ 236
>gi|347542602|ref|YP_004857239.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Arthromitus sp. SFB-rat-Yit]
gi|346985638|dbj|BAK81313.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Arthromitus sp. SFB-rat-Yit]
Length = 301
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 131/227 (57%), Gaps = 32/227 (14%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+F++ + S+ + GD ++ E++ L ++I LD+VYED +++++NKP M+V
Sbjct: 41 KIFVNGKSVKASYKTRMGDEISILDFEIKRLEVLEQNIVLDVVYEDSDIIIINKPKGMIV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPA TLVN +++HC +D+S SI+G RPGI+HR
Sbjct: 101 HPAQNVYKDTLVNALMYHC----------------KDLS-------SINGVE-RPGIIHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGL+VVAK++ +H L EQFK+H+I+R Y++L G+ +S G IE I R+P +R
Sbjct: 137 IDKDTSGLIVVAKNDFAHKFLGEQFKVHSIKREYVALVHGIIKKSKGLIETNIGRNPKDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
I+M + + + A + YKV+ L++ +L TGRTHQ
Sbjct: 197 IKMGVVQ------KGKEAITEYKVLR--RYRRCTLIKCKLYTGRTHQ 235
>gi|154685962|ref|YP_001421123.1| hypothetical protein RBAM_015290 [Bacillus amyloliquefaciens FZB42]
gi|394993883|ref|ZP_10386622.1| YlyB [Bacillus sp. 916]
gi|429505097|ref|YP_007186281.1| hypothetical protein B938_07935 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154351813|gb|ABS73892.1| YlyB [Bacillus amyloliquefaciens FZB42]
gi|393805207|gb|EJD66587.1| YlyB [Bacillus sp. 916]
gi|429486687|gb|AFZ90611.1| hypothetical protein B938_07935 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 304
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 128/227 (56%), Gaps = 33/227 (14%)
Query: 17 FLSMDKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+S++ SV N K GD VN TI E + L AE + LDI YED +VLVVNKP MVV
Sbjct: 41 LVSVNGKSVKANYKMQPGDQVNVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+ TGTLVNG++ HC+ D+ S I+G +RPGIVHR
Sbjct: 101 HPAPGHVTGTLVNGLMAHCN----------------DL-------SGINGV-MRPGIVHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+VAK++ +H L Q T+ R Y ++ GV S G I+ PI RD +R
Sbjct: 137 IDKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGVISHDDGTIDAPIGRDKKDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
M S+K +A + + V+E LVE RLETGRTHQ
Sbjct: 197 QSMTVTRESSK-----NAVTHFHVLERFQ--DFTLVECRLETGRTHQ 236
>gi|254294738|ref|YP_003060761.1| pseudouridine synthase [Hirschia baltica ATCC 49814]
gi|254043269|gb|ACT60064.1| pseudouridine synthase, RluA family [Hirschia baltica ATCC 49814]
Length = 369
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 128/223 (57%), Gaps = 50/223 (22%)
Query: 44 PLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS--LPTLA 99
PL AE EDIPLD+++ED++++++NKPA +VVHPAPG+ +GTLVN +LHHC+ LP +
Sbjct: 86 PLDAEPLPEDIPLDVLFEDEHLIILNKPAGLVVHPAPGSTSGTLVNALLHHCAGQLPGI- 144
Query: 100 SSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQF 159
G RPGIVHRLDK TSG++V AK E +H LS F
Sbjct: 145 ------------------------GGVARPGIVHRLDKDTSGVMVAAKTEFAHTGLSSLF 180
Query: 160 KLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI------PGSNKHGQA---- 209
+ H +ER Y+++T G P G+IE I+R +R +MA + + HG++
Sbjct: 181 QAHFMERAYLAVTRGAPRPLLGKIETRIARSTTDRKKMAVVRESRLSASAEWHGESEEDY 240
Query: 210 ----RHAASRYKVIE----ILAGGG---SALVEWRLETGRTHQ 241
+HA + YKV+E I A G + L E RLETGRTHQ
Sbjct: 241 EQKGKHAITNYKVLEQFGRIDATSGLPAATLTECRLETGRTHQ 283
>gi|225628223|ref|ZP_03786257.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
gi|261757311|ref|ZP_06001020.1| ribosomal large subunit pseudouridine synthase [Brucella sp. F5/99]
gi|225616069|gb|EEH13117.1| pseudouridine synthase, RluA family protein [Brucella ceti str.
Cudo]
gi|261737295|gb|EEY25291.1| ribosomal large subunit pseudouridine synthase [Brucella sp. F5/99]
Length = 334
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 127/226 (56%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + +SE +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 51 TKQKLREGMNIAIVLSEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 110
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++HC + S I G RPGIVHRLDK TSG++V
Sbjct: 111 LVNALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 147
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ +H HLSEQF H +ER Y++L G+ + G ++ + R +R + A +
Sbjct: 148 VAKNDRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQAVV 207
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 208 --HEEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQ 251
>gi|421878749|ref|ZP_16310227.1| Pseudouridine synthase [Leuconostoc citreum LBAE C11]
gi|390447445|emb|CCF26347.1| Pseudouridine synthase [Leuconostoc citreum LBAE C11]
Length = 307
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 130/226 (57%), Gaps = 33/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ ++ S+ V GD++ +Q AE++PLDI+YED+++LVVNKP MVVH
Sbjct: 41 IVVNQTQVKRSYKVNSGDLITILPPAVQNTEIIAENMPLDIIYEDNDLLVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ +GTLVN +L+H L S+I+G S RPGIVHR+
Sbjct: 101 PAAGHTSGTLVNALLYHAPL------------------------STING-SFRPGIVHRI 135
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
D+ TSGLL+VAK++ +H LSEQ K H ER+Y +L G S+ SG I P++R +R
Sbjct: 136 DRDTSGLLMVAKNDKAHQSLSEQLKAHKNERIYYALVRGEFSEDSGTINAPLARHKVDRK 195
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A G R A + ++V+ G L++ RLETGRTHQ
Sbjct: 196 KQAVQAG------GREAITHFEVVTRYV--GYTLLKIRLETGRTHQ 233
>gi|407796629|ref|ZP_11143582.1| pseudouridine synthase [Salimicrobium sp. MJ3]
gi|407019145|gb|EKE31864.1| pseudouridine synthase [Salimicrobium sp. MJ3]
Length = 302
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD+V ++ E++P E E+IPL IVYED++VLVVNKP MVVHP+ G+ +GTL
Sbjct: 51 NYKIQEGDLVAWSVPEVKPAAIEKENIPLTIVYEDEDVLVVNKPVGMVVHPSAGHYSGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L+HC DD S I+G RPGIVHR+DK TSGLL+V
Sbjct: 111 VNGLLYHC--------------------DD---LSGINGVE-RPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H HL++Q + T+ER Y ++ GV + G I+ PI RDP R RMA
Sbjct: 147 AKHDKAHQHLADQLQEKTVEREYEAIAHGVIAHDHGTIDAPIGRDPKERQRMAVTE---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + + V +LETGRTHQ
Sbjct: 203 --EGKDAVTHFTVERRFEEFTHLTC--KLETGRTHQ 234
>gi|340616685|ref|YP_004735138.1| ribosomal large subunit pseudouridine synthase D [Zobellia
galactanivorans]
gi|339731482|emb|CAZ94747.1| Ribosomal large subunit pseudouridine synthase D [Zobellia
galactanivorans]
Length = 342
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 125/219 (57%), Gaps = 35/219 (15%)
Query: 26 SHNVKGGDMVNCTISELQP--LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK GD V + E P AEDIP+DIVYEDD +LVVNKPA MVVHP GN +G
Sbjct: 66 NYKVKPGDEVKV-LFEHPPHEFLLVAEDIPIDIVYEDDVLLVVNKPAGMVVHPGHGNYSG 124
Query: 84 TLVNGILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TL+N +LHH LP +SN+ RPG+VHR+DK TSGL
Sbjct: 125 TLINALLHHIKDLP--VNSNE------------------------RPGLVHRIDKDTSGL 158
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK E + HL++QF T ER YI+L G G IE I+R+P NR++M P
Sbjct: 159 LVVAKTEAAMTHLAKQFFDKTSEREYIALVWGNVEDDHGTIEGNIARNPKNRLQMQVFPE 218
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + + A + Y VIE L G LV +LETGRTHQ
Sbjct: 219 GD---EGKEAVTHYSVIERL--GYVTLVSCKLETGRTHQ 252
>gi|170017468|ref|YP_001728387.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc citreum
KM20]
gi|414596874|ref|ZP_11446447.1| Pseudouridine synthase [Leuconostoc citreum LBAE E16]
gi|421876752|ref|ZP_16308306.1| Pseudouridine synthase [Leuconostoc citreum LBAE C10]
gi|169804325|gb|ACA82943.1| Pseudouridylate synthase, 23S RNA-specific [Leuconostoc citreum
KM20]
gi|372557430|emb|CCF24426.1| Pseudouridine synthase [Leuconostoc citreum LBAE C10]
gi|390482526|emb|CCF28508.1| Pseudouridine synthase [Leuconostoc citreum LBAE E16]
Length = 307
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 130/226 (57%), Gaps = 33/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ ++ S+ V GD++ +Q AE++PLDI+YED+++LVVNKP MVVH
Sbjct: 41 IVVNQTQVKRSYKVNSGDLITILPPAVQNTEIIAENMPLDIIYEDNDLLVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ +GTLVN +L+H L S+I+G S RPGIVHR+
Sbjct: 101 PAAGHTSGTLVNALLYHAPL------------------------STING-SFRPGIVHRI 135
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
D+ TSGLL+VAK++ +H LSEQ K H ER+Y +L G S+ SG I P++R +R
Sbjct: 136 DRDTSGLLMVAKNDKAHQALSEQLKAHKNERIYYALVRGEFSEDSGTINAPLARHKVDRK 195
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A G R A + ++V+ G L++ RLETGRTHQ
Sbjct: 196 KQAVQAG------GREAITHFEVVTRYV--GYTLLKIRLETGRTHQ 233
>gi|345303045|ref|YP_004824947.1| RluA family pseudouridine synthase [Rhodothermus marinus
SG0.5JP17-172]
gi|345112278|gb|AEN73110.1| pseudouridine synthase, RluA family [Rhodothermus marinus
SG0.5JP17-172]
Length = 355
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD++ I P+ E IPLDIVYED ++VVNK A +VVHPA GN +GTL
Sbjct: 58 AYTVQPGDVITLRILRPPPVEIVPEPIPLDIVYEDPYLIVVNKQAGLVVHPARGNRSGTL 117
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASI---RPGIVHRLDKGTSGL 142
VN +L+H + ++ + ++I S+ + A + RPGIVHRLDK T+GL
Sbjct: 118 VNALLYHIGSGPVRFDEEDDLPEDDEIGLSM-VSTGPTEAKLEAPRPGIVHRLDKDTTGL 176
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
+VVAKD+ +H L+ QF+ TI R Y+++ GVP GRIE I RDP +R RMA +P
Sbjct: 177 IVVAKDDVTHTGLARQFEHRTIARTYLAIVWGVPDPPWGRIEAAIGRDPRDRQRMAVVPD 236
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + Y+V+E L +ALV ++LETGRTHQ
Sbjct: 237 E----RGKRAVTHYEVVEALP--AAALVRFKLETGRTHQ 269
>gi|253681471|ref|ZP_04862268.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
gi|253561183|gb|EES90635.1| ribosomal large subunit pseudouridine synthase D [Clostridium
botulinum D str. 1873]
Length = 304
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 127/208 (61%), Gaps = 34/208 (16%)
Query: 34 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 93
+VN +E Q + E+I LDI+YED +++V+NKP MVVHPA N +GTLVNG+L+HC
Sbjct: 62 IVNNIENEFQ--KINPENIDLDILYEDKDIIVINKPQGMVVHPATSNYSGTLVNGLLYHC 119
Query: 94 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHA 153
TL++ N + RPGIVHR+DK TSG+LVVAK+ +H
Sbjct: 120 D--TLSTLNDDT----------------------RPGIVHRIDKDTSGVLVVAKNNKAHE 155
Query: 154 HLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAA 213
L+EQ K H+++R YI+L G+ + +G I+ P+ R+P +RI+MA + + ++A
Sbjct: 156 VLAEQLKEHSMKREYIALVEGILKKDNGFIDKPLGRNPKDRIKMAVVQ------EGKNAI 209
Query: 214 SRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ Y+V++ + LV+ LETGRTHQ
Sbjct: 210 THYEVLKRFK--KNTLVKCILETGRTHQ 235
>gi|333371293|ref|ZP_08463249.1| ribosomal large subunit pseudouridine synthase D, partial
[Desmospora sp. 8437]
gi|332976359|gb|EGK13213.1| ribosomal large subunit pseudouridine synthase D [Desmospora sp.
8437]
Length = 270
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 129/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+H ++GG+ V + + + E +PL++V+ED +V++VNKP MVVHPAPG+ +GTL
Sbjct: 16 NHRLQGGEQVEVAVPPPEEAEVKPEALPLEVVFEDGDVIMVNKPRGMVVHPAPGSPSGTL 75
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC +D+S G +RPGIVHR+DK TSGL++V
Sbjct: 76 VNALLAHC----------------DDLSG--------IGGVLRPGIVHRIDKDTSGLIMV 111
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K HT++R Y +L G G ++ PI RDP++R RMA ++
Sbjct: 112 AKNDFAHRSLAAQLKNHTVDREYTALVQGNIPHDRGTVDAPIGRDPHHRKRMAV---EHR 168
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HG+ A + ++VIE + + L+ RLETGRTHQ
Sbjct: 169 HGKP--AVTHFEVIERFS--RATLIRCRLETGRTHQ 200
>gi|261219246|ref|ZP_05933527.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261316161|ref|ZP_05955358.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|261322307|ref|ZP_05961504.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|265987225|ref|ZP_06099782.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
gi|265998740|ref|ZP_06111297.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|260924335|gb|EEX90903.1| pseudouridine synthase [Brucella ceti M13/05/1]
gi|261294997|gb|EEX98493.1| pseudouridine synthase [Brucella ceti M644/93/1]
gi|261295384|gb|EEX98880.1| pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|262553429|gb|EEZ09198.1| pseudouridine synthase [Brucella ceti M490/95/1]
gi|264659422|gb|EEZ29683.1| pseudouridine synthase [Brucella pinnipedialis M292/94/1]
Length = 334
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 127/226 (56%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + +SE +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 51 TKQKLREGMNIAIVLSEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 110
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++HC + S I G RPGIVHRLDK TSG++V
Sbjct: 111 LVNALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 147
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ +H HLSEQF H +ER Y++L G+ + G ++ + R +R + A +
Sbjct: 148 VAKNDRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQAVV 207
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 208 --HEEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQ 251
>gi|125624328|ref|YP_001032811.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris MG1363]
gi|389854689|ref|YP_006356933.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris NZ9000]
gi|124493136|emb|CAL98100.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris MG1363]
gi|300071111|gb|ADJ60511.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris NZ9000]
Length = 301
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 131/226 (57%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + + VK GD + I + + L AED+PL+I+YED +V VVNKP MVVH
Sbjct: 39 VFVNNEAKKAKYKVKTGDRIQFEIPQAEVLDVVAEDLPLEIIYEDSDVAVVNKPQGMVVH 98
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+A+GTLVN I++H +D+ SSI+G IRPGIVHR+
Sbjct: 99 PAAGHASGTLVNAIMYHI----------------KDL-------SSINGV-IRPGIVHRI 134
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL++AK++ +H L+ Q K T +R Y+++ G + G IE PI R+ +R
Sbjct: 135 DKDTSGLLMIAKNDKAHESLAAQLKDKTSKRRYLAIVHGELANDKGTIEAPIGRNLKDRK 194
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + G + A + ++V+E G L+ RLETGRTHQ
Sbjct: 195 KQAVVSG------GKPAVTHFEVLEGFV--GYTLIALRLETGRTHQ 232
>gi|399052196|ref|ZP_10741761.1| pseudouridine synthase, RluA family [Brevibacillus sp. CF112]
gi|433545647|ref|ZP_20501997.1| pseudouridine synthase [Brevibacillus agri BAB-2500]
gi|398050062|gb|EJL42452.1| pseudouridine synthase, RluA family [Brevibacillus sp. CF112]
gi|432183045|gb|ELK40596.1| pseudouridine synthase [Brevibacillus agri BAB-2500]
Length = 309
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ D V + + + + E +PL+IVYED +V+VVNKP +VVHPAPG+ +GTL
Sbjct: 58 NYKLQAEDEVTLRVPPPKEMAIKPEPMPLEIVYEDSDVVVVNKPRGLVVHPAPGHYSGTL 117
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L HC +D+S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 118 VNGLLAHC----------------KDLS-------GINGV-LRPGIVHRIDKDTSGLLMV 153
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ K H++ R Y+++ GV G I+ PI RDP NR +MA +
Sbjct: 154 AKNDKAHVGLAEQLKEHSVTRTYVAIVHGVIPHEMGTIDAPIGRDPKNRQQMAVV----- 208
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ A + + V+E LVE +LETGRTHQ
Sbjct: 209 FENSKPAVTHFIVLERFK--EYTLVELKLETGRTHQ 242
>gi|428226934|ref|YP_007111031.1| ribosomal large subunit pseudouridine synthase D [Geitlerinema sp.
PCC 7407]
gi|427986835|gb|AFY67979.1| ribosomal large subunit pseudouridine synthase D [Geitlerinema sp.
PCC 7407]
Length = 323
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 29/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
++ GD + I +PL + E IPLDI+YEDD++L++NKPA MVVHPAPG++ GTLV+
Sbjct: 69 LQAGDRIEIVIPAPEPLDLQPEAIPLDILYEDDSLLILNKPAGMVVHPAPGHSEGTLVHA 128
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC S + G RPGIVHRLDK T+G LV+AK
Sbjct: 129 LLAHCD------------------------SLAGIGGVQRPGIVHRLDKETTGALVIAKT 164
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ ++ HL Q + T R Y+++ G P + SG ++ PI R P +R +MA +P
Sbjct: 165 DLAYQHLQAQIQAKTARREYLAVVYGAPREESGTVDQPIGRHPVDRKKMAILPIEQG--- 221
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L G L+++ LETGRTHQ
Sbjct: 222 GRRAVTHWRIRERL--GNYTLIDFELETGRTHQ 252
>gi|372223509|ref|ZP_09501930.1| RluA family pseudouridine synthase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 342
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 125/218 (57%), Gaps = 33/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRA--EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK GD+V + E P E IPLDIVYEDD+++VVNKPA MVVHP GN +G
Sbjct: 66 NYKVKAGDVVKV-LFEHPPYEYLLTPEAIPLDIVYEDDHLMVVNKPAGMVVHPGHGNYSG 124
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +++H F S + +S RPG+VHR+DK TSGLL
Sbjct: 125 TLVNALVYH-------------------------FESLPNNSSGRPGLVHRIDKDTSGLL 159
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
V+AK E + HL+ QF T +R YI+L G + G IE ++R+P NR++M P
Sbjct: 160 VIAKTEEAMTHLANQFFEKTSKREYIALVWGNIEEDEGTIEGHLARNPKNRLQMMVFPDG 219
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ Q + A + +KV+E L G LV +LETGRTHQ
Sbjct: 220 D---QGKEAVTHFKVLERL--GYVTLVSCKLETGRTHQ 252
>gi|261222782|ref|ZP_05937063.1| ribosomal large subunit pseudouridine synthase D [Brucella ceti
B1/94]
gi|340791252|ref|YP_004756717.1| RluA family pseudouridine synthase [Brucella pinnipedialis B2/94]
gi|260921366|gb|EEX88019.1| ribosomal large subunit pseudouridine synthase D [Brucella ceti
B1/94]
gi|340559711|gb|AEK54949.1| RluA family pseudouridine synthase [Brucella pinnipedialis B2/94]
Length = 347
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 127/226 (56%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + +SE +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 64 TKQKLREGMNIAIVLSEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 123
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++HC + S I G RPGIVHRLDK TSG++V
Sbjct: 124 LVNALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 160
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ +H HLSEQF H +ER Y++L G+ + G ++ + R +R + A +
Sbjct: 161 VAKNDRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQAVV 220
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 221 --HEEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQ 264
>gi|154252611|ref|YP_001413435.1| RluA family pseudouridine synthase [Parvibaculum lavamentivorans
DS-1]
gi|154156561|gb|ABS63778.1| pseudouridine synthase, RluA family [Parvibaculum lavamentivorans
DS-1]
Length = 482
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 120/220 (54%), Gaps = 27/220 (12%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK G+ ++ ++ P + + IPL+IVYED +++VV KPA +VVHPAPGN TL
Sbjct: 198 SYRVKAGERLSVSVPPPTPAKPAGQAIPLEIVYEDADLIVVMKPAGLVVHPAPGNPDMTL 257
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC E S I G RPGIVHRLDK TSGL+VV
Sbjct: 258 VNALVAHCG----------------------ETLSGIGGEK-RPGIVHRLDKETSGLMVV 294
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK + +H LS QF H + R Y +LT GVP G ++ I+R +NR +MA +
Sbjct: 295 AKTDRAHQGLSAQFAAHGRDGKLTRAYTALTWGVPQTRKGTVDANIARSSHNRSKMATVR 354
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R A + Y V A G A VE RLETGRTHQ
Sbjct: 355 DRGEETGGRIAITHYTVKTDYADGLVAEVECRLETGRTHQ 394
>gi|431796026|ref|YP_007222930.1| RluA family pseudouridine synthase [Echinicola vietnamensis DSM
17526]
gi|430786791|gb|AGA76920.1| pseudouridine synthase, RluA family [Echinicola vietnamensis DSM
17526]
Length = 364
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 33/219 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ +K GD++ + E++P E E + LDIV+EDD++LVVNKPA MVVHPA GN TG
Sbjct: 87 NYKIKPGDVITVVL-EMEPRETEVLPEKLDLDIVHEDDHLLVVNKPAGMVVHPAYGNWTG 145
Query: 84 TLVNGILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVNG+++H S LP + G S RPG+VHR+DK TSGL
Sbjct: 146 TLVNGLVYHFSQLP------------------------EMPGNSGRPGLVHRIDKDTSGL 181
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LV+AK E + L++QF H+IER YI+L G P + +G I+ + R +R M P
Sbjct: 182 LVIAKSEQAMTGLAKQFFDHSIERTYIALVWGEPQEDAGTIDAHVGRSARDRKVMDVFPE 241
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ Q ++A + +KV++ L +LV+ LETGRTHQ
Sbjct: 242 GD---QGKNAVTHWKVLKRLR--YVSLVQCNLETGRTHQ 275
>gi|428776662|ref|YP_007168449.1| ribosomal large subunit pseudouridine synthase D [Halothece sp. PCC
7418]
gi|428690941|gb|AFZ44235.1| ribosomal large subunit pseudouridine synthase D [Halothece sp. PCC
7418]
Length = 309
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ GD + ++ LQPL E E IPLDI+YED+++++VNKPA +VVHPAPG+ +GTL
Sbjct: 52 KQGIEAGDRLILSVPPLQPLSVEPEAIPLDILYEDEHLIIVNKPAGLVVHPAPGHESGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + + I G RPGIVHRLDK T+G +VV
Sbjct: 112 VNALLAHC-----------------------DHLAGIGGVE-RPGIVHRLDKDTTGAIVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H HL +Q ++ T +R Y+ L GVP G I+ PI R +R +MA + K
Sbjct: 148 AKNDFAHQHLQKQIQVKTAKREYLGLIYGVPKGVEGIIDRPIGRHRVDRKKMAVV-AVEK 206
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G R A + +++ E L G +L+ ++LETGRTHQ
Sbjct: 207 GG--RTAITHWQLEERL--GNYSLLAFQLETGRTHQ 238
>gi|406027009|ref|YP_006725841.1| pseudouridine synthase D [Lactobacillus buchneri CD034]
gi|405125498|gb|AFS00259.1| pseudouridine synthase D [Lactobacillus buchneri CD034]
Length = 302
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 120/216 (55%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD + + P+ E E+IPLDIVYEDD+V+VVNKP MVVHP+PG+ TL
Sbjct: 48 KYQVKSGDKIQVDSVQPTPISLEPENIPLDIVYEDDDVIVVNKPQGMVVHPSPGHPDHTL 107
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H L S+I+G RPGIVHR+DK TSGLL+V
Sbjct: 108 VNALLYHSPL------------------------STING-EFRPGIVHRIDKDTSGLLMV 142
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS+Q K R Y++L G + SG + PI R P +R + A +
Sbjct: 143 AKNDKAHQFLSQQLKAQKNLRKYVALVHGRIKEDSGVVNAPIGRSPKDRKKQAVV----- 197
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+E A LV RLETGRTHQ
Sbjct: 198 -SDGRSAVTHFEVLERFA--DYTLVACRLETGRTHQ 230
>gi|153853142|ref|ZP_01994551.1| hypothetical protein DORLON_00536 [Dorea longicatena DSM 13814]
gi|149753928|gb|EDM63859.1| pseudouridine synthase, RluA family [Dorea longicatena DSM 13814]
Length = 272
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 121/210 (57%), Gaps = 30/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V T+ E + E+IPLDI+YED +++++NKP MVVHPAPG+ +GTLVN +++
Sbjct: 22 GDSVEVTLPEAKEPDIVPENIPLDILYEDQDIIMINKPKQMVVHPAPGHYSGTLVNALMY 81
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC DE S I+G +RPGIVHR+D T+G LVV K++ +
Sbjct: 82 HCG--------------------DE--LSGINGC-MRPGIVHRIDMDTTGSLVVCKNDKA 118
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H LSEQ K+H+I R+Y+++ G + SG + PI R P +R +M S R
Sbjct: 119 HQSLSEQLKVHSIRRIYVAIVHGNIKEDSGTVNAPIGRHPTDRKKM-----STHCKNGRD 173
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + YKV+E G ++ LETGRTHQ
Sbjct: 174 AVTHYKVLERF--GDYTYIQCELETGRTHQ 201
>gi|366162122|ref|ZP_09461877.1| ribosomal large subunit pseudouridine synthase D [Acetivibrio
cellulolyticus CD2]
Length = 304
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 124/216 (57%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D + I E + L E+I + ++YED++VLVVNKP MVVHPA GN +GTL
Sbjct: 50 NYKIKSSDEITVQIPEPEVLDIVPENIEIPVLYEDEHVLVVNKPKGMVVHPAAGNYSGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ +C + SSI+G IRPGIVHR+DK TSG+LVV
Sbjct: 110 VNALMDYCG----------------------DSLSSINGV-IRPGIVHRIDKDTSGVLVV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK +H LS + K H I RVY++L G+ + SG+I+ PI R P +R +MA
Sbjct: 147 AKSNEAHEKLSLKLKDHDINRVYVALVHGIIREESGKIDAPIGRHPVDRKKMAV-----N 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV+E + LVE +LETGRTHQ
Sbjct: 202 TNNGRRAVTYFKVLERFK--DATLVEVKLETGRTHQ 235
>gi|347521451|ref|YP_004779022.1| pseudouridine synthase [Lactococcus garvieae ATCC 49156]
gi|385832835|ref|YP_005870610.1| pseudouridine synthase [Lactococcus garvieae Lg2]
gi|343180019|dbj|BAK58358.1| pseudouridine synthase [Lactococcus garvieae ATCC 49156]
gi|343181988|dbj|BAK60326.1| pseudouridine synthase [Lactococcus garvieae Lg2]
Length = 301
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 123/210 (58%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G+ + + E++ L +AEDIPLDIVYED +V V+NKP MVVHP+ G+A+GTLVN I++
Sbjct: 55 GEAIAYELPEVEVLDIQAEDIPLDIVYEDSDVAVINKPQGMVVHPSAGHASGTLVNAIMY 114
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
H +D+ SSI+G IRPGIVHR+DK TSGLL++AK++ +
Sbjct: 115 HI----------------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAKNDAA 150
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K T +R YI+L G S G IE PI R+P R + A I G +
Sbjct: 151 HESLAAQLKAKTNKRRYIALVHGELSNEKGTIEAPIGRNPKERKKQAVISG------GKP 204
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E G LV LETGRTHQ
Sbjct: 205 AKTHFTVMERFP--GYTLVALELETGRTHQ 232
>gi|315303759|ref|ZP_07874262.1| ribosomal large subunit pseudouridine synthase D [Listeria ivanovii
FSL F6-596]
gi|313627868|gb|EFR96498.1| ribosomal large subunit pseudouridine synthase D [Listeria ivanovii
FSL F6-596]
Length = 302
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 137/246 (55%), Gaps = 39/246 (15%)
Query: 3 LVELEFNQVSVLALFLSMDKLSVS-------HNVKGGDMVNCTISELQPLRAEAEDIPLD 55
+ EL S + + L ++VS + V+ GD ++ + E + L AEDIPLD
Sbjct: 21 VAELTGKSRSAIQIMLKNGDITVSGEIAKPNYKVQVGDEIHLEVREPEELEVLAEDIPLD 80
Query: 56 IVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDD 115
I +ED ++LVVNKP MVVHP+ G+A+ TLVN +L HC +D+S
Sbjct: 81 IYFEDKDMLVVNKPEGMVVHPSAGHASSTLVNALLFHC----------------KDLS-- 122
Query: 116 EEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGV 175
I+G IRPGIVHR+DK TSGLL+VAK++H+H L++Q K T +R YI+L G
Sbjct: 123 -----GING-KIRPGIVHRIDKDTSGLLMVAKNDHAHESLAKQLKDKTSDREYIALVHGD 176
Query: 176 PSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLE 235
G IE PI R +R +MA + + A + ++VIE L G L+ +L+
Sbjct: 177 IVHQKGTIEAPIGRAKEDRQKMAVVR------DGKEARTHFEVIERLE--GYTLINCKLD 228
Query: 236 TGRTHQ 241
TGRTHQ
Sbjct: 229 TGRTHQ 234
>gi|147669825|ref|YP_001214643.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. BAV1]
gi|289433036|ref|YP_003462909.1| pseudouridine synthase [Dehalococcoides sp. GT]
gi|146270773|gb|ABQ17765.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
sp. BAV1]
gi|288946756|gb|ADC74453.1| pseudouridine synthase, RluA family [Dehalococcoides sp. GT]
Length = 300
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD + I P +AE+IPL+I+++D ++L++NKP + VHPAPG+ TL
Sbjct: 50 SLRLKTGDTITIEIPPETPSELKAENIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L + ED D +RPGIVHRLDK TSGLL+V
Sbjct: 110 VNGVL-------------ALEPEMEDFDD-----------PLRPGIVHRLDKDTSGLLLV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ + A+LS QFK T+ + Y++L G + G IE P+ RDP NR ++A +
Sbjct: 146 AKNRQALANLSAQFKERTVRKYYLALVKGELRPAEGFIEAPLGRDPQNRQKIAVV----- 200
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + YKV+ + G +L+E +LETGRTHQ
Sbjct: 201 -SDGRHARTGYKVLRYIQ--GYSLLEVKLETGRTHQ 233
>gi|421597794|ref|ZP_16041336.1| pseudouridine synthase-like protein [Bradyrhizobium sp. CCGE-LA001]
gi|404270096|gb|EJZ34234.1| pseudouridine synthase-like protein [Bradyrhizobium sp. CCGE-LA001]
Length = 326
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 125/224 (55%), Gaps = 37/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+++V GD + + E P + EDI LDIV+EDD+++V+NKP +VVHPA G+ TGTL
Sbjct: 50 AYHVASGDTITIDVPEASPAEPQGEDIALDIVFEDDDIIVINKPKGLVVHPAAGHETGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC S S G RPGIVHRLDK T+GL+VV
Sbjct: 110 VNALIAHCG-----------------------ASLSGIGGVRRPGIVHRLDKDTTGLMVV 146
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++ +HA LS QF H + R Y++ GVP + G ++ PI R P+ R +MA
Sbjct: 147 AKNDLAHASLSAQFADHGRTGEMRRGYMAFAWGVPHRHRGTVDAPIDRHPHAREKMAVRQ 206
Query: 202 GSNKHGQARHAASRYKVIEILAG----GGSALVEWRLETGRTHQ 241
G R A + ++++E AG G +AL+ LETGRTHQ
Sbjct: 207 GG------REAVTHWEILESFAGPDGKGVAALLACELETGRTHQ 244
>gi|229019095|ref|ZP_04175930.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1273]
gi|229025339|ref|ZP_04181757.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1272]
gi|423389798|ref|ZP_17367024.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-3]
gi|423418199|ref|ZP_17395288.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-1]
gi|228735924|gb|EEL86501.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1272]
gi|228742195|gb|EEL92360.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH1273]
gi|401106472|gb|EJQ14433.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-1]
gi|401641889|gb|EJS59606.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-3]
Length = 302
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VKG D + TI + + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKGNDEITVTIPDPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 203 -DENG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|291528977|emb|CBK94563.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
rectale M104/1]
Length = 312
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 34/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D+V+ TI + +DIPLDI+YEDD+VLVVNKP MVVHP+ G+ + TL
Sbjct: 52 NYRLKTDDIVDVTIPDAVQTPILPQDIPLDILYEDDDVLVVNKPKGMVVHPSAGHYSDTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG--ASIRPGIVHRLDKGTSGLL 143
VN I++HC S+SG IRPGIVHR+D T+G L
Sbjct: 112 VNAIMYHC-------------------------KDSLSGINGEIRPGIVHRIDMDTTGSL 146
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+V K++ SH +SEQ K H+ R+Y+ + G G IE I R+PN+R +MA +
Sbjct: 147 IVCKNDESHIKISEQIKHHSCNRIYVGIVCGNVKNDEGTIEGAIGRNPNDRKKMAI---N 203
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K+G+ A + YKV+E G ++++LETGRTHQ
Sbjct: 204 EKNGKP--AVTHYKVLERF--GDYTYMQFKLETGRTHQ 237
>gi|452205541|ref|YP_007485670.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi BTF08]
gi|452112597|gb|AGG08328.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides mccartyi BTF08]
Length = 300
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD + I P +AE+IPL+I+++D ++L++NKP + VHPAPG+ TL
Sbjct: 50 SLRLKTGDTITIEIPPETPSELKAENIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+L + ED D +RPGIVHRLDK TSGLL+V
Sbjct: 110 VNGVL-------------ALEPEMEDFDD-----------PLRPGIVHRLDKDTSGLLLV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ + A+LS QFK T+ + Y++L G + G IE P+ RDP NR ++A +
Sbjct: 146 AKNRQALANLSAQFKERTVRKYYLALVKGELRPAEGFIEAPLGRDPQNRQKIAVV----- 200
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + YKV+ + G +L+E +LETGRTHQ
Sbjct: 201 -SDGRHARTGYKVLRYIQ--GYSLLEVKLETGRTHQ 233
>gi|16801023|ref|NP_471291.1| hypothetical protein lin1957 [Listeria innocua Clip11262]
gi|422413387|ref|ZP_16490346.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL S4-378]
gi|16414458|emb|CAC97187.1| lin1957 [Listeria innocua Clip11262]
gi|313618258|gb|EFR90322.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL S4-378]
Length = 302
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIRYEAREPEELEILAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVV----- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++VIE L G L+ +L+TGRTHQ
Sbjct: 202 -RDGKEARTHFEVIERLP--GYTLINCKLDTGRTHQ 234
>gi|389573333|ref|ZP_10163408.1| pseudouridylate synthase [Bacillus sp. M 2-6]
gi|388427030|gb|EIL84840.1| pseudouridylate synthase [Bacillus sp. M 2-6]
Length = 304
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 125/220 (56%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
++ ++ V+ GD + I + + L EAE + LDI YED++VLVVNKP MVVHPAPG+
Sbjct: 48 QVKANYKVQAGDQIKVEIPDPEALDVEAESMDLDIYYEDEDVLVVNKPRGMVVHPAPGHV 107
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
TGTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSG
Sbjct: 108 TGTLVNGLMAHCN----------------DL-------SGINGV-MRPGIVHRIDKDTSG 143
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL+VAK++ +H L Q T+ R Y ++ G+ +G I+ PI RD +R M
Sbjct: 144 LLMVAKNDMAHESLVNQLVAKTVTRKYTAVVHGIIQHDTGTIDAPIGRDKKDRQSMTVTK 203
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A+ A + + V+E +VE RLETGRTHQ
Sbjct: 204 EN-----AKQAVTHFDVMERFK--DFTVVECRLETGRTHQ 236
>gi|67920300|ref|ZP_00513820.1| Pseudouridine synthase, RluD [Crocosphaera watsonii WH 8501]
gi|67857784|gb|EAM53023.1| Pseudouridine synthase, RluD [Crocosphaera watsonii WH 8501]
Length = 313
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 36/220 (16%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K GD + I E QPL + E IPLDI+YED+ ++++NK A++VVHPAPG+ TGTLV+
Sbjct: 53 LKIGDRLQVNIPEPQPLELQPEPIPLDILYEDEQLIIINKSANLVVHPAPGHETGTLVHA 112
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L+HCS LA G RPGIVHRLDK T+G +VVAK
Sbjct: 113 LLYHCS--NLAGI----------------------GGVQRPGIVHRLDKDTTGAIVVAKT 148
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGV-------PSQSSGRIEVPISRDPNNRIRMAAIP 201
+ +H +L Q K T +R Y+ + GV ++ G I +PI R P +R RMA +P
Sbjct: 149 DFAHQNLQFQIKNRTAKREYLGIIYGVLNNEEDENNRDKGMINLPIGRHPVDRKRMAVVP 208
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R A + +++IE L G +LV++ LETGRTHQ
Sbjct: 209 ---REKPGREAVTYWEIIERL--GNYSLVKFILETGRTHQ 243
>gi|238924093|ref|YP_002937609.1| pseudouridine synthase, RluA family [Eubacterium rectale ATCC
33656]
gi|238875768|gb|ACR75475.1| pseudouridine synthase, RluA family [Eubacterium rectale ATCC
33656]
gi|291524836|emb|CBK90423.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
rectale DSM 17629]
Length = 312
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 34/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D+V+ TI + +DIPLDI+YEDD+VLVVNKP MVVHP+ G+ + TL
Sbjct: 52 NYRLKTDDIVDVTIPDAVQTPILPQDIPLDILYEDDDVLVVNKPKGMVVHPSAGHYSDTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG--ASIRPGIVHRLDKGTSGLL 143
VN I++HC S+SG IRPGIVHR+D T+G L
Sbjct: 112 VNAIMYHC-------------------------KDSLSGINGEIRPGIVHRIDMDTTGSL 146
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+V K++ SH +SEQ K H+ R+Y+ + G G IE I R+PN+R +MA +
Sbjct: 147 IVCKNDESHIKISEQIKDHSCNRIYVGIVCGNVKDDEGTIEGAIGRNPNDRKKMAI---N 203
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K+G+ A + YKV+E G ++++LETGRTHQ
Sbjct: 204 EKNGKP--AVTHYKVLERF--GDYTYMQFKLETGRTHQ 237
>gi|239832765|ref|ZP_04681094.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
gi|239825032|gb|EEQ96600.1| pseudouridine synthase, RluA family [Ochrobactrum intermedium LMG
3301]
Length = 402
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 127/223 (56%), Gaps = 34/223 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
++ G + + E +P AE+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN
Sbjct: 122 KLREGMTIAVVLPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVN 181
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+++HC + S I G RPGIVHRLDK TSG++VVAK
Sbjct: 182 ALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 218
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++ SH HLSEQF H +ER Y++L G+ + G I+ + R +R + A + +
Sbjct: 219 NDLSHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGYIDAHLGRSHRDRTKQAVV--N 276
Query: 204 NKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 277 EERDDARHAITHYATVEKFGPREDATALASLVECRLETGRTHQ 319
>gi|444313109|ref|ZP_21148668.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
gi|443483547|gb|ELT46390.1| RluA family pseudouridine synthase [Ochrobactrum intermedium M86]
Length = 334
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 127/226 (56%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + + E +P AE+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 51 TKQKLREGMTIAVVLPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 110
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++HC + S I G RPGIVHRLDK TSG++V
Sbjct: 111 LVNALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 147
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ SH HLSEQF H +ER Y++L G+ + G I+ + R +R + A +
Sbjct: 148 VAKNDLSHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGYIDAHLGRSHRDRTKQAVV 207
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ + ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 208 --NEERDDARHAITHYATVEKFGPREDATALASLVECRLETGRTHQ 251
>gi|194015066|ref|ZP_03053683.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus pumilus ATCC 7061]
gi|194014092|gb|EDW23657.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus pumilus ATCC 7061]
Length = 304
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
++ ++ V+ GD + I E + L EAE + LDI YED +VLVVNKP MVVHPAPG+
Sbjct: 48 QVKANYKVQAGDQIKVEIPEPEVLDVEAEPMDLDIYYEDADVLVVNKPRGMVVHPAPGHV 107
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
+GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSG
Sbjct: 108 SGTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSG 143
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL+VAK++ +H L Q T+ R Y ++ G+ +G I+ PI RD +R M
Sbjct: 144 LLMVAKNDMAHESLVNQLVAKTVTRKYTAVVHGIIQHDTGTIDAPIGRDKKDRQSMTVTK 203
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
S A+ A + + VIE +VE RLETGRTHQ
Sbjct: 204 ES-----AKQAVTHFDVIERFQ--DFTVVECRLETGRTHQ 236
>gi|404498283|ref|YP_006722389.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
metallireducens GS-15]
gi|418068066|ref|ZP_12705386.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
gi|78195880|gb|ABB33647.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
metallireducens GS-15]
gi|373557678|gb|EHP84072.1| pseudouridine synthase, RluA family [Geobacter metallireducens
RCH3]
Length = 319
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S ++GG+ + + P EAE+IPL I++ED +++VVNK A MVVHP G GTL
Sbjct: 53 SLKLRGGERIVVAVPPPAPAVPEAEEIPLVILHEDSDLVVVNKSAGMVVHPGAGTPGGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC+ D+S G IRPGIVHR+DK T+G+LVV
Sbjct: 113 VNALLAHCT----------------DLSG--------IGGEIRPGIVHRIDKDTTGVLVV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH L+ QF+ HTI+R+Y++L G P +GRIE I R P +R+RM+ G K
Sbjct: 149 AKNDRSHEGLARQFREHTIKRIYLALVFGSPKTDTGRIEGAIGRHPTDRLRMS---GKAK 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HG +HA + +KV+ G L+ RLETGRTHQ
Sbjct: 206 HG--KHAVTHWKVLARYP--GMTLLRLRLETGRTHQ 237
>gi|227529323|ref|ZP_03959372.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
vaginalis ATCC 49540]
gi|227350751|gb|EEJ41042.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
vaginalis ATCC 49540]
Length = 305
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 124/221 (56%), Gaps = 33/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+K+ + + GD V + Q + E E+IPLDIVYEDD+V+VVNKP MVVHPAPG+
Sbjct: 47 EKVKPKYKLVVGDRVVVQPKKPQKIDLEPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGH 106
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TLVN +L+H L S+I+G RPGIVHR+DK TS
Sbjct: 107 PNHTLVNALLYHSPL------------------------STING-EFRPGIVHRIDKDTS 141
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL++AK++ +H L+ Q K T ER Y++L GV + G I+ P+ R +R + A +
Sbjct: 142 GLLMIAKNDLAHRSLAAQLKAKTNEREYVALVHGVIKEERGTIDAPLGRSKKDRKKQAVV 201
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + +KV+E+ LV RLETGRTHQ
Sbjct: 202 ------EDGRHAVTHFKVLELFQ--HYTLVSCRLETGRTHQ 234
>gi|336054036|ref|YP_004562323.1| pseudouridine synthase [Lactobacillus kefiranofaciens ZW3]
gi|333957413|gb|AEG40221.1| Pseudouridine synthase [Lactobacillus kefiranofaciens ZW3]
Length = 302
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ ++ GD + + ++PL E+IPLDI+YED++V+VVNKP MVVHPAPG+
Sbjct: 49 KVSYKIQAGDKIEINVPAVKPLDVVPENIPLDIIYEDNDVIVVNKPQGMVVHPAPGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H LA S E F RPGIVHR+DK TSGLL
Sbjct: 109 TLVNALLYHTK--DLAQS-PEGF---------------------RPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK+ + L +Q T +R+Y ++ G ++ +G I+ PI RDP NR +MA +
Sbjct: 145 MIAKNAKARESLEDQLAHKTNKRIYWAIVHGNFNEENGTIDAPIGRDPYNRKKMAVVENG 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV+E +L+E +LETGRTHQ
Sbjct: 205 KK------AITHFKVLEQFK--NYSLIECQLETGRTHQ 234
>gi|416391378|ref|ZP_11685677.1| Ribosomal large subunit pseudouridine synthase D [Crocosphaera
watsonii WH 0003]
gi|357263860|gb|EHJ12816.1| Ribosomal large subunit pseudouridine synthase D [Crocosphaera
watsonii WH 0003]
Length = 313
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 36/220 (16%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K GD + I E QPL + E IPLDI+YED+ ++++NK A++VVHPAPG+ TGTLV+
Sbjct: 53 LKIGDRLQVNIPEPQPLELQPEPIPLDILYEDEQLIIINKSANLVVHPAPGHETGTLVHA 112
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L+HCS LA G RPGIVHRLDK T+G +VVAK
Sbjct: 113 LLYHCS--NLAGI----------------------GGGQRPGIVHRLDKDTTGAIVVAKT 148
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGV-------PSQSSGRIEVPISRDPNNRIRMAAIP 201
+ +H +L Q K T +R Y+ + GV ++ G I +PI R P +R RMA +P
Sbjct: 149 DFAHQNLQFQIKNRTAKREYLGIIYGVLNNKEDENNRDKGMINLPIGRHPVDRKRMAVVP 208
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R A + +++IE L G +LV++ LETGRTHQ
Sbjct: 209 ---REKPGREAVTYWEIIERL--GYYSLVKFILETGRTHQ 243
>gi|404320463|ref|ZP_10968396.1| RluA family pseudouridine synthase [Ochrobactrum anthropi CTS-325]
Length = 334
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 127/226 (56%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + + E +P AE+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 51 TKQKLREGMTIAIVLPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 110
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++HC + S I G RPGIVHRLDK TSG++V
Sbjct: 111 LVNALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 147
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ SH HLSEQF H +ER Y++L G+ + G I+ + R +R + A +
Sbjct: 148 VAKNDRSHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGFIDAHLGRSHRDRTKQAVV 207
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ + ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 208 --NEEREDARHAITHYVTVEKFAPLEDATALASLVECRLETGRTHQ 251
>gi|423098750|ref|ZP_17086458.1| pseudouridine synthase, RluA family [Listeria innocua ATCC 33091]
gi|370794577|gb|EHN62340.1| pseudouridine synthase, RluA family [Listeria innocua ATCC 33091]
Length = 302
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIRYEAREPEELEILAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIIHQKGMIEAPIGRAKEDRQKMAVV----- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++VIE L G L+ +L+TGRTHQ
Sbjct: 202 -RDGKEARTHFEVIERLP--GYTLINCKLDTGRTHQ 234
>gi|421849802|ref|ZP_16282776.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus NBRC 101655]
gi|421852654|ref|ZP_16285340.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|371459419|dbj|GAB27979.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus NBRC 101655]
gi|371479158|dbj|GAB30543.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 334
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 116/212 (54%), Gaps = 29/212 (13%)
Query: 30 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 89
+ G V TI P + EDI ++YEDD+++V++KPA +VVHPAPGN TGTLVNG+
Sbjct: 69 RAGMEVVLTIPPAAPAVPQGEDISFTVLYEDDDLIVLDKPAGLVVHPAPGNETGTLVNGL 128
Query: 90 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDE 149
+ HC E I G RPGIVHRLDK TSG++V AK E
Sbjct: 129 IAHCG----------------------ESLKGIGGER-RPGIVHRLDKDTSGVMVAAKTE 165
Query: 150 HSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQA 209
+H LSE F I+R Y++ G+P+ + G E I RD +R RMA P K
Sbjct: 166 MAHQALSEDFAARRIDRAYLAFCWGLPNPAEGDFEGAIGRDKRDRKRMALTPKGGK---- 221
Query: 210 RHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+ ++ G G+ALV +L TGRTHQ
Sbjct: 222 -WALTHYRTLQAF-GTGAALVACKLATGRTHQ 251
>gi|153008568|ref|YP_001369783.1| RluA family pseudouridine synthase [Ochrobactrum anthropi ATCC
49188]
gi|151560456|gb|ABS13954.1| pseudouridine synthase, RluA family [Ochrobactrum anthropi ATCC
49188]
Length = 334
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 127/223 (56%), Gaps = 34/223 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
++ G + + E +P AE+IPLDI+YEDD+++V+NKPA +VVHP GN TGTLVN
Sbjct: 54 KLREGMTIAIVLPEPEPAEPIAENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGTLVN 113
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+++HC + S I G RPGIVHRLDK TSG++VVAK
Sbjct: 114 ALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMVVAK 150
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++ SH HLSEQF H +ER Y++L G+ + G I+ + R +R + A + +
Sbjct: 151 NDRSHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGFIDAHLGRSHRDRTKQAVV--N 208
Query: 204 NKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 209 EEREDARHAITHYVTVEKFAPLEDATALASLVECRLETGRTHQ 251
>gi|302874641|ref|YP_003843274.1| RluA family pseudouridine synthase [Clostridium cellulovorans 743B]
gi|307690747|ref|ZP_07633193.1| pseudouridine synthase, RluA family protein [Clostridium
cellulovorans 743B]
gi|302577498|gb|ADL51510.1| pseudouridine synthase, RluA family [Clostridium cellulovorans
743B]
Length = 313
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 32/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K D + I E Q + E+I L+I+YED++++V+NKP MVVHPA G TLVN
Sbjct: 54 LKMQDEITVIIPEPQEMNVVPENISLNILYEDEDLIVINKPQGMVVHPASGVYNNTLVNA 113
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L+HC +D+S I+G +RPGIVHR+DK TSG++VVAK+
Sbjct: 114 LLYHC----------------KDLS-------GING-KLRPGIVHRIDKDTSGVIVVAKN 149
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ SH L+ Q K H+++R YI+L G+ + G I P++RDP RI++A + G
Sbjct: 150 DKSHNFLAAQLKEHSMKREYIALVEGIIKEEEGTINQPLARDPKERIKIAVVKG------ 203
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + YKVIE + LV LETGRTHQ
Sbjct: 204 GREAITHYKVIERFK--ENTLVRCILETGRTHQ 234
>gi|403667693|ref|ZP_10932993.1| RNA pseudouridine synthase ylyB [Kurthia sp. JC8E]
Length = 307
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 123/209 (58%), Gaps = 31/209 (14%)
Query: 33 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 92
D++ T E +PL AED+ L+IVYED++VLVVNKP MVVHPAPG+ATGTLVNG++ H
Sbjct: 60 DVILVTPPEPEPLEILAEDLQLEIVYEDEDVLVVNKPKGMVVHPAPGHATGTLVNGLMFH 119
Query: 93 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSH 152
C+ D+ S I+G +RPGIVHR+DK TSGLL+VAK++ +H
Sbjct: 120 CN----------------DL-------SGINGV-VRPGIVHRIDKDTSGLLMVAKNDAAH 155
Query: 153 AHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHA 212
L +Q T+ R Y +L G G I+ PI R+ +R +MA + +HA
Sbjct: 156 ESLVQQLVDKTVTRRYTALVHGHIPHDKGTIDAPIGRNTKDRQKMAVV------DNGKHA 209
Query: 213 ASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + V + G L+E RLETGRTHQ
Sbjct: 210 VTHFYVTDRF-GVDYTLIECRLETGRTHQ 237
>gi|333978716|ref|YP_004516661.1| RluA family pseudouridine synthase [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333822197|gb|AEG14860.1| pseudouridine synthase, RluA family [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 305
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 121/216 (56%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK GD V I + L E+IPLDI YED +V+VVNKP MVVHPA GN +GTL
Sbjct: 53 SYRVKPGDEVVLKIPLPRELEVVPENIPLDIYYEDGDVVVVNKPRGMVVHPAEGNYSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC D+ S ++G +RPGIVHRLDK TSGL++V
Sbjct: 113 VNALLYHC----------------RDL-------SGVNGV-MRPGIVHRLDKDTSGLIMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K + R Y +L G + G ++ PI R P +R RMA +
Sbjct: 149 AKNDFTHLELARQLKDRRVTRRYTALAHGNFKEDRGTVDAPIGRHPRDRQRMAVVSRG-- 206
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + Y V E G L+E +LETGRTHQ
Sbjct: 207 ---GRHAVTHYMVKERF--GQYTLLELKLETGRTHQ 237
>gi|427718924|ref|YP_007066918.1| ribosomal large subunit pseudouridine synthase D [Calothrix sp. PCC
7507]
gi|427351360|gb|AFY34084.1| ribosomal large subunit pseudouridine synthase D [Calothrix sp. PCC
7507]
Length = 312
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 123/215 (57%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
NVK GD + I +QPL +AEDIPLDI+YEDD +L++NKPA +VVHPAPG+ GTLVN
Sbjct: 54 NVKVGDRIFVEIPAVQPLELQAEDIPLDILYEDDQLLILNKPAGLVVHPAPGHPGGTLVN 113
Query: 88 GILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
+L HC +LP + G RPGIVHRLDK T+G + +A
Sbjct: 114 ALLAHCPNLPGI-------------------------GGVQRPGIVHRLDKDTTGAIAIA 148
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + ++ L Q + T R Y+ + G SG I++PI R+P +R +MA +P
Sbjct: 149 KTDIAYQQLQAQLQAKTARREYLGVVYGTTKTESGTIDLPIGRNPQDRKKMAIVPIEEG- 207
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L G L+ ++LETGRTHQ
Sbjct: 208 --GRSAVTHWQIQERL--GNYTLIHFQLETGRTHQ 238
>gi|430750496|ref|YP_007213404.1| RluA family pseudouridine synthase [Thermobacillus composti KWC4]
gi|430734461|gb|AGA58406.1| pseudouridine synthase, RluA family [Thermobacillus composti KWC4]
Length = 317
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 124/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD+V T E + E IPL +VYED +V+VV+KP MVVHPA G+A+GTL
Sbjct: 67 NYRLEPGDVVAVTPPEPEDADIRPEPIPLHVVYEDGDVIVVDKPRGMVVHPAHGHASGTL 126
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC D+S I+G +RPGIVHR+DK TSGLL+
Sbjct: 127 VNALLHHC----------------RDLS-------GING-RLRPGIVHRIDKDTSGLLMA 162
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LSEQ K HT+ER YI+L G G I+ PI RDP++R + A G
Sbjct: 163 AKNDLAHVSLSEQLKAHTVERAYIALVHGNLPHDQGTIDAPIGRDPHDRKKFAVTAGGKP 222
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + + V+E G LV +LETGRTHQ
Sbjct: 223 ------SVTHFAVLERF--GDYTLVRLQLETGRTHQ 250
>gi|422416363|ref|ZP_16493320.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL J1-023]
gi|313623251|gb|EFR93499.1| ribosomal large subunit pseudouridine synthase D [Listeria innocua
FSL J1-023]
Length = 297
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD + E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 46 NYKVQVGDEIRYEAREPEELEILAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 106 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 142 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVR---- 197
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++VIE L G L+ +L+TGRTHQ
Sbjct: 198 --DGKEARTHFEVIERLP--GYTLINCKLDTGRTHQ 229
>gi|258543199|ref|YP_003188632.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-01]
gi|384043121|ref|YP_005481865.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-12]
gi|384051638|ref|YP_005478701.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-03]
gi|384054745|ref|YP_005487839.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-07]
gi|384057980|ref|YP_005490647.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-22]
gi|384060621|ref|YP_005499749.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-26]
gi|384063913|ref|YP_005484555.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-32]
gi|384119922|ref|YP_005502546.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256634277|dbj|BAI00253.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-01]
gi|256637337|dbj|BAI03306.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-03]
gi|256640389|dbj|BAI06351.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-07]
gi|256643446|dbj|BAI09401.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-22]
gi|256646501|dbj|BAI12449.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-26]
gi|256649554|dbj|BAI15495.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-32]
gi|256652540|dbj|BAI18474.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655598|dbj|BAI21525.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter pasteurianus IFO 3283-12]
Length = 337
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 116/212 (54%), Gaps = 29/212 (13%)
Query: 30 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 89
+ G V TI P + EDI ++YEDD+++V++KPA +VVHPAPGN TGTLVNG+
Sbjct: 72 RAGMEVVLTIPPAAPAVPQGEDISFTVLYEDDDLIVLDKPAGLVVHPAPGNETGTLVNGL 131
Query: 90 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDE 149
+ HC E I G RPGIVHRLDK TSG++V AK E
Sbjct: 132 IAHCG----------------------ESLKGIGGER-RPGIVHRLDKDTSGVMVAAKTE 168
Query: 150 HSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQA 209
+H LSE F I+R Y++ G+P+ + G E I RD +R RMA P K
Sbjct: 169 MAHQALSEDFAARRIDRAYLAFCWGLPNPAEGDFEGAIGRDKRDRKRMALTPKGGK---- 224
Query: 210 RHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+ ++ G G+ALV +L TGRTHQ
Sbjct: 225 -WALTHYRTLQAF-GTGAALVACKLATGRTHQ 254
>gi|56964104|ref|YP_175835.1| pseudouridine synthase [Bacillus clausii KSM-K16]
gi|56910347|dbj|BAD64874.1| pseudouridine synthase [Bacillus clausii KSM-K16]
Length = 302
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 127/227 (55%), Gaps = 31/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
A+ ++ ++ + V+ GD V T Q + EDIPLD+VYED +V+VVNKP +VV
Sbjct: 39 AVLVNEKEVKTNSKVQQGDKVTLTEPAAQEVELLGEDIPLDVVYEDSDVIVVNKPRGLVV 98
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+ +GTLVN +L HC +D+ S I+G IRPGIVHR
Sbjct: 99 HPAPGHESGTLVNALLFHC----------------KDL-------SGING-EIRPGIVHR 134
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGL++ AK + +H HL+ Q K T ER Y ++ GV + G I+ PI RDP +R
Sbjct: 135 IDKDTSGLIMAAKHDAAHEHLAAQLKAKTTERRYKAIVHGVIPHAKGTIDAPIGRDPKDR 194
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA H +R A + + + E + + LETGRTHQ
Sbjct: 195 QKMAVT-----HVNSRPAVTHFSLEETFK--QYSYISCELETGRTHQ 234
>gi|404367672|ref|ZP_10973034.1| RluA family pseudouridine synthase [Fusobacterium ulcerans ATCC
49185]
gi|313688762|gb|EFS25597.1| RluA family pseudouridine synthase [Fusobacterium ulcerans ATCC
49185]
Length = 313
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 133/221 (60%), Gaps = 32/221 (14%)
Query: 22 KLSVSHN-VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
K++ S N +KG + + I E + L E+IPL+I+YED +++V+NK MVVHPA GN
Sbjct: 52 KVTKSGNKLKGTETITVNIPEDEILDVIPENIPLNIIYEDKDIVVINKAPDMVVHPAHGN 111
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +L+H +D+S +I+G IRPGIVHRLDK TS
Sbjct: 112 YNGTLVNALLYHI----------------KDLS-------TINGV-IRPGIVHRLDKDTS 147
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
G++VVAK++ +H+ LS+ FK T+E+ YI + G+ SGRIE I RD +R +MA +
Sbjct: 148 GVIVVAKNDEAHSTLSDMFKEKTLEKTYICIAKGIFKDKSGRIETLIGRDSRDRKKMAVV 207
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ K +A S Y++++ +LV+ R+ETGRTHQ
Sbjct: 208 DINGK-----NAISNYEILD--EEKNFSLVKVRIETGRTHQ 241
>gi|423395807|ref|ZP_17373008.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-1]
gi|423406683|ref|ZP_17383832.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-3]
gi|401653549|gb|EJS71093.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-1]
gi|401659973|gb|EJS77456.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-3]
Length = 302
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VKG D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKGNDEITVTIPEPEALDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|157692226|ref|YP_001486688.1| pseudouridylate synthase [Bacillus pumilus SAFR-032]
gi|157680984|gb|ABV62128.1| pseudouridylate synthase [Bacillus pumilus SAFR-032]
Length = 304
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
++ ++ V+ GD + I E + L EAE + LDI YED +VLVVNKP MVVHPAPG+
Sbjct: 48 QVKANYKVQAGDQIKVEIPEPEALDVEAEAMDLDIYYEDADVLVVNKPRGMVVHPAPGHV 107
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
+GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSG
Sbjct: 108 SGTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSG 143
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL+VAK++ +H L Q T+ R Y ++ G+ +G I+ PI RD +R M
Sbjct: 144 LLMVAKNDMAHESLVNQLVAKTVTRKYTAVVHGIIQHDTGTIDAPIGRDKKDRQSMTVTK 203
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
S+K A + + VIE +VE RLETGRTHQ
Sbjct: 204 ESSK-----QAVTHFDVIERF--DDFTVVECRLETGRTHQ 236
>gi|365924511|ref|ZP_09447274.1| ribosomal large subunit pseudouridine synthase [Lactobacillus mali
KCTC 3596 = DSM 20444]
gi|420265320|ref|ZP_14767883.1| ribosomal large subunit pseudouridine synthase [Lactobacillus mali
KCTC 3596 = DSM 20444]
gi|394428211|gb|EJF00790.1| ribosomal large subunit pseudouridine synthase [Lactobacillus mali
KCTC 3596 = DSM 20444]
Length = 301
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 128/227 (56%), Gaps = 33/227 (14%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
A+ ++ ++ VK D + TI ++ + E+IPLDIVYED++VLVVNKP MVV
Sbjct: 38 AILVNSQPAKPNYKVKENDQIELTIPPVKETSIQPENIPLDIVYEDEDVLVVNKPQGMVV 97
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HP+PG+ TLVN +L H L S+I+G RPGIVHR
Sbjct: 98 HPSPGHPDKTLVNALLAHSPL------------------------STING-EFRPGIVHR 132
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+VAK++ +H L+ Q K T R YI+L GV + +G+I+ P+ R P +R
Sbjct: 133 IDKDTSGLLMVAKNDQAHRSLAAQLKAKTNIREYIALVHGVIKEDNGKIDAPLGRSPKDR 192
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + G R+A +R+ VI+ L++ LETGRTHQ
Sbjct: 193 KKQAVVSG------GRNAVTRFSVIKRYQ--NYTLIKCILETGRTHQ 231
>gi|384265127|ref|YP_005420834.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898123|ref|YP_006328419.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens Y2]
gi|380498480|emb|CCG49518.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172233|gb|AFJ61694.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens Y2]
Length = 304
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 128/227 (56%), Gaps = 33/227 (14%)
Query: 17 FLSMDKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+S++ SV N K GD VN TI E + L AE + LDI YED +VLVVNKP MVV
Sbjct: 41 LVSVNGKSVKANYKMQPGDQVNVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+ TGTLVNG++ HC+ D+ S I+G +RPGIVHR
Sbjct: 101 HPAPGHVTGTLVNGLMAHCN----------------DL-------SGINGV-MRPGIVHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+VAK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R
Sbjct: 137 IDKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGMISHDDGTIDAPIGRDKKDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
M S+K +A + + V+E LVE RLETGRTHQ
Sbjct: 197 QSMTVTRESSK-----NAVTHFHVLERFQ--DFTLVECRLETGRTHQ 236
>gi|302670833|ref|YP_003830793.1| pseudouridine synthase [Butyrivibrio proteoclasticus B316]
gi|302395306|gb|ADL34211.1| pseudouridine synthase RluA family [Butyrivibrio proteoclasticus
B316]
Length = 309
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 118/192 (61%), Gaps = 29/192 (15%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDA 109
+DIPLDI+YED++V+VVNKP MVVHPA G+ TLVN I++HC
Sbjct: 80 QDIPLDIIYEDNDVVVVNKPKDMVVHPAAGHYKDTLVNAIMYHC---------------- 123
Query: 110 EDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYI 169
++ S I+G +RPGIVHR+DK T+G +++ K++++H ++EQ K H+I RVY
Sbjct: 124 ------KDNLSGINGV-MRPGIVHRIDKDTTGSVIICKNDNAHQSIAEQLKEHSINRVYH 176
Query: 170 SLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSAL 229
++ GV + G + PI R N+R +MA +PG ++A++ Y+V++ G
Sbjct: 177 AICYGVIKEDEGDVTAPIGRSVNDRKKMAVVPG------GKYASTHYRVLKRFPEDGFTY 230
Query: 230 VEWRLETGRTHQ 241
+E +L+TGRTHQ
Sbjct: 231 IECKLQTGRTHQ 242
>gi|399516219|ref|ZP_10757830.1| Ribosomal large subunit pseudouridine synthase D [Leuconostoc
pseudomesenteroides 4882]
gi|398648947|emb|CCJ65857.1| Ribosomal large subunit pseudouridine synthase D [Leuconostoc
pseudomesenteroides 4882]
Length = 312
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 130/226 (57%), Gaps = 33/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ ++ S+ V GD+V T E + AE+IPLDIVYEDD++LVVNKP +VVH
Sbjct: 41 ILVNGKQVKRSYKVSSGDVVTITPPETKDTEILAENIPLDIVYEDDDLLVVNKPQGIVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ +GTLVN +++H L T+ + EF RPGIVHR+
Sbjct: 101 PAAGHTSGTLVNALMYHSPLSTI----------------NGEF---------RPGIVHRI 135
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
D+ TSGLL+VAK++ +H LS Q K H +R+YI+L G + +G I P++R +R
Sbjct: 136 DRDTSGLLMVAKNDVAHQALSAQLKAHKNQRIYIALVRGEFQEDTGTISAPLARHKVDRK 195
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A G R A + ++V++ G L++ RLETGRTHQ
Sbjct: 196 KQAVTEG------GREAITHFQVLKRFV--GYTLLQVRLETGRTHQ 233
>gi|315282847|ref|ZP_07871166.1| ribosomal large subunit pseudouridine synthase D [Listeria marthii
FSL S4-120]
gi|313613517|gb|EFR87342.1| ribosomal large subunit pseudouridine synthase D [Listeria marthii
FSL S4-120]
Length = 302
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD ++ E + L AEDIPLDI +ED ++LVVNKP MVVHP+ G+A+GTL
Sbjct: 51 NYKVQVGDEIHYEAREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPSAGHASGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC DD S I+G IRPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLFHC--------------------DD---LSGING-KIRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++H+H L++Q K T +R YI+L G G IE PI R +R +MA +
Sbjct: 147 AKNDHAHESLAKQLKDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVR---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E L G L+ +L+TGRTHQ
Sbjct: 203 --DGKEARTHFEVLERLP--GFTLINCKLDTGRTHQ 234
>gi|337265946|ref|YP_004610001.1| RluA family pseudouridine synthase [Mesorhizobium opportunistum
WSM2075]
gi|336026256|gb|AEH85907.1| pseudouridine synthase, RluA family [Mesorhizobium opportunistum
WSM2075]
Length = 334
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 124/219 (56%), Gaps = 35/219 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G+ V+ + E +P + E+I LD++YEDD ++V+NKPA +VVHP GN TGTLVN ++H
Sbjct: 61 GESVSVAMPEPEPAEPQGENIALDVLYEDDALIVINKPAGLVVHPGAGNWTGTLVNALIH 120
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC + S I G RPGIVHRLDK TSG++VVAK + +
Sbjct: 121 HCG----------------------DSLSGIGGVR-RPGIVHRLDKETSGVMVVAKTDRA 157
Query: 152 HAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
H LSE F H +ER Y++L G+P + +G ++ P+ R +R+R A +P
Sbjct: 158 HKALSEAFADHGLTGDLERAYLALVWGIPQRPTGTVDAPLGR-AADRVRRAVVPEGRD-- 214
Query: 208 QARHAASRYKVIEILAG-----GGSALVEWRLETGRTHQ 241
ARHA + + V E ++LVE RLETGRTHQ
Sbjct: 215 DARHAVTHFAVQERFGEKQQEFATASLVECRLETGRTHQ 253
>gi|357024379|ref|ZP_09086532.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
gi|355543733|gb|EHH12856.1| RluA family pseudouridine synthase [Mesorhizobium amorphae
CCNWGS0123]
Length = 341
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 35/225 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ GD+V+ + E +P + E I LDI+YED ++V++KPA +VVHP GN TGTL
Sbjct: 62 KRKLAAGDVVSVVMPEPEPATPQGEAIALDILYEDAELIVIDKPAGLVVHPGAGNWTGTL 121
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++HHC + S I G RPGIVHRLDK TSG++VV
Sbjct: 122 VNALIHHCG----------------------DSLSGIGGVK-RPGIVHRLDKETSGVMVV 158
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK + +H LSE F H ++R Y++L G+P + +G+++ P+ R +R+R A +P
Sbjct: 159 AKTDRAHKALSEAFADHGRTGDLQRAYLALVWGIPPRPTGKVDAPLGRA-ADRVRRAVVP 217
Query: 202 GSNKHGQARHAASRYKVIEILAG-----GGSALVEWRLETGRTHQ 241
ARHA + + V+E ++LVE RLETGRTHQ
Sbjct: 218 EGRD--DARHAVTHFTVVERFGEQQQEFATASLVECRLETGRTHQ 260
>gi|428216631|ref|YP_007101096.1| ribosomal large subunit pseudouridine synthase D [Pseudanabaena sp.
PCC 7367]
gi|427988413|gb|AFY68668.1| ribosomal large subunit pseudouridine synthase D [Pseudanabaena sp.
PCC 7367]
Length = 316
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 123/213 (57%), Gaps = 32/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK GD + I EL+ L E + I LDI+YED+++L +NKP MVVHPAPG++ GTLVN
Sbjct: 69 VKDGDYLTIEIPELERLTIEPQAIDLDILYEDEHLLAINKPVGMVVHPAPGHSEGTLVNA 128
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC + S I+G RPGIVHRLDK TSG +VVAK+
Sbjct: 129 LLAHC-----------------------QHLSGINGVQ-RPGIVHRLDKDTSGAIVVAKN 164
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L Q + T R Y+ L GVP+ SSG I PI+R +R +MA +
Sbjct: 165 DFAHHSLQAQIQAKTARRCYLGLVFGVPNASSGIINAPIARHQRDRKKMAVVE------T 218
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++++E L G +L+++ LETGRTHQ
Sbjct: 219 GRSAITHWRLLERL--GHFSLLQFDLETGRTHQ 249
>gi|306844672|ref|ZP_07477257.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
gi|306274844|gb|EFM56614.1| pseudouridine synthase, RluA family [Brucella inopinata BO1]
Length = 334
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 126/226 (55%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + + E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 51 TKQKLREGMNIAIVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 110
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++HC + S I G RPGIVHRLDK TSG++V
Sbjct: 111 LVNALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 147
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ +H HLSEQF H +ER Y++L G+ + G ++ + R +R + A +
Sbjct: 148 VAKNDRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQAVV 207
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 208 --REEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQ 251
>gi|114763109|ref|ZP_01442535.1| ribosomal large subunit pseudouridine synthase D [Pelagibaca
bermudensis HTCC2601]
gi|114544162|gb|EAU47171.1| ribosomal large subunit pseudouridine synthase D [Roseovarius sp.
HTCC2601]
Length = 343
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 124/233 (53%), Gaps = 48/233 (20%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + + + + EDIPLDIV+EDD+++VVNKPA MVVHPAPG TGTLVN
Sbjct: 58 KVAEGDEIVIAVPQAEESHIGPEDIPLDIVWEDDDLVVVNKPAGMVVHPAPGTPTGTLVN 117
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVV 145
+LHH F +SG RPGIVHR+DK TSGLLVV
Sbjct: 118 ALLHH-------------------------FGGKLSGVGGVARPGIVHRIDKDTSGLLVV 152
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGR----------------IEVPISR 189
AK + +H L+ QF+ H+ +R Y ++ GVP+Q R I+ ++R
Sbjct: 153 AKSDRAHHGLAAQFEAHSADRAYRAICYGVPNQGDPRLLGTRGVSVEPGGVLCIQSGLAR 212
Query: 190 DPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL-AGGGSALVEWRLETGRTHQ 241
+R R A GQ RHA +R +V+E A AL+E RLETGRTHQ
Sbjct: 213 HKTDRQRQAVF----FDGQGRHAVTRARVLESFGAPPAMALLECRLETGRTHQ 261
>gi|259503429|ref|ZP_05746331.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
antri DSM 16041]
gi|259168507|gb|EEW53002.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
antri DSM 16041]
Length = 303
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 117/210 (55%), Gaps = 33/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V Q + E IPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+
Sbjct: 57 GDQVVIKPEAPQKIDLVPEKIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLY 116
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC L S+I+G RPGIVHR+DK TSGLL+VAK++ +
Sbjct: 117 HCPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAKNDLA 151
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K T +R Y++L GV Q +G ++ PI R +R + A + RH
Sbjct: 152 HRSLAAQLKAKTNQREYVALVHGVIKQDAGTVDAPIGRSKKDRKKQAIV------SDGRH 205
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + +KV+E LV RLETGRTHQ
Sbjct: 206 AVTHFKVLERFR--HYTLVSCRLETGRTHQ 233
>gi|52141596|ref|YP_085233.1| pseudouridylate synthase [Bacillus cereus E33L]
gi|228987037|ref|ZP_04147162.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229157471|ref|ZP_04285548.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
ATCC 4342]
gi|51975065|gb|AAU16615.1| pseudouridylate synthase (pseudouridine synthase) [Bacillus cereus
E33L]
gi|228625921|gb|EEK82671.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
ATCC 4342]
gi|228772631|gb|EEM21072.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 302
Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKENDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|375362190|ref|YP_005130229.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421731785|ref|ZP_16170908.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451347084|ref|YP_007445715.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens IT-45]
gi|371568184|emb|CCF05034.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407073998|gb|EKE46988.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449850842|gb|AGF27834.1| ribosomal large subunit pseudouridine synthase D [Bacillus
amyloliquefaciens IT-45]
Length = 304
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 128/227 (56%), Gaps = 33/227 (14%)
Query: 17 FLSMDKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+S++ SV N K GD VN TI E + L AE + LDI YED +VLVVNKP MVV
Sbjct: 41 LVSVNGKSVKANYKMQPGDQVNVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+ TGTLVNG++ HC+ D+ S I+G +RPGIVHR
Sbjct: 101 HPAPGHVTGTLVNGLMAHCN----------------DL-------SGINGV-MRPGIVHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+VAK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R
Sbjct: 137 IDKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
M S+K +A + + V+E LVE RLETGRTHQ
Sbjct: 197 QSMTVTRESSK-----NAVTHFHVLERFQ--DFTLVECRLETGRTHQ 236
>gi|265984699|ref|ZP_06097434.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306840039|ref|ZP_07472826.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
gi|264663291|gb|EEZ33552.1| pseudouridine synthase [Brucella sp. 83/13]
gi|306404853|gb|EFM61145.1| pseudouridine synthase, RluA family [Brucella sp. NF 2653]
Length = 334
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 126/226 (55%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + + E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 51 TKQKLREGMNIAIVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 110
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++HC + S I G RPGIVHRLDK TSG++V
Sbjct: 111 LVNALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 147
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ +H HLSEQF H +ER Y++L G+ + G ++ + R +R + A +
Sbjct: 148 VAKNDRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQAVV 207
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 208 --REEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQ 251
>gi|302391670|ref|YP_003827490.1| ribosomal large subunit pseudouridine synthase D [Acetohalobium
arabaticum DSM 5501]
gi|302203747|gb|ADL12425.1| ribosomal large subunit pseudouridine synthase D [Acetohalobium
arabaticum DSM 5501]
Length = 308
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 126/216 (58%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ ++ GD V I + + + + E IPL+++ ED++++V+NK A +VVHPAPG+ GTL
Sbjct: 53 SYRLQVGDEVKLIIPQPEEVEIKPESIPLEVIAEDEDIVVINKQADLVVHPAPGHKQGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC + S I+G IRPGIVHRLDK TSG +V
Sbjct: 113 VNALLYHC-----------------------DNLSGING-EIRPGIVHRLDKDTSGAIVA 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H +L +QFK E++Y++L G + +I+ I RDP NR RMA ++K
Sbjct: 149 AKNDQAHRNLVKQFKERRTEKIYLALVEGNIKHNKAKIDAAIGRDPYNRKRMAVTKRNSK 208
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A +R++V+E G V+ +LETGRTHQ
Sbjct: 209 -----QAVTRFEVLERF--GNYTWVKLKLETGRTHQ 237
>gi|427427997|ref|ZP_18918039.1| Ribosomal large subunit pseudouridine synthase D [Caenispirillum
salinarum AK4]
gi|425882698|gb|EKV31377.1| Ribosomal large subunit pseudouridine synthase D [Caenispirillum
salinarum AK4]
Length = 352
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 119/216 (55%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S V+ G T+ +P E +DIPL +V+ED +++VV+KPA MVVHPA GNA GTL
Sbjct: 85 SRKVRAGQTAAVTVPPPEPAVPEPQDIPLSVVFEDAHLIVVDKPAGMVVHPAAGNADGTL 144
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC S S G RPGIVHR+DK TSGLLV
Sbjct: 145 VNALLHHCG-----------------------ASLSGIGGVRRPGIVHRIDKDTSGLLVA 181
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L+ F H IERVY ++ GVP G I I+R NR +MA + K
Sbjct: 182 AKTDAAHQGLAALFARHDIERVYTAVVWGVPMPRRGTITGNIARSTANRQKMAVVKSGGK 241
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+V+ LA G +ALV RLETGRTHQ
Sbjct: 242 -----PAVTHYQVVTPLA-GDTALVTCRLETGRTHQ 271
>gi|308173508|ref|YP_003920213.1| pseudouridylate synthase [Bacillus amyloliquefaciens DSM 7]
gi|384159472|ref|YP_005541545.1| pseudouridylate synthase [Bacillus amyloliquefaciens TA208]
gi|384164092|ref|YP_005545471.1| pseudouridylate synthase [Bacillus amyloliquefaciens LL3]
gi|384168520|ref|YP_005549898.1| pseudouridylate synthase [Bacillus amyloliquefaciens XH7]
gi|307606372|emb|CBI42743.1| pseudouridylate synthase [Bacillus amyloliquefaciens DSM 7]
gi|328553560|gb|AEB24052.1| pseudouridylate synthase [Bacillus amyloliquefaciens TA208]
gi|328911647|gb|AEB63243.1| pseudouridylate synthase [Bacillus amyloliquefaciens LL3]
gi|341827799|gb|AEK89050.1| putative pseudouridylate synthase [Bacillus amyloliquefaciens XH7]
Length = 304
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 129/227 (56%), Gaps = 33/227 (14%)
Query: 17 FLSMDKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+S++ SV N K GD VN TI E + L AE + LDI YED +VLVVNKP MVV
Sbjct: 41 LVSVNGKSVKANYKMQPGDQVNVTIPEPEELDVLAEPMDLDIYYEDQDVLVVNKPRGMVV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+ TGTLVNG++ HC+ D+ S I+G +RPGIVHR
Sbjct: 101 HPAPGHVTGTLVNGLMAHCN----------------DL-------SGINGV-MRPGIVHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+VAK++ +H L Q T+ R Y ++ GV S G I+ PI RD +R
Sbjct: 137 IDKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGVISHDDGTIDAPIGRDKKDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
M + G +++A + + V+E LVE RLETGRTHQ
Sbjct: 197 QSMTV----TREG-SKNAVTHFHVLERFQ--DFTLVECRLETGRTHQ 236
>gi|407769550|ref|ZP_11116925.1| pseudouridylate synthase, 23S RNA-specific [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407287472|gb|EKF12953.1| pseudouridylate synthase, 23S RNA-specific [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 333
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 119/220 (54%), Gaps = 30/220 (13%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
+S+ VK GD I AE I LDI+YEDD++LV+NKPA MVVHPA GN +G
Sbjct: 59 KMSYKVKSGDRFALEIPPAVAADPIAEKIALDILYEDDDLLVINKPAGMVVHPAAGNESG 118
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L HC + S I G RPGIVHRLDK TSG +
Sbjct: 119 TLVNALLAHCG----------------------DSLSGIGGVK-RPGIVHRLDKDTSGAM 155
Query: 144 VVAKDEHSHAHLSEQFK--LHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
VVAK++ +H LS F IER YI++ GVP Q G IE I R P NR +MA +
Sbjct: 156 VVAKNDATHRALSTLFSEDKENIERAYIAVVWGVPRQIEGVIEGNIGRSPRNRKKMAVLR 215
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A +RYKV+ ++LVE RL TGRTHQ
Sbjct: 216 NGGK-----PALTRYKVLAKRDDSLASLVECRLLTGRTHQ 250
>gi|148257971|ref|YP_001242556.1| ribosomal large subunit pseudouridine synthase D [Bradyrhizobium
sp. BTAi1]
gi|146410144|gb|ABQ38650.1| ribosomal large subunit pseudouridine synthase D [Bradyrhizobium
sp. BTAi1]
Length = 326
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 126/224 (56%), Gaps = 37/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+++V GD + + E P +AE IPL +VYEDD+++V++KPA +VVHPA G+ TGTL
Sbjct: 50 AYHVASGDTITIDVPEAAPPEPKAEAIPLHVVYEDDDIVVLDKPAGLVVHPAAGHETGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC S S G RPGIVHRLDK T+GL+VV
Sbjct: 110 VNALIAHCG-----------------------ASLSGIGGVKRPGIVHRLDKDTTGLMVV 146
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++H+HA LS QF H +ER Y++ + G+P + G I P+ R P+ R +MA P
Sbjct: 147 AKNDHAHASLSAQFADHGRTGAMERGYLAFSWGLPHRPHGTINAPLDRHPHARDKMAVRP 206
Query: 202 GSNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
+ R A + Y+V E G ++L+ LETGRTHQ
Sbjct: 207 ------RGREAITHYEVQESFVGRDGKPVASLIACHLETGRTHQ 244
>gi|84515394|ref|ZP_01002756.1| ribosomal large subunit pseudouridine synthase D [Loktanella
vestfoldensis SKA53]
gi|84510677|gb|EAQ07132.1| ribosomal large subunit pseudouridine synthase D [Loktanella
vestfoldensis SKA53]
Length = 349
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 122/206 (59%), Gaps = 35/206 (16%)
Query: 48 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 107
EA+DI LD+V+EDD+++V+NKPA MVVHPAPG A GTLVN ++HHC
Sbjct: 85 EAQDITLDVVFEDDDLIVINKPAGMVVHPAPGTADGTLVNALIHHCG------------- 131
Query: 108 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERV 167
S S G RPGIVHR+DK TSGLLVVAK + +H HL++QF HT+ER
Sbjct: 132 ----------DSLSGVGGLKRPGIVHRIDKDTSGLLVVAKSDRAHHHLADQFADHTVERR 181
Query: 168 YISLTSGVPSQSSGRIE--VPISRDPNNRIRMAAIPGSNKHGQARHA----ASRYKV--I 219
YI++ GVP + R+ S +P N +++ G ++ + R A A R+ V +
Sbjct: 182 YIAVCYGVPEANDPRLRGIKGTSFEPGNILKIQTQLGRHRTDRQRQAVSFTAGRHAVTRV 241
Query: 220 EILAGGG----SALVEWRLETGRTHQ 241
ILA G +ALVE LETGRTHQ
Sbjct: 242 RILAALGAMPVAALVECWLETGRTHQ 267
>gi|300173082|ref|YP_003772248.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
gasicomitatum LMG 18811]
gi|299887461|emb|CBL91429.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
gasicomitatum LMG 18811]
Length = 308
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 123/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD + E+ AEDIPLDI+YEDD++LVVNKP MVVHPA G+++GTL
Sbjct: 51 AYKVTTGDTITILQPEVITTEIIAEDIPLDIIYEDDDILVVNKPQGMVVHPAAGHSSGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L H L T+ + EF RPGIVHR+D+ TSGLL+V
Sbjct: 111 VNALLFHAPLSTI----------------NGEF---------RPGIVHRIDRDTSGLLMV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K H +R+Y +L G ++SG I PI+R +R + A G
Sbjct: 146 AKNDQAHQGLSAQLKAHKNDRIYYALVRGEFVENSGTINAPINRHKVDRKKQAVQEG--- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++VIE G L++ RLETGRTHQ
Sbjct: 203 ---GREAITHFEVIERYV--GYTLLKVRLETGRTHQ 233
>gi|268317176|ref|YP_003290895.1| RluA family pseudouridine synthase [Rhodothermus marinus DSM 4252]
gi|262334710|gb|ACY48507.1| pseudouridine synthase, RluA family [Rhodothermus marinus DSM 4252]
Length = 355
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD++ I P+ E IPLDIVYED ++VVNK A +VVHPA GN +GTL
Sbjct: 58 AYTVQPGDVITLRILRPPPVEIVPEPIPLDIVYEDPYLIVVNKQAGLVVHPARGNRSGTL 117
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASI---RPGIVHRLDKGTSGL 142
VN +L++ + ++ + ++I S+ + A + RPGIVHRLDK T+GL
Sbjct: 118 VNALLYYIGSGPVRFDEEDDLPEDDEIGLSM-VSTGPTEAKLEAPRPGIVHRLDKDTTGL 176
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
+VVAKD+ +H L+ QF+ TI R Y+++ GVP GRIE I RDP +R RMA +P
Sbjct: 177 IVVAKDDVTHTGLARQFEHRTIARTYLAIVWGVPDPPRGRIEAAIGRDPRDRQRMAVVPD 236
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + Y+V+E L +ALV ++LETGRTHQ
Sbjct: 237 D----RGKRAVTHYEVVEALP--AAALVRFKLETGRTHQ 269
>gi|167750498|ref|ZP_02422625.1| hypothetical protein EUBSIR_01474 [Eubacterium siraeum DSM 15702]
gi|167656424|gb|EDS00554.1| pseudouridine synthase, RluA family [Eubacterium siraeum DSM 15702]
Length = 303
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 124/216 (57%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ +K GD V + E QP E+IPLDIVYED ++LVVNKP MVVHPAPG+ +GTL
Sbjct: 49 NQKLKTGDTVTLDVPEAQPADILPENIPLDIVYEDSDLLVVNKPKGMVVHPAPGHYSGTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++HC + S I+G IRPGIVHR+D+ TSGLL+V
Sbjct: 109 VNALMYHCG----------------------DSLSGINGV-IRPGIVHRIDRDTSGLLIV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ K+H+ R Y+++ GV + G ++ PI R +R +M +
Sbjct: 146 AKNDTAHNILAEQIKVHSFTREYMAVVQGV-IKEDGTVDAPIGRHKTDRKKMCVTTEN-- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R A + Y V + + LV RLETGRTHQ
Sbjct: 203 ---SREAVTHYFVEQTYR--NNTLVRLRLETGRTHQ 233
>gi|152976253|ref|YP_001375770.1| RluA family pseudouridine synthase [Bacillus cytotoxicus NVH
391-98]
gi|152025005|gb|ABS22775.1| pseudouridine synthase, RluA family [Bacillus cytotoxicus NVH
391-98]
Length = 302
Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 128/216 (59%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + T+ E + L AED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKENDEITVTVPEPEELDIRAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+++HC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMYHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD +R MA ++
Sbjct: 149 AKNDMAHESLVNQLVEKTVTRRYQAIVHGVIPHDKGTIDAPIARDKKDRQSMAV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|104774018|ref|YP_618998.1| pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423099|emb|CAI97824.1| Pseudouridylate synthase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 303
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 132/226 (58%), Gaps = 33/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K VS+ V+ D++ + L+PL+ EAE+IPLDIVYED +V+VVNKP MVVH
Sbjct: 41 ILVNGKKSKVSYKVQKDDLIQVIVLPLEPLKLEAENIPLDIVYEDKDVIVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ + TLVN +L+H D++D E RPGIVHR+
Sbjct: 101 PAAGHPSHTLVNALLYHT----------------RDLADSPE--------GFRPGIVHRI 136
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK+ + L +Q + +R Y+++ G ++ G I+ PI R+P +R
Sbjct: 137 DKDTSGLLMVAKNAAARESLEKQLAAKSNKRQYLAIVHGNFAE-EGTIDAPIGRNPKDRK 195
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA + + + A + +KV+E G +LVE +LETGRTHQ
Sbjct: 196 QMAVVE------KGKSAVTHFKVLEQYQ--GYSLVECQLETGRTHQ 233
>gi|254304341|ref|ZP_04971699.1| pseudouridylate synthase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324533|gb|EDK89783.1| pseudouridylate synthase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 316
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 126/215 (58%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + I E + + EAE+IPLD+VYE+D+ +V+NK MVVHPA GN TGTLVN
Sbjct: 60 LKSGEKIEVLIPEEENIDIEAENIPLDVVYENDDFIVINKNYGMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + L+S N +IRPGI+HRLDK TSGL+++AK+
Sbjct: 120 LLYYTN--NLSSVN----------------------GNIRPGIIHRLDKDTSGLILIAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
+HA L+ F TI + Y+ + G S+ SGRIE I RD +R +MA + + K
Sbjct: 156 NFAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDIKDRKKMAVVKENGK- 214
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S Y+VIE + G +LVE +ETGRTHQ
Sbjct: 215 ----IAISNYRVIEQVE--GYSLVEVAIETGRTHQ 243
>gi|62290527|ref|YP_222320.1| ribosomal large subunit pseudouridine synthase D [Brucella abortus
bv. 1 str. 9-941]
gi|82700443|ref|YP_415017.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
biovar Abortus 2308]
gi|148558837|ref|YP_001259509.1| ribosomal large subunit pseudouridine synthase D [Brucella ovis
ATCC 25840]
gi|189024749|ref|YP_001935517.1| RluD subfamily ribosomal large subunit pseudouridine synthase
[Brucella abortus S19]
gi|260547225|ref|ZP_05822963.1| ribosomal large subunit pseudouridine synthase [Brucella abortus
NCTC 8038]
gi|260568746|ref|ZP_05839214.1| ribosomal large subunit pseudouridine synthase [Brucella suis bv. 4
str. 40]
gi|260755356|ref|ZP_05867704.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260758578|ref|ZP_05870926.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260762410|ref|ZP_05874747.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260884372|ref|ZP_05895986.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|261214623|ref|ZP_05928904.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|261315976|ref|ZP_05955173.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261325700|ref|ZP_05964897.1| pseudouridine synthase [Brucella neotomae 5K33]
gi|261750812|ref|ZP_05994521.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
gi|261754066|ref|ZP_05997775.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
gi|376272620|ref|YP_005151198.1| pseudouridine synthase [Brucella abortus A13334]
gi|376275741|ref|YP_005116180.1| pseudouridine synthase [Brucella canis HSK A52141]
gi|62196659|gb|AAX74959.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella abortus bv. 1 str. 9-941]
gi|82616544|emb|CAJ11622.1| Prenyl group binding site (CAAX box):RNA-binding S4:Pseudouridine
synthase:Pseudouridine synthase, Rlu:Pseudouridine
synthase [Brucella melitensis biovar Abortus 2308]
gi|148370094|gb|ABQ60073.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella ovis ATCC 25840]
gi|189020321|gb|ACD73043.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella abortus S19]
gi|260095590|gb|EEW79468.1| ribosomal large subunit pseudouridine synthase [Brucella abortus
NCTC 8038]
gi|260154130|gb|EEW89212.1| ribosomal large subunit pseudouridine synthase [Brucella suis bv. 4
str. 40]
gi|260668896|gb|EEX55836.1| pseudouridine synthase [Brucella abortus bv. 4 str. 292]
gi|260672836|gb|EEX59657.1| pseudouridine synthase [Brucella abortus bv. 2 str. 86/8/59]
gi|260675464|gb|EEX62285.1| pseudouridine synthase [Brucella abortus bv. 6 str. 870]
gi|260873900|gb|EEX80969.1| pseudouridine synthase [Brucella abortus bv. 9 str. C68]
gi|260916230|gb|EEX83091.1| pseudouridine synthase [Brucella abortus bv. 3 str. Tulya]
gi|261301680|gb|EEY05177.1| pseudouridine synthase [Brucella neotomae 5K33]
gi|261305002|gb|EEY08499.1| pseudouridine synthase [Brucella pinnipedialis M163/99/10]
gi|261740565|gb|EEY28491.1| pseudouridine synthase [Brucella suis bv. 5 str. 513]
gi|261743819|gb|EEY31745.1| pseudouridine synthase [Brucella suis bv. 3 str. 686]
gi|363400226|gb|AEW17196.1| pseudouridine synthase [Brucella abortus A13334]
gi|363404308|gb|AEW14603.1| pseudouridine synthase [Brucella canis HSK A52141]
Length = 334
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 126/226 (55%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + + E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 51 TKQKLREGMNIAIVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 110
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++HC + S I G RPGIVHRLDK TSG++V
Sbjct: 111 LVNALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 147
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ +H HLSEQF H +ER Y++L G+ + G ++ + R +R + A +
Sbjct: 148 VAKNDRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQAVV 207
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 208 --HEEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQ 251
>gi|374296459|ref|YP_005046650.1| RluA family pseudouridine synthase [Clostridium clariflavum DSM
19732]
gi|359825953|gb|AEV68726.1| pseudouridine synthase, RluA family [Clostridium clariflavum DSM
19732]
Length = 311
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 127/216 (58%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + I E + L EDI + I+YED++++VV+KP MVVHPA GN +GTL
Sbjct: 58 NYKVRMKDDITVQIPEPEVLDIVPEDIDVPILYEDEHIIVVDKPKGMVVHPAAGNYSGTL 117
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC + SSI+G IRPGIVHR+DK TSG+LVV
Sbjct: 118 VNALMKHCG----------------------DNLSSINGV-IRPGIVHRIDKDTSGVLVV 154
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK +H LS K H I RVYI+L G+ + +G+I+ PI R P +R +MA + K
Sbjct: 155 AKSNEAHEKLSMMLKEHDINRVYIALVHGIIREEAGKIDAPIGRHPVDRKKMAV---NTK 211
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G R A + +KV+E + ++E +LETGRTHQ
Sbjct: 212 NG--RRAVTHFKVLERFK--DATMLEVKLETGRTHQ 243
>gi|289547904|ref|YP_003472892.1| pseudouridine synthase [Thermocrinis albus DSM 14484]
gi|289181521|gb|ADC88765.1| pseudouridine synthase, RluA family [Thermocrinis albus DSM 14484]
Length = 324
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 124/217 (57%), Gaps = 32/217 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S VKGG++V + +++PL AEDIPL+I+YEDD++ VV KP +VVHP+PG +GTL
Sbjct: 59 SRKVKGGEVVVLCVPKVEPLSLPAEDIPLEILYEDDDLAVVVKPCGLVVHPSPGYTSGTL 118
Query: 86 VNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
VN +L LPT+ G RPGIVHRLD+ T G++V
Sbjct: 119 VNALLFRWRDLPTV-------------------------GEWYRPGIVHRLDRNTMGVMV 153
Query: 145 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
VAK E +H L+EQF+ + +VY +L G+ + G + +P++RDP +R R S
Sbjct: 154 VAKRELAHRRLAEQFEKRKVLKVYRALVKGLVERDEGTLSMPLARDPRHRKRFTV---SE 210
Query: 205 KHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K R A + YKV++ +L+E R+ TGRTHQ
Sbjct: 211 K---GRDAITHYKVLKRYRSLSVSLLEIRIYTGRTHQ 244
>gi|52430462|ref|YP_089634.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
1330]
gi|161619586|ref|YP_001593473.1| RluA family pseudouridine synthase [Brucella canis ATCC 23365]
gi|163845235|ref|YP_001622890.1| RluA family pseudouridine synthase [Brucella suis ATCC 23445]
gi|237816033|ref|ZP_04595029.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
gi|256370063|ref|YP_003107574.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella microti CCM 4915]
gi|294850907|ref|ZP_06791583.1| ribosomal large subunit pseudouridine synthase D [Brucella sp. NVSL
07-0026]
gi|297248929|ref|ZP_06932637.1| ribosomal large subunit pseudouridine synthase D [Brucella abortus
bv. 5 str. B3196]
gi|376281305|ref|YP_005155311.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
VBI22]
gi|384225297|ref|YP_005616461.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
1330]
gi|423169261|ref|ZP_17155962.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|423172590|ref|ZP_17159263.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|423175726|ref|ZP_17162394.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|423178716|ref|ZP_17165359.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|423181848|ref|ZP_17168487.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|423185151|ref|ZP_17171786.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|423188305|ref|ZP_17174917.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
gi|423191444|ref|ZP_17178051.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
gi|47524301|gb|AAT34906.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella suis 1330]
gi|161336397|gb|ABX62702.1| pseudouridine synthase, RluA family [Brucella canis ATCC 23365]
gi|163675958|gb|ABY40068.1| pseudouridine synthase, RluA family [Brucella suis ATCC 23445]
gi|237788696|gb|EEP62908.1| pseudouridine synthase, RluA family [Brucella abortus str. 2308 A]
gi|256000226|gb|ACU48625.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Brucella microti CCM 4915]
gi|294821550|gb|EFG38546.1| ribosomal large subunit pseudouridine synthase D [Brucella sp. NVSL
07-0026]
gi|297174062|gb|EFH33419.1| ribosomal large subunit pseudouridine synthase D [Brucella abortus
bv. 5 str. B3196]
gi|343383477|gb|AEM18969.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
1330]
gi|358258904|gb|AEU06639.1| ribosomal large subunit pseudouridine synthase D [Brucella suis
VBI22]
gi|374535160|gb|EHR06687.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI486]
gi|374535353|gb|EHR06879.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI474]
gi|374535447|gb|EHR06969.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI435a]
gi|374544603|gb|EHR16072.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI488]
gi|374544770|gb|EHR16235.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI010]
gi|374545128|gb|EHR16592.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI016]
gi|374552956|gb|EHR24378.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI021]
gi|374553149|gb|EHR24570.1| RluA family pseudouridine synthase [Brucella abortus bv. 1 str.
NI259]
Length = 347
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 126/226 (55%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + + E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 64 TKQKLREGMNIAIVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 123
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++HC + S I G RPGIVHRLDK TSG++V
Sbjct: 124 LVNALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 160
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ +H HLSEQF H +ER Y++L G+ + G ++ + R +R + A +
Sbjct: 161 VAKNDRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQAVV 220
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 221 --HEEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQ 264
>gi|284048842|ref|YP_003399181.1| RluA family pseudouridine synthase [Acidaminococcus fermentans DSM
20731]
gi|283953063|gb|ADB47866.1| pseudouridine synthase, RluA family [Acidaminococcus fermentans DSM
20731]
Length = 305
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 120/214 (56%), Gaps = 31/214 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
VK GD+ + L A E+IPLDI+YED +V+VVNKP MVVHPA GN GTLVN
Sbjct: 52 KVKEGDVFQVQVLPPVDLEARPENIPLDILYEDQDVIVVNKPRGMVVHPAAGNPDGTLVN 111
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L+HC D+ S I+G IRPGIVHRLDK TSG+++ AK
Sbjct: 112 ALLYHC----------------RDL-------SGINGV-IRPGIVHRLDKDTSGVMICAK 147
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
++ +H L+EQ + +R Y+++ G G IE + RDP +R +MA +P
Sbjct: 148 NDRAHLSLAEQIQKKEAKRTYLAIVRGNIKDDRGHIETQLDRDPRDRKKMAVVPSG---- 203
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R AA+ Y+V+E G +V RL TGRTHQ
Sbjct: 204 -GRWAATDYEVLERY--GKFTVVRCRLLTGRTHQ 234
>gi|85816530|gb|EAQ37717.1| pseudouridine synthase, RluA family [Dokdonia donghaensis MED134]
Length = 347
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 123/219 (56%), Gaps = 33/219 (15%)
Query: 26 SHNVKGGDMVNCTISELQP--LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK GD+V E P EDIPLDI+YEDD++LVVNKPA MVVHP GN +G
Sbjct: 68 NYKVKAGDVVRAMF-EHPPHEFLLTPEDIPLDIIYEDDDLLVVNKPAGMVVHPGHGNYSG 126
Query: 84 TLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TL+N ++HH +LP + +S RPG+VHR+DK TSGL
Sbjct: 127 TLINALIHHIDNLP--------------------------NNSSERPGLVHRIDKDTSGL 160
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK EH+ HLS+QF T ER Y+++ G G IE I R P NR++
Sbjct: 161 LVVAKTEHAMTHLSKQFFNKTTEREYVAIVWGNVVDDEGTIEGNIGRHPKNRLQNTVF-K 219
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ Q + A + YKV+E L G V +LETGRTHQ
Sbjct: 220 DDEEEQGKPAVTHYKVLERL--GYVTQVACKLETGRTHQ 256
>gi|52080148|ref|YP_078939.1| pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646073|ref|ZP_08000303.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|404489036|ref|YP_006713142.1| RNA-pseudouridine synthase YlyB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423682090|ref|ZP_17656929.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
gi|52003359|gb|AAU23301.1| Pseudouridine synthase [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52348027|gb|AAU40661.1| putative RNA-pseudouridine synthase YlyB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|317391823|gb|EFV72620.1| pseudouridine synthase [Bacillus sp. BT1B_CT2]
gi|383438864|gb|EID46639.1| pseudouridine synthetase [Bacillus licheniformis WX-02]
Length = 304
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 127/226 (56%), Gaps = 31/226 (13%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ + + ++ V+ GD V+ + E +PL AE + LDI YED +VLVVNKP MVVH
Sbjct: 42 VLVNGNAVKANYKVQEGDAVSVQVPEPEPLDVTAEPMDLDIYYEDQDVLVVNKPRGMVVH 101
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPG+ TGTLVNG++ HC DD S I+G +RPGIVHR+
Sbjct: 102 PAPGHLTGTLVNGLMAHC--------------------DD---LSGINGV-MRPGIVHRI 137
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK++ +H L Q T+ R Y +L GV G I+ PI RD +R
Sbjct: 138 DKDTSGLLMVAKNDMAHESLVNQLVNKTVTRKYTALVHGVIPHDHGTIDAPIGRDKKDRQ 197
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
M + K HA + ++VIE +VE +LETGRTHQ
Sbjct: 198 SMTVTRENGK-----HAVTHFEVIERF--DDFTVVECQLETGRTHQ 236
>gi|126738738|ref|ZP_01754434.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
SK209-2-6]
gi|126719919|gb|EBA16626.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
SK209-2-6]
Length = 344
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 125/222 (56%), Gaps = 35/222 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G ++ T+ E + EDIPL+++YEDD+++V+NKPA MVVHPAPG +GTLVN +LH
Sbjct: 63 GAQISITVEEAEDSHIGPEDIPLEVIYEDDDLIVINKPAGMVVHPAPGTPSGTLVNALLH 122
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC E S + G RPGIVHR+DK TSGLLVVAK + +
Sbjct: 123 HCG----------------------EKLSGVGGVK-RPGIVHRIDKETSGLLVVAKTDAA 159
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMAAIPGSNKHGQ- 208
H L+ QF+ HT+ER Y ++ GVP + R+ S + N +++ +KH +
Sbjct: 160 HQGLAAQFEKHTVERYYRAVCYGVPDGNDPRLRGVKGASFESGNILKLTTQLARHKHDRQ 219
Query: 209 --------ARHAASRYKVIEILAG-GGSALVEWRLETGRTHQ 241
RHA +R +++E G +AL+E LETGRTHQ
Sbjct: 220 RQAVLFQGGRHAVTRARIVEPFGNPGTAALIECWLETGRTHQ 261
>gi|160880488|ref|YP_001559456.1| RluA family pseudouridine synthase [Clostridium phytofermentans
ISDg]
gi|160429154|gb|ABX42717.1| pseudouridine synthase, RluA family [Clostridium phytofermentans
ISDg]
Length = 313
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 33/224 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ +K GD++ + + L AE+IPLDI+YED++++V+NKP +VVHPA G+ +
Sbjct: 50 IKANYRLKEGDILTYEVPQPVSLEIAAENIPLDILYEDEDIIVINKPKGLVVHPAAGHYS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC ++ S I+G +RPGIVHR+D T+G+
Sbjct: 110 GTLVNALLYHC----------------------KDRLSGINGV-MRPGIVHRIDMNTTGV 146
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVV K++ SH ++EQ K+H+I R Y +L Q+ G ++ PI R P +R +MA
Sbjct: 147 LVVCKNDKSHQSIAEQLKVHSITRKYEALVYNSFKQTEGTVDAPIGRHPVDRKKMAI--- 203
Query: 203 SNKHGQARHAASRYKVIEILAGG-----GSALVEWRLETGRTHQ 241
H ++A + Y+V+E G G A +E L+TGRTHQ
Sbjct: 204 --NHKNGKNAVTNYRVLENFNLGYVHNQGYAHIECTLKTGRTHQ 245
>gi|299821727|ref|ZP_07053615.1| ribosomal large subunit pseudouridine synthase [Listeria grayi DSM
20601]
gi|299817392|gb|EFI84628.1| ribosomal large subunit pseudouridine synthase [Listeria grayi DSM
20601]
Length = 302
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 123/210 (58%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD+V + + EAEDIPLDI YED+++LVVNKP MVVHP+ G+ TGTLVN +L+
Sbjct: 57 GDIVEMEERAPEVIEIEAEDIPLDIYYEDEDLLVVNKPEGMVVHPSAGHYTGTLVNALLY 116
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC +D+ S I+G IRPGIVHR+DK TSGLL+VAK++ +
Sbjct: 117 HC----------------KDL-------SGING-KIRPGIVHRIDKDTSGLLMVAKNDAA 152
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K T R Y++L G + G IE PI R ++R +MA + G +
Sbjct: 153 HESLASQLKAKTSHREYVALVHGDIAHQKGTIEAPIGRAKDDRQKMAVV------GDGKE 206
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + ++V+E G L+ +L+TGRTHQ
Sbjct: 207 ARTHFEVLERF--GDFTLITCQLDTGRTHQ 234
>gi|65321221|ref|ZP_00394180.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Bacillus
anthracis str. A2012]
gi|229600532|ref|YP_002868128.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|270000606|ref|YP_003329045.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. Ames]
gi|291612221|ref|YP_003541035.1| ribosomal large subunit pseudouridine synthase [Bacillus anthracis
str. 'Ames Ancestor']
gi|224552855|gb|ACN55066.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. 'Ames Ancestor']
gi|229264940|gb|ACQ46577.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0248]
gi|269850243|gb|ACZ49983.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Ames]
Length = 302
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVRENDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRSMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|422340105|ref|ZP_16421060.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. polymorphum F0401]
gi|355370350|gb|EHG17735.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. polymorphum F0401]
Length = 316
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 125/215 (58%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + I E + + EAE+IPLD+VYE+D+ +V+NK MVVHPA GN TGTLVN
Sbjct: 60 LKSGEKIEVLIPEEENIDIEAENIPLDVVYENDDFIVINKNYGMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + L+S N +IRPGI+HRLDK TSGL+++AK+
Sbjct: 120 LLYYTN--NLSSVN----------------------GNIRPGIIHRLDKDTSGLILIAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
HA L+ F TI + Y+ + G S+ SGRIE I RD +R +MA + +
Sbjct: 156 NFVHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDIKDRKKMAVVKEN--- 212
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A S YKV+E + G +LVE +ETGRTHQ
Sbjct: 213 --GKIAISNYKVVEQVE--GYSLVEVAIETGRTHQ 243
>gi|260893452|ref|YP_003239549.1| RluA family pseudouridine synthase [Ammonifex degensii KC4]
gi|260865593|gb|ACX52699.1| pseudouridine synthase, RluA family [Ammonifex degensii KC4]
Length = 331
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 122/222 (54%), Gaps = 36/222 (16%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K+ S+ VK G+ + + + L E E IPL+I+YED+++LVVNKP MVVHP G+
Sbjct: 49 KVKPSYKVKPGEEILVFLPPAETLEVEPEPIPLEIIYEDEDLLVVNKPRGMVVHPGAGHK 108
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGT 139
GTLVN +L+HC S+SG + +RPGIVHRLDK T
Sbjct: 109 RGTLVNALLYHC--------------------------RSLSGINGVLRPGIVHRLDKDT 142
Query: 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAA 199
SGLL+VAK++ +H LS Q K + + Y +L G + GRIE PI R P R +MA
Sbjct: 143 SGLLMVAKNDAAHLSLSAQLKERRVLKEYWALVYGEVKPAQGRIEAPIGRHPRYRQKMAV 202
Query: 200 IPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ G R A + Y+V+E G L+ R ETGRTHQ
Sbjct: 203 VAG------GRPAVTHYEVVEYFP--GYTLLRVRPETGRTHQ 236
>gi|422296049|gb|EKU23348.1| pseudouridine synthase [Nannochloropsis gaditana CCMP526]
Length = 311
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 123/225 (54%), Gaps = 34/225 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S VK G + + E +P AEDIPLDI++EDD+++V+NK A M VHPA GN TGTL
Sbjct: 33 SAKVKEGALYALKVPEPEPATPRAEDIPLDILFEDDDLIVINKAAGMTVHPAAGNWTGTL 92
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC+ S S G RPGIVHRLDK TSG++VV
Sbjct: 93 VNALLHHCA-----------------------GSLSGIGGVQRPGIVHRLDKDTSGVMVV 129
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L +F H +ER Y++ G P + R+E + R +R + A I +
Sbjct: 130 AKSDRAHQGLGAKFAKHDVERAYLACVRGAPKPRADRLETRLGRSSYDRKKFAVI--DDP 187
Query: 206 HGQA-RHAASRYKVIEIL---AGGG-----SALVEWRLETGRTHQ 241
H A + A + Y+ ++ AG ++LVE RLETGRTHQ
Sbjct: 188 HSTAGKIAVTNYETLKTFGQEAGKSVGTPLASLVECRLETGRTHQ 232
>gi|291530266|emb|CBK95851.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
siraeum 70/3]
Length = 304
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 124/216 (57%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ +K GD V + E QP E+IPLDIVYED ++LVVNKP MVVHPAPG+ +GTL
Sbjct: 50 NQKLKTGDTVTLDVPEAQPADILPENIPLDIVYEDSDLLVVNKPKGMVVHPAPGHYSGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++HC + S I+G IRPGIVHR+D+ TSGLL+V
Sbjct: 110 VNALMYHCG----------------------DSLSGINGV-IRPGIVHRIDRDTSGLLIV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ K+H+ R Y+++ GV + G ++ PI R +R +M +
Sbjct: 147 AKNDTAHNILAEQIKVHSFTREYMAVVQGV-IKEDGTVDAPIGRHKTDRKKMCVTTEN-- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R A + Y V + + LV RLETGRTHQ
Sbjct: 204 ---SREAITHYFVEQTYR--NNTLVRLRLETGRTHQ 234
>gi|254757932|ref|ZP_05209959.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Australia 94]
Length = 249
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVRENDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|404253882|ref|ZP_10957850.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
PAMC 26621]
Length = 315
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G + + + P EA+DI L +V+ED++++V++K A +VVHPA GN GTLVN +LH
Sbjct: 63 GGLYRIIVPDPTPAHNEAQDIALTVVFEDEHLIVIDKQAGLVVHPAAGNLDGTLVNALLH 122
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC S S G RPGIVHR+DK TSGL+V AK + +
Sbjct: 123 HCG-----------------------GSLSGIGGVARPGIVHRIDKDTSGLMVAAKTDRA 159
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L++QF H+I+R Y ++ SG P+ +G ++ P++R P NR ++A + G +
Sbjct: 160 HVGLAKQFAAHSIDRRYKAIVSGRPAPPAGSVDAPLARSPQNRKKIAIVQGGKR------ 213
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + IE L +ALVE RLETGRTHQ
Sbjct: 214 AVTHFSTIERLR--EAALVECRLETGRTHQ 241
>gi|395493555|ref|ZP_10425134.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas sp.
PAMC 26617]
Length = 315
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G + + + P EA+DI L +V+ED++++V++K A +VVHPA GN GTLVN +LH
Sbjct: 63 GGLYRIIVPDPTPAHNEAQDIALTVVFEDEHLIVIDKQAGLVVHPAAGNLDGTLVNALLH 122
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC S S G RPGIVHR+DK TSGL+V AK + +
Sbjct: 123 HCG-----------------------GSLSGIGGVARPGIVHRIDKDTSGLMVAAKTDRA 159
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L++QF H+I+R Y ++ SG P+ +G ++ P++R P NR ++A + G +
Sbjct: 160 HVGLAKQFAAHSIDRRYKAIVSGRPAPPAGSVDAPLARSPQNRKKIAIVQGGKR------ 213
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + IE L +ALVE RLETGRTHQ
Sbjct: 214 AVTHFSTIERLR--EAALVECRLETGRTHQ 241
>gi|335429378|ref|ZP_08556276.1| hypothetical protein HLPCO_10383 [Haloplasma contractile SSD-17B]
gi|334889388|gb|EGM27673.1| hypothetical protein HLPCO_10383 [Haloplasma contractile SSD-17B]
Length = 299
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 130/218 (59%), Gaps = 36/218 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
+++VK GD++ TI E P E E+IP+DI ++D +V+V+NK + MVVHP+ G+ TG
Sbjct: 49 NYHVKWGDII--TIYEKDPEITELVPENIPIDIHFQDKDVIVINKASGMVVHPSQGHYTG 106
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN L+HC+ S I+G +RPG+VHR+DK T+GLL
Sbjct: 107 TLVNAALYHCN-----------------------HLSGING-ELRPGVVHRIDKDTTGLL 142
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
V+AK++H+H L++QFK T R Y +L G + + G I+ PI RDP +R +MA + G
Sbjct: 143 VMAKNDHAHNFLAKQFKDKTTTREYCALVYGTIAHNKGTIDAPIGRDPKDRKKMAVVAG- 201
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+E L G L++ LETGRTHQ
Sbjct: 202 -----GRSAVTHFEVVERL--GDYTLIKCVLETGRTHQ 232
>gi|229174558|ref|ZP_04302089.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
MM3]
gi|423401265|ref|ZP_17378438.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-2]
gi|423457923|ref|ZP_17434720.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X2-1]
gi|423478031|ref|ZP_17454746.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-1]
gi|228608927|gb|EEK66218.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
MM3]
gi|401148307|gb|EJQ55800.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X2-1]
gi|401654255|gb|EJS71798.1| RluA family pseudouridine synthase [Bacillus cereus BAG2X1-2]
gi|402428193|gb|EJV60290.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-1]
Length = 302
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI + + L +AED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKENDEITVTIPDPEELDIQAEDMGLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI RD R M
Sbjct: 146 LMVAKNDVAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 203 -DENG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|257058664|ref|YP_003136552.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 8802]
gi|256588830|gb|ACU99716.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 8802]
Length = 318
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 125/222 (56%), Gaps = 32/222 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L+ V GD + + +PL + E IPLDI+YEDD+++++NK A +VVHPAPG+ T
Sbjct: 55 LNKKTKVNSGDRLQVFLPPPEPLELQPEPIPLDILYEDDSLIIINKSAGLVVHPAPGHTT 114
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLV+G+L+HC P L G RPGIVHRLDK T+G
Sbjct: 115 GTLVHGLLYHC--PNLVG----------------------IGGIQRPGIVHRLDKDTTGA 150
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQS---SGRIEVPISRDPNNRIRMAA 199
+VVAK +++H HL Q K T R Y+ + GVP G I VPI R +R +MA
Sbjct: 151 IVVAKTDYAHQHLQAQLKAKTARREYLGVVYGVPRHEDTHQGTINVPIGRHRGDRKKMAV 210
Query: 200 IPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+P N R A + ++++E L G LVE+RLETGRTHQ
Sbjct: 211 VPVENG---GREAITHWQIVERL--GNYTLVEFRLETGRTHQ 247
>gi|452990186|emb|CCQ98635.1| pseudouridylate synthase [Clostridium ultunense Esp]
Length = 307
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 128/220 (58%), Gaps = 32/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K+ ++ V GD + + + L+ E IPL I+YED +++VVNKP MVVHPAPGN+
Sbjct: 53 KVKANYRVAVGDEILLLVPPPEALKVLPEAIPLQILYEDRDLVVVNKPRGMVVHPAPGNS 112
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
+GTLVN +L+H +D+S I+G +RPGIVHR+DK TSG
Sbjct: 113 SGTLVNALLYHV----------------KDLS-------GINGI-LRPGIVHRIDKETSG 148
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LLVVAK + +H L+ Q K H +ER Y+++ +G G ++ PI RDP +R +MA P
Sbjct: 149 LLVVAKSDRAHLGLAAQLKEHAMERSYLAVVNGHFPHRLGTVDAPIGRDPRDRKKMAVDP 208
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +HA + + V+E L L+ RLETGRTHQ
Sbjct: 209 ------KGKHAVTHFSVVEELP--KHTLLRCRLETGRTHQ 240
>gi|407718127|ref|YP_006795532.1| 23S RNA-specific pseudouridylate synthase [Leuconostoc carnosum
JB16]
gi|407241883|gb|AFT81533.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc carnosum
JB16]
Length = 304
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 129/226 (57%), Gaps = 33/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K+ S+ V GD V T E+Q AEDIPL IVYED++++VVNKP MVVH
Sbjct: 41 VLVNQKKVKRSYKVVSGDTVTLTPPEVQNTAIVAEDIPLSIVYEDNDLIVVNKPQGMVVH 100
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ +GTLVN +L+H L S+I+G RPGIVHR+
Sbjct: 101 PAAGHTSGTLVNALLYHAPL------------------------STING-EFRPGIVHRI 135
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
D+ TSGLL+VAK++ +H LS Q K H +R+Y +L G ++ SG I PI+R +R
Sbjct: 136 DRDTSGLLMVAKNDEAHQALSAQLKDHKNQRIYYALVRGEFTEESGTINAPIARHKVDRK 195
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A G R A + ++V++ G L++ +LETGRTHQ
Sbjct: 196 KQAVQSG------GREAITHFEVLKRYV--GYTLLKVQLETGRTHQ 233
>gi|420144301|ref|ZP_14651789.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
gi|391855753|gb|EIT66302.1| Pseudouridine synthase [Lactococcus garvieae IPLA 31405]
Length = 301
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 122/210 (58%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G+ + + E++ L +AEDIPLDIVYED +V V+NKP MVVHP+ G+A+GTLVN I++
Sbjct: 55 GEAIAYELPEVEVLDIQAEDIPLDIVYEDSDVAVINKPQGMVVHPSAGHASGTLVNAIMY 114
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
H +D+ SSI+G IRPGIVHR+DK TSGLL++AK++ +
Sbjct: 115 HI----------------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAKNDAA 150
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K T +R YI+L G G IE PI R+P R + A I G +
Sbjct: 151 HESLAAQLKAKTNKRRYIALVHGELPNEKGTIEAPIGRNPKERKKQAVISG------GKP 204
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E G LV LETGRTHQ
Sbjct: 205 AKTHFTVMERFP--GYTLVALELETGRTHQ 232
>gi|300867006|ref|ZP_07111676.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300334989|emb|CBN56842.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 319
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 121/218 (55%), Gaps = 30/218 (13%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S NVK GD ++ I + +PL + E IPLDI+YED++++++NKPA +VVHPA G+ G
Sbjct: 60 SKKENVKNGDRIHIAIPDAEPLDLKPEAIPLDILYEDESLIIINKPAGLVVHPAAGHPGG 119
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L HC L + G +RPGIVHRLDK TSG +
Sbjct: 120 TLVNALLAHCPLAEI-------------------------GGVLRPGIVHRLDKDTSGAI 154
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK + +H HL Q K T R Y+ + G +G I++PI R +R +MA +
Sbjct: 155 VVAKTDFAHQHLQAQLKAKTARREYLGVVYGTLKTENGTIDLPIGRHSVDRKKMAVV--- 211
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ E L G L+ ++LETGRTHQ
Sbjct: 212 TIEKGGRSAVTHWQIQERL--GNYTLIHFQLETGRTHQ 247
>gi|57233860|ref|YP_182086.1| ribosomal large subunit pseudouridine synthase D [Dehalococcoides
ethenogenes 195]
gi|57224308|gb|AAW39365.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Dehalococcoides ethenogenes 195]
Length = 300
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD + I P +AEDIPL+I+++D ++L++NKP + VHPAPG+ TL
Sbjct: 50 SLKLKNGDTITIEIPPETPPELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
+NG+L E F D +RPGIVHRLDK TSGLL+V
Sbjct: 110 INGVL-------ALEPEMEDFDDP-----------------LRPGIVHRLDKDTSGLLLV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ + A+LS QFK T+ + Y++L G + G IE P+ RDP NR ++A + SN
Sbjct: 146 AKNREALANLSAQFKERTVRKYYLTLVQGELHPAEGFIEAPLGRDPQNRQKIAVV--SN- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + YKV+ + G +L+E +LETGRTHQ
Sbjct: 203 ---GRPARTGYKVLRYIQ--GYSLLEVKLETGRTHQ 233
>gi|383753720|ref|YP_005432623.1| putative ribosomal large subunit pseudouridine synthase D
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365772|dbj|BAL82600.1| putative ribosomal large subunit pseudouridine synthase D
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 312
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 124/214 (57%), Gaps = 31/214 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
++GG+ V + E +P+ E EDIPLDI+YED +++VVNK MVVHPA G +GTLVN
Sbjct: 55 KLRGGEAVQVALPEAEPISVEPEDIPLDILYEDKDIIVVNKARGMVVHPASGVYSGTLVN 114
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC +D+ S I+G IRPGIVHRLDK TSG++V AK
Sbjct: 115 ALLHHC----------------QDL-------SGING-EIRPGIVHRLDKDTSGVMVCAK 150
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
++ +H L+EQ + R Y ++ G + +G I+ I R P +R +MA + + K
Sbjct: 151 NDTAHLDLAEQIRTKAAHRTYWAIVYGNIKEEAGIIKGDIGRHPTDRKKMAIVRENGK-- 208
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + +KV+E G LVE +LETGRTHQ
Sbjct: 209 ---PAVTHFKVLERF--GEYTLVECKLETGRTHQ 237
>gi|78044742|ref|YP_360337.1| ribosomal large subunit pseudouridine synthase A [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996857|gb|ABB15756.1| ribosomal large subunit pseudouridine synthase, RluA family
[Carboxydothermus hydrogenoformans Z-2901]
Length = 305
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 124/216 (57%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V+GG+++ + + L + E+IPLDIVYED++++VVNK A MVVHPA GN GTL
Sbjct: 54 SYKVRGGEIIAVLLPPPRELSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC + S G +RPGIVHRLDK TSGLLVV
Sbjct: 114 VNALLYHCQ------------------------NLSGIGGVLRPGIVHRLDKDTSGLLVV 149
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ K R Y ++ G G I++PI R P +R +MA + SN
Sbjct: 150 AKNDLAHQSLAEQIKEKKAVREYWTIVHGYLKNKEGIIDLPIGRHPRDRQKMAVV--SN- 206
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + YKV+E G L++ +L TGRTHQ
Sbjct: 207 ---GKTAQTVYKVLEEF-NKGFTLIQAKLLTGRTHQ 238
>gi|344203445|ref|YP_004788588.1| RluA family pseudouridine synthase [Muricauda ruestringensis DSM
13258]
gi|343955367|gb|AEM71166.1| pseudouridine synthase, RluA family [Muricauda ruestringensis DSM
13258]
Length = 343
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 123/218 (56%), Gaps = 33/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRA--EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK GD V E P EDIPLDIVYEDD +LVVNKPA MVVHP GN +G
Sbjct: 67 NYKVKAGDEVKVMF-EHPPYEFLLTPEDIPLDIVYEDDVLLVVNKPAGMVVHPGHGNYSG 125
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TL+N +++H F + + +S RPG+VHR+DK TSGLL
Sbjct: 126 TLINALVYH-------------------------FENLPNNSSDRPGLVHRIDKDTSGLL 160
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
V+AK E + HL++QF + ER Y++L G + G +E I+R+P NR++M P
Sbjct: 161 VIAKTESAMTHLAQQFFDKSSEREYVALVWGNVEEDEGTVEGHIARNPKNRLQMMVFPEG 220
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + + A + YKV+E G L+ +LETGRTHQ
Sbjct: 221 D---EGKDAVTHYKVLERF--GYVTLISCKLETGRTHQ 253
>gi|423452804|ref|ZP_17429657.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X1-1]
gi|423511927|ref|ZP_17488458.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-1]
gi|401139363|gb|EJQ46925.1| RluA family pseudouridine synthase [Bacillus cereus BAG5X1-1]
gi|402450188|gb|EJV82022.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-1]
Length = 302
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VKG D + TI E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTL
Sbjct: 53 NYKVKGNDEITVTIPEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|419799995|ref|ZP_14325308.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
gi|385696494|gb|EIG26975.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0449]
Length = 296
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E++ + EAED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYTVKEGDIIQYDVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H +D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 106 VNALLYHV----------------KDL-------SGING-ELRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+E+ K R Y ++ G G IE PI R +R + A
Sbjct: 142 AKNDQAHVALAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R++V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKTAVTRFQVLERF--GNYTLVELQLETGRTHQ 229
>gi|423604480|ref|ZP_17580373.1| RluA family pseudouridine synthase [Bacillus cereus VD102]
gi|401245100|gb|EJR51458.1| RluA family pseudouridine synthase [Bacillus cereus VD102]
Length = 302
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVRENDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|319408111|emb|CBI81764.1| ribosomal large subunit pseudouridine synthase D [Bartonella
schoenbuchensis R1]
Length = 340
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 122/216 (56%), Gaps = 34/216 (15%)
Query: 35 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 94
+ I L+ + E E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 61 IELIIPPLKNVHLEGEAIVLDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIHHCG 120
Query: 95 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAH 154
+ S I G RPGIVHRLDK TSG++VVAK++ +H
Sbjct: 121 ----------------------DSLSGIGGVK-RPGIVHRLDKNTSGVMVVAKNDFAHKS 157
Query: 155 LSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQAR 210
LS QF H ++R Y +L P ++ G I+VP+ R P+NRI+ + N H AR
Sbjct: 158 LSAQFSDHGRTCALDRRYHALIWNAPRRNIGTIDVPLGRSPHNRIKQTVVRHQNVH--AR 215
Query: 211 HAASRYKVIEILAGGGSA-----LVEWRLETGRTHQ 241
HA + + ++E A L+E RLETGRTHQ
Sbjct: 216 HAITHFSLLEKYKTCADAEPFASLLECRLETGRTHQ 251
>gi|300767399|ref|ZP_07077311.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300495218|gb|EFK30374.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 320
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 120/216 (55%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++VK GD + +Q E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TL
Sbjct: 67 KYHVKPGDEIVVAAQTVQQTTIEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTL 126
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H L S+I+G RPGIVHR+DK TSGLL+V
Sbjct: 127 VNALLYHSPL------------------------STING-EFRPGIVHRIDKDTSGLLMV 161
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K T R Y++L GV + +G I P+ R P +R + A I
Sbjct: 162 AKNDRAHQSLAAQLKAKTNLREYVALVHGVIKEDTGTINAPLGRSPKDRKKQAII----- 216
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV++ L+ RLETGRTHQ
Sbjct: 217 -KTGRPAVTHFKVLKRYQ--HYTLISCRLETGRTHQ 249
>gi|331701446|ref|YP_004398405.1| RluA family pseudouridine synthase [Lactobacillus buchneri NRRL
B-30929]
gi|329128789|gb|AEB73342.1| pseudouridine synthase, RluA family [Lactobacillus buchneri NRRL
B-30929]
Length = 302
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 125/226 (55%), Gaps = 33/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
L ++ + + + VK GD + + P+ E E++PLDIVYEDD+V+VVNKP MVVH
Sbjct: 38 LKINGEPVKPKYQVKSGDKIQVDSVQPTPISLEPENMPLDIVYEDDDVIVVNKPQGMVVH 97
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
P+PG+ TLVN +L+H L S+I+G RPGIVHR+
Sbjct: 98 PSPGHPDHTLVNALLYHSPL------------------------STING-EFRPGIVHRI 132
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK++ +H LS+Q + R Y++L G + SG + PI R P +R
Sbjct: 133 DKDTSGLLMVAKNDKAHQFLSQQLQAQKNLRKYVALVHGRIKEDSGVVNAPIGRSPKDRK 192
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + R A + ++V+E A LV RLETGRTHQ
Sbjct: 193 KQAVV------SDGRSAVTHFEVLERFA--DYTLVACRLETGRTHQ 230
>gi|282850533|ref|ZP_06259912.1| pseudouridine synthase, RluA family [Veillonella parvula ATCC
17745]
gi|282580026|gb|EFB85430.1| pseudouridine synthase, RluA family [Veillonella parvula ATCC
17745]
Length = 307
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 123/208 (59%), Gaps = 31/208 (14%)
Query: 34 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 93
++ I E + + + EDIPLD +YED ++++VNKP MVVHPA GN +GTLVN +L HC
Sbjct: 57 IIRVEIPEPESIEVKPEDIPLDYLYEDHDIVIVNKPRGMVVHPAVGNYSGTLVNALLFHC 116
Query: 94 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHA 153
+D+S I+G IRPGIVHRLDK TSG+++VAK++ +H
Sbjct: 117 ----------------KDLS-------GING-EIRPGIVHRLDKDTSGVMMVAKNDAAHI 152
Query: 154 HLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAA 213
L+EQ K H+ R Y +L G + G I+ PI R P +R++MA + ++K A
Sbjct: 153 GLAEQVKTHSARRTYWALVQGNIVEEKGTIKAPIGRHPKDRMKMAVVFENSK-----DAV 207
Query: 214 SRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +KV+E G LVE LETGRTHQ
Sbjct: 208 THFKVLERY--GHQTLVECNLETGRTHQ 233
>gi|229198004|ref|ZP_04324718.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1293]
gi|423574501|ref|ZP_17550620.1| RluA family pseudouridine synthase [Bacillus cereus MSX-D12]
gi|228585483|gb|EEK43587.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1293]
gi|401212026|gb|EJR18772.1| RluA family pseudouridine synthase [Bacillus cereus MSX-D12]
Length = 302
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVRENDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|163786072|ref|ZP_02180520.1| ribosomal large subunit pseudouridine synthase D [Flavobacteriales
bacterium ALC-1]
gi|159877932|gb|EDP71988.1| ribosomal large subunit pseudouridine synthase D [Flavobacteriales
bacterium ALC-1]
Length = 343
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 129/230 (56%), Gaps = 33/230 (14%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAE---AEDIPLDIVYEDDNVLVVNKPAH 71
+F++ + ++ VK D V T+ P AEDIP+D+VYEDD++LVVNKPA
Sbjct: 55 CIFINNSPVKSNYKVKPNDFV--TVKFKHPPHENLLIAEDIPIDVVYEDDDLLVVNKPAG 112
Query: 72 MVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGI 131
MVVHP GN +GTL+N ++ H F + + +S RPG+
Sbjct: 113 MVVHPGHGNYSGTLINALIFH-------------------------FENLPNNSSDRPGL 147
Query: 132 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDP 191
VHR+DK TSGLLVVAK E + AHLS QF T ER Y++L G ++ G IE I R P
Sbjct: 148 VHRIDKDTSGLLVVAKTEQAMAHLSNQFAKKTSEREYVALVWGNMTEDEGIIEGNIGRHP 207
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
NR++ + ++ + + A + YKVIE L G LV +LETGRTHQ
Sbjct: 208 KNRLQ-NTVYLDDEADKGKPAITHYKVIERL--GYVTLVSCKLETGRTHQ 254
>gi|42782985|ref|NP_980232.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 10987]
gi|49186742|ref|YP_029994.1| RNA pseudouridylate synthase [Bacillus anthracis str. Sterne]
gi|118479113|ref|YP_896264.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|165872288|ref|ZP_02216925.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|167636442|ref|ZP_02394741.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|167641146|ref|ZP_02399401.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|170688858|ref|ZP_02880061.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|170708814|ref|ZP_02899250.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|177654900|ref|ZP_02936617.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|190565878|ref|ZP_03018797.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|196035788|ref|ZP_03103190.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus W]
gi|196045901|ref|ZP_03113130.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|218905022|ref|YP_002452856.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|225865874|ref|YP_002751252.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|228916530|ref|ZP_04080096.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228928941|ref|ZP_04091973.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228935208|ref|ZP_04098034.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228947612|ref|ZP_04109902.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229092938|ref|ZP_04224071.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-42]
gi|229123406|ref|ZP_04252610.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
95/8201]
gi|229186133|ref|ZP_04313302.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BGSC 6E1]
gi|254683398|ref|ZP_05147258.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. CNEVA-9066]
gi|254735932|ref|ZP_05193638.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Western North America USA6153]
gi|254739820|ref|ZP_05197513.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Kruger B]
gi|254751010|ref|ZP_05203049.1| ribosomal large subunit pseudouridine synthase, RluA family protein
[Bacillus anthracis str. Vollum]
gi|301055383|ref|YP_003793594.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
gi|376267789|ref|YP_005120501.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
F837/76]
gi|384181707|ref|YP_005567469.1| 23S rRNA pseudouridine synthase D [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|386737715|ref|YP_006210896.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. H9401]
gi|421507433|ref|ZP_15954353.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. UR-1]
gi|421639648|ref|ZP_16080239.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. BF1]
gi|423550359|ref|ZP_17526686.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
gi|42738912|gb|AAS42840.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus ATCC 10987]
gi|49180669|gb|AAT56045.1| RNA pseudouridylate synthase [Bacillus anthracis str. Sterne]
gi|118418338|gb|ABK86757.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis str. Al Hakam]
gi|164711964|gb|EDR17504.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0488]
gi|167510926|gb|EDR86317.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0193]
gi|167528184|gb|EDR90971.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0442]
gi|170126299|gb|EDS95190.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0389]
gi|170667213|gb|EDT17973.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0465]
gi|172080411|gb|EDT65498.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. A0174]
gi|190562797|gb|EDV16763.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. Tsiankovskii-I]
gi|195991437|gb|EDX55403.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus W]
gi|196023341|gb|EDX62019.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB108]
gi|218538740|gb|ACK91138.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH820]
gi|225786554|gb|ACO26771.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus 03BB102]
gi|228597309|gb|EEK54960.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BGSC 6E1]
gi|228660182|gb|EEL15818.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
95/8201]
gi|228690442|gb|EEL44226.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-42]
gi|228812132|gb|EEM58463.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824373|gb|EEM70179.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228830748|gb|EEM76353.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228843109|gb|EEM88191.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|300377552|gb|ADK06456.1| ribosomal large subunit pseudouridylate synthase D [Bacillus cereus
biovar anthracis str. CI]
gi|324327791|gb|ADY23051.1| 23S rRNA pseudouridine synthase D [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|364513589|gb|AEW56988.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
F837/76]
gi|384387567|gb|AFH85228.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. H9401]
gi|401189975|gb|EJQ97025.1| RluA family pseudouridine synthase [Bacillus cereus ISP3191]
gi|401822567|gb|EJT21717.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. UR-1]
gi|403393313|gb|EJY90558.1| ribosomal large subunit pseudouridine synthase D [Bacillus
anthracis str. BF1]
Length = 302
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVRENDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|217961313|ref|YP_002339881.1| RluA family ribosomal large subunit pseudouridine synthase
[Bacillus cereus AH187]
gi|222097338|ref|YP_002531395.1| ribosomal large subunit pseudouridine synthase, rlud subfamily
[Bacillus cereus Q1]
gi|229140541|ref|ZP_04269096.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST26]
gi|375285818|ref|YP_005106257.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
NC7401]
gi|423353596|ref|ZP_17331223.1| RluA family pseudouridine synthase [Bacillus cereus IS075]
gi|423567211|ref|ZP_17543458.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A12]
gi|217063169|gb|ACJ77419.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH187]
gi|221241396|gb|ACM14106.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Bacillus cereus Q1]
gi|228643102|gb|EEK99378.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST26]
gi|358354345|dbj|BAL19517.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
NC7401]
gi|401089409|gb|EJP97580.1| RluA family pseudouridine synthase [Bacillus cereus IS075]
gi|401214299|gb|EJR21029.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A12]
Length = 302
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVRENDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|206976765|ref|ZP_03237669.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus H3081.97]
gi|423374310|ref|ZP_17351648.1| RluA family pseudouridine synthase [Bacillus cereus AND1407]
gi|206745075|gb|EDZ56478.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus H3081.97]
gi|401094222|gb|EJQ02304.1| RluA family pseudouridine synthase [Bacillus cereus AND1407]
Length = 302
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVRENDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|169335052|ref|ZP_02862245.1| hypothetical protein ANASTE_01458 [Anaerofustis stercorihominis DSM
17244]
gi|169257790|gb|EDS71756.1| pseudouridine synthase, RluA family [Anaerofustis stercorihominis
DSM 17244]
Length = 301
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 134/226 (59%), Gaps = 31/226 (13%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+FL+ +K+ S + G+ V + E + L AE+IP++IVYED++V++V+KP MVVH
Sbjct: 42 VFLNDEKVKPSRKLIAGERVKVNLPEPEVLDVIAENIPINIVYEDEDVVIVDKPQGMVVH 101
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA GN +GTLVN +++H +D+S SI+G IRPGIVHR+
Sbjct: 102 PANGNHSGTLVNALMYH----------------VKDLS-------SINGV-IRPGIVHRI 137
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL++AK++++H HL+ QFK H+I R Y ++ G+ ++SG I+ PI RD R
Sbjct: 138 DKDTSGLLIIAKNDNAHNHLAVQFKEHSINRRYKTICHGIIHENSGTIDAPIGRDKIKRK 197
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
M ++K A + + VI+ ++ LETGRTHQ
Sbjct: 198 EMCVTQSNSK-----RAVTHFDVIK--RYDKYTFLDVHLETGRTHQ 236
>gi|39995193|ref|NP_951144.1| 23S rRNA synthase [Geobacter sulfurreducens PCA]
gi|409910641|ref|YP_006889106.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
sulfurreducens KN400]
gi|39981955|gb|AAR33417.1| 23S rRNA synthase [Geobacter sulfurreducens PCA]
gi|298504197|gb|ADI82920.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
sulfurreducens KN400]
Length = 322
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 115/190 (60%), Gaps = 31/190 (16%)
Query: 52 IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAED 111
IPL +++ED +V+VV+KPA MVVHPA GN GTLVN +L HC+ D
Sbjct: 82 IPLVVLHEDGDVVVVDKPAGMVVHPAAGNPGGTLVNALLAHCT----------------D 125
Query: 112 ISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISL 171
+S G IRPGIVHR+DK TSG+LVVAK + +H LS QF HT++RVY++L
Sbjct: 126 LSG--------IGGEIRPGIVHRIDKDTSGVLVVAKSDRAHESLSRQFHDHTVKRVYLAL 177
Query: 172 TSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVE 231
G P + GRIE I R P +R +M+ G+ +HG+ HA + ++V G L+
Sbjct: 178 VYGSPREDKGRIEGAIGRHPTDRKKMS---GAARHGK--HAVTHWRVAARFT--GVTLLR 230
Query: 232 WRLETGRTHQ 241
RLETGRTHQ
Sbjct: 231 LRLETGRTHQ 240
>gi|402555984|ref|YP_006597255.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
FRI-35]
gi|401797194|gb|AFQ11053.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
FRI-35]
Length = 302
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVRENDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|306841397|ref|ZP_07474100.1| pseudouridine synthase, RluA family [Brucella sp. BO2]
gi|306288582|gb|EFM59931.1| pseudouridine synthase, RluA family [Brucella sp. BO2]
Length = 294
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 125/226 (55%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + + E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 11 TKQKLREGMNIAIVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 70
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++HC + S I G RPGIVHRLDK TSG++V
Sbjct: 71 LVNALIYHCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 107
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK+ +H HLSEQF H +ER Y++L G+ + G ++ + R +R + A +
Sbjct: 108 VAKNNRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQAVV 167
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 168 --REEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQ 211
>gi|385838116|ref|YP_005875746.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris A76]
gi|358749344|gb|AEU40323.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. cremoris A76]
Length = 301
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 130/226 (57%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+F++ + + VK GD + I + + L AED+ L+I+YED +V VVNKP MVVH
Sbjct: 39 VFVNNEAKKAKYKVKTGDRIEFEIPQAEVLDVAAEDLSLEIIYEDSDVAVVNKPQGMVVH 98
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+A+GTLVN I++H +D+ SSI+G IRPGIVHR+
Sbjct: 99 PAAGHASGTLVNAIMYHI----------------KDL-------SSINGV-IRPGIVHRI 134
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL++AK++ +H L+ Q K T +R Y+++ G + G IE PI R+ +R
Sbjct: 135 DKDTSGLLMIAKNDKAHESLAAQLKDKTSKRRYLAIVHGELANDKGTIEAPIGRNLKDRK 194
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + G + A + ++V+E G L+ RLETGRTHQ
Sbjct: 195 KQAVVSG------GKPAVTHFEVLERFV--GYTLIALRLETGRTHQ 232
>gi|13473214|ref|NP_104781.1| pseudouridine synthase [Mesorhizobium loti MAFF303099]
gi|14023962|dbj|BAB50567.1| pseudouridine synthase [Mesorhizobium loti MAFF303099]
Length = 329
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 124/223 (55%), Gaps = 35/223 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+ G+ V+ + E +P + E I LD++YEDD ++V+NKPA +VVHP GN TGTLVN
Sbjct: 52 KMSAGESVSIAMPEPEPAAPQGEAIALDVLYEDDALIVINKPAGLVVHPGAGNWTGTLVN 111
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++HHC + S I G RPGIVHRLDK TSG++VVAK
Sbjct: 112 ALIHHCG----------------------DSLSGIGGVR-RPGIVHRLDKETSGVMVVAK 148
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+ +H LSE F H +ER Y++L G+P + +G ++ P+ R +R+R A +P
Sbjct: 149 TDRAHKALSEAFADHGRTGDLERAYLALVWGIPQRPTGTVDAPLGR-AADRVRRAVVPEG 207
Query: 204 NKHGQARHAASRYKVIEILAG-----GGSALVEWRLETGRTHQ 241
ARHA + + V E ++LVE RLETGRTHQ
Sbjct: 208 RD--DARHAVTHFAVQERFGENQQEFATASLVECRLETGRTHQ 248
>gi|49478436|ref|YP_037954.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|49329992|gb|AAT60638.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 302
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVREDDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|424883104|ref|ZP_18306736.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392519467|gb|EIW44199.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 341
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 138/252 (54%), Gaps = 43/252 (17%)
Query: 7 EFNQVSVLAL------FLSMDKLS-VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE 59
EF++ + AL FL + ++ V+ GD T+ E + + EDIPLDI++E
Sbjct: 36 EFSRSRIKALIKDGQVFLRGEPVTDPQRKVRTGDSFELTLPEPEDPTPQGEDIPLDILHE 95
Query: 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFS 119
DD+V+V++KP+ +VVHP GN TGTLVN ++HHCS +
Sbjct: 96 DDDVIVISKPSGLVVHPGAGNWTGTLVNALIHHCS----------------------DTL 133
Query: 120 SSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----TIERVYISLTSGV 175
S I G RPGIVHRLDK T+G++VVAK++ +H HLS QF H +ER Y ++ G
Sbjct: 134 SGIGGVR-RPGIVHRLDKDTTGVMVVAKNDIAHRHLSLQFADHGRTMPLERAYQAIVWGR 192
Query: 176 PSQSSGRIEVPISRDPNNRIRMAAI-PGSNKHGQARHAASRYKVIEIL-----AGGGSAL 229
P SG ++ P+ R +R R A P S A A + Y+VIE A ++L
Sbjct: 193 PRSLSGMVDAPLGRATGDRTRRAVKRPDSQ---DADEAITHYQVIERFHEKPDATAFASL 249
Query: 230 VEWRLETGRTHQ 241
VE RLETGRTHQ
Sbjct: 250 VECRLETGRTHQ 261
>gi|424872040|ref|ZP_18295702.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393167741|gb|EJC67788.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 341
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 138/252 (54%), Gaps = 43/252 (17%)
Query: 7 EFNQVSVLAL------FLSMDKLS-VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE 59
EF++ + AL FL + ++ V+ GD T+ E + + EDIPLDI++E
Sbjct: 36 EFSRSRIKALIKDGQVFLRGEPVTDPQRKVRTGDSFELTLPEPEDPTPQGEDIPLDILHE 95
Query: 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFS 119
DD+V+V++KP+ +VVHP GN TGTLVN ++HHCS +
Sbjct: 96 DDDVIVISKPSGLVVHPGAGNWTGTLVNALIHHCS----------------------DTL 133
Query: 120 SSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----TIERVYISLTSGV 175
S I G RPGIVHRLDK T+G++VVAK++ +H HLS QF H +ER Y ++ G
Sbjct: 134 SGIGGVR-RPGIVHRLDKDTTGVMVVAKNDIAHRHLSLQFADHGRTMPLERAYQAIVWGR 192
Query: 176 PSQSSGRIEVPISRDPNNRIRMAAI-PGSNKHGQARHAASRYKVIEIL-----AGGGSAL 229
P SG ++ P+ R +R R A P S A A + Y+VIE A ++L
Sbjct: 193 PRTLSGTVDAPLGRATGDRTRRAVKRPDSQ---DADEAITHYQVIERFHEKPDATAFASL 249
Query: 230 VEWRLETGRTHQ 241
VE RLETGRTHQ
Sbjct: 250 VECRLETGRTHQ 261
>gi|417001126|ref|ZP_11941040.1| pseudouridine synthase, RluA family [Veillonella parvula
ACS-068-V-Sch12]
gi|333975609|gb|EGL76488.1| pseudouridine synthase, RluA family [Veillonella parvula
ACS-068-V-Sch12]
Length = 307
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 124/208 (59%), Gaps = 31/208 (14%)
Query: 34 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 93
+++ I E + + + EDIPLD +YED ++++VNKP MVVHPA GN +GTLVN +L HC
Sbjct: 57 VIHVEIPEPESIEVKPEDIPLDYLYEDHDIVIVNKPRGMVVHPAVGNYSGTLVNALLFHC 116
Query: 94 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHA 153
+D+S I+G IRPGIVHRLDK TSG+++VAK++ +H
Sbjct: 117 ----------------KDLS-------GING-EIRPGIVHRLDKDTSGVMMVAKNDAAHI 152
Query: 154 HLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAA 213
L+EQ K H+ R Y +L G + G I+ PI R P +R++MA + ++K A
Sbjct: 153 GLAEQVKAHSARRTYWALVQGNIVEEKGTIKAPIGRHPKDRMKMAVVFENSK-----DAV 207
Query: 214 SRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +KV+E G LVE LETGRTHQ
Sbjct: 208 THFKVLERY--GHQTLVECNLETGRTHQ 233
>gi|307944601|ref|ZP_07659941.1| ribosomal large subunit pseudouridine synthase D [Roseibium sp.
TrichSKD4]
gi|307772350|gb|EFO31571.1| ribosomal large subunit pseudouridine synthase D [Roseibium sp.
TrichSKD4]
Length = 341
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 123/224 (54%), Gaps = 36/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
H V G + T+ E + + E+IPL I+YEDD+++VV+KPA +VVHP GN TGTL
Sbjct: 65 KHRVNEGQTLTLTLPEPEDPDPKGENIPLSIIYEDDHLIVVDKPAGLVVHPGAGNLTGTL 124
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++HHC S S G+ RPGIVHR+DK TSGLLVV
Sbjct: 125 VNALIHHCG-----------------------DSLSGIGSVKRPGIVHRIDKDTSGLLVV 161
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK + +H LSEQF H +ER Y +L G PS G I ++R NR ++A +
Sbjct: 162 AKTDQAHQGLSEQFADHGKTGPLERAYSALVWGAPSSLKGTINANLARSQANRQKIAVVK 221
Query: 202 GSNKHGQARHAASRYKVIEILAGGGS----ALVEWRLETGRTHQ 241
+ RHA +R++V E + +L+E RLETGRTHQ
Sbjct: 222 TA-----GRHAITRWQVKERFGEKDTEALASLMECRLETGRTHQ 260
>gi|229918562|ref|YP_002887208.1| RluA family pseudouridine synthase [Exiguobacterium sp. AT1b]
gi|229469991|gb|ACQ71763.1| pseudouridine synthase, RluA family [Exiguobacterium sp. AT1b]
Length = 303
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 129/227 (56%), Gaps = 31/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
AL ++ + ++ ++ GD V + E L EDIPL+IV+ED++V+VVNK MVV
Sbjct: 37 ALLVNGSAVKANYKLQVGDEVEVNVPEAVELEVLPEDIPLEIVFEDEDVIVVNKARGMVV 96
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPA G+ +GTLVN +L+HC DD S I+G RPGIVHR
Sbjct: 97 HPAAGHTSGTLVNALLYHC--------------------DD---LSGINGVK-RPGIVHR 132
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK T+GLL+VAK++ +H L+ Q K TI+R YI+L G G IE PI RD N+R
Sbjct: 133 IDKDTTGLLMVAKNDLAHESLASQLKDKTIKREYIALVHGELVHELGTIEAPIGRDTNDR 192
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RM + A+ A + ++++E LVE +LETGRTHQ
Sbjct: 193 QRMTVTDRN-----AKEAVTHFRLLERYK--DFTLVECKLETGRTHQ 232
>gi|357008383|ref|ZP_09073382.1| YlyB [Paenibacillus elgii B69]
Length = 317
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 127/216 (58%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ + GD + + E + L E I LD+VYED +V+VVNKP MVVHPAPG+ +GTL
Sbjct: 64 NYKLSEGDAMTLVMPEPEELVLTPEPIALDVVYEDSDVIVVNKPRGMVVHPAPGHYSGTL 123
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC +D+S I+G IRPGIVHR+DK TSGLL+
Sbjct: 124 VNALLYHC----------------KDLS-------GINGV-IRPGIVHRIDKDTSGLLMA 159
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H+ L+ Q K HT+ R Y +L G +G ++ PI RDP +R ++ + N
Sbjct: 160 AKNDLAHSGLAAQLKAHTVNRKYFALVHGNVPHENGTVDAPIGRDPKDR-KLYTVTERN- 217
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++HA + + V+E G L+E +LETGRTHQ
Sbjct: 218 ---SKHAVTHFLVLERF--GDYTLLELKLETGRTHQ 248
>gi|312866736|ref|ZP_07726950.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0405]
gi|311097817|gb|EFQ56047.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
F0405]
Length = 296
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E++ + EAED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYTVKEGDIIQYEVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H +D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 106 VNALLYHV----------------KDL-------SGING-ELRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+E+ K R Y ++ G G IE PI R +R + A
Sbjct: 142 AKNDQAHVALAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R++V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFQVLERF--GNYTLVELQLETGRTHQ 229
>gi|228940981|ref|ZP_04103539.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228973912|ref|ZP_04134487.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228980501|ref|ZP_04140811.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis Bt407]
gi|384187953|ref|YP_005573849.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar chinensis CT-43]
gi|410676268|ref|YP_006928639.1| pseudouridine synthase, RluA family [Bacillus thuringiensis Bt407]
gi|423385394|ref|ZP_17362650.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-2]
gi|423528248|ref|ZP_17504693.1| RluA family pseudouridine synthase [Bacillus cereus HuB1-1]
gi|452200334|ref|YP_007480415.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|228779321|gb|EEM27578.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis Bt407]
gi|228785778|gb|EEM33782.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228818660|gb|EEM64727.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|326941662|gb|AEA17558.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar chinensis CT-43]
gi|401635450|gb|EJS53205.1| RluA family pseudouridine synthase [Bacillus cereus BAG1X1-2]
gi|402451911|gb|EJV83730.1| RluA family pseudouridine synthase [Bacillus cereus HuB1-1]
gi|409175397|gb|AFV19702.1| pseudouridine synthase, RluA family [Bacillus thuringiensis Bt407]
gi|452105727|gb|AGG02667.1| Ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 302
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 127/219 (57%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKEEDEITVTIPEPEALDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 203 -DENG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|403514918|ref|YP_006655738.1| pseudouridine synthase [Lactobacillus helveticus R0052]
gi|403080356|gb|AFR21934.1| Pseudouridine synthase [Lactobacillus helveticus R0052]
Length = 303
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 125/218 (57%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ ++ GD + + ++PL E+IPLDIVYED++V+VVNKP MVVHPAPG+
Sbjct: 49 KVSYKIQAGDKIEINVPAVKPLDVVPENIPLDIVYEDEDVIVVNKPQGMVVHPAPGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H LA S++ RPGIVHR+DK TSGLL
Sbjct: 109 TLVNTLLYHTQ--DLAQSSE----------------------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK+ + L +Q T +R+Y ++ G + +G I+ PI R+P +R +MA +
Sbjct: 145 MIAKNAKARESLEDQLAHKTNKRIYWAIVHGNFGEENGVIDAPIGRNPYDRKKMAVVENG 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV++ G +L+E +LETGRTHQ
Sbjct: 205 KK------AVTHFKVLKQFK--GYSLIECQLETGRTHQ 234
>gi|348026140|ref|YP_004765945.1| pseudouridine synthase [Megasphaera elsdenii DSM 20460]
gi|341822194|emb|CCC73118.1| pseudouridine synthase [Megasphaera elsdenii DSM 20460]
Length = 305
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 118/210 (56%), Gaps = 30/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V I + + +DIPLDIVYED +++V+NK MVVHPA GN GTLVN +L+
Sbjct: 57 GDRVKAVIEVQEEYKVVPQDIPLDIVYEDKDIIVINKARGMVVHPAAGNPDGTLVNALLY 116
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC S I+G IRPGIVHRLDK TSG++V AK + +
Sbjct: 117 HCQGEL----------------------SGINGV-IRPGIVHRLDKDTSGVMVAAKTDEA 153
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+EQ K H+ R Y +L G S+ G ++ PI R P +RI+MA + K G R
Sbjct: 154 HKGLAEQIKAHSAHRTYWALVHGNISEERGIVDAPIGRHPKDRIKMAV---TFKGG--RE 208
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + +KV++ G VE +LETGRTHQ
Sbjct: 209 AVTHFKVLKRY--GDYTWVECKLETGRTHQ 236
>gi|237734795|ref|ZP_04565276.1| ribosomal large subunit pseudouridine synthase D [Mollicutes
bacterium D7]
gi|229382123|gb|EEO32214.1| ribosomal large subunit pseudouridine synthase D [Coprobacillus sp.
D7]
Length = 316
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 138/245 (56%), Gaps = 35/245 (14%)
Query: 1 MELVELEFNQVSVLA----LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDI 56
M+L EL Q+ + + ++ K S+ K D + TI + L E EDI L I
Sbjct: 32 MQLQELSRTQIQDMINQGLVLVNQKKEKASYKTKLNDEIEITILDNVDLDIEPEDISLKI 91
Query: 57 VYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDE 116
VYED++V+VV+KP M+VHP+ G GTLVN +L HC +D+S
Sbjct: 92 VYEDEDVIVVDKPTGMIVHPSAGIMHGTLVNALLFHC----------------KDLS--- 132
Query: 117 EFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVP 176
I+G + RPGIVHR+DK TSGLL+VAK++++H LS+Q K HT+ R Y++L G+
Sbjct: 133 ----GINGVN-RPGIVHRIDKETSGLLMVAKNDNAHRLLSKQLKDHTVVRRYVALVHGLI 187
Query: 177 SQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLET 236
G+++ PI R+P +R MA ++K A + + V++ +L+E RLET
Sbjct: 188 PHEHGKVDAPIGRNPKDRQSMAVTRTNSK-----EAVTNFTVLK--RYNAMSLIECRLET 240
Query: 237 GRTHQ 241
GRTHQ
Sbjct: 241 GRTHQ 245
>gi|322418237|ref|YP_004197460.1| RluA family pseudouridine synthase [Geobacter sp. M18]
gi|320124624|gb|ADW12184.1| pseudouridine synthase, RluA family [Geobacter sp. M18]
Length = 319
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 126/214 (58%), Gaps = 31/214 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+KGG++V + P + E+IPL+I+YED +V+VVNK A MVVHP GNA GTLVN
Sbjct: 54 RLKGGEVVTVIVPPPTPAEPQPEEIPLEILYEDADVVVVNKGAGMVVHPGAGNAEGTLVN 113
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HC +D+S G +RPGIVHR+DK TSG LV+AK
Sbjct: 114 ALLAHC----------------KDLSG--------IGGELRPGIVHRIDKDTSGTLVIAK 149
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H L+EQFK+H+I+R+Y++L G P + G IE I R P R +M+ G +HG
Sbjct: 150 SDRAHNGLAEQFKVHSIKRIYLALVYGSPKEERGHIESVIGRHPVERKKMS---GKARHG 206
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + ++V G LV +LETGRTHQ
Sbjct: 207 --KNAITHWRVEARYP--GITLVRLKLETGRTHQ 236
>gi|387879746|ref|YP_006310049.1| RluA family pseudouridine synthase [Streptococcus parasanguinis
FW213]
gi|386793197|gb|AFJ26232.1| RluA family pseudouridine synthase [Streptococcus parasanguinis
FW213]
Length = 296
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E++ + EAED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYTVKEGDIIQYEVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H +D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 106 VNALLYHI----------------KDL-------SGING-ELRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+E+ K R Y ++ G G IE PI R +R + A
Sbjct: 142 AKNDQAHVALAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R++V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFQVLERF--GNYTLVELQLETGRTHQ 229
>gi|377809731|ref|YP_005004952.1| RluA family pseudouridine synthase [Pediococcus claussenii ATCC
BAA-344]
gi|361056472|gb|AEV95276.1| pseudouridine synthase, RluA family protein [Pediococcus claussenii
ATCC BAA-344]
Length = 301
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 117/210 (55%), Gaps = 33/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V I + +P E + LDI+YEDD+V+V+NKP MVVHPAPG+ GTLVNG+L
Sbjct: 57 GDYVQILIPDPEPTEVIPEKMNLDIIYEDDDVIVINKPQGMVVHPAPGHKNGTLVNGLLA 116
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
H L T+ RPGIVHR+DK TSGLL+VAK++ +
Sbjct: 117 HTPLATI-------------------------NGEFRPGIVHRIDKDTSGLLMVAKNDDA 151
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
LS+Q K T +R Y+++ G ++ SG+I+ PI R +R +M I RH
Sbjct: 152 LISLSKQLKDKTTKRRYLAIVHGNITEDSGKIDAPIGRSKKDRKKMDVI------ADGRH 205
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + +KV++ G L+E LETGRTHQ
Sbjct: 206 AVTHFKVLKRF--GEYTLIECILETGRTHQ 233
>gi|406661144|ref|ZP_11069268.1| Ribosomal large subunit pseudouridine synthase D [Cecembia
lonarensis LW9]
gi|405555086|gb|EKB50136.1| Ribosomal large subunit pseudouridine synthase D [Cecembia
lonarensis LW9]
Length = 347
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 114/194 (58%), Gaps = 30/194 (15%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEAFS 107
AE IPLDIVYEDD +LVVNKPA MVVHPA GN TGTLVNG++++ + LPT+
Sbjct: 94 AEPIPLDIVYEDDQLLVVNKPAGMVVHPAHGNWTGTLVNGLVYYFNQLPTM--------- 144
Query: 108 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERV 167
G + RPG+VHR+DK TSGLLV+AK E + L+ QF H IER
Sbjct: 145 ---------------PGNTGRPGLVHRIDKDTSGLLVIAKSEQAMTDLANQFFHHQIERT 189
Query: 168 YISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGS 227
Y++L G P G I + R +R M A P + Q +HA + +KV++ L
Sbjct: 190 YLALVWGEPKDDMGTIVAHVGRSAKDRKVMEAYPDGS---QGKHAVTHWKVLKRLR--YV 244
Query: 228 ALVEWRLETGRTHQ 241
+L++ LETGRTHQ
Sbjct: 245 SLIQCNLETGRTHQ 258
>gi|116253506|ref|YP_769344.1| ribosomal large subunit pseudouridine synthase D [Rhizobium
leguminosarum bv. viciae 3841]
gi|115258154|emb|CAK09255.1| putative ribosomal large subunit pseudouridine synthase D
[Rhizobium leguminosarum bv. viciae 3841]
Length = 341
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 126/224 (56%), Gaps = 36/224 (16%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD T+ E + + EDIPLDI++EDD+V+V++KP+ +VVHP GN TGTLVN
Sbjct: 64 KVRTGDSFELTLPEPEDPTPQGEDIPLDILHEDDDVIVISKPSGLVVHPGAGNWTGTLVN 123
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++HHCS + S I G RPGIVHRLDK T+G++VVAK
Sbjct: 124 ALIHHCS----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVVAK 160
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI-PG 202
++ +H HLS QF H +ER Y ++ G P SG ++ P+ R +R R A P
Sbjct: 161 NDIAHRHLSLQFADHGRTMPLERAYQAIVWGRPRTLSGTVDAPLGRATGDRTRRAVKRPD 220
Query: 203 SNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
S A A + Y+VIE A ++LVE RLETGRTHQ
Sbjct: 221 SQ---DADEAITHYQVIERFHEKPDATAFASLVECRLETGRTHQ 261
>gi|385813705|ref|YP_005850098.1| Pseudouridine synthase [Lactobacillus helveticus H10]
gi|323466424|gb|ADX70111.1| Pseudouridine synthase [Lactobacillus helveticus H10]
Length = 310
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 124/218 (56%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ ++ GD + + ++PL E+IPLDIVYED++V+VVNKP MVVHPAPG+
Sbjct: 56 KVSYKIQAGDKIEINVPAVKPLDVVPENIPLDIVYEDEDVIVVNKPQGMVVHPAPGHPDH 115
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H +D++ E RPGIVHR+DK TSGLL
Sbjct: 116 TLVNALLYHT----------------QDLAQSPE--------GFRPGIVHRIDKDTSGLL 151
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK+ + L +Q T +R+Y ++ G + +G I+ PI R+P +R +MA +
Sbjct: 152 MIAKNAKARESLEDQLAHKTNKRIYWAIVHGNFGEENGVIDAPIGRNPYDRKKMAVVENG 211
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV+ G +L+E +LETGRTHQ
Sbjct: 212 KK------AVTHFKVLRQFK--GYSLIECQLETGRTHQ 241
>gi|227872363|ref|ZP_03990714.1| pseudouridylate synthase [Oribacterium sinus F0268]
gi|227841792|gb|EEJ52071.1| pseudouridylate synthase [Oribacterium sinus F0268]
Length = 303
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 128/221 (57%), Gaps = 30/221 (13%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+K S VK GD ++ I E + E IPLDIVYEDD++LVVNK MVVHPA G+
Sbjct: 45 EKAKASLKVKAGDRIDFDIPEQKDPEVLPEAIPLDIVYEDDDLLVVNKERGMVVHPAAGH 104
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
+GTLVN +L H A S+ SSI+G + RPGIVHR+DK T+
Sbjct: 105 YSGTLVNAVLAH------AGSSL----------------SSINGVN-RPGIVHRIDKDTT 141
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL++ K++ SH L++Q + H+I R Y +L G + G I PI RD +R + A
Sbjct: 142 GLLLICKNDLSHQSLAKQLEEHSITRRYHALVFGKIKEEDGIISAPIGRDEKDRKKQAI- 200
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
S KHG + A + YKV+E + S LVE RLETGRTHQ
Sbjct: 201 --SYKHG--KEALTHYKVLERFS--DSTLVECRLETGRTHQ 235
>gi|190893167|ref|YP_001979709.1| RNA-pseudouridylate synthase, ribosomal large subunit D [Rhizobium
etli CIAT 652]
gi|190698446|gb|ACE92531.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli CIAT 652]
Length = 354
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 126/224 (56%), Gaps = 36/224 (16%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD T+ E + + EDIPLDI+YEDD+++V++KPA +VVHP GN TGTLVN
Sbjct: 77 KVRAGDSFEITLPEPEDPTPQGEDIPLDILYEDDDLIVISKPAGLVVHPGSGNWTGTLVN 136
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++HHC TL S I G RPGIVHRLDK T+G++VVAK
Sbjct: 137 ALIHHCGA-TL---------------------SGIGGVR-RPGIVHRLDKDTTGVMVVAK 173
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI-PG 202
++ +H HLS QF H +ER Y ++ G P +G ++ P+ R +R R A P
Sbjct: 174 NDVAHRHLSLQFADHGRTMPLERAYRAIVWGRPRSLTGTVDAPLGRATGDRTRRAVKRPD 233
Query: 203 SNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
S A A + Y+VIE A ++LVE RLETGRTHQ
Sbjct: 234 SQ---DADEAITHYEVIERFHETPDATALASLVECRLETGRTHQ 274
>gi|229134702|ref|ZP_04263511.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST196]
gi|423518584|ref|ZP_17495065.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-4]
gi|228648748|gb|EEL04774.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST196]
gi|401160792|gb|EJQ68167.1| RluA family pseudouridine synthase [Bacillus cereus HuA2-4]
Length = 302
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VKG D + TI E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTL
Sbjct: 53 NYKVKGNDEITVTIPEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGIIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|423592111|ref|ZP_17568142.1| RluA family pseudouridine synthase [Bacillus cereus VD048]
gi|401232244|gb|EJR38746.1| RluA family pseudouridine synthase [Bacillus cereus VD048]
Length = 302
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VKG D + TI E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTL
Sbjct: 53 NYKVKGNDEITVTIPEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGIIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|308180606|ref|YP_003924734.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032591|ref|YP_004889582.1| RNA pseudouridylate synthase [Lactobacillus plantarum WCFS1]
gi|448821292|ref|YP_007414454.1| Pseudouridine synthase [Lactobacillus plantarum ZJ316]
gi|308046097|gb|ADN98640.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342241834|emb|CCC79068.1| RNA pseudouridylate synthase [Lactobacillus plantarum WCFS1]
gi|448274789|gb|AGE39308.1| Pseudouridine synthase [Lactobacillus plantarum ZJ316]
Length = 307
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 120/216 (55%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++VK GD + +Q E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TL
Sbjct: 54 KYHVKPGDEIVVAAQTVQQTTIEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H L S+I+G RPGIVHR+DK TSGLL+V
Sbjct: 114 VNALLYHSPL------------------------STING-EFRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K T R Y++L GV + +G I P+ R P +R + A +
Sbjct: 149 AKNDRAHQSLAAQLKAKTNLREYVALVHGVIKEDTGTINAPLGRSPKDRKKQAIV----- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV++ L+ RLETGRTHQ
Sbjct: 204 -KTGRPAVTHFKVLKRYQ--HYTLISCRLETGRTHQ 236
>gi|302035761|ref|YP_003796083.1| 23S rRNA pseudouridine synthase [Candidatus Nitrospira defluvii]
gi|300603825|emb|CBK40157.1| 23S rRNA pseudouridine synthase [Candidatus Nitrospira defluvii]
Length = 321
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 128/226 (56%), Gaps = 26/226 (11%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ + S +K GD + + +PL + E IP DI++ED +LV++KPA +VVH
Sbjct: 47 ILINGQTIRPSQKIKPGDRIRLEVPRPEPLDLKPEAIPFDILHEDAELLVLHKPAGLVVH 106
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPGN +GTLVN +LHH A+S + S G RPG+VHRL
Sbjct: 107 PAPGNWSGTLVNALLHH-----FATSG---------------VTPSHIGGKERPGLVHRL 146
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSG++V+AK + +H L+ QFKLHTI RVY +L GVP + G IE+ I RD R
Sbjct: 147 DKETSGVMVIAKTDQAHRALAAQFKLHTITRVYEALIWGVPKKGHGLIELAIGRDTKERK 206
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +A + + + +A+ Y+V E G +A V TGRTHQ
Sbjct: 207 KFSA-----RTTKPKPSATDYQV-EERYGKIAAYVRLFPRTGRTHQ 246
>gi|337282172|ref|YP_004621643.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 15912]
gi|335369765|gb|AEH55715.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 15912]
Length = 296
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E++ + EAED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYTVKEGDIIQYEVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H +D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 106 VNALLYHI----------------KDL-------SGING-ELRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+E+ K R Y ++ G G IE PI R +R + A
Sbjct: 142 AKNDQAHVALAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R++V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFQVLERF--GNYTLVELQLETGRTHQ 229
>gi|423470106|ref|ZP_17446850.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-2]
gi|423558545|ref|ZP_17534847.1| RluA family pseudouridine synthase [Bacillus cereus MC67]
gi|401191813|gb|EJQ98835.1| RluA family pseudouridine synthase [Bacillus cereus MC67]
gi|402437358|gb|EJV69382.1| RluA family pseudouridine synthase [Bacillus cereus BAG6O-2]
Length = 302
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VKG D + TI E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTL
Sbjct: 53 NYKVKGNDEITVTIPEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDVAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|163941632|ref|YP_001646516.1| RluA family pseudouridine synthase [Bacillus weihenstephanensis
KBAB4]
gi|229013077|ref|ZP_04170242.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
DSM 2048]
gi|423489069|ref|ZP_17465751.1| RluA family pseudouridine synthase [Bacillus cereus BtB2-4]
gi|423494794|ref|ZP_17471438.1| RluA family pseudouridine synthase [Bacillus cereus CER057]
gi|423498414|ref|ZP_17475031.1| RluA family pseudouridine synthase [Bacillus cereus CER074]
gi|423598796|ref|ZP_17574796.1| RluA family pseudouridine synthase [Bacillus cereus VD078]
gi|423661268|ref|ZP_17636437.1| RluA family pseudouridine synthase [Bacillus cereus VDM022]
gi|423669467|ref|ZP_17644496.1| RluA family pseudouridine synthase [Bacillus cereus VDM034]
gi|423674354|ref|ZP_17649293.1| RluA family pseudouridine synthase [Bacillus cereus VDM062]
gi|163863829|gb|ABY44888.1| pseudouridine synthase, RluA family [Bacillus weihenstephanensis
KBAB4]
gi|228748331|gb|EEL98191.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
DSM 2048]
gi|401150887|gb|EJQ58339.1| RluA family pseudouridine synthase [Bacillus cereus CER057]
gi|401160463|gb|EJQ67841.1| RluA family pseudouridine synthase [Bacillus cereus CER074]
gi|401237066|gb|EJR43523.1| RluA family pseudouridine synthase [Bacillus cereus VD078]
gi|401298594|gb|EJS04194.1| RluA family pseudouridine synthase [Bacillus cereus VDM034]
gi|401301309|gb|EJS06898.1| RluA family pseudouridine synthase [Bacillus cereus VDM022]
gi|401309905|gb|EJS15238.1| RluA family pseudouridine synthase [Bacillus cereus VDM062]
gi|402432317|gb|EJV64376.1| RluA family pseudouridine synthase [Bacillus cereus BtB2-4]
Length = 302
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VKG D + TI E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTL
Sbjct: 53 NYKVKGNDEITVTIPEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGIIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|83859151|ref|ZP_00952672.1| ribosomal large subunit pseudouridine synthase d [Oceanicaulis sp.
HTCC2633]
gi|83852598|gb|EAP90451.1| ribosomal large subunit pseudouridine synthase d [Oceanicaulis
alexandrii HTCC2633]
Length = 310
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 116/202 (57%), Gaps = 36/202 (17%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDA 109
EDIPL++++EDD+++V+NKPA M VHPA GN TGTLV+ +L HC+
Sbjct: 56 EDIPLEVLFEDDHLIVINKPAGMAVHPAAGNWTGTLVHALLFHCA--------------- 100
Query: 110 EDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYI 169
S S G RPGIVHRLDK TSG++V AK + +H LS QF HT+ER Y+
Sbjct: 101 --------GSLSGIGGVERPGIVHRLDKDTSGVMVAAKTDKAHQGLSAQFAAHTVERAYL 152
Query: 170 SLTSGVPSQSSGRIEVPISRDPNNRIRMAAI--PGSNKHGQARHAASRYKVIEILAG--G 225
+ T P +GRIE ++R ++R +MA I PGS +HA + Y+ + G
Sbjct: 153 AFTRSAPQPRTGRIETRLARSSHDRKKMAVIDAPGSQA---GKHAITNYETLATFGQEPG 209
Query: 226 GS------ALVEWRLETGRTHQ 241
S ALV RLETGRTHQ
Sbjct: 210 KSVGHPMCALVRCRLETGRTHQ 231
>gi|336419601|ref|ZP_08599859.1| ribosomal large subunit pseudouridine synthase, RluA family
[Fusobacterium sp. 11_3_2]
gi|336163475|gb|EGN66399.1| ribosomal large subunit pseudouridine synthase, RluA family
[Fusobacterium sp. 11_3_2]
Length = 314
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 127/215 (59%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN
Sbjct: 60 LKLGEKIEVSIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGIVHRLDK TSGL++VAK
Sbjct: 120 LLYYTNNL-----------------------SSING-NIRPGIVHRLDKDTSGLILVAKS 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ SGRIE I RD +R +MA + +
Sbjct: 156 NYAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDSKDRKKMAVVKEN--- 212
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A S YKVIE + G +LVE +ETGRTHQ
Sbjct: 213 --GKIAISNYKVIEQV--DGYSLVEVAIETGRTHQ 243
>gi|407977667|ref|ZP_11158504.1| pseudouridylate synthase [Bacillus sp. HYC-10]
gi|407415920|gb|EKF37501.1| pseudouridylate synthase [Bacillus sp. HYC-10]
Length = 304
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 123/219 (56%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ V+ GD + I + + L EAE + LDI YED +VLVVNKP MVVHPAPG+ +
Sbjct: 49 VKANYKVQAGDQIKVEIPDPEALNVEAESMDLDIYYEDADVLVVNKPRGMVVHPAPGHVS 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHCN----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ G+ +G I+ PI RD +R M
Sbjct: 145 LMVAKNDLAHESLVNQLVAKTVTRKYTAVVHGIIQHDTGTIDAPIGRDKKDRQSMTVTKE 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A+ A + + VIE +VE RLETGRTHQ
Sbjct: 205 N-----AKQAVTHFDVIERFK--DFTVVECRLETGRTHQ 236
>gi|423522277|ref|ZP_17498750.1| RluA family pseudouridine synthase [Bacillus cereus HuA4-10]
gi|401174971|gb|EJQ82174.1| RluA family pseudouridine synthase [Bacillus cereus HuA4-10]
Length = 302
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 126/219 (57%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+
Sbjct: 50 VKVNYKVKENDEITVTIPEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTK 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 203 -DENG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|228909719|ref|ZP_04073542.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 200]
gi|228850008|gb|EEM94839.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 200]
Length = 302
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 127/219 (57%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKEEDEITVTIPEPEALDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 203 -DENG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|229162828|ref|ZP_04290785.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
R309803]
gi|228620710|gb|EEK77579.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
R309803]
Length = 302
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKANDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|440750371|ref|ZP_20929615.1| Ribosomal large subunit pseudouridine synthase D [Mariniradius
saccharolyticus AK6]
gi|436481412|gb|ELP37593.1| Ribosomal large subunit pseudouridine synthase D [Mariniradius
saccharolyticus AK6]
Length = 347
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 116/193 (60%), Gaps = 30/193 (15%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEAFSD 108
E IPLDIV+EDD +L++NKPA MVVHPA GN TGTLVNG++++ + LPTL
Sbjct: 95 EPIPLDIVFEDDYLLIINKPAGMVVHPAHGNWTGTLVNGLVYYFNQLPTL---------- 144
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
G + RPG+VHR+DK TSGLLV+AK E + L++QF H I+R Y
Sbjct: 145 --------------PGNTGRPGLVHRIDKDTSGLLVIAKSEAAMTDLAKQFFHHHIDRTY 190
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
I+L G P SG + + R P +R M + P + Q +HA + +KV++ L
Sbjct: 191 IALVWGEPEADSGTVRAHVGRSPKDRKVMESYPDGS---QGKHAVTHWKVLKRLR--YVT 245
Query: 229 LVEWRLETGRTHQ 241
L+E +LETGRTHQ
Sbjct: 246 LLECKLETGRTHQ 258
>gi|85704967|ref|ZP_01036067.1| ribosomal large subunit pseudouridine synthase D [Roseovarius sp.
217]
gi|85670289|gb|EAQ25150.1| ribosomal large subunit pseudouridine synthase D [Roseovarius sp.
217]
Length = 342
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 129/226 (57%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD++ + E + AE I L +VYEDD+++V+NKPA MVVHPAPG+ GTLVN
Sbjct: 59 RVTAGDLIEILVPEARESHISAEAIALTVVYEDDDLIVINKPAGMVVHPAPGSPEGTLVN 118
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC S S G S RPGIVHR+DK TSGLLVVAK
Sbjct: 119 ALLHHCG-----------------------DSLSGVGGSKRPGIVHRIDKDTSGLLVVAK 155
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE-VP-ISRDPNNRIRMA---AIPG 202
+ +H L+ QF+ H++ER Y ++ +GVP R+ +P IS + N +R+A A
Sbjct: 156 SDAAHQGLAAQFEAHSVERSYRAVVNGVPDAGDPRLRGLPGISFEAGNILRIATRLARHK 215
Query: 203 SNKHGQA------RHAASRYKVIEILAGGG-SALVEWRLETGRTHQ 241
+++ QA RHA +R +VIE G +L+E LETGRTHQ
Sbjct: 216 TDRQKQAVLFEGGRHAVTRARVIESFGTPGVVSLMECWLETGRTHQ 261
>gi|375088639|ref|ZP_09734977.1| RluA family pseudouridine synthase [Dolosigranulum pigrum ATCC
51524]
gi|374561604|gb|EHR32943.1| RluA family pseudouridine synthase [Dolosigranulum pigrum ATCC
51524]
Length = 303
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 134/243 (55%), Gaps = 35/243 (14%)
Query: 3 LVELEFNQVSVL----ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVY 58
+ E+ NQ+ L A+ ++ +K + V GD V TI E + + A+ ++IPL+IVY
Sbjct: 25 IAEVSRNQIQQLIAEGAVLVNGEKQLNKYKVASGDQVKITIPEPEEIEAKPQNIPLEIVY 84
Query: 59 EDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEF 118
ED+++ VVNKP MVVHPA G+ GTLVN +L+H L L+ N
Sbjct: 85 EDEDIAVVNKPQGMVVHPALGHPDGTLVNALLYH--LDNLSGIN---------------- 126
Query: 119 SSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQ 178
IRPGIVHR+DK TSGLL+VAK++ +H HLS Q K T +R YI+L G
Sbjct: 127 ------GKIRPGIVHRIDKDTSGLLMVAKNDQAHHHLSAQLKEKTSKREYIALVHGRIPH 180
Query: 179 SSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGR 238
I+ PI RDP++R + A + + A + + V++ + L+ +LETGR
Sbjct: 181 EKATIDAPIGRDPHDRKKYAVV------DDGKEAITHFNVLQRFKEDYT-LIACQLETGR 233
Query: 239 THQ 241
THQ
Sbjct: 234 THQ 236
>gi|229496851|ref|ZP_04390560.1| ribosomal large subunit pseudouridine synthase D [Porphyromonas
endodontalis ATCC 35406]
gi|229316262|gb|EEN82186.1| ribosomal large subunit pseudouridine synthase D [Porphyromonas
endodontalis ATCC 35406]
Length = 359
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 129/227 (56%), Gaps = 28/227 (12%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRA-EAEDIPLDIVYEDDNVLVVNKPAHMVV 74
LF+ + ++ V+ GD++ ++ R AEDIPL++VYED+++LVVNKPA MVV
Sbjct: 71 LFVGETPIKSNYKVRPGDVITLRLARPPHERGIVAEDIPLEVVYEDNDLLVVNKPAGMVV 130
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HP GN TGTLVN + ++ DD ++ ++ G+VHR
Sbjct: 131 HPGNGNYTGTLVNALAYY-------------------FRDDPKYDANDPNV----GLVHR 167
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLLVVAK + L +QF T ER Y +L G +S GRIE I RDP +R
Sbjct: 168 IDKDTSGLLVVAKRPEAKTALGKQFFEKTSERSYRALVWGAFKESEGRIEGNIGRDPRDR 227
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RM+ P ++ G ++A + Y+V+E A + +E RLETGRTHQ
Sbjct: 228 TRMSVFPPNSDEG--KNAITHYRVLETFA--FVSYIECRLETGRTHQ 270
>gi|49473932|ref|YP_031974.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana str. Toulouse]
gi|49239435|emb|CAF25784.1| Ribosomal large subunit pseudouridine synthase D [Bartonella
quintana str. Toulouse]
Length = 334
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 127/222 (57%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K M+ TI L+ + E I LDI++EDD+V+V+NK A +VVHP GN TGTLVN
Sbjct: 56 LKPNQMIELTIPILRDAKPSGEAIKLDILFEDDHVIVINKQAGLVVHPGNGNLTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+++HC + S I G RPGIVHRLDK TSG++VVAK+
Sbjct: 116 LIYHCG----------------------DSLSGIGGVK-RPGIVHRLDKNTSGIMVVAKN 152
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+ +H +LS QF H ++R Y +L G P+++ +I+ P+ R P+NR + A I N
Sbjct: 153 DLAHKNLSAQFSDHGRTSALDRRYHALIWGSPNRNVWKIDAPLGRSPHNRTKQAVIYSQN 212
Query: 205 KHGQARHAASRYKVIEILA-----GGGSALVEWRLETGRTHQ 241
H ARHA + + ++E ++L+E RLETGRTHQ
Sbjct: 213 PH--ARHAVTHFSLLEKYGICSDKTSFASLLECRLETGRTHQ 252
>gi|435853644|ref|YP_007314963.1| pseudouridine synthase, RluA family [Halobacteroides halobius DSM
5150]
gi|433670055|gb|AGB40870.1| pseudouridine synthase, RluA family [Halobacteroides halobius DSM
5150]
Length = 305
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 128/220 (58%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
++ S+ + GD V I E + L E +DIPL+I+Y+D++++V+NK +VVHPAPG+
Sbjct: 49 RIKKSYELVAGDNVKLIIPEPKELDLEPQDIPLNILYDDNDIIVINKQPDLVVHPAPGHE 108
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
+GTLVN +L+HC + S I+G IRPGIVHRLDK TSG
Sbjct: 109 SGTLVNALLYHC-----------------------DNLSGINGV-IRPGIVHRLDKDTSG 144
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
+VVAK++ +H L+ QFK +++Y +L G + G+++ I RDP +R +MA
Sbjct: 145 AMVVAKNDEAHIELARQFKERETKKIYTTLVYGRVRYNKGQVDAAIGRDPYDRKKMAVTS 204
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++K A S ++V + + LVE +LETGRTHQ
Sbjct: 205 KNSK-----KAISYFEVKKRYS--DYTLVEVKLETGRTHQ 237
>gi|336113719|ref|YP_004568486.1| RluA family pseudouridine synthase [Bacillus coagulans 2-6]
gi|335367149|gb|AEH53100.1| pseudouridine synthase, RluA family [Bacillus coagulans 2-6]
Length = 303
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 124/220 (56%), Gaps = 32/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K ++ + GD+V + E + E ED+ LDI YED +VLVVNKP MVVHP+ G+
Sbjct: 48 KEKANYRCQAGDLVEIEVPEPELPDIEPEDLHLDIYYEDADVLVVNKPKGMVVHPSNGHF 107
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
TGTLVNG+++HC +D+S I+G +RPGIVHR+DK TSG
Sbjct: 108 TGTLVNGLMYHC----------------KDLS-------GINGV-LRPGIVHRIDKDTSG 143
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL+VAK++++H L+ Q T+ R Y +L G +G I+ PI RDP +R RMA +
Sbjct: 144 LLMVAKNDYAHEKLAAQLSEKTVTRKYFALVHGNIPHEAGTIDAPIGRDPADRQRMAVV- 202
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + + V+E +E RLETGRTHQ
Sbjct: 203 -----DNGKDAVTHFHVLERF--DRYTFIECRLETGRTHQ 235
>gi|218245618|ref|YP_002370989.1| RluA family pseudouridine synthase [Cyanothece sp. PCC 8801]
gi|218166096|gb|ACK64833.1| pseudouridine synthase, RluA family [Cyanothece sp. PCC 8801]
Length = 318
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 113/193 (58%), Gaps = 32/193 (16%)
Query: 52 IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAED 111
IPLDI+YEDD+++++NK A +VVHPAPG+ +GTLV+G+L+HC P L
Sbjct: 84 IPLDILYEDDSLIIINKSAGLVVHPAPGHTSGTLVHGLLYHC--PNLVG----------- 130
Query: 112 ISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISL 171
G RPGIVHRLDK T+G +VVAK +++H HL Q K T R Y+ +
Sbjct: 131 -----------IGGVQRPGIVHRLDKDTTGAIVVAKTDYAHQHLQAQLKAKTARREYLGV 179
Query: 172 TSGVPSQS---SGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
GVP G I VPI R +R +MA +P N R A + ++++E L G
Sbjct: 180 VYGVPRHKDTHQGTINVPIGRHRGDRKKMAVVPVENG---GREAITHWQIVERL--GNYT 234
Query: 229 LVEWRLETGRTHQ 241
LVE+RLETGRTHQ
Sbjct: 235 LVEFRLETGRTHQ 247
>gi|452974551|gb|EME74371.1| RNA-pseudouridine synthase YlyB [Bacillus sonorensis L12]
Length = 304
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 122/219 (55%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ V+ GD+V + E +PL AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKVQPGDVVIVDVPEPEPLDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC DD S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHC--------------------DD---LSGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y +L GV G I+ PI RD +R M
Sbjct: 145 LMVAKNDMAHESLVNQLVKKTVTRKYTALVHGVIPHDHGTIDAPIGRDKKDRQSMTVTRE 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ K HA + ++V E +VE RLETGRTHQ
Sbjct: 205 NGK-----HAVTHFEVKERF--DDFTVVECRLETGRTHQ 236
>gi|329769635|ref|ZP_08261039.1| hypothetical protein HMPREF0433_00803 [Gemella sanguinis M325]
gi|328838390|gb|EGF87999.1| hypothetical protein HMPREF0433_00803 [Gemella sanguinis M325]
Length = 299
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 123/219 (56%), Gaps = 33/219 (15%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ +K +++ E + L +DIP+DIVYED+++L+VNKP MVVHP+ G+
Sbjct: 48 VKTNYKLKESNVITIDYKEPEELDVVKQDIPVDIVYEDNDLLIVNKPKGMVVHPSAGHKD 107
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC L SSI+G +IRPGIVHR+DK TSGL
Sbjct: 108 GTLVNALLYHCEL------------------------SSING-TIRPGIVHRIDKDTSGL 142
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H LSE ++R Y +L G G I+ PI+R+P R MA I
Sbjct: 143 LIVAKNDKAHVKLSEMIANKEVKRKYYALVHGSIKHDYGTIDAPIARNPKERKEMAVI-- 200
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + + + +KVI+ L+E LETGRTHQ
Sbjct: 201 ----DEGKPSITHFKVIDRFE--KYTLIECELETGRTHQ 233
>gi|320528439|ref|ZP_08029601.1| pseudouridine synthase, RluA family [Solobacterium moorei F0204]
gi|320131353|gb|EFW23921.1| pseudouridine synthase, RluA family [Solobacterium moorei F0204]
Length = 304
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 133/242 (54%), Gaps = 37/242 (15%)
Query: 5 ELEFNQVSVLA----LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYED 60
EL +V LA +F++ S V GD ++C + E +P+ E+IPLDI+YED
Sbjct: 25 ELSRTRVQQLADDGMIFVNGKVAKSSSKVVTGDEISCDVPEDRPVDILPENIPLDILYED 84
Query: 61 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSS 120
+++V+NKP MVVHPAPGN + T+VN +L+HC +D+ S
Sbjct: 85 HDIIVINKPKGMVVHPAPGNYSNTMVNALLYHC----------------KDL-------S 121
Query: 121 SISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS 180
I+G IRPGIVHR+DK T+G +V K++ +H +++Q + T RVY ++ G +
Sbjct: 122 GINGV-IRPGIVHRIDKDTTGCIVACKNDKAHEAIAKQLENKTCHRVYKTIVVGNITHDD 180
Query: 181 GRIEVPISRDPNNRIRMAAIPGSNKHGQAR-HAASRYKVIEILAGGGSALVEWRLETGRT 239
G I+ PI RDP +R RM +++ + H R+ V + +E RLETGRT
Sbjct: 181 GLIDAPIGRDPRDRQRMKVTEENSRDARTHFHVLERFNV--------ATYLECRLETGRT 232
Query: 240 HQ 241
HQ
Sbjct: 233 HQ 234
>gi|418275350|ref|ZP_12890673.1| RNA pseudouridylate synthase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|376008901|gb|EHS82230.1| RNA pseudouridylate synthase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 307
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 120/216 (55%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++VK GD + +Q E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TL
Sbjct: 54 KYHVKPGDEIVVDAQTVQQTTIEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H L S+I+G RPGIVHR+DK TSGLL+V
Sbjct: 114 VNALLYHSPL------------------------STING-EFRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K T R Y++L GV + +G I P+ R P +R + A +
Sbjct: 149 AKNDRAHQSLAAQLKAKTNLREYVALVHGVIKEDTGTINAPLGRSPKDRKKQAIV----- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV++ L+ RLETGRTHQ
Sbjct: 204 -KTGRPAVTHFKVLKRYQ--HYTLISCRLETGRTHQ 236
>gi|295109999|emb|CBL23952.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus
obeum A2-162]
Length = 304
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 121/219 (55%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD + I + + E+IPLDI+YEDD VLVVNKP MVVHP+ G+ +
Sbjct: 49 IKANYKTQSGDYIEFHIPDPEVPDILPENIPLDILYEDDYVLVVNKPKDMVVHPSAGHTS 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN ++ HC E S I+G +RPGIVHR+DK T+G
Sbjct: 109 GTLVNAVMAHCG----------------------EHLSGINGV-LRPGIVHRIDKDTTGA 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L++ KD+ H L+EQ K H+I+R Y ++ G + G + P+ R P +R +MA
Sbjct: 146 LLICKDDVVHRDLAEQLKEHSIKRRYRAVVQGNLKEDEGTVNAPVGRHPTDRKKMAI--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H + A + YKV+E G + +E RLETGRTHQ
Sbjct: 203 --NHKNGKEAITHYKVLERF--GQATYIECRLETGRTHQ 237
>gi|196038675|ref|ZP_03105983.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
gi|196030398|gb|EDX68997.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus NVH0597-99]
Length = 302
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVRENDEITVTIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVIRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|167755826|ref|ZP_02427953.1| hypothetical protein CLORAM_01342 [Clostridium ramosum DSM 1402]
gi|365831520|ref|ZP_09373072.1| RluA family pseudouridine synthase [Coprobacillus sp. 3_3_56FAA]
gi|374625135|ref|ZP_09697552.1| RluA family pseudouridine synthase [Coprobacillus sp. 8_2_54BFAA]
gi|167704765|gb|EDS19344.1| pseudouridine synthase, RluA family [Clostridium ramosum DSM 1402]
gi|365261997|gb|EHM91898.1| RluA family pseudouridine synthase [Coprobacillus sp. 3_3_56FAA]
gi|373916418|gb|EHQ48166.1| RluA family pseudouridine synthase [Coprobacillus sp. 8_2_54BFAA]
Length = 306
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 138/245 (56%), Gaps = 35/245 (14%)
Query: 1 MELVELEFNQVSVLA----LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDI 56
M+L EL Q+ + + ++ K S+ K D + TI + L E EDI L I
Sbjct: 22 MQLQELSRTQIQDMINQGLVLVNQKKEKASYKTKLNDEIEITILDNVDLDIEPEDISLKI 81
Query: 57 VYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDE 116
VYED++V+VV+KP M+VHP+ G GTLVN +L HC +D+S
Sbjct: 82 VYEDEDVIVVDKPTGMIVHPSAGIMHGTLVNALLFHC----------------KDLS--- 122
Query: 117 EFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVP 176
I+G + RPGIVHR+DK TSGLL+VAK++++H LS+Q K HT+ R Y++L G+
Sbjct: 123 ----GINGVN-RPGIVHRIDKETSGLLMVAKNDNAHRLLSKQLKDHTVVRRYVALVHGLI 177
Query: 177 SQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLET 236
G+++ PI R+P +R MA ++K A + + V++ +L+E RLET
Sbjct: 178 PHEHGKVDAPIGRNPKDRQSMAVTRTNSK-----EAVTNFTVLK--RYNAMSLIECRLET 230
Query: 237 GRTHQ 241
GRTHQ
Sbjct: 231 GRTHQ 235
>gi|336236130|ref|YP_004588746.1| RluA family pseudouridine synthase [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720663|ref|ZP_17694845.1| pseudouridine synthase, rluA family [Geobacillus thermoglucosidans
TNO-09.020]
gi|335362985|gb|AEH48665.1| pseudouridine synthase, RluA family [Geobacillus
thermoglucosidasius C56-YS93]
gi|383366016|gb|EID43307.1| pseudouridine synthase, rluA family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 304
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 122/219 (55%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ GD+V + E +PL E E+IPLDI YED +VLVVNKP MVVHPAPG+
Sbjct: 49 VKANYKCSAGDIVVVRLPEPEPLYVEPENIPLDIYYEDADVLVVNKPRGMVVHPAPGHMR 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L HC D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNALLAHC----------------HDL-------SGINGV-LRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L +Q T+ R Y ++ GV G I+ PI RD +R +MA
Sbjct: 145 LMVAKNDMAHQALVDQLVKKTVTRKYKAIVHGVIPHDYGTIDAPIGRDKRDRKKMAVTEE 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ K A + ++V+E +E +LETGRTHQ
Sbjct: 205 NGK-----EAVTHFRVLERFR--QYTFIECQLETGRTHQ 236
>gi|291459221|ref|ZP_06598611.1| ribosomal large subunit pseudouridine synthase D [Oribacterium sp.
oral taxon 078 str. F0262]
gi|291418475|gb|EFE92194.1| ribosomal large subunit pseudouridine synthase D [Oribacterium sp.
oral taxon 078 str. F0262]
Length = 308
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 123/216 (56%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S ++GG+ ++ E +P AE+IPLDIVYED +L+VNKP MVVHPAPG++ GTL
Sbjct: 54 SKRLRGGEQISICFPEEKPTEIRAEEIPLDIVYEDSELLLVNKPKGMVVHPAPGHSGGTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L P L SSI+G +RPGIVHR+D+ T+GLL+V
Sbjct: 114 VNALLGRPG-PEL---------------------SSINGV-LRPGIVHRIDRDTTGLLLV 150
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
K + +H L+EQ K HTI R Y ++ G + G+++ PI R +R + A
Sbjct: 151 CKKDRAHRALAEQLKEHTITRRYHAILCGRMREDEGKVDAPIGRSRRDRKKQAI-----D 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R A + Y+V+E + LVE RLETGRTHQ
Sbjct: 206 WERGREAVTHYRVLERFS--EYTLVECRLETGRTHQ 239
>gi|254556664|ref|YP_003063081.1| pseudouridylate synthase [Lactobacillus plantarum JDM1]
gi|254045591|gb|ACT62384.1| pseudouridylate synthase [Lactobacillus plantarum JDM1]
Length = 307
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 120/216 (55%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++VK GD + +Q E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TL
Sbjct: 54 KYHVKPGDEIVVAAQTVQQTTIEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPNHTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H L S+I+G RPGIVHR+DK TSGLL+V
Sbjct: 114 VNALLYHSPL------------------------STING-EFRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K T R Y++L GV + +G I P+ R P +R + A +
Sbjct: 149 AKNDRAHQSLAAQLKAKTNLREYVALVHGVIKEDTGTINAPLGRSPKDRKKQAIV----- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV++ L+ RLETGRTHQ
Sbjct: 204 -KTGRPAITHFKVLKRYQ--HYTLISCRLETGRTHQ 236
>gi|322389731|ref|ZP_08063278.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 903]
gi|321143570|gb|EFX39001.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
parasanguinis ATCC 903]
Length = 296
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E++ + EAED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYTVKEGDIIQYEVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H +D+ S I+G +RPGIVHR+DK TSGLL++
Sbjct: 106 VNALLYHV----------------KDL-------SGING-ELRPGIVHRIDKDTSGLLMI 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+E+ K R Y ++ G G IE PI R +R + A
Sbjct: 142 AKNDQAHVALAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R++V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFQVLERF--GNYTLVELQLETGRTHQ 229
>gi|330718578|ref|ZP_08313178.1| pseudouridylate synthase, 23S RNA-specific [Leuconostoc fallax KCTC
3537]
Length = 258
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 126/216 (58%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V GD++ T ++Q E E IPL+IVYEDD++LVVNKP MVVHP+ G+++GTL
Sbjct: 4 SYKVNKGDIIVITPPKVQATTIEPEAIPLNIVYEDDDLLVVNKPQGMVVHPSAGHSSGTL 63
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHH L S+I+G RPGIVHR+D+ TSGLL+V
Sbjct: 64 VNALLHHAPL------------------------STING-EFRPGIVHRIDRDTSGLLMV 98
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K H +R+Y +L G ++SG + PI+R +R + A +
Sbjct: 99 AKNDTAHQALSAQLKAHKNQRIYYALVRGEFKENSGTVNAPIARHKIDRKKQAIV----- 153
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V++ G L++ RLETGRTHQ
Sbjct: 154 -SDGKPAVTHFEVVQRYV--GYTLLKVRLETGRTHQ 186
>gi|163755786|ref|ZP_02162904.1| ribosomal large subunit pseudouridine synthase D [Kordia algicida
OT-1]
gi|161324307|gb|EDP95638.1| ribosomal large subunit pseudouridine synthase D [Kordia algicida
OT-1]
Length = 346
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 128/228 (56%), Gaps = 31/228 (13%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISE--LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMV 73
+F++ + ++ VKG D++ + + L EDIP+DIVYEDD++LVVNKPA MV
Sbjct: 58 IFVNGKPVKSNYKVKGNDVIKVLFAHPPYENLLV-GEDIPIDIVYEDDDLLVVNKPAGMV 116
Query: 74 VHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 133
VHP GN +GTL+N +++H F + ++ RPG+VH
Sbjct: 117 VHPGHGNYSGTLINALIYH-------------------------FDNLPKNSNERPGLVH 151
Query: 134 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN 193
R+DK TSGLLVVAK E + HL++QF T ER+Y +L G + G +E I R P N
Sbjct: 152 RIDKDTSGLLVVAKTEEAMTHLAKQFFDKTSERIYYALVWGNVEEDEGTVEGNIGRHPKN 211
Query: 194 RIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R++ G + + + A + YKV+E L G LV +LETGRTHQ
Sbjct: 212 RLQNTVFFGEDA-DKGKPAVTHYKVLERL--GYVTLVSCQLETGRTHQ 256
>gi|423321680|ref|ZP_17299551.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB077-07]
gi|405591797|gb|EKB65265.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB077-07]
Length = 303
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 123/218 (56%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ ++ GD + I ++PL E+IPLDIVYEDD+V+VVNKP MVVHPAPG+
Sbjct: 49 KVSYKIQAGDKIEVNIPAVKPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H LA S + RPGIVHR+DK TSGLL
Sbjct: 109 TLVNALLYHTK--ALAQSPE----------------------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK + L +Q T +R+Y ++ G ++ +G I+ PI R+P +R +MA +
Sbjct: 145 MIAKTAKARESLEDQLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDRKKMAVVETG 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV+E +L+E +LETGRTHQ
Sbjct: 205 KK------AITHFKVLEQFK--DYSLIECQLETGRTHQ 234
>gi|336172856|ref|YP_004579994.1| RluA family pseudouridine synthase [Lacinutrix sp. 5H-3-7-4]
gi|334727428|gb|AEH01566.1| pseudouridine synthase, RluA family [Lacinutrix sp. 5H-3-7-4]
Length = 345
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/193 (45%), Positives = 113/193 (58%), Gaps = 28/193 (14%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 108
ED+PLDIVYEDD +LVVNKPA MVVHP GN +GTL+N +++H
Sbjct: 91 GEDLPLDIVYEDDTLLVVNKPAGMVVHPGHGNYSGTLINALIYH---------------- 134
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
F + +S RPG+VHR+DK TSGLLVVAK EH+ AHLS+QFK T ER Y
Sbjct: 135 ---------FDNLPKNSSDRPGLVHRIDKDTSGLLVVAKTEHAMAHLSKQFKDKTSEREY 185
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
+++ G + G IE I R P NR++ + + + + A + YKV+E L
Sbjct: 186 VAIVWGNMEEDEGTIEGNIGRHPKNRLQ-NTVYMDDDADKGKPAVTHYKVLERLT--YVT 242
Query: 229 LVEWRLETGRTHQ 241
LV +LETGRTHQ
Sbjct: 243 LVSCKLETGRTHQ 255
>gi|421144716|ref|ZP_15604623.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
gi|395488855|gb|EJG09703.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. fusiforme ATCC 51190]
Length = 314
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 128/215 (59%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I + + + EAE+I LDIVYE+D+ +V+NK MVVHPA GN +GTLVN
Sbjct: 60 LKLGEKIEVSIPKEENIDIEAENISLDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGI+HRLDK TSGL++VAK+
Sbjct: 120 LLYYTNNL-----------------------SSING-NIRPGIIHRLDKDTSGLILVAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ +GRIE I RD +R +MA + + K
Sbjct: 156 NYAHAKLASMFTDKTIHKTYLCIVKGNFSEENLNGRIENLIGRDSKDRKKMAVVKENGK- 214
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S YKVIE + G +LVE +ETGRTHQ
Sbjct: 215 ----TAISNYKVIEQV--DGYSLVEIAIETGRTHQ 243
>gi|237740892|ref|ZP_04571373.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
4_1_13]
gi|229431189|gb|EEO41401.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
4_1_13]
Length = 314
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 128/215 (59%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I + + + EAE+I LDIVYE+D+ +V+NK MVVHPA GN +GTLVN
Sbjct: 60 LKLGEKIEVSIPKEENIDIEAENISLDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGI+HRLDK TSGL++VAK+
Sbjct: 120 LLYYTNNL-----------------------SSING-NIRPGIIHRLDKDTSGLILVAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ +GRIE I RD +R +MA + + K
Sbjct: 156 NYAHAKLASMFTDKTIHKTYLCIVKGNFSEENLNGRIENLIGRDSKDRKKMAVVKENGK- 214
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S YKVIE + G +LVE +ETGRTHQ
Sbjct: 215 ----TAISNYKVIEQV--DGYSLVEIAIETGRTHQ 243
>gi|347750588|ref|YP_004858153.1| RluA family pseudouridine synthase [Bacillus coagulans 36D1]
gi|347583106|gb|AEO99372.1| pseudouridine synthase, RluA family [Bacillus coagulans 36D1]
Length = 303
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 125/220 (56%), Gaps = 32/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K ++ ++ GD+V + E + E ED+ LDI YED +VLVVNKP MVVHP+ G+
Sbjct: 48 KEKANYRLQTGDLVEIEVPEPELPDIEPEDLHLDIYYEDADVLVVNKPKGMVVHPSNGHF 107
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
TGTLVNG+++HC +D+S I+G +RPGIVHR+DK TSG
Sbjct: 108 TGTLVNGLMYHC----------------KDLS-------GINGV-LRPGIVHRIDKDTSG 143
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL+VAK++++H L+ Q T+ R Y +L G +G I+ PI RDP +R RMA +
Sbjct: 144 LLMVAKNDYAHEKLAAQLSEKTVTRKYFALVHGNIPHEAGTIDAPIGRDPADRQRMAVV- 202
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + + V+E +E RLETGRTHQ
Sbjct: 203 -----DNGKDAVTHFHVLERF--DRYTFIECRLETGRTHQ 235
>gi|452992514|emb|CCQ96045.1| pseudouridylate synthase [Clostridium ultunense Esp]
Length = 305
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 120/215 (55%), Gaps = 31/215 (14%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ VK GD + + E + E++PLDI+YED ++++VNKP MVVHPAPGN TGTLV
Sbjct: 52 YRVKIGDYIQIKLPEQEQEEPIPENLPLDIIYEDKDIVIVNKPEDMVVHPAPGNPTGTLV 111
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N +L+H ++ +DI IRPGIVHRLDK TSGLL VA
Sbjct: 112 NALLYHV----------DSLYSGKDI--------------IRPGIVHRLDKDTSGLLAVA 147
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K+E ++ L +Q K ++ERVY +L GV + G I VPI R P +R RM +
Sbjct: 148 KNEIAYNSLIQQLKNRSMERVYEALVYGVLNSDEGTINVPIGRHPVDRKRMTV-----RK 202
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + +K +E L+E LETGRTHQ
Sbjct: 203 ENGKEAITHFKALEKFQ--DYTLLEASLETGRTHQ 235
>gi|423138224|ref|ZP_17125867.1| RluA family pseudouridine synthase [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371958262|gb|EHO75981.1| RluA family pseudouridine synthase [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 328
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 127/215 (59%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN
Sbjct: 60 LKLGEKIEVSIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 120 LLYYTNNL-----------------------SSING-NIRPGIIHRLDKNTSGLILVAKS 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ SGRIE I RD +R +MA + +
Sbjct: 156 NYAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDSKDRKKMAVVKEN--- 212
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A S YKV+E + G +LVE +ETGRTHQ
Sbjct: 213 --GKIAISNYKVVEQVE--GYSLVEVAIETGRTHQ 243
>gi|359788929|ref|ZP_09291894.1| pseudouridine synthase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255234|gb|EHK58162.1| pseudouridine synthase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 331
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/202 (44%), Positives = 115/202 (56%), Gaps = 35/202 (17%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 108
EDIPLDI++EDD ++V+NKP +VVHP GN TGTLVN ++HHC
Sbjct: 75 GEDIPLDILFEDDQLIVLNKPPGLVVHPGAGNWTGTLVNALIHHCG-------------- 120
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----TI 164
+ S I G RPGIVHRLDK TSG++VVAK + +H LSE F H +
Sbjct: 121 --------DSLSGIGGVR-RPGIVHRLDKDTSGVMVVAKTDRAHQALSEAFADHGRASDL 171
Query: 165 ERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAG 224
ER YI+L +P + +G I+ P+ R ++R R A +P ARHA + Y V+E
Sbjct: 172 ERAYIALVWNIPQRRAGTIDAPLGR-ASDRTRRAVVPEGRD--DARHAVTHYAVLERFGE 228
Query: 225 -----GGSALVEWRLETGRTHQ 241
+ALVE RLETGRTHQ
Sbjct: 229 KQEEFARAALVECRLETGRTHQ 250
>gi|374324826|ref|YP_005077955.1| RNA pseudouridine synthase ylyb [Paenibacillus terrae HPL-003]
gi|357203835|gb|AET61732.1| RNA pseudouridine synthase ylyb [Paenibacillus terrae HPL-003]
Length = 323
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 132/219 (60%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD ++ ++ E + + E+IPLD+VYED +V+V+NK +VVHPAPG+++
Sbjct: 69 IKANYKLAEGDRISLSVPEPESVDIVPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHSS 128
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +++HC D+S I+G +RPGIVHR+DK TSGL
Sbjct: 129 GTLVNALMYHC----------------HDLS-------GING-ELRPGIVHRIDKDTSGL 164
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+ AK++ +HA L+ Q K H++ R YI+L G S G ++ PI RD +R ++ +
Sbjct: 165 LMAAKNDQAHASLAAQLKDHSVTRKYIALVHGHLSHDQGTVDAPIGRDSGDR-KLFTVTE 223
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N ++HA + + VIE L G L+E +LETGRTHQ
Sbjct: 224 RN----SKHAVTHFLVIERL--GDYTLLELQLETGRTHQ 256
>gi|332292606|ref|YP_004431215.1| RluA family pseudouridine synthase [Krokinobacter sp. 4H-3-7-5]
gi|332170692|gb|AEE19947.1| pseudouridine synthase, RluA family [Krokinobacter sp. 4H-3-7-5]
Length = 347
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 122/219 (55%), Gaps = 33/219 (15%)
Query: 26 SHNVKGGDMVNCTISELQP--LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK GD+V E P EDI +D+VYEDD ++VVNKPA MVVHP GN +G
Sbjct: 68 NYKVKAGDVVRAMF-EHPPHEFLLTPEDIDIDVVYEDDQLMVVNKPAGMVVHPGHGNYSG 126
Query: 84 TLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TL+N ++HH +LP + +S RPG+VHR+DK TSGL
Sbjct: 127 TLINALIHHVDNLP--------------------------NNSSDRPGLVHRIDKDTSGL 160
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK E + HLS+QF T ER Y+++ G G IE I R P NR++ G
Sbjct: 161 LVVAKTEQAMTHLSKQFFNKTTEREYVAIVWGNVVDDEGTIEGNIGRHPKNRLQNTVFYG 220
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ Q + A + YKVIE L G LV +LETGRTHQ
Sbjct: 221 EDE-DQGKPAVTHYKVIERL--GYVTLVSCKLETGRTHQ 256
>gi|227878615|ref|ZP_03996537.1| pseudouridylate synthase [Lactobacillus crispatus JV-V01]
gi|256843219|ref|ZP_05548707.1| pseudouridine synthase [Lactobacillus crispatus 125-2-CHN]
gi|256850423|ref|ZP_05555851.1| pseudouridine synthase [Lactobacillus crispatus MV-1A-US]
gi|293380626|ref|ZP_06626679.1| pseudouridine synthase, RluA family [Lactobacillus crispatus 214-1]
gi|295692991|ref|YP_003601601.1| pseudouridine synthase [Lactobacillus crispatus ST1]
gi|312977447|ref|ZP_07789195.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
crispatus CTV-05]
gi|423318686|ref|ZP_17296563.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB049-03]
gi|227861792|gb|EEJ69389.1| pseudouridylate synthase [Lactobacillus crispatus JV-V01]
gi|256614639|gb|EEU19840.1| pseudouridine synthase [Lactobacillus crispatus 125-2-CHN]
gi|256712820|gb|EEU27813.1| pseudouridine synthase [Lactobacillus crispatus MV-1A-US]
gi|290922813|gb|EFD99762.1| pseudouridine synthase, RluA family [Lactobacillus crispatus 214-1]
gi|295031097|emb|CBL50576.1| Pseudouridine synthase [Lactobacillus crispatus ST1]
gi|310895878|gb|EFQ44944.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
crispatus CTV-05]
gi|405593417|gb|EKB66865.1| RluA family pseudouridine synthase [Lactobacillus crispatus
FB049-03]
Length = 303
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 123/218 (56%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ ++ GD + I ++PL E+IPLDIVYEDD+V+VVNKP MVVHPAPG+
Sbjct: 49 KVSYKIQAGDKIEVNIPAVKPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H LA S + RPGIVHR+DK TSGLL
Sbjct: 109 TLVNALLYHTK--ALAQSPE----------------------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK + L +Q T +R+Y ++ G ++ +G I+ PI R+P +R +MA +
Sbjct: 145 MIAKTAKARESLEDQLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDRKKMAVVETG 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV+E +L+E +LETGRTHQ
Sbjct: 205 KK------AITHFKVLEQFK--DYSLIECQLETGRTHQ 234
>gi|223939777|ref|ZP_03631648.1| pseudouridine synthase, RluA family [bacterium Ellin514]
gi|223891553|gb|EEF58043.1| pseudouridine synthase, RluA family [bacterium Ellin514]
Length = 318
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 122/216 (56%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+H+ + G+++ E +P A EDIPLDI++ED ++LV+NK +VVHPA G+ TL
Sbjct: 55 THHPRAGELIEVYWPEARPAEARPEDIPLDIIFEDSDLLVLNKAPGLVVHPAAGHEEHTL 114
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHHC E S I G + RPGIVHRLDK TSG LVV
Sbjct: 115 VNALLHHC----------------------EGQLSGIGGVA-RPGIVHRLDKETSGCLVV 151
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQF T+E+ Y+++ G ++SG I I+R P +R RM GS
Sbjct: 152 AKNDAAHMALAEQFSGRTLEKTYLAIVCGEVVRNSGEIRASIARHPTHRKRMTVTDGSG- 210
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + YKV E + G+ +E L TGRTHQ
Sbjct: 211 ----REAWTSYKVRERFS--GATWLEALLHTGRTHQ 240
>gi|256846833|ref|ZP_05552288.1| pseudouridylate synthase [Fusobacterium sp. 3_1_36A2]
gi|256717799|gb|EEU31357.1| pseudouridylate synthase [Fusobacterium sp. 3_1_36A2]
Length = 316
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 128/215 (59%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I + + + EAE+I LDIVYE+D+ +V+NK MVVHPA GN +GTLVN
Sbjct: 60 LKLGEKIEVSIPKEENIDIEAENISLDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGI+HRLDK TSGL++VAK+
Sbjct: 120 LLYYTNNL-----------------------SSING-NIRPGIIHRLDKDTSGLILVAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ +GRIE I RD +R +MA + + K
Sbjct: 156 NYAHAKLASMFTDKTIHKTYLCIVKGNFSEENLNGRIENLIGRDSKDRKKMAVVKENGK- 214
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S YKVIE + G +LVE +ETGRTHQ
Sbjct: 215 ----TAISNYKVIEQV--DGYSLVEIAIETGRTHQ 243
>gi|333398717|ref|ZP_08480530.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
gelidum KCTC 3527]
gi|406599741|ref|YP_006745087.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
gelidum JB7]
gi|406371276|gb|AFS40201.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
gelidum JB7]
Length = 308
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 123/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD ++ + AEDIPL+I+YEDD++LVV+KP MVVHPA G++TGTL
Sbjct: 51 AYKVTAGDTISIIPPAVTTTEIIAEDIPLEIIYEDDDILVVDKPQGMVVHPAVGHSTGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L H L T+ + EF RPGIVHR+D+ TSGLL+V
Sbjct: 111 VNALLFHAPLSTI----------------NGEF---------RPGIVHRIDRDTSGLLMV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K H +R+Y +L G ++SG I PISR +R + A G
Sbjct: 146 AKNDQAHQGLSAQLKAHKNDRIYYALVRGEFVENSGTINAPISRHKVDRKKQAVQEG--- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++VIE G L++ RLETGRTHQ
Sbjct: 203 ---GREAITHFEVIERYV--GYTLLKVRLETGRTHQ 233
>gi|229168633|ref|ZP_04296355.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH621]
gi|228614789|gb|EEK71892.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH621]
Length = 302
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VKG D + TI E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTL
Sbjct: 53 NYKVKGNDEITVTIPEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVEKTVTRRYKAIVHGVIPHDKGIIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|312111747|ref|YP_003990063.1| pseudouridine synthase [Geobacillus sp. Y4.1MC1]
gi|311216848|gb|ADP75452.1| pseudouridine synthase, RluA family [Geobacillus sp. Y4.1MC1]
Length = 304
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 122/219 (55%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ GD+V + E +PL E E+IPLDI YED +VLVVNKP MVVHPAPG+
Sbjct: 49 VKANYKCSAGDIVVVRLPEPEPLYVEPENIPLDIYYEDADVLVVNKPRGMVVHPAPGHMR 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L HC D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNALLAHC----------------HDL-------SGINGV-LRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L +Q T+ R Y ++ GV G I+ PI RD +R +MA
Sbjct: 145 LMVAKNDMAHQALVDQLVKKTVTRKYKAIVHGVIPHDYGTIDAPIGRDKRDRKKMAVTEE 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ K A + ++V+E +E +LETGRTHQ
Sbjct: 205 NGK-----EAVTHFRVLERFR--QYTFIECQLETGRTHQ 236
>gi|336400257|ref|ZP_08581042.1| hypothetical protein HMPREF0404_00333 [Fusobacterium sp. 21_1A]
gi|336162907|gb|EGN65851.1| hypothetical protein HMPREF0404_00333 [Fusobacterium sp. 21_1A]
Length = 328
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 127/215 (59%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN
Sbjct: 60 LKLGEKIEVSIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 120 LLYYTNNL-----------------------SSING-NIRPGIIHRLDKDTSGLILVAKS 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ SGRIE I RD +R +MA + +
Sbjct: 156 NYAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDSKDRKKMAVVKEN--- 212
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A S YKV+E + G +LVE +ETGRTHQ
Sbjct: 213 --GKIAISNYKVVEQVE--GYSLVEVAIETGRTHQ 243
>gi|262046428|ref|ZP_06019390.1| pseudouridine synthase [Lactobacillus crispatus MV-3A-US]
gi|260573299|gb|EEX29857.1| pseudouridine synthase [Lactobacillus crispatus MV-3A-US]
Length = 303
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 123/218 (56%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ ++ GD + I ++PL E+IPLDIVYEDD+V+VVNKP MVVHPAPG+
Sbjct: 49 KVSYKIQAGDKIEVNIPAVKPLDVIPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H LA S + RPGIVHR+DK TSGLL
Sbjct: 109 TLVNALLYHSK--ALAQSPE----------------------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK + L +Q T +R+Y ++ G ++ +G I+ PI R+P +R +MA +
Sbjct: 145 MIAKTAKARESLEDQLAHKTNKRLYWAIVHGNFAEENGVIDAPIGRNPYDRKKMAVVETG 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV+E +L+E +LETGRTHQ
Sbjct: 205 KK------AITHFKVLEQFK--DYSLIECQLETGRTHQ 234
>gi|395786921|ref|ZP_10466648.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|423718160|ref|ZP_17692350.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
gi|395423219|gb|EJF89415.1| RluA family pseudouridine synthase [Bartonella tamiae Th239]
gi|395426593|gb|EJF92720.1| RluA family pseudouridine synthase [Bartonella tamiae Th307]
Length = 341
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 127/222 (57%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
++GG+ + + L + E+IPLDI+YED++++VVNKPA +VVHP GN TGT+VN
Sbjct: 63 LRGGENIQLNLPPLLDAEPQGENIPLDILYEDNDIIVVNKPAGLVVHPGNGNTTGTMVNA 122
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
++ HC S S G RPGIVHRLDK TSG++VVAK+
Sbjct: 123 LIFHCG-----------------------HSLSGIGGVKRPGIVHRLDKDTSGVMVVAKN 159
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+++H +LSEQF H ++R Y +L G + GRIE + R ++R R A + S+
Sbjct: 160 DNAHKNLSEQFADHGRSGALKRQYHALIWGTLERGRGRIETHLGRSQSDRTRQAVV--SS 217
Query: 205 KHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
AR+A + + ++E A ++LVE +LETGRTHQ
Sbjct: 218 TRSDARYAVTHFHILEKFGTKNDATAVASLVECQLETGRTHQ 259
>gi|153810897|ref|ZP_01963565.1| hypothetical protein RUMOBE_01281 [Ruminococcus obeum ATCC 29174]
gi|149833293|gb|EDM88375.1| pseudouridine synthase, RluA family [Ruminococcus obeum ATCC 29174]
Length = 304
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 123/219 (56%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD V I +LQ + E+IPLDI+YED ++VVNKP MVVHP+ G+
Sbjct: 49 VKANYKTQPGDHVILNIPDLQTPDIKPENIPLDILYEDQWLMVVNKPKDMVVHPSAGHME 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN ++ HC + S I+G +RPGIVHR+DK T+G
Sbjct: 109 GTLVNAVMAHCG----------------------DNLSGINGV-MRPGIVHRIDKDTTGA 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L++ KD+ H +L+EQ K H+I+R Y ++ G + G ++ PI R P +R +MA
Sbjct: 146 LLICKDDMVHRNLAEQLKEHSIKRRYRAIVQGNIKEDEGTVDAPIGRHPIDRKKMAI--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H + A + YKV+E G + +E RLETGRTHQ
Sbjct: 203 --NHKNGKEAVTHYKVLERF--GQTTYIECRLETGRTHQ 237
>gi|414155728|ref|ZP_11412038.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
gi|410872663|gb|EKS20604.1| RluA family pseudouridine synthase [Streptococcus sp. F0442]
Length = 296
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E+ + EAED+PLDIVYED +V+VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYTVKEGDIIQYEVPEMVEISYEAEDLPLDIVYEDQDVVVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H +D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 106 VNALLYHV----------------KDL-------SGING-ELRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+E+ K R Y ++ G G IE PI R +R + A
Sbjct: 142 AKNDQAHVALAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R++V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFQVLERF--GDYTLVELQLETGRTHQ 229
>gi|405377633|ref|ZP_11031573.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
gi|397325899|gb|EJJ30224.1| pseudouridine synthase, RluA family [Rhizobium sp. CF142]
Length = 341
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 124/223 (55%), Gaps = 34/223 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD + E + + EDIPLDI+YED++V+V++KPA +VVHP PGN TGTLVN
Sbjct: 64 KVRAGDSYEIILPEPEDPAPKGEDIPLDILYEDEDVIVISKPAGLVVHPGPGNWTGTLVN 123
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+++HC + S I G RPGIVHRLDK T+G++VVAK
Sbjct: 124 ALIYHCG----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVVAK 160
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++ +H HLS QF H +ER Y ++ G P SG I+ P+ R +R R A
Sbjct: 161 NDMAHRHLSLQFADHGRTMPLERAYQAIVWGRPRSLSGTIDAPLGRATGDRTRRAVKRPE 220
Query: 204 NKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
N+ A A + Y+V+E A ++LVE LETGRTHQ
Sbjct: 221 NE--SADEAITHYEVLERFHESPDASALASLVECHLETGRTHQ 261
>gi|253702050|ref|YP_003023239.1| pseudouridine synthase [Geobacter sp. M21]
gi|251776900|gb|ACT19481.1| pseudouridine synthase, RluA family [Geobacter sp. M21]
Length = 319
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 113/190 (59%), Gaps = 31/190 (16%)
Query: 52 IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAED 111
IP++++YED ++VVNK A MVVHP GN GTLVN +L HC +D
Sbjct: 78 IPIEVLYEDGELVVVNKGAGMVVHPGAGNPEGTLVNALLAHC----------------KD 121
Query: 112 ISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISL 171
+S G +RPGIVHR+DK TSG LVVAK + +H L+EQFK HTI+RVY++L
Sbjct: 122 LSG--------IGGELRPGIVHRIDKDTSGTLVVAKSDRAHNALAEQFKEHTIKRVYLAL 173
Query: 172 TSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVE 231
G P + GRIE I R P +R +M+A +HG + A + ++V+ G L+
Sbjct: 174 VYGSPKEDKGRIESSIGRHPTDRKKMSA---KARHG--KQAVTHWRVVARYP--GITLIR 226
Query: 232 WRLETGRTHQ 241
RLETGRTHQ
Sbjct: 227 LRLETGRTHQ 236
>gi|365902765|ref|ZP_09440588.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
malefermentans KCTC 3548]
Length = 306
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 120/213 (56%), Gaps = 33/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ GD + +E E EDIPLDIVYEDD+V+VVNKPA MVVHP+ G+ TLVN
Sbjct: 53 VQNGDKIEIDRAEPVASGVEPEDIPLDIVYEDDDVIVVNKPAGMVVHPSAGHPNHTLVNA 112
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L+H L S+I+G + RPGIVHR+DK T+GLL+VAK+
Sbjct: 113 LLYHSPL------------------------STING-TFRPGIVHRIDKDTTGLLMVAKN 147
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+H+H L+ Q K T +R Y++L G+ G I PI+R +R +M + G
Sbjct: 148 DHAHQSLAAQLKAKTNKREYVALVHGIVKNDEGTINAPIARSLKDRKKMGIVQG------ 201
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y+V+E LV RLETGRTHQ
Sbjct: 202 GRVAITHYRVLERYL--NYTLVACRLETGRTHQ 232
>gi|163782801|ref|ZP_02177797.1| hypothetical protein HG1285_15736 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881922|gb|EDP75430.1| hypothetical protein HG1285_15736 [Hydrogenivirga sp. 128-5-R1-1]
Length = 322
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 126/216 (58%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK GD V ++ E +PL + EDIP+++VYED +V+V+ KP +VVHP+PG +GTL
Sbjct: 56 SYRVKEGDRVTLSVPEPEPLEVKPEDIPIEVVYEDRDVVVIVKPCGLVVHPSPGYTSGTL 115
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H +D+ SSI G RPGIVHRLDK T+GL+VV
Sbjct: 116 VNALLYHI----------------KDL-------SSIGGVE-RPGIVHRLDKETAGLMVV 151
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH +L EQF E++Y +L G + G +E+PI R P +R + S
Sbjct: 152 AKNDTSHRNLVEQFASRRTEKLYRALVKGTVKEEHGILELPIGRHPFHRKKF-----STS 206
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++ A S + V+E G L++ ++ TGRTHQ
Sbjct: 207 SPRSKPAKSEFWVLERFPGLELTLLKVKIYTGRTHQ 242
>gi|260438385|ref|ZP_05792201.1| ribosomal large subunit pseudouridine synthase D [Butyrivibrio
crossotus DSM 2876]
gi|292808971|gb|EFF68176.1| ribosomal large subunit pseudouridine synthase D [Butyrivibrio
crossotus DSM 2876]
Length = 316
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 122/217 (56%), Gaps = 34/217 (15%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ + D++ I L+ + AE+IPLDIVYEDD++++VNKP MVVHP+ G+ TGTLV
Sbjct: 63 YKISYNDLIKVMIPYLEDINIVAENIPLDIVYEDDDIILVNKPKGMVVHPSAGHYTGTLV 122
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLV 144
N +++HC S+++SG + +RPGIVHR+DK T+G++V
Sbjct: 123 NALMYHC-------------------------SNNLSGINGVMRPGIVHRIDKDTTGIIV 157
Query: 145 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
K++ +H LSEQ K H I R Y ++ + G ++ PI R P R +MA
Sbjct: 158 ACKNDAAHISLSEQLKEHNITRYYYAICHNCFKEKEGTVDAPIGRHPVERKKMAI----- 212
Query: 205 KHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + Y+V+E A ++ +LETGRTHQ
Sbjct: 213 NYKNGKKAVTHYEVLENFR--NFAYIKCKLETGRTHQ 247
>gi|94264419|ref|ZP_01288209.1| Pseudouridine synthase, RluD [delta proteobacterium MLMS-1]
gi|93455176|gb|EAT05394.1| Pseudouridine synthase, RluD [delta proteobacterium MLMS-1]
Length = 310
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 123/213 (57%), Gaps = 29/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K GD V + +P+ A++IP ++YED ++LV++KP +VVHPA G+ GTLVNG
Sbjct: 56 LKAGDRVAVEVPAAEPVALAAQEIPFVVLYEDGDLLVISKPPGVVVHPAAGHHRGTLVNG 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+LHHC D+S ISG +RPGIVHRLDK TSG LVVAK+
Sbjct: 116 LLHHC----------------RDLS-------GISG-ELRPGIVHRLDKDTSGCLVVAKN 151
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L QFK +E++Y++L SG + GR+E I R P R +MA P G+
Sbjct: 152 DRAHRDLLAQFKNREVEKIYLALLSGKLAGEQGRVEGAIGRHPKQRQKMAVRPA----GE 207
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +++ + G LV RL++GRTHQ
Sbjct: 208 GRAALTHWRLRQRFT-AGYTLVSLRLDSGRTHQ 239
>gi|292669557|ref|ZP_06602983.1| ribosomal large subunit pseudouridine synthase D [Selenomonas noxia
ATCC 43541]
gi|292648766|gb|EFF66738.1| ribosomal large subunit pseudouridine synthase D [Selenomonas noxia
ATCC 43541]
Length = 302
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 126/216 (58%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++GG+ V C + ++ + AE+IPLDI+YED +++VVNKP MVVHPA G + GTL
Sbjct: 49 NYKLRGGECVACDLPPVEEVSVRAENIPLDILYEDADIIVVNKPRGMVVHPAAGISGGTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC D+ S I+GA +RPGIVHRLDK TSG++
Sbjct: 109 VNALLYHC----------------RDL-------SGINGA-LRPGIVHRLDKDTSGVMAA 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ + R Y ++ G ++ +G I I R P +R RMA + + K
Sbjct: 145 AKNDAAHRSLAEQIQKKEARREYRAIVYGNIAERAGIITGDIGRHPTDRKRMAIVRENGK 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HA + ++V+E GG V RLETGRTHQ
Sbjct: 205 -----HATTHFEVLERF--GGYTFVACRLETGRTHQ 233
>gi|423612107|ref|ZP_17587968.1| RluA family pseudouridine synthase [Bacillus cereus VD107]
gi|401247114|gb|EJR53458.1| RluA family pseudouridine synthase [Bacillus cereus VD107]
Length = 302
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKENDEITVTIPEPEELDIQPEDMSLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|260495646|ref|ZP_05815770.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_33]
gi|260196829|gb|EEW94352.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_33]
Length = 328
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 127/215 (59%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN
Sbjct: 60 LKLGEKIEVSIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 120 LLYYTNNL-----------------------SSING-NIRPGIIHRLDKDTSGLILVAKS 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ SGRIE I RD +R +MA + +
Sbjct: 156 NYAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDSKDRKKMAVVKEN--- 212
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A S YKV+E + G +LVE +ETGRTHQ
Sbjct: 213 --GKIAISNYKVVEQVE--GYSLVEVAIETGRTHQ 243
>gi|256851102|ref|ZP_05556491.1| pseudouridylate synthase [Lactobacillus jensenii 27-2-CHN]
gi|260660526|ref|ZP_05861441.1| pseudouridylate synthase [Lactobacillus jensenii 115-3-CHN]
gi|297205967|ref|ZP_06923362.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii JV-V16]
gi|256616164|gb|EEU21352.1| pseudouridylate synthase [Lactobacillus jensenii 27-2-CHN]
gi|260548248|gb|EEX24223.1| pseudouridylate synthase [Lactobacillus jensenii 115-3-CHN]
gi|297149093|gb|EFH29391.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii JV-V16]
Length = 301
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V D + + +L PL E EDIPLDIVYED++V+VVNKP MVVHP+ G+ TL
Sbjct: 49 SYKVANNDQITVHVPKLVPLNVEPEDIPLDIVYEDEDVIVVNKPQGMVVHPSAGHPNHTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H LA+S E F RPGIVHR+DK TSGLL++
Sbjct: 109 VNALMNHTKF--LAAS-PEGF---------------------RPGIVHRIDKDTSGLLMI 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ ++ L Q T +RVY+++ G +++G I+ PI+R+P +R +MA + G
Sbjct: 145 AKNANARTSLESQLAHKTNKRVYLAIVHGNFKEATGTIDAPIARNPKDRKKMAIVEG--- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + + V+E G ALV +LETGRTHQ
Sbjct: 202 ---GKEAVTHFHVLEQYP--GYALVSCQLETGRTHQ 232
>gi|295132692|ref|YP_003583368.1| ribosomal large subunit pseudouridine synthase D [Zunongwangia
profunda SM-A87]
gi|294980707|gb|ADF51172.1| ribosomal large subunit pseudouridine synthase D [Zunongwangia
profunda SM-A87]
Length = 352
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 122/218 (55%), Gaps = 31/218 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRA--EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK GD+V E P E+IPLDIVYEDD +LVVNKPA MVVHP GN +G
Sbjct: 71 NYKVKAGDVVQVMF-EHPPYEFLLTPENIPLDIVYEDDTLLVVNKPAGMVVHPGHGNYSG 129
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TL+N +++H F + + +S RPG+VHR+DK TSGLL
Sbjct: 130 TLINALVYH-------------------------FENLPNNSSDRPGLVHRIDKDTSGLL 164
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
V+AK EH+ AHLS+QF T ER YI++ G + G +E I R P NR++ G
Sbjct: 165 VIAKTEHAMAHLSKQFFDKTSEREYIAIVWGNVEEDEGTVEGNIGRHPKNRLQNTVYEGE 224
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + + A + KV+E G LV +LETGRTHQ
Sbjct: 225 DAE-KGKPAVTHLKVLERF--GYVTLVACKLETGRTHQ 259
>gi|291546177|emb|CBL19285.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus sp.
SR1/5]
Length = 304
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 121/216 (56%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D ++ I + EDIPLDI+YED++VL+VNKP MVVHPA G+ GTL
Sbjct: 52 NYKVRENDRIHLEIPDSSEPDIVPEDIPLDILYEDEDVLIVNKPKGMVVHPAAGHYQGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC + S I+G +RPGIVHR+DK T+G L+V
Sbjct: 112 VNAVMAHCG----------------------DSLSGINGV-MRPGIVHRIDKDTTGALLV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
K++ +H L+EQ K H+I R Y ++ G + G IE PI R P +R +MA
Sbjct: 149 CKNDIAHRDLAEQLKCHSIRRRYRAVVQGNLKEDEGTIEGPIGRHPTDRKKMAI-----N 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H + A + YKV+E G + VE RLETGRTHQ
Sbjct: 204 HKNGKDAITHYKVLERF--GEATYVECRLETGRTHQ 237
>gi|392303781|emb|CCI70144.1| ribosomal large subunit pseudouridine synthase D [Paenibacillus
polymyxa M1]
Length = 334
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 131/219 (59%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD + ++ E + + E+IPLD+VYED +V+V+NK +VVHPAPG+++
Sbjct: 80 VKANYKLAEGDHIVLSVPEPESVDIMPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHSS 139
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +++HC D+S I+G +RPGIVHR+DK TSGL
Sbjct: 140 GTLVNALMYHC----------------HDLS-------GING-ELRPGIVHRIDKDTSGL 175
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+ AK++ +HA L+ Q K H++ R YI+L G S G ++ PI RD +R +M +
Sbjct: 176 LMAAKNDQAHASLAAQLKDHSVTRKYIALVHGHLSHDQGTVDAPIGRDSGDR-KMFTVTE 234
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N ++HA + + VIE L G L+E +LETGRTHQ
Sbjct: 235 RN----SKHAVTHFLVIERL--GDYTLLELQLETGRTHQ 267
>gi|15615105|ref|NP_243408.1| hypothetical protein BH2542 [Bacillus halodurans C-125]
gi|10175162|dbj|BAB06261.1| BH2542 [Bacillus halodurans C-125]
Length = 305
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD + + E + L E+IP++I+YED++V VVNKP MVVHPAPG+ TGTL
Sbjct: 53 NYKVETGDTLELFVPEPEVLEVVPENIPIEIIYEDEDVAVVNKPRGMVVHPAPGHTTGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++HC+ D+ SSI+G +RPGIVHR+DK TSGLL++
Sbjct: 113 VNALMYHCN----------------DL-------SSINGV-VRPGIVHRIDKDTSGLLMI 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q K T ERVY ++ G G I+ PI RD +R M +
Sbjct: 149 AKNDRAHESLVNQLKAKTTERVYQAIVHGNIPHDHGTIDAPIGRDKVDRQSMTVTEEN-- 206
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R A + + V+E G VE +LETGRTHQ
Sbjct: 207 ---SRDAVTHFTVLERF--GDFTFVECQLETGRTHQ 237
>gi|256263395|ref|ZP_05465927.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 2 str. 63/9]
gi|260565840|ref|ZP_05836323.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 1 str. 16M]
gi|265991692|ref|ZP_06104249.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|265995529|ref|ZP_06108086.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|384212006|ref|YP_005601089.1| RluA family pseudouridine synthase [Brucella melitensis M5-90]
gi|384409116|ref|YP_005597737.1| pseudouridine synthase [Brucella melitensis M28]
gi|260151213|gb|EEW86308.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 1 str. 16M]
gi|262766813|gb|EEZ12431.1| pseudouridine synthase [Brucella melitensis bv. 3 str. Ether]
gi|263002648|gb|EEZ15051.1| pseudouridine synthase [Brucella melitensis bv. 1 str. Rev.1]
gi|263093392|gb|EEZ17461.1| ribosomal large subunit pseudouridine synthase [Brucella melitensis
bv. 2 str. 63/9]
gi|326409663|gb|ADZ66728.1| pseudouridine synthase [Brucella melitensis M28]
gi|326539370|gb|ADZ87585.1| pseudouridine synthase, RluA family protein [Brucella melitensis
M5-90]
Length = 334
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 125/226 (55%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + + E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 51 TKQKLREGMNIAIVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 110
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++ C + S I G RPGIVHRLDK TSG++V
Sbjct: 111 LVNALIYQCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 147
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ +H HLSEQF H +ER Y++L G+ + G ++ + R +R + A +
Sbjct: 148 VAKNDRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQAVV 207
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 208 --HEEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQ 251
>gi|311068067|ref|YP_003972990.1| pseudouridylate synthase [Bacillus atrophaeus 1942]
gi|419823952|ref|ZP_14347485.1| pseudouridylate synthase [Bacillus atrophaeus C89]
gi|310868584|gb|ADP32059.1| pseudouridylate synthase [Bacillus atrophaeus 1942]
gi|388471989|gb|EIM08779.1| pseudouridylate synthase [Bacillus atrophaeus C89]
Length = 303
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 125/219 (57%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKMQPGDQVKVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHVT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC +D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHC----------------KDL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y+++ G+ S G I+ PI RD +R M +
Sbjct: 145 LMVAKNDMAHESLVNQLVHKTVTRKYMAVVHGIISHDDGTIDAPIGRDKKDRQSMTVV-- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ ++A + + V+E LVE +LETGRTHQ
Sbjct: 203 ----REGKNAVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|237745359|ref|ZP_04575840.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
7_1]
gi|229432588|gb|EEO42800.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
7_1]
Length = 314
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 127/215 (59%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN
Sbjct: 60 LKLGEKIEVSIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 120 LLYYTNNL-----------------------SSING-NIRPGIIHRLDKDTSGLILVAKS 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ SGRIE I RD +R +MA + +
Sbjct: 156 NYAHAKLASMFIDKTIHKTYLCIVKGNFSEENISGRIENLIGRDSKDRKKMAVVKEN--- 212
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A S YKV+E + G +LVE +ETGRTHQ
Sbjct: 213 --GKIAISNYKVVEQVE--GYSLVEVAIETGRTHQ 243
>gi|227892505|ref|ZP_04010310.1| pseudouridylate synthase [Lactobacillus ultunensis DSM 16047]
gi|227865626|gb|EEJ73047.1| pseudouridylate synthase [Lactobacillus ultunensis DSM 16047]
Length = 305
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 123/218 (56%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ V+ GD V + ++PL E+IPLDIVYEDD+V+VVNKP MVVHPAPG+
Sbjct: 49 KVSYKVQAGDCVLVNVPAVKPLDVVPENIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H +D++ E RPGIVHR+DK TSGLL
Sbjct: 109 TLVNALLYHT----------------KDLAQSPE--------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK+ + L +Q T +R+Y ++ G + G I+ I R+P +R +MA +
Sbjct: 145 MIAKNAKARESLEDQLAHKTNKRIYWAIVHGNFGEEGGTIDALIGRNPYDRKKMAVVENG 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV+E G +L+E +LETGRTHQ
Sbjct: 205 KK------AVTHFKVLEQFK--GFSLIECQLETGRTHQ 234
>gi|414168204|ref|ZP_11424408.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
gi|410888247|gb|EKS36051.1| RluA family pseudouridine synthase [Afipia clevelandensis ATCC
49720]
Length = 324
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 124/224 (55%), Gaps = 37/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+++V GD + + P E EDIPLDIV+ED +++V++KP ++VVHPA G+ TGTL
Sbjct: 48 AYHVSAGDTITIDVPPAAPAEPEGEDIPLDIVFEDGDLIVIDKPKNLVVHPAAGHETGTL 107
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC S S G RPGIVHRLDK T+GL+VV
Sbjct: 108 VNALIAHCG-----------------------ASLSGIGGVKRPGIVHRLDKDTTGLMVV 144
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++ +H LS QF H + R Y++ GVP++ SG I PI R P+ R +MA
Sbjct: 145 AKNDRAHQSLSAQFADHGRTGEMRRGYMAFVWGVPNRKSGTINEPIDRHPHTREKMAVRQ 204
Query: 202 GSNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
G R A + ++V+E G ++L+ +LETGRTHQ
Sbjct: 205 G------GREAVTHWEVLETFTGKDGKPVASLLACQLETGRTHQ 242
>gi|423367937|ref|ZP_17345369.1| RluA family pseudouridine synthase [Bacillus cereus VD142]
gi|401082798|gb|EJP91063.1| RluA family pseudouridine synthase [Bacillus cereus VD142]
Length = 302
Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 124/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VKG D + TI E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTL
Sbjct: 53 NYKVKGNDEITVTIPEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDVAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E VE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTFVECRLETGRTHQ 236
>gi|218233909|ref|YP_002368692.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus B4264]
gi|229152090|ref|ZP_04280285.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1550]
gi|218161866|gb|ACK61858.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus B4264]
gi|228631439|gb|EEK88073.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
m1550]
Length = 302
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKEEDEITVTIPEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|17986660|ref|NP_539294.1| ribosomal large subunit pseudouridine synthase D [Brucella
melitensis bv. 1 str. 16M]
gi|225853117|ref|YP_002733350.1| pseudouridine synthase [Brucella melitensis ATCC 23457]
gi|384445674|ref|YP_005604393.1| RluA family pseudouridine synthase [Brucella melitensis NI]
gi|17982277|gb|AAL51558.1| ribosomal large subunit pseudouridine synthase d [Brucella
melitensis bv. 1 str. 16M]
gi|225641482|gb|ACO01396.1| pseudouridine synthase, RluA family protein [Brucella melitensis
ATCC 23457]
gi|349743663|gb|AEQ09206.1| pseudouridine synthase, RluA family [Brucella melitensis NI]
Length = 347
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 125/226 (55%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ G + + E +P + E+IPLDI+YEDD+++V+NKPA +VVHP GN TGT
Sbjct: 64 TKQKLREGMNIAIVLPEPEPAEPQGENIPLDILYEDDDLIVINKPAGLVVHPGNGNWTGT 123
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +++ C + S I G RPGIVHRLDK TSG++V
Sbjct: 124 LVNALIYQCG----------------------DSLSGIGGIR-RPGIVHRLDKDTSGVMV 160
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ +H HLSEQF H +ER Y++L G+ + G ++ + R +R + A +
Sbjct: 161 VAKNDRAHRHLSEQFADHGRTGDLERAYLALVWGMTERPQGTVDAYLGRSHRDRTKQAVV 220
Query: 201 PGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
+ ARHA + Y +E A ++LVE RLETGRTHQ
Sbjct: 221 --HEEREDARHAITHYATVEKFSPREDATALASLVECRLETGRTHQ 264
>gi|228960110|ref|ZP_04121774.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229047577|ref|ZP_04193167.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH676]
gi|229111362|ref|ZP_04240915.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock1-15]
gi|423628987|ref|ZP_17604736.1| RluA family pseudouridine synthase [Bacillus cereus VD154]
gi|423641029|ref|ZP_17616647.1| RluA family pseudouridine synthase [Bacillus cereus VD166]
gi|423656753|ref|ZP_17632052.1| RluA family pseudouridine synthase [Bacillus cereus VD200]
gi|228672138|gb|EEL27429.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock1-15]
gi|228723824|gb|EEL75179.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH676]
gi|228799626|gb|EEM46579.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|401268532|gb|EJR74580.1| RluA family pseudouridine synthase [Bacillus cereus VD154]
gi|401280090|gb|EJR86012.1| RluA family pseudouridine synthase [Bacillus cereus VD166]
gi|401290494|gb|EJR96188.1| RluA family pseudouridine synthase [Bacillus cereus VD200]
Length = 302
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKEEDEITVTIPEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|407474149|ref|YP_006788549.1| RluA family pseudouridine synthase [Clostridium acidurici 9a]
gi|407050657|gb|AFS78702.1| pseudouridine synthase, RluA family [Clostridium acidurici 9a]
Length = 302
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 123/213 (57%), Gaps = 31/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ GD + ++ + Q L +E+IP+D+VY D++V V+NKP MVVHPAPGN +GTLVN
Sbjct: 54 VRTGDHIVVSLPQEQELEIISENIPIDMVYNDEDVAVINKPQGMVVHPAPGNYSGTLVNA 113
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L+H TL++ N + +RPGIVHR+DK TSGLL++AK+
Sbjct: 114 LLYHFR--TLSNINNK----------------------MRPGIVHRIDKDTSGLLMIAKN 149
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+H L++Q K H+ R Y +L G + SG I PI R P +R +M ++K
Sbjct: 150 NFAHEDLAQQLKEHSTTRKYYALVEGNIKEDSGTINAPIGRHPIDRKKMTVTDKNSK--- 206
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + +KV+E L+E +LETGRTHQ
Sbjct: 207 --EAITHFKVLERFE--KYTLIEAQLETGRTHQ 235
>gi|238854437|ref|ZP_04644777.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 269-3]
gi|260664477|ref|ZP_05865329.1| pseudouridylate synthase [Lactobacillus jensenii SJ-7A-US]
gi|313472076|ref|ZP_07812568.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 1153]
gi|238832930|gb|EEQ25227.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 269-3]
gi|239530107|gb|EEQ69108.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
jensenii 1153]
gi|260561542|gb|EEX27514.1| pseudouridylate synthase [Lactobacillus jensenii SJ-7A-US]
Length = 301
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V GD ++ + +L PL E EDIPLDIVYED++V+VVNKP MVVHP+ G+ TL
Sbjct: 49 SYKVAIGDKISVHVPKLVPLNVEPEDIPLDIVYEDNDVIVVNKPQGMVVHPSAGHPNHTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H +E ++S G RPGIVHR+DK TSGLL++
Sbjct: 109 VNALMNHT----------------------KELAASPEG--FRPGIVHRIDKDTSGLLMI 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ + L Q T +RVY+++ G ++SG I+ PI+R+P R +MA + +
Sbjct: 145 AKNTQARESLESQLAHKTNKRVYLAIVHGNFKEASGTIDAPIARNPKERKKMAVV----E 200
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G+A A + +KV+E ALV +LETGRTHQ
Sbjct: 201 SGKA--AVTHFKVLEQYP--NYALVSCQLETGRTHQ 232
>gi|374602422|ref|ZP_09675415.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
gi|374392024|gb|EHQ63353.1| RluA family pseudouridine synthase [Paenibacillus dendritiformis
C454]
Length = 323
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 124/216 (57%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD + I + E IPLDI YED +V+V+NKP MVVHPAPG+ +GT+
Sbjct: 71 NYKVGAGDEIELRIPDPASTDIVPEAIPLDIYYEDADVIVINKPRGMVVHPAPGHLSGTV 130
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++HHC D+S I+G +RPGIVHR+DK TSGLL+
Sbjct: 131 VNALMHHC----------------RDLS-------GING-ELRPGIVHRIDKDTSGLLMA 166
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K HT+ R Y +L G + G I+ PI RDP++R +M A+ N
Sbjct: 167 AKNDRAHTELAAQLKAHTVLRKYKALVHGNLAHDQGTIDAPIGRDPHDR-KMFAVTDRN- 224
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ A + ++V E G LVE +LETGRTHQ
Sbjct: 225 ---SKRAVTHFQVAERF--GDVTLVELQLETGRTHQ 255
>gi|206971264|ref|ZP_03232215.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH1134]
gi|228954169|ref|ZP_04116197.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229071392|ref|ZP_04204614.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
F65185]
gi|229081145|ref|ZP_04213655.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock4-2]
gi|229180168|ref|ZP_04307512.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
172560W]
gi|229192062|ref|ZP_04319031.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
ATCC 10876]
gi|365159330|ref|ZP_09355511.1| RluA family pseudouridine synthase [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412304|ref|ZP_17389424.1| RluA family pseudouridine synthase [Bacillus cereus BAG3O-2]
gi|423426027|ref|ZP_17403058.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-2]
gi|423431911|ref|ZP_17408915.1| RluA family pseudouridine synthase [Bacillus cereus BAG4O-1]
gi|423437345|ref|ZP_17414326.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X12-1]
gi|423503431|ref|ZP_17480023.1| RluA family pseudouridine synthase [Bacillus cereus HD73]
gi|449090834|ref|YP_007423275.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|206734036|gb|EDZ51207.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus AH1134]
gi|228591388|gb|EEK49238.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
ATCC 10876]
gi|228603377|gb|EEK60854.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
172560W]
gi|228702189|gb|EEL54665.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock4-2]
gi|228711683|gb|EEL63636.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
F65185]
gi|228805489|gb|EEM52080.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|363625328|gb|EHL76369.1| RluA family pseudouridine synthase [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104372|gb|EJQ12349.1| RluA family pseudouridine synthase [Bacillus cereus BAG3O-2]
gi|401110774|gb|EJQ18673.1| RluA family pseudouridine synthase [Bacillus cereus BAG3X2-2]
gi|401116667|gb|EJQ24505.1| RluA family pseudouridine synthase [Bacillus cereus BAG4O-1]
gi|401120500|gb|EJQ28296.1| RluA family pseudouridine synthase [Bacillus cereus BAG4X12-1]
gi|402459652|gb|EJV91389.1| RluA family pseudouridine synthase [Bacillus cereus HD73]
gi|449024591|gb|AGE79754.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 302
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKEEDEITVTIPEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|310642966|ref|YP_003947724.1| RNA pseudouridine synthase ylyb [Paenibacillus polymyxa SC2]
gi|309247916|gb|ADO57483.1| Uncharacterized RNA pseudouridine synthase ylyB [Paenibacillus
polymyxa SC2]
Length = 323
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 131/219 (59%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD + ++ E + + E+IPLD+VYED +V+V+NK +VVHPAPG+++
Sbjct: 69 VKANYKLAEGDHIVLSVPEPESVDIMPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHSS 128
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +++HC D+S I+G +RPGIVHR+DK TSGL
Sbjct: 129 GTLVNALMYHC----------------HDLS-------GING-ELRPGIVHRIDKDTSGL 164
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+ AK++ +HA L+ Q K H++ R YI+L G S G ++ PI RD +R +M +
Sbjct: 165 LMAAKNDQAHASLAAQLKDHSVTRKYIALVHGHLSHDQGTVDAPIGRDSGDR-KMFTVTE 223
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N ++HA + + VIE L G L+E +LETGRTHQ
Sbjct: 224 RN----SKHAVTHFLVIERL--GDYTLLELQLETGRTHQ 256
>gi|308274565|emb|CBX31164.1| Uncharacterized RNA pseudouridine synthase ylyB [uncultured
Desulfobacterium sp.]
Length = 335
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 130/237 (54%), Gaps = 38/237 (16%)
Query: 12 SVLALFLSMDKLSVS-------HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVL 64
S+ A ++ K++V + VK GD + TI + +P+ E I L+I+YED +++
Sbjct: 50 SIAASLINKGKITVCNQIKKQGYKVKFGDKITGTIPDPEPVSFLPEPIELNILYEDSDII 109
Query: 65 VVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG 124
V+NKP +V HPAPG+ +GTLVN +L HC P L G
Sbjct: 110 VINKPPGIVAHPAPGHYSGTLVNALLFHC--PDLTGI----------------------G 145
Query: 125 ASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE 184
IRPGIVHRLDK TSG LVVAK++ SH +L QFK I + Y++L G P SG I
Sbjct: 146 GEIRPGIVHRLDKDTSGALVVAKNDISHTNLCLQFKERRIRKKYLALVWGNPEHDSGSIT 205
Query: 185 VPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+PI R P+NR +M+ + + + A + +KVIE +L E L+TGRTHQ
Sbjct: 206 LPIGRHPSNRKKMSVL-----TRKPKTAETLWKVIERYK--SVSLWEIDLKTGRTHQ 255
>gi|443327970|ref|ZP_21056575.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
gi|442792379|gb|ELS01861.1| pseudouridine synthase, RluA family [Xenococcus sp. PCC 7305]
Length = 322
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 121/218 (55%), Gaps = 29/218 (13%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S +++ GD + TI L AE+IPLD++YED+ ++++NKP +VVHPAPG+ G
Sbjct: 63 SKKNSLTNGDRLKITIPAPTKLDLIAENIPLDVLYEDEELIIINKPPGLVVHPAPGHPNG 122
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+HC + + I G RPGIVHRLDK T+G +
Sbjct: 123 TLVNALLYHC-----------------------QNLAGIGGVE-RPGIVHRLDKDTTGAI 158
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK + +H HL Q K T R Y + G P SG+I +PI R ++R +MA IP
Sbjct: 159 VVAKSDRAHQHLQAQIKAKTARREYWGVVCGCPKTESGQINLPIGRHKSDRKKMAVIPVD 218
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + + ++E L+ L+++ LETGRTHQ
Sbjct: 219 QG---GREAITHWSILERLS--NYTLMQFLLETGRTHQ 251
>gi|30021981|ref|NP_833612.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 14579]
gi|229129170|ref|ZP_04258143.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-Cer4]
gi|296504387|ref|YP_003666087.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis BMB171]
gi|423585698|ref|ZP_17561785.1| RluA family pseudouridine synthase [Bacillus cereus VD045]
gi|423649754|ref|ZP_17625324.1| RluA family pseudouridine synthase [Bacillus cereus VD169]
gi|29897537|gb|AAP10813.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus
ATCC 14579]
gi|228654407|gb|EEL10272.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-Cer4]
gi|296325439|gb|ADH08367.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis BMB171]
gi|401233044|gb|EJR39540.1| RluA family pseudouridine synthase [Bacillus cereus VD045]
gi|401283034|gb|EJR88931.1| RluA family pseudouridine synthase [Bacillus cereus VD169]
Length = 302
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKEEDEITVTIPEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|398831174|ref|ZP_10589353.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
gi|398212742|gb|EJM99344.1| pseudouridine synthase, RluA family [Phyllobacterium sp. YR531]
Length = 350
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 126/226 (55%), Gaps = 34/226 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
H ++ G + + E + EDIPLDI+YED +++V+NKPA +VVHP GN TGT
Sbjct: 67 TKHKLRDGMNIEIIVPEPEDATPTGEDIPLDILYEDTDLVVINKPAGLVVHPGNGNWTGT 126
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN ++HHC + S I G RPGIVHRLDK TSG++V
Sbjct: 127 LVNALIHHCG----------------------DTLSGIGGVK-RPGIVHRLDKETSGVIV 163
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK++ +H HLS QF H +ER Y+++ G P +++G I+ + R +R + A +
Sbjct: 164 VAKNDLAHRHLSAQFADHGRTGDLERAYLAIVWGTPDRTTGTIDAHLGRSHRDRTKQAIV 223
Query: 201 PGSNKHGQARHAASRYKVIEILAG-----GGSALVEWRLETGRTHQ 241
+ ARHA + ++V+E ++L+E +LETGRTHQ
Sbjct: 224 --HEEREDARHAVTHFEVLERFGAREDSTALASLIECQLETGRTHQ 267
>gi|83949443|ref|ZP_00958176.1| ribosomal large subunit pseudouridine synthase D [Roseovarius
nubinhibens ISM]
gi|83837342|gb|EAP76638.1| ribosomal large subunit pseudouridine synthase D [Roseovarius
nubinhibens ISM]
Length = 341
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 127/229 (55%), Gaps = 35/229 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
V V GD V T+ + E+IPLDIVYED ++LVVNKPA MVVHPAPG GT
Sbjct: 56 VKSRVAEGDEVVITVPVAEESDILPENIPLDIVYEDADLLVVNKPAGMVVHPAPGTPRGT 115
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +LHHC D+S G RPGIVHR+DK TSGLLV
Sbjct: 116 LVNALLHHCG---------------GDLSG--------VGGVRRPGIVHRIDKDTSGLLV 152
Query: 145 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---A 199
VAK + +H L+ QF+ H+ ERVY ++ GVP + R+ + +P N +R+ A
Sbjct: 153 VAKSDQAHHGLAAQFEAHSAERVYQAIVYGVPDAADPRLGGLRGVGFEPGNVLRITTQLA 212
Query: 200 IPGSNKHGQA------RHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
+++ QA +HA +R +V E L S AL+E RLETGRTHQ
Sbjct: 213 RHRTDRQKQAVLFDGGKHAVTRAQVTERLGDPASVALIECRLETGRTHQ 261
>gi|331001807|ref|ZP_08325329.1| hypothetical protein HMPREF0491_00191 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412781|gb|EGG92164.1| hypothetical protein HMPREF0491_00191 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 304
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 131/219 (59%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD+V I + +PL E+IPLDIVYED++V++VNKP MVVHPA G+ +
Sbjct: 49 IKANYRLREGDIVALAIPKPEPLEILPENIPLDIVYEDNDVILVNKPKGMVVHPAAGHYS 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC ++ S I+G +RPGIVHR+D T+G+
Sbjct: 109 GTLVNALLYHC----------------------KDNLSGINGV-LRPGIVHRIDMDTTGI 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
++V K++++H H+++Q H+I R Y+++ SG + G ++ I+R N+R +M
Sbjct: 146 IIVCKNDNAHQHIAKQLAEHSITRKYVAIVSGNIKEDEGVVDAAIARSKNDRKKMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+K G + A + +KV+E L +E LETGRTHQ
Sbjct: 203 -DKDG--KRAVTHFKVLERL--NNYTYIECVLETGRTHQ 236
>gi|229146464|ref|ZP_04274835.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST24]
gi|228637097|gb|EEK93556.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
BDRD-ST24]
Length = 302
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKEEDEITVTIPEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|196228386|ref|ZP_03127253.1| pseudouridine synthase, RluA family [Chthoniobacter flavus
Ellin428]
gi|196227789|gb|EDY22292.1| pseudouridine synthase, RluA family [Chthoniobacter flavus
Ellin428]
Length = 302
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 126/218 (57%), Gaps = 34/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S ++ GD V T+ E P+ E AE+I LD+++EDD+++V+NKPA +VVHPA GN +G
Sbjct: 52 SARLRAGDAV--TLHEPPPVPTETVAEEIALDVLFEDDDLIVINKPAGLVVHPAAGNWSG 109
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
T+VN +LHHC + S G RPGIVHRLDK TSG L
Sbjct: 110 TVVNALLHHCQ------------------------TLSGIGGEQRPGIVHRLDKDTSGCL 145
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK++ +H L++QF + ++Y++L +G ++ SG IE PI R P R +M +P
Sbjct: 146 VVAKNDAAHQSLAKQFAGREVTKIYLALAAGKWARKSGVIEAPIGRHPVQRKKMTVLPAD 205
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R A + Y+V+ L G LVE L TGRTHQ
Sbjct: 206 ----KGRAAKTGYRVLLELPVG--TLVECTLHTGRTHQ 237
>gi|403530188|ref|YP_006664717.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana RM-11]
gi|403232260|gb|AFR26003.1| ribosomal large subunit pseudouridine synthase D [Bartonella
quintana RM-11]
Length = 334
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K M+ TI L+ + E I LDI++EDD+V+V+NK A +VVHP GN TGTLVN
Sbjct: 56 LKPNQMIELTIPILRDAKPSGEAIKLDILFEDDHVIVINKQAGLVVHPGNGNLTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+++HC + S I G RPGIVHRLDK T+G++VVAK+
Sbjct: 116 LIYHCG----------------------DSLSGIGGVK-RPGIVHRLDKNTTGIMVVAKN 152
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+ +H +LS QF H ++R Y +L G P+++ +I+ P+ R P+NR + A I N
Sbjct: 153 DLAHKNLSAQFSDHGRTSALDRRYHALIWGSPNRNVWKIDAPLGRSPHNRTKQAVIYSQN 212
Query: 205 KHGQARHAASRYKVIEILA-----GGGSALVEWRLETGRTHQ 241
H ARHA + + ++E ++L+E RLETGRTHQ
Sbjct: 213 PH--ARHAVTHFSLLEKYGICSDKTSFASLLECRLETGRTHQ 252
>gi|241206033|ref|YP_002977129.1| RluA family pseudouridine synthase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859923|gb|ACS57590.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 341
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 139/252 (55%), Gaps = 43/252 (17%)
Query: 7 EFNQVSVLAL------FLSMDKLS-VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE 59
EF++ + AL FL + ++ V+ GD T+ E + + EDIPLDI++E
Sbjct: 36 EFSRSRIKALIKDGQVFLRGEPVTDPQRKVRTGDSFELTLPEPEDPTPQGEDIPLDILHE 95
Query: 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFS 119
DD+V+V++KP+ +VVHP GN TGTLVN ++HHCS TL
Sbjct: 96 DDDVIVISKPSGLVVHPGAGNWTGTLVNALIHHCS-NTL--------------------- 133
Query: 120 SSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----TIERVYISLTSGV 175
S I G RPGIVHRLDK T+G++VVAK++ +H HLS QF H +ER Y ++ G
Sbjct: 134 SGIGGVR-RPGIVHRLDKDTTGVMVVAKNDIAHRHLSLQFADHGRTMPLERAYQAVVWGR 192
Query: 176 PSQSSGRIEVPISRDPNNRIRMAAI-PGSNKHGQARHAASRYKVIEIL-----AGGGSAL 229
P SG ++ P+ R +R R A P S A A + Y+V+E A ++L
Sbjct: 193 PRSLSGMVDAPLGRATGDRTRRAVKRPDSQ---DADEAITHYQVVERFHEKPDATAFASL 249
Query: 230 VEWRLETGRTHQ 241
VE RLETGRTHQ
Sbjct: 250 VECRLETGRTHQ 261
>gi|262067278|ref|ZP_06026890.1| pseudouridine synthase, RluA family [Fusobacterium periodonticum
ATCC 33693]
gi|291379004|gb|EFE86522.1| pseudouridine synthase, RluA family [Fusobacterium periodonticum
ATCC 33693]
Length = 315
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 126/215 (58%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ V +I E + + EAE+IPLDIV+E+D+ ++VNK +MVVHPA GN TGTLVN
Sbjct: 60 LKSGEKVEISIPEEENIDIEAENIPLDIVFENDDFILVNKKYNMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + L+S N +IRPGI+HRLDK TSGL++VAK+
Sbjct: 120 LLYYTN--NLSSVN----------------------GNIRPGIIHRLDKDTSGLILVAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSS--GRIEVPISRDPNNRIRMAAIPGSNKH 206
+HA L+ F TI + Y+ + G S + GRIE I RD +R +MA + + K
Sbjct: 156 NFAHAKLASMFTDKTIHKTYLCIVKGNFSDENLEGRIENLIGRDTKDRKKMAIVKENGK- 214
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S Y+V+E + +LVE +ETGRTHQ
Sbjct: 215 ----LAISNYRVVEQVK--DYSLVEVLIETGRTHQ 243
>gi|218899046|ref|YP_002447457.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus G9842]
gi|228902397|ref|ZP_04066552.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 4222]
gi|228966845|ref|ZP_04127889.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar sotto str. T04001]
gi|402564764|ref|YP_006607488.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-771]
gi|423359071|ref|ZP_17336574.1| RluA family pseudouridine synthase [Bacillus cereus VD022]
gi|434376996|ref|YP_006611640.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-789]
gi|218543499|gb|ACK95893.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus cereus G9842]
gi|228792944|gb|EEM40502.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228857254|gb|EEN01759.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis IBL 4222]
gi|401084943|gb|EJP93189.1| RluA family pseudouridine synthase [Bacillus cereus VD022]
gi|401793416|gb|AFQ19455.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-771]
gi|401875553|gb|AFQ27720.1| ribosomal large subunit pseudouridine synthase D [Bacillus
thuringiensis HD-789]
Length = 302
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI + + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKEEDEITVTIPDPEALDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 203 -DENG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|56419681|ref|YP_146999.1| hypothetical protein GK1146 [Geobacillus kaustophilus HTA426]
gi|261419335|ref|YP_003253017.1| pseudouridine synthase [Geobacillus sp. Y412MC61]
gi|297530695|ref|YP_003671970.1| pseudouridine synthase [Geobacillus sp. C56-T3]
gi|319766151|ref|YP_004131652.1| pseudouridine synthase [Geobacillus sp. Y412MC52]
gi|56379523|dbj|BAD75431.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261375792|gb|ACX78535.1| pseudouridine synthase, RluA family [Geobacillus sp. Y412MC61]
gi|297253947|gb|ADI27393.1| pseudouridine synthase, RluA family [Geobacillus sp. C56-T3]
gi|317111017|gb|ADU93509.1| pseudouridine synthase, RluA family [Geobacillus sp. Y412MC52]
Length = 304
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 122/219 (55%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD V + E +PL E E IPLDI YED++VLVVNKP MVVHPAPG+
Sbjct: 49 VKANYKCEAGDSVAVSPPEPEPLHVEPEPIPLDIYYEDEDVLVVNKPRGMVVHPAPGHMR 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L HC D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNALLAHC----------------RDL-------SGINGV-LRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L EQ T+ R Y ++ GV G I+ PI RD +R +MA
Sbjct: 145 LMVAKNDAAHRSLVEQLVNKTVTRRYKAIVHGVIPHDYGTIDAPIGRDKRDRKKMAVTEE 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ K A + ++V+E VE +LETGRTHQ
Sbjct: 205 NGK-----EAVTHFRVLERFR--HYTYVECQLETGRTHQ 236
>gi|163794483|ref|ZP_02188454.1| Pseudouridylate synthase, 23S RNA-specific [alpha proteobacterium
BAL199]
gi|159180207|gb|EDP64730.1| Pseudouridylate synthase, 23S RNA-specific [alpha proteobacterium
BAL199]
Length = 349
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 117/216 (54%), Gaps = 28/216 (12%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S VK G + E P EA+D+PL +VYED ++V++KPA M VHPAPG TL
Sbjct: 80 SSPVKPGATYRIDVPEATPAIPEAQDLPLTVVYEDAALIVIDKPAGMTVHPAPGAPKDTL 139
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC + S I G RPGIVHR+DK TSGLLVV
Sbjct: 140 VNALIAHCG----------------------DSLSGIGGVK-RPGIVHRIDKDTSGLLVV 176
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L+ +F H+I+R Y +L G P +GRIE I R P +RIRMA P
Sbjct: 177 AKTDAAHHALAARFADHSIDRAYRALCWGRPIPPAGRIEGAIGRHPRDRIRMAVRP---- 232
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + ++ + + L+E RLETGRTHQ
Sbjct: 233 EGSGKAAVTHFRTVRAF-NEAATLLECRLETGRTHQ 267
>gi|365157073|ref|ZP_09353354.1| RluA family pseudouridine synthase [Bacillus smithii 7_3_47FAA]
gi|363625807|gb|EHL76818.1| RluA family pseudouridine synthase [Bacillus smithii 7_3_47FAA]
Length = 303
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 127/219 (57%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + D + ++ E + L E++ LDI YED +V+VVNKP MVVHPAPG+ +
Sbjct: 49 VKANYKCEADDRIVISVPEPEVLEITPENMDLDIYYEDRDVIVVNKPRGMVVHPAPGHLS 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC +D+S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHC----------------KDLS-------GINGV-LRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+ AK++++H LS+Q T+ R Y ++ GV G I+ PI RDP +R +MA +
Sbjct: 145 LMAAKNDYAHEKLSQQLSNKTVTRKYKAIVHGVIPHDVGTIDAPIGRDPKDRQKMAVVE- 203
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HA + ++V+E + +L+E LETGRTHQ
Sbjct: 204 -----NGKHAVTHFRVLERFS--QYSLIECELETGRTHQ 235
>gi|138894673|ref|YP_001125126.1| ribosomal large subunit pseudouridine synthase D-like protein
[Geobacillus thermodenitrificans NG80-2]
gi|196247711|ref|ZP_03146413.1| pseudouridine synthase, RluA family [Geobacillus sp. G11MC16]
gi|134266186|gb|ABO66381.1| ribosomal large subunit pseudouridine synthase D-like protein
[Geobacillus thermodenitrificans NG80-2]
gi|196212495|gb|EDY07252.1| pseudouridine synthase, RluA family [Geobacillus sp. G11MC16]
Length = 304
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 130/227 (57%), Gaps = 33/227 (14%)
Query: 17 FLSMDKLSVSHNVKG--GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
++++ +V N K GD V + E +PL E E IPLDI YED++VLVVNKP MVV
Sbjct: 41 LVTVNGRTVKANYKSELGDTVAISPPEPEPLHVEPEPIPLDIYYEDEDVLVVNKPRGMVV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+ GTLVN +L HC D+ S I+G +RPGIVHR
Sbjct: 101 HPAPGHMRGTLVNALLAHC----------------RDL-------SGINGV-LRPGIVHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+VAK++ +H L EQ T+ R Y ++ GV G I+ PI RD +R
Sbjct: 137 IDKDTSGLLMVAKNDAAHRSLVEQLVNKTVTRRYKAIVHGVIPHDYGTIDAPIGRDKRDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA ++++G + A + ++V+E VE +LETGRTHQ
Sbjct: 197 KKMAV---TDENG--KEAVTHFRVLERFR--QYTYVECQLETGRTHQ 236
>gi|340754453|ref|ZP_08691207.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
2_1_31]
gi|229423963|gb|EEO39010.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
2_1_31]
Length = 315
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 126/215 (58%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I E + + EAE+IPLDIV+E+D+ ++VNK +MVVHPA GN TGTLVN
Sbjct: 60 LKSGEKIEISIPEEENIDIEAENIPLDIVFENDDFILVNKKYNMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + L+S N +IRPGI+HRLDK TSGL++VAK+
Sbjct: 120 LLYYTN--NLSSVN----------------------GNIRPGIIHRLDKDTSGLILVAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSS--GRIEVPISRDPNNRIRMAAIPGSNKH 206
+HA L+ F TI + Y+ + G S + GRIE I RD +R +MA + + K
Sbjct: 156 NFAHAKLASMFTDKTIHKTYLCIVKGNFSDENLEGRIENLIGRDTKDRKKMAVVKENGK- 214
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S Y+V+E + +LVE +ETGRTHQ
Sbjct: 215 ----LAISNYRVVEQVK--DYSLVEVLIETGRTHQ 243
>gi|228922645|ref|ZP_04085945.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|423582102|ref|ZP_17558213.1| RluA family pseudouridine synthase [Bacillus cereus VD014]
gi|423635337|ref|ZP_17610990.1| RluA family pseudouridine synthase [Bacillus cereus VD156]
gi|228837074|gb|EEM82415.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|401212981|gb|EJR19722.1| RluA family pseudouridine synthase [Bacillus cereus VD014]
gi|401278088|gb|EJR84024.1| RluA family pseudouridine synthase [Bacillus cereus VD156]
Length = 302
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKEEDEITVTIPEPEELDIQPEDLNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGI-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI+RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|161507611|ref|YP_001577565.1| pseudouridine synthase [Lactobacillus helveticus DPC 4571]
gi|160348600|gb|ABX27274.1| pseudouridine synthase [Lactobacillus helveticus DPC 4571]
Length = 303
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 124/218 (56%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ ++ GD + + ++PL E+IPLDIVYED+ V+VVNKP MVVHPAPG+
Sbjct: 49 KVSYKIQAGDKIEINVPAVKPLDVVPENIPLDIVYEDEVVIVVNKPQGMVVHPAPGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H +D++ E RPGIVHR+DK TSGLL
Sbjct: 109 TLVNALLYHT----------------QDLAQSPE--------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK+ + L +Q T +R+Y ++ G + +G I+ PI R+P +R +MA +
Sbjct: 145 MIAKNAKARESLEDQLAHKTNKRIYWAIVHGDFGEENGVIDAPIGRNPYDRKKMAVVENG 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV++ G +L+E +LETGRTHQ
Sbjct: 205 KK------AVTHFKVLKQFK--GYSLIECQLETGRTHQ 234
>gi|298376939|ref|ZP_06986893.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
3_1_19]
gi|298265923|gb|EFI07582.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
3_1_19]
Length = 359
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 125/217 (57%), Gaps = 29/217 (13%)
Query: 26 SHNVKGGDMVNCTISE-LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ VK D+V+ + + L EDIPL+IVYEDD++LVVNKPA +VVHP GN TGT
Sbjct: 81 NYRVKPLDVVSVVMDRPRRELEIIPEDIPLNIVYEDDDLLVVNKPAGLVVHPGHGNYTGT 140
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN + ++ + DD + S R G+VHR+DK TSGLLV
Sbjct: 141 LVNALAYY-------------------LKDDPYYDPS----DPRLGLVHRIDKDTSGLLV 177
Query: 145 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
VAK + ++LS QF T +R Y +L G+ + GRIE I RDP +R++M P +
Sbjct: 178 VAKRPEAKSNLSLQFFNKTTKRKYRALVWGIVQEDEGRIEGNIGRDPRDRMQMTVFPEGD 237
Query: 205 KHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
Q + A + Y V+E L G +LVE RLETGRTHQ
Sbjct: 238 ---QGKTAVTHYTVLERL--GYVSLVECRLETGRTHQ 269
>gi|390942944|ref|YP_006406705.1| RluA family pseudouridine synthase [Belliella baltica DSM 15883]
gi|390416372|gb|AFL83950.1| pseudouridine synthase, RluA family [Belliella baltica DSM 15883]
Length = 346
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 115/193 (59%), Gaps = 30/193 (15%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEAFSD 108
E+IPLDI++ED+ +L++NKPA MVVHPA GN TGTLVNG++H+ + LP L
Sbjct: 94 EEIPLDIIFEDEYLLIINKPAGMVVHPAHGNWTGTLVNGLVHYFNQLPELP--------- 144
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
G S RPG+VHR+DK TSGLLV+AK E + L+ QF HTI+R Y
Sbjct: 145 ---------------GNSGRPGLVHRIDKDTSGLLVIAKSEVAMTDLANQFFHHTIDRTY 189
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
I+L G P + G I + R +R MAA P + + +HA + Y VI+ L +
Sbjct: 190 IALVWGEPQEDEGTINAHVGRSAKDRKVMAAFPDGS---EGKHAITHYAVIKRLR--YVS 244
Query: 229 LVEWRLETGRTHQ 241
L++ LETGRTHQ
Sbjct: 245 LIQCNLETGRTHQ 257
>gi|238018931|ref|ZP_04599357.1| hypothetical protein VEIDISOL_00791 [Veillonella dispar ATCC 17748]
gi|237864415|gb|EEP65705.1| hypothetical protein VEIDISOL_00791 [Veillonella dispar ATCC 17748]
Length = 307
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 124/208 (59%), Gaps = 31/208 (14%)
Query: 34 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 93
+V I E + + + EDIPLD++YED ++++VNK MVVHPA GN +GTLVN +L+HC
Sbjct: 57 VVRVEIPEPESVEVKPEDIPLDVLYEDHDIIIVNKQRGMVVHPAVGNYSGTLVNALLYHC 116
Query: 94 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHA 153
+D+S I+G IRPGIVHRLDK TSG+++ AK++ +H
Sbjct: 117 ----------------KDLS-------GING-EIRPGIVHRLDKDTSGVMMAAKNDAAHI 152
Query: 154 HLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAA 213
L+EQ K H+ +R Y++L G + G I+ PI R P +R++MA + ++K A
Sbjct: 153 GLAEQVKEHSAKRTYLALVQGNIVEEKGTIKAPIGRHPKDRMKMAVVFENSK-----DAV 207
Query: 214 SRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + V+E G LVE LETGRTHQ
Sbjct: 208 THFNVVERF--GHQTLVECNLETGRTHQ 233
>gi|261405686|ref|YP_003241927.1| RluA family pseudouridine synthase [Paenibacillus sp. Y412MC10]
gi|261282149|gb|ACX64120.1| pseudouridine synthase, RluA family [Paenibacillus sp. Y412MC10]
Length = 324
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD + + E + EDIPL+I +ED +V+VVNKP MVVHPAPG+++GTL
Sbjct: 73 NYKVSQGDRIVLKVPEPSAVEIIPEDIPLEIAFEDGDVIVVNKPRGMVVHPAPGHSSGTL 132
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC +D+ S I+G +RPGIVHR+DK T+GL++
Sbjct: 133 VNALMFHC----------------KDL-------SGING-ELRPGIVHRIDKDTTGLIMA 168
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +HA L+ Q K H++ R Y++L G S G I+ PI RD +R ++ + N
Sbjct: 169 AKNDKAHASLAAQLKEHSVNRRYLALVHGNISHDQGTIDAPIGRDAQDR-KLYTVTDRN- 226
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++HA + + V+E G +L+E +LETGRTHQ
Sbjct: 227 ---SKHAVTHFTVVERF--GDYSLLELKLETGRTHQ 257
>gi|298208169|ref|YP_003716348.1| ribosomal large subunit pseudouridine synthase D [Croceibacter
atlanticus HTCC2559]
gi|83848090|gb|EAP85960.1| ribosomal large subunit pseudouridine synthase D [Croceibacter
atlanticus HTCC2559]
Length = 356
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 120/218 (55%), Gaps = 30/218 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRA--EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK GD V + E P EDIPL+IV+EDD+VLVVNKPA MVVHP GN +G
Sbjct: 77 NYKVKAGDEVKV-LFEHPPYEMLLTPEDIPLNIVHEDDDVLVVNKPAGMVVHPGHGNYSG 135
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TL+N ++ H F + + +S RPG+VHR+DK TSGLL
Sbjct: 136 TLINALVFH-------------------------FDNLPNNSSNRPGLVHRIDKDTSGLL 170
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK EH+ HLS+QF T R YI+L G G IE I R P NR++
Sbjct: 171 VVAKTEHAMTHLSKQFFNKTSSREYIALVWGNVEDDQGTIEGHIGRHPKNRLQNTVFLED 230
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + + A + YKVIE L G L+ +LETGRTHQ
Sbjct: 231 DADEKGKPAVTHYKVIERL--GYVTLLSCKLETGRTHQ 266
>gi|406884880|gb|EKD32204.1| hypothetical protein ACD_77C00153G0003, partial [uncultured
bacterium]
Length = 318
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 133/228 (58%), Gaps = 30/228 (13%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTI-SELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+F++ + ++ VK D++ + + + E+IPL+IV+ED ++LV+NKPA +VV
Sbjct: 65 VFVNDKVVKANYMVKPFDVITIVLPYKRRGFEVGPENIPLEIVFEDKDLLVINKPAGLVV 124
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGI-VH 133
HP G+ +GTLVN + H L S ED +D+ R GI VH
Sbjct: 125 HPGHGHFSGTLVNALAFHLGL-----------SQGEDATDE------------RMGILVH 161
Query: 134 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN 193
R+DK TSGLL+VAK++ S L++QF HTIER YI+L G ++SG IE I+RDP+N
Sbjct: 162 RIDKNTSGLLLVAKNDESQLFLAKQFFDHTIERKYIALVWGNLKENSGTIEGNIARDPSN 221
Query: 194 RIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+R P + G + A + YKV+E G + LVE LETGRTHQ
Sbjct: 222 RLRFKVFP---EGGVGKSAITHYKVLERF--GYTTLVECTLETGRTHQ 264
>gi|150009274|ref|YP_001304017.1| ribosomal large subunit pseudouridine synthase D [Parabacteroides
distasonis ATCC 8503]
gi|255015880|ref|ZP_05288006.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_1_7]
gi|256841839|ref|ZP_05547345.1| ribosomal large subunit pseudouridine synthase D [Parabacteroides
sp. D13]
gi|262384161|ref|ZP_06077297.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_1_33B]
gi|301311073|ref|ZP_07217002.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
20_3]
gi|410104658|ref|ZP_11299570.1| RluA family pseudouridine synthase [Parabacteroides sp. D25]
gi|423334410|ref|ZP_17312189.1| RluA family pseudouridine synthase [Parabacteroides distasonis
CL03T12C09]
gi|423339061|ref|ZP_17316802.1| RluA family pseudouridine synthase [Parabacteroides distasonis
CL09T03C24]
gi|149937698|gb|ABR44395.1| ribosomal large subunit pseudouridine synthase D [Parabacteroides
distasonis ATCC 8503]
gi|256736733|gb|EEU50061.1| ribosomal large subunit pseudouridine synthase D [Parabacteroides
sp. D13]
gi|262295059|gb|EEY82991.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
2_1_33B]
gi|300831136|gb|EFK61777.1| ribosomal large subunit pseudouridine synthase D [Bacteroides sp.
20_3]
gi|409225601|gb|EKN18519.1| RluA family pseudouridine synthase [Parabacteroides distasonis
CL03T12C09]
gi|409231395|gb|EKN24248.1| RluA family pseudouridine synthase [Parabacteroides distasonis
CL09T03C24]
gi|409233670|gb|EKN26504.1| RluA family pseudouridine synthase [Parabacteroides sp. D25]
Length = 359
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 125/217 (57%), Gaps = 29/217 (13%)
Query: 26 SHNVKGGDMVNCTISE-LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ VK D+V+ + + L EDIPL+IVYEDD++LVVNKPA +VVHP GN TGT
Sbjct: 81 NYRVKPLDVVSIVMDRPRRELEIIPEDIPLNIVYEDDDLLVVNKPAGLVVHPGHGNYTGT 140
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN + ++ + DD + S R G+VHR+DK TSGLLV
Sbjct: 141 LVNALAYY-------------------LKDDPYYDPS----DPRLGLVHRIDKDTSGLLV 177
Query: 145 VAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
VAK + ++LS QF T +R Y +L G+ + GRIE I RDP +R++M P +
Sbjct: 178 VAKRPEAKSNLSLQFFNKTTKRKYRALVWGIVQEDEGRIEGNIGRDPRDRMQMTVFPEGD 237
Query: 205 KHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
Q + A + Y V+E L G +LVE RLETGRTHQ
Sbjct: 238 ---QGKTAVTHYTVLERL--GYVSLVECRLETGRTHQ 269
>gi|395791384|ref|ZP_10470842.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
gi|395408747|gb|EJF75357.1| RluA family pseudouridine synthase [Bartonella alsatica IBS 382]
Length = 334
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 127/222 (57%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K ++ T+ L+ L E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN
Sbjct: 56 LKPNQIIELTMPVLRDLAPSGEAIVLDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+++HC + S I G RPGIVHRLDK TSG+++VAK+
Sbjct: 116 LIYHCG----------------------KSLSGIGGVR-RPGIVHRLDKNTSGVMIVAKN 152
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+ +H LS QF H ++R Y +L G PS + I + R P+NRI+ A + N
Sbjct: 153 DFAHKSLSAQFSDHGRTSALDRRYHALIWGSPSHNVWTINASLGRSPHNRIKQAVV--HN 210
Query: 205 KHGQARHAASRYKVIE---ILAGGGS--ALVEWRLETGRTHQ 241
+H ARHA + + ++E I A S +L+E RLETGRTHQ
Sbjct: 211 QHPHARHAVTHFSLLEKYGIYADTTSVASLLECRLETGRTHQ 252
>gi|423483483|ref|ZP_17460173.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-2]
gi|401141034|gb|EJQ48589.1| RluA family pseudouridine synthase [Bacillus cereus BAG6X1-2]
Length = 302
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 124/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTL
Sbjct: 53 NYKVKENDEITVTIPEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--NFTLVECRLETGRTHQ 236
>gi|293376242|ref|ZP_06622485.1| pseudouridine synthase, RluA family [Turicibacter sanguinis PC909]
gi|325845167|ref|ZP_08168476.1| pseudouridine synthase, RluA family [Turicibacter sp. HGF1]
gi|292645134|gb|EFF63201.1| pseudouridine synthase, RluA family [Turicibacter sanguinis PC909]
gi|325488832|gb|EGC91232.1| pseudouridine synthase, RluA family [Turicibacter sp. HGF1]
Length = 302
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 124/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ + D + I E + L E++ LDIVY+DD V+VVNKP +MVVHPAPG+ +GTL
Sbjct: 52 NYKCRLNDQIEINIPEPEVLDVIPEEMDLDIVYQDDYVIVVNKPENMVVHPAPGSMSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++ + D+S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 112 VNGLMAQVT----------------DLS-------GINGV-LRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y++L GV +G I+ PI RDP +R +MA +
Sbjct: 148 AKNDVAHESLVNQLVEKTVTRRYVALVHGVIPHDNGTIDAPIGRDPKDRKKMAVVES--- 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HA + +KV++ L+E RLETGRTHQ
Sbjct: 205 ---GKHAVTHFKVLQRFK--EFTLIECRLETGRTHQ 235
>gi|329922661|ref|ZP_08278213.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF5]
gi|328942003|gb|EGG38286.1| pseudouridine synthase, RluA family [Paenibacillus sp. HGF5]
Length = 322
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD + + E + EDIPL+I +ED +V+VVNKP MVVHPAPG+++GTL
Sbjct: 71 NYKVSQGDRIVLKVPEPSAVEIIPEDIPLEIAFEDGDVIVVNKPRGMVVHPAPGHSSGTL 130
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC +D+ S I+G +RPGIVHR+DK T+GL++
Sbjct: 131 VNALMFHC----------------KDL-------SGING-ELRPGIVHRIDKDTTGLIMA 166
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +HA L+ Q K H++ R Y++L G S G I+ PI RD +R ++ + N
Sbjct: 167 AKNDKAHASLAAQLKEHSVNRRYLALVHGNISHDQGTIDAPIGRDAQDR-KLYTVTDRN- 224
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++HA + + V+E G +L+E +LETGRTHQ
Sbjct: 225 ---SKHAVTHFTVVERF--GDYSLLELKLETGRTHQ 255
>gi|289766191|ref|ZP_06525569.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
D11]
gi|289717746|gb|EFD81758.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
D11]
Length = 328
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 126/215 (58%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN
Sbjct: 60 LKLGEKIEVLIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 120 LLYYTNNL-----------------------SSING-NIRPGIIHRLDKDTSGLILVAKS 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ SGRIE I RD +R +MA + +
Sbjct: 156 NYAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDSKDRKKMAVVKEN--- 212
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A S YKV+E + G +LVE +ETGRTHQ
Sbjct: 213 --GKIAISNYKVVEQVE--GYSLVEVAIETGRTHQ 243
>gi|417963427|ref|ZP_12605383.1| pseudouridine synthase, RluA family, partial [Candidatus
Arthromitus sp. SFB-3]
gi|380332987|gb|EIA23662.1| pseudouridine synthase, RluA family, partial [Candidatus
Arthromitus sp. SFB-3]
Length = 219
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 117/193 (60%), Gaps = 30/193 (15%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ VK GD+V+ +++ L A+DI LDIVYED +V++VNK M+VHPA TLV
Sbjct: 53 YKVKIGDVVSILDFDIKRLDILAQDIFLDIVYEDSDVIIVNKEQGMIVHPAQNIYKDTLV 112
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N ++++C +D+S SI+G RPGI+HR+DK TSGLLVVA
Sbjct: 113 NALMYYC----------------KDLS-------SINGVE-RPGIIHRIDKDTSGLLVVA 148
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K++ SH LSEQFK+H+I R Y++L GV +S G I+ I R+P NRI+MA +
Sbjct: 149 KNDLSHKFLSEQFKIHSIRREYVALVHGVIKKSEGLIKTNIGRNPQNRIKMAVVQ----- 203
Query: 207 GQARHAASRYKVI 219
+ + A + YKV+
Sbjct: 204 -KGKEAITEYKVL 215
>gi|256847299|ref|ZP_05552745.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coleohominis 101-4-CHN]
gi|256715963|gb|EEU30938.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
coleohominis 101-4-CHN]
Length = 308
Score = 149 bits (377), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 129/226 (57%), Gaps = 35/226 (15%)
Query: 18 LSMDKLSVS--HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
++++K SV ++++ GD+V + Q + E E+IPL+IVYEDD+VLVVNKP MVVH
Sbjct: 43 VTVNKQSVKPKYHLQAGDIVQVIPEQPQKIDLEPENIPLEIVYEDDDVLVVNKPQGMVVH 102
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
P+ G+ TLVN +L+HC L S I+G RPGIVHR+
Sbjct: 103 PSAGHPNHTLVNALLYHCPL------------------------SHING-EYRPGIVHRI 137
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK++ +H L+ Q K T +R Y++L GV + G I+ P+ R P +R
Sbjct: 138 DKDTSGLLMVAKNDRAHRSLAAQLKAKTNQREYVALVHGVIKEDQGTIDAPLGRSPKDRK 197
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + R A + ++V++ LV +LETGRTHQ
Sbjct: 198 KQAVV------ADGRPAVTHFRVLKRYL--HYTLVACKLETGRTHQ 235
>gi|422314881|ref|ZP_16396332.1| RluA family pseudouridine synthase [Fusobacterium periodonticum
D10]
gi|404593241|gb|EKA94816.1| RluA family pseudouridine synthase [Fusobacterium periodonticum
D10]
Length = 318
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 126/215 (58%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I E + + EAE+IPLDIV+E+D+ ++VNK +MVVHPA GN TGTLVN
Sbjct: 60 LKSGEKIEISIPEEENIDIEAENIPLDIVFENDDFILVNKKYNMVVHPAYGNYTGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + L+S N +IRPGI+HRLDK TSGL++VAK+
Sbjct: 120 LLYYTN--NLSSVN----------------------GNIRPGIIHRLDKDTSGLILVAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSS--GRIEVPISRDPNNRIRMAAIPGSNKH 206
+HA L+ F TI + Y+ + G S + GRIE I RD +R +MA + + K
Sbjct: 156 NFAHAKLASMFTDKTIHKTYLCIVKGNFSDENLEGRIENLIGRDTKDRKKMAVVKENGK- 214
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S Y+V+E + +LVE +ETGRTHQ
Sbjct: 215 ----LAISNYRVVEQVK--DYSLVEVLIETGRTHQ 243
>gi|440227628|ref|YP_007334719.1| ribosomal large subunit pseudouridine synthase D [Rhizobium tropici
CIAT 899]
gi|440039139|gb|AGB72173.1| ribosomal large subunit pseudouridine synthase D [Rhizobium tropici
CIAT 899]
Length = 341
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 126/224 (56%), Gaps = 36/224 (16%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD+ T+ E + + EDIPLD++YEDD+V+V++KPA +VVHP GN +GTLVN
Sbjct: 64 KVRPGDVYEITLPEPEDPTPQGEDIPLDVLYEDDDVIVISKPAGLVVHPGAGNWSGTLVN 123
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++HHC S S G RPGIVHRLDK T+G++VVAK
Sbjct: 124 ALIHHCG-----------------------NSLSGIGGVRRPGIVHRLDKDTTGVMVVAK 160
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI-PG 202
++ +H HLS QF H ++ER Y ++ G P Q G I+ P+ R ++R R A P
Sbjct: 161 NDVAHRHLSLQFADHGRTTSLERAYQAIVWGRPRQLVGTIDAPLGRSSSDRTRRAVKRPD 220
Query: 203 SNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
S A A + Y+V+E A ++L+E LETGRTHQ
Sbjct: 221 SQ---DADEAITHYEVLERFHETPDATALASLIECHLETGRTHQ 261
>gi|225378086|ref|ZP_03755307.1| hypothetical protein ROSEINA2194_03746 [Roseburia inulinivorans DSM
16841]
gi|225210087|gb|EEG92441.1| hypothetical protein ROSEINA2194_03746 [Roseburia inulinivorans DSM
16841]
Length = 303
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 122/218 (55%), Gaps = 34/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K D+V I + + EDIPLDI+YEDD++LVVNKP MVVHP+ G+ +GTL
Sbjct: 52 NYRLKTEDLVTVEIPDAVETQILPEDIPLDILYEDDDLLVVNKPKGMVVHPSAGHYSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG--ASIRPGIVHRLDKGTSGLL 143
VN I++HC S+SG IRPGIVHR+D T+G L
Sbjct: 112 VNAIMYHC-------------------------KDSLSGINGEIRPGIVHRIDMDTTGSL 146
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+V K++ SH ++EQ K H++ R Y + GV G I PI R P +R +MA +
Sbjct: 147 IVCKNDESHVFIAEQIKEHSVNRRYRGIVYGVVRDDEGTIHAPIGRHPVDRKKMAI---N 203
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K+G + A + YKV+E +E++LETGRTHQ
Sbjct: 204 EKNG--KDAITHYKVLERF--DKYTYMEFKLETGRTHQ 237
>gi|392960490|ref|ZP_10325958.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
gi|421054753|ref|ZP_15517718.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|421061524|ref|ZP_15523839.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|421066823|ref|ZP_15528377.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|421071616|ref|ZP_15532732.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392440434|gb|EIW18114.1| pseudouridine synthase, RluA family [Pelosinus fermentans B4]
gi|392446881|gb|EIW24152.1| pseudouridine synthase, RluA family [Pelosinus fermentans A11]
gi|392449275|gb|EIW26404.1| pseudouridine synthase, RluA family [Pelosinus fermentans B3]
gi|392453103|gb|EIW30007.1| pseudouridine synthase, RluA family [Pelosinus fermentans A12]
gi|392455067|gb|EIW31874.1| pseudouridine synthase, RluA family [Pelosinus fermentans DSM
17108]
Length = 308
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 126/216 (58%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D + +I E++ L AE+IPL I+YED++++++NK MVVHPAPGN GTL
Sbjct: 53 NYKVQELDDIQVSIPEIKTLELTAEEIPLAILYEDNDIIIINKSRGMVVHPAPGNYNGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC ED+ S I+G + RPGIVHRLDK TSG++ V
Sbjct: 113 VNALLEHC----------------EDL-------SGINGVA-RPGIVHRLDKDTSGVMAV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L++Q K T R Y+++ G + G I+ PI R P+ R +MA ++K
Sbjct: 149 AKSDRAHVSLAKQIKERTASRRYLAIVYGNIKEDHGVIKAPIGRHPSERKKMAVTFTNSK 208
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A ++++V+E G LVE +L TGRTHQ
Sbjct: 209 -----EATTKFRVMERF--GDYTLVECKLLTGRTHQ 237
>gi|320160390|ref|YP_004173614.1| pseudouridine synthase [Anaerolinea thermophila UNI-1]
gi|319994243|dbj|BAJ63014.1| pseudouridine synthase [Anaerolinea thermophila UNI-1]
Length = 310
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 30/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ G V I QP E E IPL++++E+ ++L+VNKPA MVVHP+ G+ GTLV+
Sbjct: 57 VEAGKEVEIRIPPPQPTSLEPEPIPLEVIFENQDLLLVNKPAGMVVHPSAGHDRGTLVHA 116
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
L H +P L E I +E RPG+VHRLDK TSGL+++AK+
Sbjct: 117 ALAH--IPEL-----------EGIHGEE-----------RPGVVHRLDKDTSGLILLAKN 152
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L +QF+L +++ Y++L G P +GRIE PI RDP NR RMA +P +
Sbjct: 153 DRAHRWLQDQFRLRKVQKTYLALVDGRPPTPTGRIEAPIGRDPKNRQRMAVVPPE----K 208
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A S Y E+ L+E TGRTHQ
Sbjct: 209 GREAVSEYFTREVFP--SHTLLEVHPLTGRTHQ 239
>gi|395782121|ref|ZP_10462526.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
gi|395419611|gb|EJF85909.1| RluA family pseudouridine synthase [Bartonella rattimassiliensis
15908]
Length = 332
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K ++ + +L+ + AEDI LDI++EDD+V+V+NKPA +VVHP GN TGTLVN
Sbjct: 56 LKPNQIIELIMPDLRNAKPSAEDIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+++HC S S G RPGIVHRLDK TSG++VVAK+
Sbjct: 116 LIYHCG-----------------------NSLSGIGGVKRPGIVHRLDKNTSGVMVVAKN 152
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+ +H LS QF H ++R Y +L G P ++ I+ + R P+NR + A I N
Sbjct: 153 DLAHKSLSAQFSDHGRTCALDRRYHALIWGTPHRNIWTIDASLGRSPHNRTKQAVI--HN 210
Query: 205 KHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
K+ ARHA + + ++E + ++L+E RLETGRTHQ
Sbjct: 211 KNSYARHAVTHFSLLEKYGTHTDSTSFASLLECRLETGRTHQ 252
>gi|313884116|ref|ZP_07817882.1| pseudouridine synthase, RluA family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620563|gb|EFR31986.1| pseudouridine synthase, RluA family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 314
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 125/216 (57%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ + G +++ + E + L EA+ IPLDI+YEDD++LV+NK A MVVHP+ G+ TL
Sbjct: 57 NYKLSGQELIEMQVPEEEVLEIEAQAIPLDIIYEDDDLLVINKEAGMVVHPSKGHPRDTL 116
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H A S+ S RPG+VHR+DK TSGLLVV
Sbjct: 117 VNALVYHFGNHLAAGSD-----------------------SYRPGLVHRIDKDTSGLLVV 153
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ SH +LS+Q HT+ R+Y L G G IE+P++RDP NR++ A
Sbjct: 154 AKNNESHRYLSQQLMDHTLGRIYYCLVEGQMEVKQGSIEIPLARDPKNRLKYHA------ 207
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
Q + A + ++V+E + ++L++ L+TGRTHQ
Sbjct: 208 DAQGKPAWTDFEVLE--SYPSASLIQAELKTGRTHQ 241
>gi|295099509|emb|CBK88598.1| ribosomal large subunit pseudouridine synthase D [Eubacterium
cylindroides T2-87]
Length = 305
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 124/216 (57%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ ++ GD + I E+Q L E+IPL+IVYEDD+V+V+NKP MVVHPA G+ +GTL
Sbjct: 51 SYILQEGDHLLVNIPEVQSLEVLPENIPLNIVYEDDDVIVINKPKGMVVHPAFGHVSGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++HC +D+ S I+G +RPGIVHR+DK TSGLLVV
Sbjct: 111 VNALMYHC----------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLVV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
K++ +H LSEQ T R Y+++ S G I PI RD +R +MA ++K
Sbjct: 147 CKNDKAHLALSEQLSNKTCHREYLAIVHHPFSHEHGTINAPIGRDEKDRQKMAVTANNSK 206
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E ALV RLETGRTHQ
Sbjct: 207 -----EAITHFTVLENFK--DYALVRCRLETGRTHQ 235
>gi|398310646|ref|ZP_10514120.1| pseudouridylate synthase [Bacillus mojavensis RO-H-1]
Length = 303
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 119/219 (54%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ RVY ++ G+ S G I+ PI RD +R M
Sbjct: 145 LMVAKNDMAHESLVNQLVNKTVTRVYTAVVHGIISHDDGTIDAPIGRDKKDRQSMTVTRD 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H R++ LVE +LETGRTHQ
Sbjct: 205 GKNAVTHFHVLDRFQEF--------TLVECQLETGRTHQ 235
>gi|269798295|ref|YP_003312195.1| pseudouridine synthase [Veillonella parvula DSM 2008]
gi|269094924|gb|ACZ24915.1| pseudouridine synthase, RluA family [Veillonella parvula DSM 2008]
Length = 305
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 122/208 (58%), Gaps = 31/208 (14%)
Query: 34 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 93
++ I E + + + EDIPLD +YED ++++VNKP MVVHPA GN +GTLVN +L HC
Sbjct: 57 VIRVEIPEPESIEVKPEDIPLDYLYEDHDIVIVNKPRGMVVHPAVGNYSGTLVNALLFHC 116
Query: 94 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHA 153
+D+S I+G IRPGIVHRLDK TSG+++VAK++ +H
Sbjct: 117 ----------------KDLS-------GING-EIRPGIVHRLDKDTSGVMMVAKNDAAHI 152
Query: 154 HLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAA 213
L+EQ K H+ R Y +L G + G I+ PI R P +R++MA + ++K A
Sbjct: 153 GLAEQVKAHSARRTYWALVQGNIVEEKGTIKAPIGRHPKDRMKMAVVFENSK-----DAV 207
Query: 214 SRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ +KV+ G LVE LETGRTHQ
Sbjct: 208 THFKVLARY--GHQTLVECNLETGRTHQ 233
>gi|294786018|ref|ZP_06751305.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_27]
gi|294486355|gb|EFG33718.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium sp.
3_1_27]
Length = 316
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 127/215 (59%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I E + + EAE+I LDIVYE+D+ +V+NK MVVHPA GN +GTLVN
Sbjct: 60 LKLGEKIEISIPEEENIDIEAENISLDIVYENDDFIVINKSYGMVVHPAYGNYSGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGI+HRLDK TSGL++VAK+
Sbjct: 120 LLYYTNNL-----------------------SSING-NIRPGIIHRLDKDTSGLILVAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ +GRIE I R +R +MA + + K
Sbjct: 156 NYAHAKLASMFTDKTIHKTYLCIVKGNFSEENLNGRIENLIGRGSKDRKKMAVVKENGK- 214
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S YKVIE + G +LVE +ETGRTHQ
Sbjct: 215 ----TAISNYKVIEQV--DGYSLVEIAIETGRTHQ 243
>gi|419718765|ref|ZP_14246071.1| pseudouridine synthase, RluA family [Lachnoanaerobaculum saburreum
F0468]
gi|383305105|gb|EIC96484.1| pseudouridine synthase, RluA family [Lachnoanaerobaculum saburreum
F0468]
Length = 303
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 35/221 (15%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ +K G+ V I + +PL E+IP+DI+YED++V++VNKP MVVHPA G+
Sbjct: 49 IKANYRLKEGECVVLDIPKPEPLEIVPENIPIDILYEDEDVILVNKPKGMVVHPAAGHYK 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTS 140
GTLVN +L+HC S++SG + +RPGIVHR+D T+
Sbjct: 109 GTLVNALLYHC-------------------------KSNLSGINGVLRPGIVHRIDMDTT 143
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
G++++ K++ +H H+++Q H+I R Y+++ +G G ++ PI R N+R +MA
Sbjct: 144 GVIIICKNDIAHQHIAKQLANHSITRKYVAIVNGNIKDDEGVVDAPIKRSKNDRKKMAV- 202
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+K G + A + YKV+E L G +E LETGRTHQ
Sbjct: 203 ---DKDG--KRAVTHYKVLERL--NGYTYIECVLETGRTHQ 236
>gi|308069860|ref|YP_003871465.1| RNA pseudouridine synthase (RNA-uridine isomerase) [Paenibacillus
polymyxa E681]
gi|305859139|gb|ADM70927.1| Hypothetical RNA pseudouridine synthase (RNA-uridine isomerase)
[Paenibacillus polymyxa E681]
Length = 334
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 131/219 (59%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD + ++ E + + E+IPLD+VYED +V+V+NK +VVHPAPG+++
Sbjct: 80 IKANYKLAEGDRIVLSVPEPESVDIVPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHSS 139
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +++HC D+S I+G +RPGIVHR+DK TSGL
Sbjct: 140 GTLVNALMYHC----------------HDLS-------GING-ELRPGIVHRIDKDTSGL 175
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+ AK++ +HA L+ Q K H++ R YI+L G S G ++ PI RD +R ++ +
Sbjct: 176 LMAAKNDQAHASLAAQLKDHSVTRKYIALVHGHLSHDQGTVDAPIGRDSGDR-KLFTVTE 234
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N ++HA + + VIE L G L+E +LETGRTHQ
Sbjct: 235 RN----SKHAVTHFLVIERL--GDYTLLELQLETGRTHQ 267
>gi|116333479|ref|YP_795006.1| pseudouridylate synthase [Lactobacillus brevis ATCC 367]
gi|116098826|gb|ABJ63975.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
brevis ATCC 367]
Length = 307
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 119/212 (56%), Gaps = 33/212 (15%)
Query: 30 KGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGI 89
K G + ++ + +PL EDIPL+IVYED +VLVVNKP MVVHPAPG+ TLVN +
Sbjct: 53 KVGATIRVSLPDPEPLDLTPEDIPLEIVYEDADVLVVNKPQGMVVHPAPGHPNHTLVNAL 112
Query: 90 LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDE 149
L+H L S I+G ++RPGIVHR+DK TSGLL+VAK++
Sbjct: 113 LYHSPL------------------------SQING-TLRPGIVHRIDKDTSGLLMVAKND 147
Query: 150 HSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQA 209
H+H LS Q + T R Y+++ G + G I P+ R P +R + A +
Sbjct: 148 HAHQSLSAQLQAKTNLREYVAIVHGNIKEEDGVIRAPLGRSPKDRKKQAIV------ADG 201
Query: 210 RHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+E G L+ RLETGRTHQ
Sbjct: 202 RPAVTHFRVLERY--GTYTLIACRLETGRTHQ 231
>gi|114799098|ref|YP_762171.1| RluA family pseudouridine synthase [Hyphomonas neptunium ATCC
15444]
gi|114739272|gb|ABI77397.1| pseudouridine synthase, RluA family [Hyphomonas neptunium ATCC
15444]
Length = 341
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 123/220 (55%), Gaps = 31/220 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK G + + P EAE IPL+I++ED +++++NK A M VHPAPG+ TGTLVN
Sbjct: 56 VKKGLVYAVNMPPPVPAMPEAEAIPLEILFEDAHLVILNKAAGMAVHPAPGSQTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+LHHC + S I G RPGIVHRLDK TSG++V AK
Sbjct: 116 LLHHC----------------------QGQLSGIGGVE-RPGIVHRLDKLTSGVMVAAKT 152
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E +H L+ F+ H I+RVY ++T G P SG IE I+R ++R +M ++ +
Sbjct: 153 ESAHTGLAALFERHDIDRVYRAVTRGAPRPLSGTIEAAIARSESDRKKM-SVHRNPDSPA 211
Query: 209 ARHAASRYKVIEILAGG-------GSALVEWRLETGRTHQ 241
ARHA + YK +E +AL+E RLETGRTHQ
Sbjct: 212 ARHAVTHYKAVETFGYKDRATRLPAAALLECRLETGRTHQ 251
>gi|291536189|emb|CBL09301.1| ribosomal large subunit pseudouridine synthase D [Roseburia
intestinalis M50/1]
Length = 310
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 121/218 (55%), Gaps = 34/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ D+V I + EDIPLDI+YEDD++LVVNKP MVVHP+ G+ +GTL
Sbjct: 59 NYRLRMDDLVCVEIPDAVETPILPEDIPLDILYEDDDLLVVNKPKGMVVHPSAGHYSGTL 118
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG--ASIRPGIVHRLDKGTSGLL 143
VN I+ HC S+SG IRPGIVHR+D T+G L
Sbjct: 119 VNAIMFHCK-------------------------DSLSGINGEIRPGIVHRIDMDTTGSL 153
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+V K++ SH ++EQ K H++ R Y + GV G I PI R P NR +MA +
Sbjct: 154 IVCKNDESHVKIAEQIKEHSVNRRYRGIVYGVVKDDEGTINAPIGRHPTNRKKMAI---N 210
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K+G+ A + YKV+E + +E++LETGRTHQ
Sbjct: 211 KKNGKP--AITHYKVLERFS--NYTYMEFKLETGRTHQ 244
>gi|124006632|ref|ZP_01691464.1| pseudouridine synthase, RluD [Microscilla marina ATCC 23134]
gi|123987787|gb|EAY27478.1| pseudouridine synthase, RluD [Microscilla marina ATCC 23134]
Length = 360
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 125/218 (57%), Gaps = 33/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEA--EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ V+ D++ ++ E P +E EDIP++IVYEDD++LVV+K A MVVHPA N TG
Sbjct: 86 NYKVRPEDIIIISLPE-PPRESEVVPEDIPINIVYEDDDLLVVHKEAGMVVHPAYNNWTG 144
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN + +H F + RPG+VHR+DK TSGLL
Sbjct: 145 TLVNALAYH-------------------------FKNLPENRDGRPGLVHRIDKDTSGLL 179
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK EH+ HL++QF HTIER Y +L G P Q +G I+V + R +R AA P
Sbjct: 180 VVAKSEHALQHLAKQFFDHTIERTYYALVWGEPKQEAGTIDVNLGRSLKDRRVTAAFPEG 239
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ RHA + YKV++ L +LV+ LETGRTHQ
Sbjct: 240 DF---GRHAVTHYKVLKNLR--YVSLVQCNLETGRTHQ 272
>gi|148552990|ref|YP_001260572.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
wittichii RW1]
gi|148498180|gb|ABQ66434.1| ribosomal large subunit pseudouridine synthase D [Sphingomonas
wittichii RW1]
Length = 321
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 121/214 (56%), Gaps = 29/214 (13%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V G + + P A+DIPL + YED++++V++KPA +VVHPA GN GTLVN
Sbjct: 60 KVAPGARFAVIVPDPAPAHNAAQDIPLVVAYEDEHLIVIDKPAGLVVHPAAGNPDGTLVN 119
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC S S G RPGIVHR+DK TSGL+V AK
Sbjct: 120 ALLHHC-----------------------RGSLSGIGGVERPGIVHRIDKDTSGLMVAAK 156
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H L+ QF H+I+R Y ++ +G P ++G ++ P++R +R ++A + G
Sbjct: 157 TDPAHVGLAAQFARHSIDRRYRAIVAGTPRLAAGTVDAPLARSTADRKKIAIV----ADG 212
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + Y VIE L +ALVE RLETGRTHQ
Sbjct: 213 RGKRAVTHYSVIEPLR--RAALVECRLETGRTHQ 244
>gi|296536195|ref|ZP_06898317.1| ribosomal large subunit pseudouridine synthase D [Roseomonas
cervicalis ATCC 49957]
gi|296263477|gb|EFH09980.1| ribosomal large subunit pseudouridine synthase D [Roseomonas
cervicalis ATCC 49957]
Length = 343
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 109/191 (57%), Gaps = 29/191 (15%)
Query: 51 DIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAE 110
DIPL I++ED +++V++KPA +VVHPAPGN GTLVN +L H
Sbjct: 99 DIPLTILFEDRHLIVLDKPAGLVVHPAPGNQDGTLVNALLAHAG---------------- 142
Query: 111 DISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYIS 170
EE + G RPGIVHRLDK TSG++VVAK E +H LS F +ER Y++
Sbjct: 143 -----EELTGI--GGEKRPGIVHRLDKDTSGVMVVAKSEVAHTALSAAFASRDLERAYLA 195
Query: 171 LTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALV 230
L GVP+ +SG ++ P+ R P +R RMA + + KH R+A R G AL+
Sbjct: 196 LAWGVPAPASGEVDAPVGRHPTDRKRMAVVARNGKHALTRYATERAW------GTSCALL 249
Query: 231 EWRLETGRTHQ 241
RL TGRTHQ
Sbjct: 250 RCRLATGRTHQ 260
>gi|86137869|ref|ZP_01056445.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
MED193]
gi|85825461|gb|EAQ45660.1| ribosomal large subunit pseudouridine synthase D [Roseobacter sp.
MED193]
Length = 346
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 125/226 (55%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V G ++ T+ E + EDI LD+++EDD+++V+NKP+ MVVHPAPG +GTLVN
Sbjct: 59 RVAEGAVITITVEEAEDSHIGPEDIALDVIFEDDDLIVINKPSGMVVHPAPGTPSGTLVN 118
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC E S + G RPGIVHR+DK TSGLLVVAK
Sbjct: 119 ALLHHCG----------------------ENLSGVGGVK-RPGIVHRIDKETSGLLVVAK 155
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMAAIPGSNK 205
+ +H L+ QF+ HT+ER Y ++ GVP + R+ S +P N +++ +K
Sbjct: 156 SDAAHQGLAAQFEKHTVERYYRAICYGVPDANDPRLRGVKGTSFEPGNILKLTTQLARHK 215
Query: 206 HGQ---------ARHAASRYKVIEIL-AGGGSALVEWRLETGRTHQ 241
H + RHA +R +++E A AL+E LETGRTHQ
Sbjct: 216 HDRQRQAVLFQGGRHAVTRARIVEPFGAPPVVALIECWLETGRTHQ 261
>gi|42519111|ref|NP_965041.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii NCC 533]
gi|41583398|gb|AAS09007.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii NCC 533]
Length = 304
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 125/218 (57%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ V+ GD+++ TI ++PL EAE++ LDIVYED +V+VVNKP MVVHP+ G+
Sbjct: 49 KVSYKVQSGDVIDVTIPPVKPLSLEAENLHLDIVYEDSDVIVVNKPQGMVVHPSAGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVNG+L+H D++D E RPGIVHR+DK TSGLL
Sbjct: 109 TLVNGLLYHT----------------RDLADSPE--------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK++ + L +Q +R Y+++ G +G I PI R+PNNR +MA P
Sbjct: 145 MIAKNDKARESLEKQLAEKINKREYLAIVHGNFEVKNGVINAPIGRNPNNRKQMAVNP-- 202
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + + V+E +LV+ LETGRTHQ
Sbjct: 203 ----KGKAAVTHFTVLEQFK--NYSLVKCVLETGRTHQ 234
>gi|81428560|ref|YP_395560.1| pseudouridylate synthase [Lactobacillus sakei subsp. sakei 23K]
gi|78610202|emb|CAI55251.1| Pseudouridylate synthase, 23S rRNA-specific [Lactobacillus sakei
subsp. sakei 23K]
Length = 301
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 117/216 (54%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+H V + ++ TI + L EDIPLDIVYEDD VLVVNKP MVVHP+PG+ GTL
Sbjct: 51 NHKVVADEKISVTIPDPVSLDLVPEDIPLDIVYEDDQVLVVNKPQGMVVHPSPGHPNGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L H L S I+G RPGIVHR+DK TSGLL+V
Sbjct: 111 VNALLAHTPL------------------------SEINGV-FRPGIVHRIDKDTSGLLMV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK +H LSEQ K + R Y++L G + G I+ PI R +R++ A +P
Sbjct: 146 AKTNEAHESLSEQLKAKSNLREYLALVHGNIEEDEGTIDAPIGRSKLDRMKQAIVP---- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V+E L+ RLETGRTHQ
Sbjct: 202 --DGRPAVTHFEVVERFT--DYTLIRCRLETGRTHQ 233
>gi|385825909|ref|YP_005862251.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii DPC 6026]
gi|329667353|gb|AEB93301.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii DPC 6026]
Length = 304
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 125/218 (57%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ V+ GD+++ TI ++PL EAE++ LDIVYED +V+VVNKP MVVHP+ G+
Sbjct: 49 KVSYKVQSGDVIDVTIPPVKPLSLEAENLHLDIVYEDSDVIVVNKPQGMVVHPSAGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVNG+L+H D++D E RPGIVHR+DK TSGLL
Sbjct: 109 TLVNGLLYHT----------------RDLADSPE--------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK++ + L +Q +R Y+++ G +G I PI R+PNNR +MA P
Sbjct: 145 MIAKNDKARESLEKQLAEKINKREYLAIVHGNFEVKNGVINAPIGRNPNNRKQMAVNP-- 202
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + + V+E +LV+ LETGRTHQ
Sbjct: 203 ----KGKAAVTHFTVLEQFK--NYSLVKCVLETGRTHQ 234
>gi|375309375|ref|ZP_09774656.1| RNA pseudouridine synthase ylyb [Paenibacillus sp. Aloe-11]
gi|375078684|gb|EHS56911.1| RNA pseudouridine synthase ylyb [Paenibacillus sp. Aloe-11]
Length = 323
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 130/219 (59%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD + ++ E + + E+IPLD+VYED +V+V+NK +VVHPAPG+ +
Sbjct: 69 IKANYKLAEGDRIELSVPEPESVDIIPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHTS 128
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +++HC D+S I+G +RPGIVHR+DK TSGL
Sbjct: 129 GTLVNALMYHC----------------HDLS-------GING-ELRPGIVHRIDKDTSGL 164
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
++ AK++ +HA L+ Q K H++ R YI+L G S G ++ PI RD +R ++ +
Sbjct: 165 IMAAKNDQAHASLAAQLKEHSVTRKYIALVHGHLSHDQGTVDAPIGRDSGDR-KLFTVTE 223
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N ++HA + + VIE L G L+E +LETGRTHQ
Sbjct: 224 RN----SKHAVTHFLVIERL--GDYTLLELQLETGRTHQ 256
>gi|392948862|ref|ZP_10314462.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
pentosus KCA1]
gi|392435835|gb|EIW13759.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
pentosus KCA1]
Length = 307
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 120/216 (55%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD + +Q E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+ TL
Sbjct: 54 KYKVKVGDQITVAAQTVQATTIEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPDHTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H L S+I+G RPGIVHR+DK TSGLL+V
Sbjct: 114 VNALLYHSPL------------------------STING-EFRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K T R Y++L GV + +G I P+ R +R + A + K
Sbjct: 149 AKNDQAHQSLAAQLKAKTNLREYVALVHGVIKEETGTINAPLGRSLKDRKKQAIV----K 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G R A + +KV++ L+ RLETGRTHQ
Sbjct: 205 TG--RPAVTHFKVLKRYQ--HYTLISCRLETGRTHQ 236
>gi|427418636|ref|ZP_18908819.1| ribosomal large subunit pseudouridine synthase D [Leptolyngbya sp.
PCC 7375]
gi|425761349|gb|EKV02202.1| ribosomal large subunit pseudouridine synthase D [Leptolyngbya sp.
PCC 7375]
Length = 318
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 118/217 (54%), Gaps = 32/217 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V GD + I E++ E IPLDI+YED +LVVNKP MVVHPAPG+ GTLVN
Sbjct: 61 VSSGDWLQLNIPEVEAFELTPEAIPLDILYEDQYLLVVNKPPGMVVHPAPGHPKGTLVNA 120
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC + + + G RPGIVHRLDK T+G +VVAK
Sbjct: 121 VLAHCG----------------------DQLTGVGGVQ-RPGIVHRLDKDTTGAMVVAKT 157
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVP----SQSSGRIEVPISRDPNNRIRMAAIPGSN 204
E HL Q + T +R Y+ + GVP +Q G ++ PI R P +R +MA +P
Sbjct: 158 EPVLHHLQGQIQAKTAQREYLGVVFGVPKLPENQDVGIVDAPIGRHPKDRKKMAVVP-IE 216
Query: 205 KHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K G R A + +++ E L G LV +RLETGRTHQ
Sbjct: 217 KGG--RRAVTHWRIQERL--GNYTLVHYRLETGRTHQ 249
>gi|184155639|ref|YP_001843979.1| pseudouridine synthase [Lactobacillus fermentum IFO 3956]
gi|183226983|dbj|BAG27499.1| pseudouridine synthase [Lactobacillus fermentum IFO 3956]
Length = 304
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 123/219 (56%), Gaps = 33/219 (15%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ + ++ GD V + E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+
Sbjct: 50 VKAKYQLQAGDRVVIEPETPVEIDLEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPN 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +++H L SSI+G +RPGIVHR+DK TSGL
Sbjct: 110 HTLVNALMYHAPL------------------------SSING-ELRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK + +H L+ Q K + R Y++L GV ++ G I+ P++R P +R + A + G
Sbjct: 145 LMVAKTDRAHRSLTAQLKEKSNLREYVALVHGVIKENEGTIDAPLARSPKDRKKQAVVVG 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V++ LV RLETGRTHQ
Sbjct: 205 ------GRHAVTHFRVLKRYQ--HYTLVACRLETGRTHQ 235
>gi|103487227|ref|YP_616788.1| pseudouridine synthase RluD [Sphingopyxis alaskensis RB2256]
gi|98977304|gb|ABF53455.1| ribosomal large subunit pseudouridine synthase D [Sphingopyxis
alaskensis RB2256]
Length = 376
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 29/198 (14%)
Query: 44 PLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQ 103
P A+D+ L I YED +++V++KPA MVVHPA GN GT+VN +LHHC+
Sbjct: 134 PAHNAAQDLDLVIAYEDAHLIVIDKPAGMVVHPAAGNLDGTMVNALLHHCA--------- 184
Query: 104 EAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHT 163
S I G + RPGIVHR+DK TSGL+V AK + +H L++QF H+
Sbjct: 185 -------------GQLSGIGGVA-RPGIVHRIDKDTSGLIVAAKHDKAHEGLAKQFAAHS 230
Query: 164 IERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILA 223
I+R Y+++ +G P ++G ++ + R NR +MA + G+ +HA + Y+ +E L
Sbjct: 231 IDRRYLAIATGRPMPANGTVDAALGRSATNRKKMAVVAA----GRGKHALTHYRTVEPLQ 286
Query: 224 GGGSALVEWRLETGRTHQ 241
G+ L+E RLETGRTHQ
Sbjct: 287 --GATLIECRLETGRTHQ 302
>gi|225567968|ref|ZP_03776993.1| hypothetical protein CLOHYLEM_04041 [Clostridium hylemonae DSM
15053]
gi|225163256|gb|EEG75875.1| hypothetical protein CLOHYLEM_04041 [Clostridium hylemonae DSM
15053]
Length = 304
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 120/219 (54%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GDM+ TI + EDIPL I+YED ++++VNKP MVVHPAPG+ +
Sbjct: 47 VKANYRLSCGDMLEVTIPSAKEPDILPEDIPLHILYEDADIIIVNKPKQMVVHPAPGHYS 106
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN ++ HC S I+G +RPGIVHR+D T+G
Sbjct: 107 GTLVNALMFHCGREL----------------------SGINGM-MRPGIVHRIDMDTTGS 143
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+V K++ +H LSEQ K H+I R+Y ++ G + G + PI R P +R RM
Sbjct: 144 LIVCKNDMAHQALSEQLKKHSIRRIYEAVVHGGFKEEEGTVSAPIGRHPTDRKRM----- 198
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
S AR A + YKV+E G + ++ LETGRTHQ
Sbjct: 199 STHAKNAREAVTHYKVLERF--GEYSYIQCELETGRTHQ 235
>gi|223984556|ref|ZP_03634687.1| hypothetical protein HOLDEFILI_01982 [Holdemania filiformis DSM
12042]
gi|223963484|gb|EEF67865.1| hypothetical protein HOLDEFILI_01982 [Holdemania filiformis DSM
12042]
Length = 307
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 128/226 (56%), Gaps = 33/226 (14%)
Query: 18 LSMDKLSV--SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ +D L V S+ VK GD + T+ E + L A+ +++ L++VYED +V+V+NKP +VVH
Sbjct: 42 VRIDDLPVKNSYKVKAGDEIEVTLPEEEALEAQPQEMALNVVYEDHDVIVINKPKGLVVH 101
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
P PGN TLVNG+L HC D+ S I+G +RPGIVHR+
Sbjct: 102 PGPGNPDHTLVNGLLWHC----------------HDL-------SGINGV-LRPGIVHRI 137
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGL+V K++++H L++Q T R Y +L GV + G I+ PI RD +R
Sbjct: 138 DKDTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYALVHGVINHEYGTIDAPIGRDEKDRQ 197
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+MA + +R A + +KV+E LV RLETGRTHQ
Sbjct: 198 KMAVTEKN-----SRPAITHFKVVERF--DNYTLVSCRLETGRTHQ 236
>gi|417837540|ref|ZP_12483778.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii pf01]
gi|338761083|gb|EGP12352.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
johnsonii pf01]
Length = 304
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 125/218 (57%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ V+ GD+++ TI ++PL EAE++ LDIVYED +V+VVNKP MVVHP+ G+
Sbjct: 49 KVSYKVQSGDVIDVTIPPVKPLSLEAENLHLDIVYEDSDVIVVNKPQGMVVHPSAGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVNG+L+H D++D E RPGIVHR+DK TSGLL
Sbjct: 109 TLVNGLLYHT----------------RDLADSPE--------RFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK++ + L +Q +R Y+++ G +G I PI R+PNNR +MA P
Sbjct: 145 MIAKNDKARESLEKQLAEKINKREYLAIVHGNFEVKNGVINAPIGRNPNNRKQMAVNP-- 202
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + + V+E +LV+ LETGRTHQ
Sbjct: 203 ----KGKAAVTHFTVLEQFK--NYSLVKCVLETGRTHQ 234
>gi|218509234|ref|ZP_03507112.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli Brasil 5]
Length = 274
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 125/224 (55%), Gaps = 36/224 (16%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD T+ E + EDIPLDI+YEDD+++V++KPA +VVHP GN TGTLVN
Sbjct: 45 KVRVGDSFEITLPEPEDPTPRGEDIPLDILYEDDDLIVISKPAGLVVHPGSGNWTGTLVN 104
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++HHC TL S I G RPGIVHRLDK T+G++VVAK
Sbjct: 105 ALIHHCGA-TL---------------------SGIGGVR-RPGIVHRLDKDTTGVMVVAK 141
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI-PG 202
++ +H HLS QF H +ER Y ++ G P +G ++ P+ R +R R A P
Sbjct: 142 NDVAHRHLSLQFADHGRTMPLERAYQAIVWGRPRSLTGTVDAPLGRATGDRTRRAVKRPD 201
Query: 203 SNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
S A A + Y+VIE A ++LVE RLETGRTHQ
Sbjct: 202 SQ---DADQAITHYEVIERFHETPDATALASLVECRLETGRTHQ 242
>gi|197119760|ref|YP_002140187.1| ribosomal large subunit pseudouridine synthase D [Geobacter
bemidjiensis Bem]
gi|197089120|gb|ACH40391.1| 23S rRNA pseudouridines 1911, 1915, 1917 synthase [Geobacter
bemidjiensis Bem]
Length = 319
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 125/214 (58%), Gaps = 31/214 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+KGG++V + P + E+IP++++YED ++VVNK A MVVHP GN GTLVN
Sbjct: 54 KLKGGEVVQVVVPPPTPAEPQPEEIPIEVLYEDAELVVVNKGAGMVVHPGAGNPEGTLVN 113
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+L HC +D+S G +RPGIVHR+DK TSG LVVAK
Sbjct: 114 ALLAHC----------------KDLSG--------IGGELRPGIVHRIDKDTSGTLVVAK 149
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
+ +H L+EQFK H+I+RVY++L G P + GRIE I R P +R +M+A +HG
Sbjct: 150 CDRAHNALAEQFKEHSIKRVYLALVYGSPKEDKGRIESTIGRHPTDRKKMSA---KARHG 206
Query: 208 QARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+ G L+ RLETGRTHQ
Sbjct: 207 --KQAVTHWRVVARYP--GITLIRLRLETGRTHQ 236
>gi|255659722|ref|ZP_05405131.1| ribosomal large subunit pseudouridine synthase D [Mitsuokella
multacida DSM 20544]
gi|260848296|gb|EEX68303.1| ribosomal large subunit pseudouridine synthase D [Mitsuokella
multacida DSM 20544]
Length = 308
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 128/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ G+ V + E +P+ EDIPLDI+YED +++V+NK MVVHPA G TGTL
Sbjct: 52 NYKLQAGEKVTFHLPEAKPVEILPEDIPLDILYEDSDIIVINKARGMVVHPATGIYTGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC +D+ S I+G IRPGIVHRLDK TSG++V
Sbjct: 112 VNALLYHC----------------KDL-------SGING-EIRPGIVHRLDKDTSGVMVA 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ + R+Y ++ G + +G I+ I R P +R +MA + ++
Sbjct: 148 AKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIREEAGVIKGDIGRHPTDRKKMAIV---HE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HG+ A + ++V+E G LVE RLETGRTHQ
Sbjct: 205 HGKP--AVTHFRVLERF--GAYTLVECRLETGRTHQ 236
>gi|402831096|ref|ZP_10879789.1| pseudouridine synthase, RluA family [Capnocytophaga sp. CM59]
gi|402283145|gb|EJU31667.1| pseudouridine synthase, RluA family [Capnocytophaga sp. CM59]
Length = 342
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 125/232 (53%), Gaps = 41/232 (17%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISE------LQPLRAEAEDIPLDIVYEDDNVLVVNKP 69
+F++ + +H VK D V + L P E IPLDIVYED+ ++++NKP
Sbjct: 54 IFVNGVAVKANHRVKANDEVKVMFAHPPHEYLLVP-----EPIPLDIVYEDEELIIINKP 108
Query: 70 AHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRP 129
A +VVHP GN GTL+NG+++H + SS+ RP
Sbjct: 109 AGLVVHPGHGNYQGTLINGLIYHFQHLPMNSSD-------------------------RP 143
Query: 130 GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISR 189
G+VHR+DK TSGLLVVAK E + HL++QF T ER Y++L G ++ G I I R
Sbjct: 144 GLVHRIDKDTSGLLVVAKTEEAMNHLAKQFFNKTSEREYVALVWGNLTEDEGTITGHIGR 203
Query: 190 DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
P NR++MA P + Q + A + YKV+E G LV RLETGRTHQ
Sbjct: 204 HPKNRLQMAVFPDGS---QGKEAITHYKVLERF--GYVTLVSCRLETGRTHQ 250
>gi|427412643|ref|ZP_18902835.1| RluA family pseudouridine synthase [Veillonella ratti
ACS-216-V-Col6b]
gi|425716450|gb|EKU79434.1| RluA family pseudouridine synthase [Veillonella ratti
ACS-216-V-Col6b]
Length = 328
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G + + + Q + + EDIPLDI++ED +++++NKP MVVHPA GN TGTLVN +L
Sbjct: 80 GSTIMVVVPKPQAVEVKPEDIPLDILFEDHDIIIINKPRGMVVHPAVGNYTGTLVNALLF 139
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC D+S I+G IRPGIVHRLDK TSG+++ AK++ +
Sbjct: 140 HC----------------RDLS-------GING-EIRPGIVHRLDKDTSGVMMAAKNDLA 175
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+EQ K H+ R Y +L G + G I+ PI R P +R++MA + ++K
Sbjct: 176 HIGLAEQVKAHSATRTYYALVHGNIVEERGTIKAPIGRHPKDRMKMAVVFENSK-----E 230
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E G LV+ LETGRTHQ
Sbjct: 231 AVTHFTVVERF--GKHTLVQCVLETGRTHQ 258
>gi|260663035|ref|ZP_05863928.1| pseudouridine synthase [Lactobacillus fermentum 28-3-CHN]
gi|260552656|gb|EEX25656.1| pseudouridine synthase [Lactobacillus fermentum 28-3-CHN]
Length = 304
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 123/219 (56%), Gaps = 33/219 (15%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ + ++ GD V + E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+
Sbjct: 50 VKAKYQLQAGDRVVIEPETPVEIDLEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPN 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN +++H L SSI+G +RPGIVHR+DK TSGL
Sbjct: 110 HTLVNALMYHAPL------------------------SSING-ELRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK + +H L+ Q K + R Y++L GV ++ G I+ P++R P +R + A + G
Sbjct: 145 LMVAKTDRAHRSLTAQLKEKSNLREYVALVHGVIKENEGTIDAPLARSPKDRKKQAVVVG 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V++ LV RLETGRTHQ
Sbjct: 205 ------GRHAITHFRVLKRYQ--HYTLVACRLETGRTHQ 235
>gi|291519437|emb|CBK74658.1| ribosomal large subunit pseudouridine synthase D [Butyrivibrio
fibrisolvens 16/4]
Length = 305
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 35/228 (15%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ ++ + K GD + +I ++ + EDIP+DI+YED +V+VVNKP MVVH
Sbjct: 43 VLVNGKQIKSKYQTKLGDEIIVSIEPVKEIDILPEDIPIDILYEDSDVIVVNKPKGMVVH 102
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG--ASIRPGIVH 133
PAPG+ +GTLVN +++HC S+SG IRPGIVH
Sbjct: 103 PAPGHYSGTLVNALMYHC-------------------------KDSLSGINGEIRPGIVH 137
Query: 134 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN 193
R+D T+G L+V K++ +H ++ Q K+H++ R+Y + G + G I I R+P +
Sbjct: 138 RIDMNTTGSLLVCKNDKAHNDIAAQIKVHSVNRIYKGIVVGNFKEEEGTINANIGRNPKD 197
Query: 194 RIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R +MA + R A + Y V+E G + V+++LETGRTHQ
Sbjct: 198 RKKMAVV------SDGREAITHYTVLEQYK--GFSYVQFKLETGRTHQ 237
>gi|134299530|ref|YP_001113026.1| RluA family pseudouridine synthase [Desulfotomaculum reducens MI-1]
gi|134052230|gb|ABO50201.1| ribosomal large subunit pseudouridine synthase D [Desulfotomaculum
reducens MI-1]
Length = 306
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 123/216 (56%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+H ++ + ++ I + L+ E E+IPLDI YED +V+VVNKP MVVHPA GN GTL
Sbjct: 52 NHKLRVEETIHMQIPPAEELKVEPENIPLDIYYEDSHVIVVNKPRGMVVHPAEGNIAGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC D+ S I+G +RPGIVHRLDK TSGL++
Sbjct: 112 VNALLYHC----------------HDL-------SGINGI-MRPGIVHRLDKDTSGLIMA 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L+ Q K T+ R Y +L G I PI RDP +R +MA + ++K
Sbjct: 148 AKHDQAHQSLARQLKDRTVTRRYQALVHHNIKGDFGTINAPIGRDPRDRQKMAVVERNSK 207
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+A + ++V+E G L+E RLETGRTHQ
Sbjct: 208 -----NAVTHFQVLERF--GDYTLIECRLETGRTHQ 236
>gi|365904068|ref|ZP_09441827.1| pseudouridine synthase [Lactobacillus versmoldensis KCTC 3814]
Length = 297
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 118/210 (56%), Gaps = 34/210 (16%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V+ TI +P+ A +DIPLDIVYEDD+VLVVNKP MVVHPA G+ GTLVN IL+
Sbjct: 56 GDEVSFTIPAEKPIEAIPQDIPLDIVYEDDDVLVVNKPQGMVVHPAAGHRDGTLVNAILY 115
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
H I+DD+ IRPGIVHR+DK TSGLL+VAK+ +
Sbjct: 116 HSK-----------------INDDD---------LIRPGIVHRIDKDTSGLLMVAKNNLA 149
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
L Q K + R Y+++ G + G I P+ R NNR + A + R
Sbjct: 150 KQSLMNQLKEKSNLREYVAIVHGNFKERKGIINAPLGRAKNNRKKQAIV------DDGRK 203
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + ++VIE G +LV+ +LETGRTHQ
Sbjct: 204 AVTHFEVIEQFE--GYSLVKLKLETGRTHQ 231
>gi|390453155|ref|ZP_10238683.1| RNA pseudouridine synthase ylyb [Paenibacillus peoriae KCTC 3763]
Length = 323
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 130/219 (59%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD + ++ E + + E+IPLD+VYED +V+V+NK +VVHPAPG+ +
Sbjct: 69 IKANYKLAEGDRIELSVPEPESVDIVPENIPLDVVYEDSDVIVINKQRGLVVHPAPGHTS 128
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +++HC D+S I+G +RPGIVHR+DK TSGL
Sbjct: 129 GTLVNALMYHC----------------HDLS-------GING-ELRPGIVHRIDKDTSGL 164
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
++ AK++ +HA L+ Q K H++ R YI+L G S G ++ PI RD +R ++ +
Sbjct: 165 IMAAKNDQAHASLAAQLKEHSVTRKYIALVHGHLSHDQGTVDAPIGRDSGDR-KLFTVTE 223
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
N ++HA + + VIE L G L+E +LETGRTHQ
Sbjct: 224 RN----SKHAVTHFLVIERL--GDYTLLELQLETGRTHQ 256
>gi|395792031|ref|ZP_10471470.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423714079|ref|ZP_17688338.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395421226|gb|EJF87482.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432950|gb|EJF98924.1| RluA family pseudouridine synthase [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 332
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 126/222 (56%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K ++ T+ L+ E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN
Sbjct: 56 LKPNQIIELTMPVLRDAEPRGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
++HHC S S G RPGIVHRLDK TSG++VVAK+
Sbjct: 116 LIHHCG-----------------------NSLSGIGGVKRPGIVHRLDKNTSGVMVVAKN 152
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+ +H LS QF H ++R Y +L GVPS++ I+ + R P+NRI+ A +
Sbjct: 153 DLAHKSLSAQFSDHGRTCALDRRYHALIWGVPSRNIWTIDASLGRSPHNRIKQAVVHNHK 212
Query: 205 KHGQARHAASRYKVIE---ILAGGG--SALVEWRLETGRTHQ 241
H ARHA + + ++E I A ++L+E RLETGRTHQ
Sbjct: 213 TH--ARHAVTHFSLLEKYRICANTTPFASLLECRLETGRTHQ 252
>gi|154249782|ref|YP_001410607.1| RluA family pseudouridine synthase [Fervidobacterium nodosum
Rt17-B1]
gi|154153718|gb|ABS60950.1| pseudouridine synthase, RluA family [Fervidobacterium nodosum
Rt17-B1]
Length = 314
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 40/222 (18%)
Query: 26 SHNVKGGDMVNCT------ISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPG 79
S+ VK GD++ I E+ P EDIPLDI+YED ++LV+NK ++ HP P
Sbjct: 50 SYKVKSGDIITLNAPEAPEIPEILP-----EDIPLDIIYEDRDILVINKQPGIITHPIPS 104
Query: 80 NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 139
+ +GT+VNG+L+HC D + I G +RPGIVHRLDK T
Sbjct: 105 HTSGTIVNGVLYHCK-------------DLQGI-----------GGVLRPGIVHRLDKDT 140
Query: 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAA 199
SG++V+AK++ +H L++QFK E++YI L GVP + G IE+ I+R+P R++M
Sbjct: 141 SGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKGVPKRKEGDIEINIARNPVLRVKMTV 200
Query: 200 IPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++++G+ A + YKV+ G +ALV +TGRTHQ
Sbjct: 201 T--NSEYGKP--ALTHYKVVREF-GDIAALVFAYPKTGRTHQ 237
>gi|220927321|ref|YP_002502623.1| RluA family pseudouridine synthase [Methylobacterium nodulans ORS
2060]
gi|219951928|gb|ACL62320.1| pseudouridine synthase, RluA family [Methylobacterium nodulans ORS
2060]
Length = 337
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 123/219 (56%), Gaps = 32/219 (14%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GG V T+ +P EAE+ L I YEDD+++V++KP +VVHPAPG+ +GTLVN
Sbjct: 57 RVAGGQTVAVTVPPARPATPEAEERALIIPYEDDDLIVIDKPPGLVVHPAPGHDSGTLVN 116
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++ HC S S G RPGIVHRLDK TSGLLVVAK
Sbjct: 117 ALIAHCG-----------------------ASLSGIGGVRRPGIVHRLDKDTSGLLVVAK 153
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++ +HA LS QF H +ER Y++L GVP +GRI+ ++R +NR ++A +
Sbjct: 154 NDMAHAALSLQFADHGRSGQLERAYLALVWGVPEPRAGRIDAALARSDSNREKIAVV--- 210
Query: 204 NKHGQARHAASRYKVIEILA-GGGSALVEWRLETGRTHQ 241
+ + RHA + Y+ +L LV RLETGRTHQ
Sbjct: 211 -RPEKGRHAITHYRTEAVLGVREPVGLVRCRLETGRTHQ 248
>gi|340777822|ref|ZP_08697765.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter aceti NBRC 14818]
Length = 325
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 109/193 (56%), Gaps = 29/193 (15%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 108
E I I+YEDD+++V++KPA +VVHPAPGN TGTLVN ++ HC
Sbjct: 81 GEAISFPILYEDDDLIVLDKPAGLVVHPAPGNETGTLVNALVAHCG-------------- 126
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
E I G RPGIVHRLDK TSGL+V AK E +H LSE F I+R Y
Sbjct: 127 --------ESLVGIGGER-RPGIVHRLDKDTSGLMVAAKTERAHRALSEDFAARRIDRAY 177
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
++L GVPS + G E I RD +R RMA + K A +RY V++ G +A
Sbjct: 178 LALCWGVPSPTKGEYEGNIGRDKRDRKRMALVGSGGK-----TALTRYTVLKAF-GTYAA 231
Query: 229 LVEWRLETGRTHQ 241
LVE RL TGRTHQ
Sbjct: 232 LVECRLATGRTHQ 244
>gi|163846479|ref|YP_001634523.1| RluA family pseudouridine synthase [Chloroflexus aurantiacus
J-10-fl]
gi|222524258|ref|YP_002568729.1| RluA family pseudouridine synthase [Chloroflexus sp. Y-400-fl]
gi|172045876|sp|Q45826.2|Y901_CHLAA RecName: Full=Uncharacterized RNA pseudouridine synthase Caur_0901;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|163667768|gb|ABY34134.1| pseudouridine synthase, RluA family [Chloroflexus aurantiacus
J-10-fl]
gi|222448137|gb|ACM52403.1| pseudouridine synthase, RluA family [Chloroflexus sp. Y-400-fl]
Length = 316
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 122/216 (56%), Gaps = 34/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S V+ G ++ TI P AE IPLD+VYED ++ V+NKPA MVVHPAPG+ GTL
Sbjct: 63 SQPVRPGAVIQLTIPPPIPTELVAEPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTL 122
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L P LA G +RPGIVHRLD+ TSGLLV+
Sbjct: 123 VNALL--ARYPDLA-----------------------IGGELRPGIVHRLDRDTSGLLVI 157
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
A+ + + L +Q + + ++Y +L G P + +G I+ PI RDP +R+RMA +P
Sbjct: 158 ARHDQAMRSLVDQQQARRMRKIYQALVIGRPPE-TGTIDAPIGRDPRDRLRMAVVP---- 212
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y++++ G +L+E +LETGRTHQ
Sbjct: 213 --DGRPARTHYRLLDTF--GDYSLLEVQLETGRTHQ 244
>gi|422343047|ref|ZP_16423975.1| hypothetical protein HMPREF9432_00035 [Selenomonas noxia F0398]
gi|355379003|gb|EHG26179.1| hypothetical protein HMPREF9432_00035 [Selenomonas noxia F0398]
Length = 302
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 125/216 (57%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ + GG+ V C + + + AE+IPLDI+YED +++VVNKP MVVHPA G + GTL
Sbjct: 49 NYKLCGGECVACDLPPAEEVSVRAENIPLDILYEDADIIVVNKPRGMVVHPAAGISGGTL 108
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC +D+ S I+GA +RPGIVHRLDK TSG++
Sbjct: 109 VNALLYHC----------------QDL-------SGINGA-LRPGIVHRLDKDTSGVMAA 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+EQ + R Y ++ G ++ +G I I R P +R RMA + + K
Sbjct: 145 AKNDAAHRSLAEQIQKKEARREYRAIVYGNIAERAGIITGDIGRHPTDRKRMAIVRENGK 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HA + ++V+E GG V RLETGRTHQ
Sbjct: 205 -----HATTHFEVLERF--GGYTFVACRLETGRTHQ 233
>gi|291087665|ref|ZP_06572048.1| ribosomal large subunit pseudouridine synthase D [Clostridium sp.
M62/1]
gi|291074400|gb|EFE11764.1| pseudouridine synthase, RluA family [Clostridium sp. M62/1]
Length = 300
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 32/227 (14%)
Query: 17 FLSMDKLSV--SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+ +DK +V S+ + G+ + + E +AEDIPLDI+YED ++++VNKP MVV
Sbjct: 35 LVEVDKRTVKNSYKLSAGEKIEFEVPEAAEPEIKAEDIPLDIIYEDSDIILVNKPKGMVV 94
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPA G+ + TLVNG+++HC + S I+G +RPGIVHR
Sbjct: 95 HPAAGHYSQTLVNGLMYHC----------------------RDGLSGINGV-LRPGIVHR 131
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+D T+G+L+V K++ +H ++EQ K+H+I R Y ++ GV + G ++ PI R P +R
Sbjct: 132 IDMDTTGVLIVCKNDFAHNAIAEQLKVHSITRKYFAIVHGVIQEDEGTVDAPIGRHPVDR 191
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+M+ + K+G + A + Y+V+E VE +LETGRTHQ
Sbjct: 192 KKMSI---NRKNG--KEAVTHYRVLERFR--QFTYVECQLETGRTHQ 231
>gi|240146315|ref|ZP_04744916.1| ribosomal large subunit pseudouridine synthase D [Roseburia
intestinalis L1-82]
gi|257201556|gb|EEU99840.1| ribosomal large subunit pseudouridine synthase D [Roseburia
intestinalis L1-82]
Length = 310
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 121/218 (55%), Gaps = 34/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ D+V I + EDIPLDI+YEDD++LVVNKP MVVHP+ G+ +GTL
Sbjct: 59 NYRLRMDDLVCVEIPDAVETPILPEDIPLDILYEDDDLLVVNKPKGMVVHPSAGHYSGTL 118
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG--ASIRPGIVHRLDKGTSGLL 143
VN I+ HC S+SG IRPGIVHR+D T+G L
Sbjct: 119 VNAIMFHCK-------------------------DSLSGINGEIRPGIVHRIDMDTTGSL 153
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+V K++ SH ++EQ K H++ R Y + GV G I PI R P NR +MA +
Sbjct: 154 IVCKNDESHIKIAEQIKEHSVNRRYRGIVYGVVKDDEGTINAPIGRHPTNRKKMAI---N 210
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K+G+ A + YKV+E + +E++LETGRTHQ
Sbjct: 211 EKNGKP--AITHYKVLERFS--NYTYMEFKLETGRTHQ 244
>gi|15672980|ref|NP_267154.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis Il1403]
gi|281491492|ref|YP_003353472.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis KF147]
gi|385830534|ref|YP_005868347.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis CV56]
gi|418038114|ref|ZP_12676463.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723945|gb|AAK05096.1|AE006334_2 pseudouridine synthase [Lactococcus lactis subsp. lactis Il1403]
gi|281375210|gb|ADA64723.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis KF147]
gi|326406542|gb|ADZ63613.1| ribosomal large subunit pseudouridine synthase D [Lactococcus
lactis subsp. lactis CV56]
gi|354693792|gb|EHE93525.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|374673048|dbj|BAL50939.1| pseudouridine synthase [Lactococcus lactis subsp. lactis IO-1]
Length = 301
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 123/210 (58%), Gaps = 32/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + + E + L AED+PL+I+YED +V VVNKP MVVHPA G+A+GTLVN I++
Sbjct: 55 GDRIEFEVPEAEVLDIVAEDLPLEIIYEDSDVAVVNKPQGMVVHPAAGHASGTLVNAIMY 114
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
H +D+ SSI+G IRPGIVHR+DK TSGLL++AK++ +
Sbjct: 115 HI----------------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMIAKNDKA 150
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K T +R Y+++ G + G IE PI R+ +R + A + G +
Sbjct: 151 HESLAAQLKDKTSKRRYLAIVHGEIANDKGTIEAPIGRNLKDRKKQAVVSG------GKP 204
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + ++V+E G L+ RLETGRTHQ
Sbjct: 205 AVTHFEVLERFY--GYTLIALRLETGRTHQ 232
>gi|71083312|ref|YP_266031.1| pseudouridylate synthase [Candidatus Pelagibacter ubique HTCC1062]
gi|71062425|gb|AAZ21428.1| pseudouridylate synthase [Candidatus Pelagibacter ubique HTCC1062]
Length = 326
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 122/221 (55%), Gaps = 31/221 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S S V GD +N I E + + + L IVYEDD++L++NKPA +++HP GN
Sbjct: 52 SPSKKVLSGDEINLQIPEPKEASLKPYNFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDE 111
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
T+VN ++H+ N+++ S G +RPGIVHR+DK TSGL+
Sbjct: 112 TIVNALMHY---------NKDSLSTI--------------GDELRPGIVHRIDKDTSGLI 148
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
V+AK+ +H +LS QF HTI RVY L G SSG+I+ I+R NR M S
Sbjct: 149 VIAKNNETHENLSHQFSEHTITRVYQLLIWGKLRPSSGKIDTFITRSSKNRQMMEV---S 205
Query: 204 NKHGQARHAASRYKVIEILAGGGS---ALVEWRLETGRTHQ 241
N G + A + YK IEI + +LVE RLETGRTHQ
Sbjct: 206 NSKG--KRAITNYKTIEIFENDKTPTLSLVECRLETGRTHQ 244
>gi|398822585|ref|ZP_10580964.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
gi|398226816|gb|EJN13059.1| pseudouridine synthase, RluA family [Bradyrhizobium sp. YR681]
Length = 326
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 127/224 (56%), Gaps = 37/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+++V GD + + E P + EDI LDIV+EDD+++V+NKP +VVHPA G+ TGTL
Sbjct: 50 AYHVISGDTIIIDVPEAAPAEPKGEDIALDIVFEDDDIIVINKPKGLVVHPAAGHETGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC TL S I G RPGIVHRLDK T+GL+VV
Sbjct: 110 VNALIAHCG-ATL---------------------SGIGGVR-RPGIVHRLDKDTTGLMVV 146
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++ +HA LS QF H + R Y++ GVP++ G ++ PI R P+ R +MA
Sbjct: 147 AKNDLAHASLSAQFADHGRTGAMRRGYMAFAWGVPNRHRGTVDAPIDRHPHAREKMAVRQ 206
Query: 202 GSNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
G R A + ++++E +G +AL+ LETGRTHQ
Sbjct: 207 GG------REAVTHWEILESFSGRDGKPIAALLGCELETGRTHQ 244
>gi|422937456|ref|ZP_16966748.1| ribosomal large subunit pseudouridine synthase D, partial
[Fusobacterium nucleatum subsp. animalis ATCC 51191]
gi|339890921|gb|EGQ79974.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
Length = 259
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 126/215 (58%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + I E + + E E+IPLDIVYE+++ +V+NK MVVHPA GN TGTLVN
Sbjct: 5 LKLGEKIEVLIPEEENIDIEPENIPLDIVYENNDFIVINKNYGMVVHPAYGNYTGTLVNA 64
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + SSI+G +IRPGI+HRLDK TSGL++VAK
Sbjct: 65 LLYYTN-----------------------NLSSING-NIRPGIIHRLDKDTSGLILVAKS 100
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ SGRIE I RD +R +MA + + K
Sbjct: 101 NYAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDSKDRKKMAVVKENGK- 159
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S YKV+E + G +LVE +ETGRTHQ
Sbjct: 160 ----TAISNYKVVEQVE--GYSLVEVAIETGRTHQ 188
>gi|156740304|ref|YP_001430433.1| RluA family pseudouridine synthase [Roseiflexus castenholzii DSM
13941]
gi|156231632|gb|ABU56415.1| pseudouridine synthase, RluA family [Roseiflexus castenholzii DSM
13941]
Length = 315
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 133/226 (58%), Gaps = 33/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ L+ ++ + V+ GD+V + E QP+ AE +PL IVYEDD+V+V++KPA +VVH
Sbjct: 45 VLLNNRQVRPASPVRVGDVVTVQLPEPQPVGLVAEALPLQIVYEDDDVVVIDKPAGIVVH 104
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPG+ GTLVN ++ P +A ISG +RPGIVHRL
Sbjct: 105 PAPGHNRGTLVNALI--ARYPEMA----------------------ISG-DLRPGIVHRL 139
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
D+ TSGLLV A+++ + L Q + + ++Y+ + G ++S G I+ PI+R P +R+
Sbjct: 140 DRDTSGLLVAARNDRALHSLQAQQQARRMLKIYLVVVEGRMNESGGVIDAPIARHPTDRV 199
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RMA + G R A + ++V+E L G AL+E RLETGRTHQ
Sbjct: 200 RMAVMAGG------RPARTHWRVLEEL--GEYALIEARLETGRTHQ 237
>gi|335040592|ref|ZP_08533718.1| pseudouridine synthase, RluA family [Caldalkalibacillus thermarum
TA2.A1]
gi|334179562|gb|EGL82201.1| pseudouridine synthase, RluA family [Caldalkalibacillus thermarum
TA2.A1]
Length = 302
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 126/219 (57%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + D V + + L E E + LDIVYED++VLVVNKP +VVHPAPG+ +
Sbjct: 51 VKANYKLSENDYVVLRVPPPRELSIEPEQMDLDIVYEDEDVLVVNKPRGLVVHPAPGHYS 110
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG+L HC + S I+G +RPGIVHR+DK TSGL
Sbjct: 111 GTLVNGLLAHC-----------------------QNLSGINGI-LRPGIVHRIDKDTSGL 146
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L++Q H + R Y++L G +SG I PI R+P+NR +MA + G
Sbjct: 147 LMVAKNDRAHLSLAKQLSEHRVIRKYVALVHGQVGHNSGTINAPIGRNPHNRQQMAVVSG 206
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++VI+ L+E +LETGRTHQ
Sbjct: 207 ------GKPAVTHFQVIKRF--NRYTLIECQLETGRTHQ 237
>gi|427722328|ref|YP_007069605.1| ribosomal large subunit pseudouridine synthase D [Leptolyngbya sp.
PCC 7376]
gi|427354048|gb|AFY36771.1| ribosomal large subunit pseudouridine synthase D [Leptolyngbya sp.
PCC 7376]
Length = 308
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 120/216 (55%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ + GGD + TI L + E + LDI++EDD+ L+VNK A++VVHPAPG+ TGTL
Sbjct: 54 KYKLSGGDRLQVTIPAPVSLELQPEAMDLDILFEDDHFLIVNKAANVVVHPAPGHYTGTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
V+G+L HC + + I G RPGIVHRLDK T+G + +
Sbjct: 114 VHGLLAHCG----------------------DRLAGIGGVQ-RPGIVHRLDKDTTGAIAI 150
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H HL Q K T R Y+ + G P Q +G +E PI R +R +MA I
Sbjct: 151 AKTDQAHQHLQAQIKAKTARREYLGVVYGCPQQPAGIVEAPIDRHKIDRKKMAVIES--- 207
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A +R+++ E L G +L+ +RLETGRTHQ
Sbjct: 208 ---GRPALTRWELQERL--GNYSLLYYRLETGRTHQ 238
>gi|304320252|ref|YP_003853895.1| ribosomal large subunit pseudouridine synthase protein
[Parvularcula bermudensis HTCC2503]
gi|303299154|gb|ADM08753.1| putative ribosomal large subunit pseudouridine synthase protein
[Parvularcula bermudensis HTCC2503]
Length = 338
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 114/198 (57%), Gaps = 29/198 (14%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDA 109
EDIPL +++ED +++V+NKPA +VVHPA GN TGTLVN +LHHC
Sbjct: 80 EDIPLTVLFEDGDLIVINKPAGLVVHPAAGNWTGTLVNALLHHCG--------------- 124
Query: 110 EDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYI 169
+ S I G IRPGIVHRLDK TSG++V+AK++H+H LS F H I+R Y+
Sbjct: 125 -------DTLSGIGGV-IRPGIVHRLDKDTSGVMVIAKNDHAHQGLSALFAAHDIDRAYL 176
Query: 170 SLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ------ARHAASRYKVIEILA 223
+L G P +SG I P++R +R +M + G+ AR A ++
Sbjct: 177 ALCEGSPRPTSGTITWPLARSSGDRKKMTVVGVDRPEGKEAITHFARLDAYGIGRAKLPG 236
Query: 224 GGGSALVEWRLETGRTHQ 241
++LVE RLETGRTHQ
Sbjct: 237 DALASLVECRLETGRTHQ 254
>gi|302389579|ref|YP_003825400.1| ribosomal large subunit pseudouridine synthase D
[Thermosediminibacter oceani DSM 16646]
gi|302200207|gb|ADL07777.1| ribosomal large subunit pseudouridine synthase D
[Thermosediminibacter oceani DSM 16646]
Length = 307
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 127/215 (59%), Gaps = 31/215 (14%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ +K GD++ I +PL E E+IPLDI++ED +++VVNKP MVV+PAPGN +GTLV
Sbjct: 54 YKLKKGDVIVADIPSPKPLSLEPENIPLDIIHEDRDIIVVNKPRGMVVYPAPGNYSGTLV 113
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N +L+H +D+ S I+G +RPGIVHRLDK TSG++VVA
Sbjct: 114 NALLYHT----------------KDL-------SGINGV-MRPGIVHRLDKDTSGVIVVA 149
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K++ +H L+ QFK +++ Y+++ G + IE PI R P R+ MA + K+
Sbjct: 150 KNDMAHRELAMQFKNKLVKKTYLAVVWGNIPEDRATIEAPIGRHPAKRVEMAV---TAKN 206
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + +KV+E +E +ETGRTHQ
Sbjct: 207 G--KEAITHFKVLERFE--DFTFIEVNIETGRTHQ 237
>gi|374333001|ref|YP_005083185.1| RluA family pseudouridine synthase [Pseudovibrio sp. FO-BEG1]
gi|359345788|gb|AEV39162.1| pseudouridine synthase, RluA family [Pseudovibrio sp. FO-BEG1]
Length = 349
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 40/229 (17%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L + V GD + + E + + EDIPL IVYED++++V++KPA +VVHP GN T
Sbjct: 70 LEPKYRVCAGDTITLIVPEPEAAEPQPEDIPLTIVYEDEDLIVIDKPAGLVVHPGAGNPT 129
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTS 140
GTLVN ++HHC SS+S G RPGIVHR+DK T+
Sbjct: 130 GTLVNALIHHC-------------------------GSSLSGIGGVKRPGIVHRIDKDTT 164
Query: 141 GLLVVAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIR 196
GLLVVAK++ +H L+ QF H +ER Y +L G P+ + G ++ ++R NR +
Sbjct: 165 GLLVVAKNDMAHQGLAAQFADHGRTGPLERAYKALVWGAPTAAKGTVDANLARSTANRQK 224
Query: 197 MAAIPGSNKHGQARHAASRYKVIEILA----GGGSALVEWRLETGRTHQ 241
++ + K G RHA + ++V E ++L+E RLETGRTHQ
Sbjct: 225 ISVL----KTG-GRHAITHWQVQERFGPQDEAAVASLIECRLETGRTHQ 268
>gi|338971701|ref|ZP_08627085.1| ribosomal large subunit pseudouridine synthase D [Bradyrhizobiaceae
bacterium SG-6C]
gi|338235110|gb|EGP10216.1| ribosomal large subunit pseudouridine synthase D [Bradyrhizobiaceae
bacterium SG-6C]
Length = 324
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 124/224 (55%), Gaps = 37/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+++V GD + + P E EDIPL+IV+ED +++V++KP ++VVHPA G+ TGTL
Sbjct: 48 AYHVSAGDTITIDVPPAAPAEPEGEDIPLNIVFEDGDLIVIDKPKNLVVHPAAGHETGTL 107
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC S S G RPGIVHRLDK T+GL+VV
Sbjct: 108 VNALIAHCG-----------------------ASLSGIGGVKRPGIVHRLDKDTTGLMVV 144
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++ +H LS QF H + R Y++ GVP++ SG I PI R P+ R +MA
Sbjct: 145 AKNDRAHQSLSAQFADHGRTGEMRRGYMAFVWGVPNRKSGTINEPIDRHPHTREKMAVRQ 204
Query: 202 GSNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
G R A + ++V+E G ++L+ +LETGRTHQ
Sbjct: 205 G------GREAVTHWEVLETFTGKDGKPVASLLACQLETGRTHQ 242
>gi|91762258|ref|ZP_01264223.1| pseudouridylate synthase [Candidatus Pelagibacter ubique HTCC1002]
gi|91718060|gb|EAS84710.1| pseudouridylate synthase [Candidatus Pelagibacter ubique HTCC1002]
Length = 326
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 122/221 (55%), Gaps = 31/221 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S S V GD +N I E + + + L IVYEDD++L++NKPA +++HP GN
Sbjct: 52 SPSKKVLSGDEINLQIPEPKEASLKPYNFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDE 111
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
T+VN ++H+ N+++ S G +RPGIVHR+DK TSGL+
Sbjct: 112 TIVNALMHY---------NKDSLSTI--------------GDELRPGIVHRIDKDTSGLI 148
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
V+AK+ +H +LS QF HTI RVY L G SSG+I+ I+R NR M S
Sbjct: 149 VIAKNNETHENLSHQFSEHTITRVYQLLIWGKLRPSSGKIDTFITRSSKNRQMMEV---S 205
Query: 204 NKHGQARHAASRYKVIEILAGGGS---ALVEWRLETGRTHQ 241
N G + A + YK IEI + +LVE RLETGRTHQ
Sbjct: 206 NSKG--KRAITNYKTIEIFENDKTPTLSLVECRLETGRTHQ 244
>gi|164687826|ref|ZP_02211854.1| hypothetical protein CLOBAR_01470 [Clostridium bartlettii DSM
16795]
gi|164603101|gb|EDQ96566.1| pseudouridine synthase, RluA family [Clostridium bartlettii DSM
16795]
Length = 307
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 123/216 (56%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK D V I + L +DIP+DIVYEDD++L+VNKP MVVHPAPGN TL
Sbjct: 57 KYAVKEDDSVVIEIPAPKLLEVIPQDIPIDIVYEDDDLLIVNKPQDMVVHPAPGNYENTL 116
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN IL+HC ++ SSI+G IRPGIVHR+DK TSG+L++
Sbjct: 117 VNAILYHC----------------------KDNLSSINGV-IRPGIVHRIDKDTSGILMI 153
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK+ ++H L+EQ K H+I R Y + GV + ++ PI R+P +R++MA +
Sbjct: 154 AKNNNAHNSLAEQLKDHSITREYEFICHGVVKEDKITVDRPIGRNPKDRLKMAIV----- 208
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++VI+ ++ LETGRTHQ
Sbjct: 209 -KDGKRAVTHFEVIKRYENFTH--MKANLETGRTHQ 241
>gi|317129279|ref|YP_004095561.1| pseudouridine synthase [Bacillus cellulosilyticus DSM 2522]
gi|315474227|gb|ADU30830.1| pseudouridine synthase, RluA family [Bacillus cellulosilyticus DSM
2522]
Length = 305
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 120/216 (55%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD + + PL AE++ LDI+YED +VLVVNKP MVVHPAPG+ TGTL
Sbjct: 50 KYKVKAGDHIEIREPDPIPLEIPAENLNLDIIYEDGDVLVVNKPRGMVVHPAPGHYTGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+++HC D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 110 VNGLMYHC----------------HDL-------SGINGV-MRPGIVHRIDKDTSGLLMV 145
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q K +R Y ++ SG+ G I+ PI R+P +R M
Sbjct: 146 AKNDRAHESLVNQLKNKETKRRYYAIVSGIIPHDKGTIDAPIGRNPEDRQSMMVT----- 200
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R A + ++V+E LV LETGRTHQ
Sbjct: 201 EKNSRDAVTHFQVVERFY--RHTLVSCELETGRTHQ 234
>gi|114566812|ref|YP_753966.1| pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337747|gb|ABI68595.1| ribosomal large subunit pseudouridine synthase D [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 305
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ +K G+ + I ++ L+ +A+DIPL +Y+D ++ V++KP MV HPA GN TL
Sbjct: 53 SYRLKAGEEIIVEIPAVRELKLKAQDIPLSFIYQDKDIAVIDKPKGMVAHPAHGNWENTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L H L L+ N E +RPGIVHRLDK TSG++V+
Sbjct: 113 VNALLFH--LKDLSGINGE----------------------LRPGIVHRLDKDTSGVMVI 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K H+I R YI+L G+ ++ G IE PI R +R +MA I G
Sbjct: 149 AKNDMAHRQLAAQIKDHSINREYITLVHGIIKENLGSIEAPIGRSKQDRKKMAVIAG--- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A S Y+V+E L G L++ +L TGRTHQ
Sbjct: 206 ---GRPAVSNYQVLERL--GNYTLLKVKLLTGRTHQ 236
>gi|27262446|gb|AAN87504.1| Ribosomal large subunit pseudouridine synthase D [Heliobacillus
mobilis]
Length = 327
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 126/219 (57%), Gaps = 30/219 (13%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD + +E E+IP+DIVY+D +V V+NK A +VVHPA G+ +
Sbjct: 70 VKANYRLRPGDRIEVVPAEPVSTEIIPENIPIDIVYQDAHVAVINKSAGLVVHPAEGHTS 129
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+H +D+S I+G +RPGIVHR+DK TSGL
Sbjct: 130 GTLVNALLYHI----------------KDLS-------GING-ELRPGIVHRIDKDTSGL 165
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK + +H HL+EQ K H + R Y+++ G+ +GRI+ PI RDP +R +MA +
Sbjct: 166 LVVAKHDEAHIHLAEQVKDHLVRREYLAIVHGIIGAETGRIDAPIGRDPKDRQKMAVV-- 223
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + + +V+E G +LV LETGRTHQ
Sbjct: 224 ----SSGKASVTHLRVLERFPESGFSLVRCNLETGRTHQ 258
>gi|315646052|ref|ZP_07899173.1| pseudouridine synthase, RluA family protein [Paenibacillus vortex
V453]
gi|315278813|gb|EFU42127.1| pseudouridine synthase, RluA family protein [Paenibacillus vortex
V453]
Length = 323
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 129/216 (59%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD + ++ + + EDIPL+I +ED +V+VVNKP MVVHPAPG+++GTL
Sbjct: 72 NYKVSQGDHIVLSVPQPSVVEIIPEDIPLEIAFEDRDVIVVNKPRGMVVHPAPGHSSGTL 131
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC +D+S I+G +RPGIVHR+DK T+GL++
Sbjct: 132 VNALMFHC----------------KDLS-------GING-ELRPGIVHRIDKDTTGLIMA 167
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +HA L+ Q K H++ R Y++L G S G I+ PI RD +R ++ + N
Sbjct: 168 AKNDKAHASLAAQLKDHSVNRRYLALVHGNISHDQGTIDAPIGRDAQDR-KLYTVTDRN- 225
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++HA + + V+E G +L+E +LETGRTHQ
Sbjct: 226 ---SKHAVTHFTVVERF--GDYSLLELKLETGRTHQ 256
>gi|390443530|ref|ZP_10231320.1| RluA family pseudouridine synthase [Nitritalea halalkaliphila LW7]
gi|389666411|gb|EIM77860.1| RluA family pseudouridine synthase [Nitritalea halalkaliphila LW7]
Length = 349
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 114/193 (59%), Gaps = 30/193 (15%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEAFSD 108
EDIPLDIV+ED+ +LVVNKPA MVVHPA GN +GTLVN ++HH LPTL
Sbjct: 96 EDIPLDIVFEDETLLVVNKPAGMVVHPAHGNWSGTLVNALVHHFQQLPTLP--------- 146
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
G S RPG+VHR+DK TSGLLV+AK E + L+ QF H+IER Y
Sbjct: 147 ---------------GNSGRPGLVHRIDKDTSGLLVIAKTEDAMTSLARQFFDHSIEREY 191
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
+L G P +G I+ I R +R M A P ++ Q + A + +KV++ L +
Sbjct: 192 YALVWGEPQSETGTIDAAIGRSAKDRKVMEAFPDNS---QGKPARTHWKVLQNLR--YVS 246
Query: 229 LVEWRLETGRTHQ 241
L+ +LETGRTHQ
Sbjct: 247 LIACQLETGRTHQ 259
>gi|331269364|ref|YP_004395856.1| RluA family pseudouridine synthase [Clostridium botulinum
BKT015925]
gi|329125914|gb|AEB75859.1| pseudouridine synthase, RluA family [Clostridium botulinum
BKT015925]
Length = 304
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 131/221 (59%), Gaps = 33/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
DK S ++ +K D V E + + E+I +DI+YED++++V+NK MVVHPA N
Sbjct: 48 DKKS-NYKLKLHDSVVVNNIEKEDKKINPENIEMDILYEDNDIIVINKSQGMVVHPATSN 106
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
+GTLVN +L+HC TL++ N + RPGIVHR+DK TS
Sbjct: 107 YSGTLVNALLYHCD--TLSTLNDDT----------------------RPGIVHRIDKDTS 142
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
G+LVVAK+ +H L+EQ K H+++R YI++ G+ + +G ++ P+ R+P +RI+MA +
Sbjct: 143 GVLVVAKNNKAHEILAEQLKEHSMKREYIAVVEGIVKEENGLVDEPLGRNPKDRIKMAVV 202
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G ++A + Y+V++ + LV+ LETGRTHQ
Sbjct: 203 EG------GKNAVTHYEVLKRFK--KNTLVKCILETGRTHQ 235
>gi|349686560|ref|ZP_08897702.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Gluconacetobacter oboediens 174Bp2]
Length = 323
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 117/213 (54%), Gaps = 28/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ G I P + +DI LDI+YED +++V++KPA MVVHPAPGN GTLVN
Sbjct: 60 VRAGMCYEIHIPPAIPATPQGQDIALDILYEDRDLIVLDKPAGMVVHPAPGNEDGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC E + I G RPGIVHRLDK TSG++V AK
Sbjct: 120 LLAHCG----------------------EGLTGIGGER-RPGIVHRLDKDTSGIMVAAKT 156
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E +H LS F I+R Y ++ GVPS +SG + I RD +R RMA I +G
Sbjct: 157 EMAHQALSLAFAERRIDRAYQAICWGVPSPASGSFDGAIGRDRRDRKRMAVI----ANGG 212
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + Y+V++ GG A VE RL TGRTHQ
Sbjct: 213 GKMALTHYRVLDTFH-GGLAHVECRLATGRTHQ 244
>gi|312869892|ref|ZP_07730031.1| pseudouridine synthase, RluA family [Lactobacillus oris PB013-T2-3]
gi|417884854|ref|ZP_12529015.1| pseudouridine synthase, RluA family [Lactobacillus oris F0423]
gi|311094477|gb|EFQ52782.1| pseudouridine synthase, RluA family [Lactobacillus oris PB013-T2-3]
gi|341596810|gb|EGS39396.1| pseudouridine synthase, RluA family [Lactobacillus oris F0423]
Length = 304
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 115/210 (54%), Gaps = 33/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V Q + E IPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+
Sbjct: 58 GDQVVIEPEAPQKVDLTPEKIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLY 117
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
H L S+I+G RPGIVHR+DK TSGLL+VAK++ +
Sbjct: 118 HSPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAKNDLA 152
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K T +R Y++L GV Q +G I+ PI R +R + A + RH
Sbjct: 153 HRSLAAQLKAKTNQREYVALVHGVIKQDAGTIDAPIGRSKKDRKKQAVV------SDGRH 206
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + +KV+ LV RLETGRTHQ
Sbjct: 207 AVTHFKVLRRFR--HYTLVSCRLETGRTHQ 234
>gi|126664287|ref|ZP_01735278.1| ribosomal large subunit pseudouridine synthase D [Flavobacteria
bacterium BAL38]
gi|126623707|gb|EAZ94404.1| ribosomal large subunit pseudouridine synthase D [Flavobacteria
bacterium BAL38]
Length = 346
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 125/219 (57%), Gaps = 35/219 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAE---AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
++ VK GD+V ++ P + E+IPLDIVYEDD +LV+NKPA MVVHP GN +
Sbjct: 66 NYKVKAGDVVRLVLA--HPTYEQLLTPENIPLDIVYEDDQLLVINKPAGMVVHPGHGNYS 123
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN + +H F + +S RPG+VHR+DK T+GL
Sbjct: 124 GTLVNALAYH-------------------------FENLPMNSSERPGLVHRIDKDTTGL 158
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK E + A+LS+QF T ER Y++L G + G +E I R NR+RM A+
Sbjct: 159 LVVAKTELAMAYLSKQFAEKTSEREYVALVWGNIEEDEGTVEGNIGRHDTNRMRM-AVHE 217
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
S++ G+ A + YKV+E G LV +LETGRTHQ
Sbjct: 218 SDEKGKP--AVTHYKVLERF--GYVTLVSCQLETGRTHQ 252
>gi|118586926|ref|ZP_01544359.1| pseudouridylate synthases, 23S RNA-specific [Oenococcus oeni ATCC
BAA-1163]
gi|421185002|ref|ZP_15642416.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB318]
gi|421187233|ref|ZP_15644609.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB418]
gi|118432653|gb|EAV39386.1| pseudouridylate synthases, 23S RNA-specific [Oenococcus oeni ATCC
BAA-1163]
gi|399964060|gb|EJN98715.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB418]
gi|399965449|gb|EJO00022.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB318]
Length = 308
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 118/213 (55%), Gaps = 33/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ GD V + ++ E IPLDIVYEDD+++VVNKP MVVHP+ G++ TLVN
Sbjct: 60 VQDGDHVVIKVPPVKKTELLPEKIPLDIVYEDDDLIVVNKPQGMVVHPSAGHSEHTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L H L S+I+G RPGIVHR+DK TSGLL+VAK+
Sbjct: 120 LLSHAPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAKN 154
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+H HLS K H R Y+++ G S+ G I+ PI RDP NR + A +
Sbjct: 155 NFAHEHLSLDLKSHKTGRKYLAIVHGNFSEKRGTIKAPIDRDPKNRQKQAVV------AN 208
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV+E + +L+E LETGRTHQ
Sbjct: 209 GREAITHFKVLESFS--NYSLIEAVLETGRTHQ 239
>gi|99081958|ref|YP_614112.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp.
TM1040]
gi|99038238|gb|ABF64850.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp.
TM1040]
Length = 337
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 129/226 (57%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V G ++ T+ E + EDIPLD+++ED +++V+NKPA MVVHPAPG+ +GTLVN
Sbjct: 51 RVAEGALIVITVEEAEDSHIGPEDIPLDVIHEDADLIVINKPAGMVVHPAPGSPSGTLVN 110
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC D+S G RPGIVHR+DK TSGLLVVAK
Sbjct: 111 ALLHHCG---------------ADLSG--------VGGVKRPGIVHRIDKETSGLLVVAK 147
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPG 202
+ +H L+ QF+ HT+ER Y ++ GVP + R+ S +P N +++ A
Sbjct: 148 SDAAHQGLAAQFERHTVERYYQAVCYGVPDGNDPRLRGVRGTSFEPGNILKITTQLARHK 207
Query: 203 SNKHGQA------RHAASRYKVIEIL-AGGGSALVEWRLETGRTHQ 241
+++ QA RHA +R ++IE A ++LVE LETGRTHQ
Sbjct: 208 TDRQRQAVLFEGGRHAVTRARIIEAFGAPAAASLVECWLETGRTHQ 253
>gi|421074245|ref|ZP_15535285.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
gi|392527751|gb|EIW50837.1| pseudouridine synthase, RluA family [Pelosinus fermentans JBW45]
Length = 310
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ V+ D + +I E++ L AE+IPL I+YED++++++NK MVVHPA GN
Sbjct: 51 VKANYKVQALDDIQVSIPEIKTLELTAEEIPLAILYEDNDIIIINKSRGMVVHPAAGNYN 110
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L HC ED+ S I+G + RPGIVHRLDK TSG+
Sbjct: 111 GTLVNALLEHC----------------EDL-------SGINGVA-RPGIVHRLDKDTSGV 146
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
+VVAK + +H L++Q K T R Y+++ G + G I+ PI R P++R +M+
Sbjct: 147 MVVAKSDRAHVSLAKQIKDRTASRRYLAIVYGNIKEDHGVIKAPIGRHPSDRKKMSVTFT 206
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++K A ++++V+E G LVE +L TGRTHQ
Sbjct: 207 NSK-----EATTKFRVMERF--GDYTLVECKLLTGRTHQ 238
>gi|148544158|ref|YP_001271528.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri DSM 20016]
gi|184153530|ref|YP_001841871.1| pseudouridylate synthase [Lactobacillus reuteri JCM 1112]
gi|227364587|ref|ZP_03848648.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM2-3]
gi|325682298|ref|ZP_08161815.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM4-1A]
gi|148531192|gb|ABQ83191.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri DSM 20016]
gi|183224874|dbj|BAG25391.1| pseudouridylate synthase [Lactobacillus reuteri JCM 1112]
gi|227070424|gb|EEI08786.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM2-3]
gi|324978137|gb|EGC15087.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri MM4-1A]
Length = 303
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 116/210 (55%), Gaps = 33/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V E Q + EDIPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+
Sbjct: 58 GDHVQIIPEEPQKIDLAPEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLY 117
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
H L S+I+G RPGIVHR+DK TSGLL+VAK++ +
Sbjct: 118 HSPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAKNDMA 152
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K T +R Y++L GV + G I+ P+ R +R + A + RH
Sbjct: 153 HRSLTAQLKAKTNKREYVALVHGVIKEDKGTIDAPLGRSLKDRKKQAVVV------DGRH 206
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E LV +LETGRTHQ
Sbjct: 207 AVTHFNVLERFK--NYTLVACQLETGRTHQ 234
>gi|346306277|ref|ZP_08848435.1| hypothetical protein HMPREF9457_00144 [Dorea formicigenerans
4_6_53AFAA]
gi|345900082|gb|EGX69910.1| hypothetical protein HMPREF9457_00144 [Dorea formicigenerans
4_6_53AFAA]
Length = 304
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 121/210 (57%), Gaps = 30/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V I E + E+IPLDI+YED++V+VVNKP MVVHPAPG+ +GTLVN +++
Sbjct: 56 GDRVEVCIPEAKEPDINPENIPLDILYEDEDVIVVNKPKQMVVHPAPGHYSGTLVNALMY 115
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC E S I+G S RPGIVHR+D T+G L++ K++ +
Sbjct: 116 HCG---------------------NEL-SGINGTS-RPGIVHRIDMDTTGSLIICKNDMA 152
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K H+I R+Y ++ G + G + PI R P +R +M +I N AR+
Sbjct: 153 HQSLAVQLKEHSINRIYEAIVHGNIKEEEGTVNAPIGRHPTDRKKM-SIHAKN----ARN 207
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + YKV++ G ++ +LETGRTHQ
Sbjct: 208 AITHYKVLKRF--GNYTYIQCKLETGRTHQ 235
>gi|333904809|ref|YP_004478680.1| RNA pseudouridylate synthase [Streptococcus parauberis KCTC 11537]
gi|333120074|gb|AEF25008.1| RNA pseudouridylate synthase [Streptococcus parauberis KCTC 11537]
gi|456370694|gb|EMF49590.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
parauberis KRS-02109]
gi|457095660|gb|EMG26131.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
parauberis KRS-02083]
Length = 295
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++VK GD++ I E + L +AEDIPLD+VYED+++ ++NKP MVVHP+ G+++GT+
Sbjct: 46 KYSVKAGDIITYEIQEEEVLDYQAEDIPLDVVYEDEDLAIINKPQGMVVHPSAGHSSGTM 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+ +D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 106 VNALLYQI----------------KDL-------SGINGV-VRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+++ K R Y+++ G G IE PI R +R + A I
Sbjct: 142 AKNDAAHQALADELKAKKSLRKYLAIVHGNLPNDRGIIEAPIGRSEKDRKKQAVI----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R++VIE G LVE LETGRTHQ
Sbjct: 197 -ARGKEAVTRFQVIERF--GDYTLVELTLETGRTHQ 229
>gi|166031852|ref|ZP_02234681.1| hypothetical protein DORFOR_01553 [Dorea formicigenerans ATCC
27755]
gi|166028305|gb|EDR47062.1| pseudouridine synthase, RluA family [Dorea formicigenerans ATCC
27755]
Length = 302
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 123/210 (58%), Gaps = 30/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V I E + E E+IPLDI+YED++V+VVNKP MVVHPAPG+ +GTLVN +++
Sbjct: 56 GDRVEVCIPEAKEPDIEPENIPLDILYEDEDVIVVNKPKQMVVHPAPGHYSGTLVNALMY 115
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC N+ S I+G S RPGIVHR+D T+G L++ K++ +
Sbjct: 116 HC-------GNE---------------LSGINGTS-RPGIVHRIDMDTTGSLIICKNDMA 152
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q + H+I R+Y ++ G + G + PI R P +R +M +I N AR+
Sbjct: 153 HQSLAVQLEEHSINRIYEAIVHGNIKEEEGTVNAPIGRHPTDRKKM-SIHAKN----ARN 207
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + YKV++ G ++ +LETGRTHQ
Sbjct: 208 AITHYKVLKRF--GDYTYIQCKLETGRTHQ 235
>gi|417917067|ref|ZP_12560629.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
SK236]
gi|342830716|gb|EGU65041.1| pseudouridine synthase, RluA family [Streptococcus parasanguinis
SK236]
Length = 296
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 124/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E++ + EAED+PLDIVYED +V+VVNK MVVHP+ G+ +GTL
Sbjct: 46 KYTVKEGDIIQYEVPEVEEVSYEAEDLPLDIVYEDQDVVVVNKSQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H +D+ S I+G +RPGIVHR+DK TSGLL++
Sbjct: 106 VNALLYHV----------------KDL-------SGING-ELRPGIVHRIDKDTSGLLMI 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+E+ K R Y ++ G G IE PI R +R + A
Sbjct: 142 AKNDQAHVALAEELKDKKSLRKYWAIVHGNLPNDRGMIEAPIGRSEKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R++V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFQVLERF--GNYTLVELQLETGRTHQ 229
>gi|16331032|ref|NP_441760.1| hypothetical protein slr1629 [Synechocystis sp. PCC 6803]
gi|383322775|ref|YP_005383628.1| hypothetical protein SYNGTI_1866 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325944|ref|YP_005386797.1| hypothetical protein SYNPCCP_1865 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491828|ref|YP_005409504.1| hypothetical protein SYNPCCN_1865 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437095|ref|YP_005651819.1| hypothetical protein SYNGTS_1866 [Synechocystis sp. PCC 6803]
gi|451815190|ref|YP_007451642.1| hypothetical protein MYO_118830 [Synechocystis sp. PCC 6803]
gi|3915482|sp|P74346.1|Y1629_SYNY3 RecName: Full=Uncharacterized RNA pseudouridine synthase slr1629;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|1653527|dbj|BAA18440.1| slr1629 [Synechocystis sp. PCC 6803]
gi|339274127|dbj|BAK50614.1| hypothetical protein SYNGTS_1866 [Synechocystis sp. PCC 6803]
gi|359272094|dbj|BAL29613.1| hypothetical protein SYNGTI_1866 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275264|dbj|BAL32782.1| hypothetical protein SYNPCCN_1865 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278434|dbj|BAL35951.1| hypothetical protein SYNPCCP_1865 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407961601|dbj|BAM54841.1| hypothetical protein BEST7613_5910 [Bacillus subtilis BEST7613]
gi|451781159|gb|AGF52128.1| hypothetical protein MYO_118830 [Synechocystis sp. PCC 6803]
Length = 327
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 29/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K GD + I EL PL A++IPLDI+YED+ ++++NKPA +VVHP PG+ GT+VN
Sbjct: 73 LKTGDRLVVNIPELIPLDVVAQNIPLDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNA 132
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC P LA G RPGIVHRLDK T+G +VVAK
Sbjct: 133 LLAHC--PDLAG----------------------IGGVQRPGIVHRLDKDTTGAMVVAKT 168
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E + +L Q K T R+Y + G P + G + +P+ R P +R +M +P K G
Sbjct: 169 ELALHNLQVQLKEKTARRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQKMGIVP-VEKGG- 226
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++++E + G + +E++LETGRTHQ
Sbjct: 227 -REAVTHWRLLERI--GNHSWLEFQLETGRTHQ 256
>gi|332654861|ref|ZP_08420603.1| ribosomal large subunit pseudouridine synthase D [Ruminococcaceae
bacterium D16]
gi|332516204|gb|EGJ45812.1| ribosomal large subunit pseudouridine synthase D [Ruminococcaceae
bacterium D16]
Length = 301
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 121/210 (57%), Gaps = 31/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G +V + + QP+ ++IPLD+VYEDD+V+VVNKP +VVHPAPG+ GTLVN +L+
Sbjct: 56 GMVVEVLLPDPQPVEIVPQNIPLDVVYEDDDVIVVNKPVGLVVHPAPGHPDGTLVNALLY 115
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC + S I+G +RPGIVHR+D+ TSGL++ AK++ +
Sbjct: 116 HCG----------------------DSLSGING-ELRPGIVHRIDRDTSGLIIAAKNDRA 152
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q + HT+ RVY ++ G + G + PI R P +R +MA P + R
Sbjct: 153 HLALAAQLQDHTLARVYEAVAVGGFKEDRGTVNAPIGRHPVDRKKMAVDP------KGRP 206
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + +KV+ G +E RLETGRTHQ
Sbjct: 207 AVTHWKVLGRYP--GCTHLECRLETGRTHQ 234
>gi|227544604|ref|ZP_03974653.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri CF48-3A]
gi|338204549|ref|YP_004650694.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri SD2112]
gi|227185411|gb|EEI65482.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri CF48-3A]
gi|336449789|gb|AEI58404.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
reuteri SD2112]
Length = 303
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 116/210 (55%), Gaps = 33/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V E Q + EDIPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+
Sbjct: 58 GDHVQIIPEEPQKIDLTPEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPNHTLVNALLY 117
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
H L S+I+G RPGIVHR+DK TSGLL+VAK++ +
Sbjct: 118 HSPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAKNDMA 152
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K T +R Y++L GV + G I+ P+ R +R + A + RH
Sbjct: 153 HRSLTAQLKAKTNKREYVALVHGVIKEDKGTIDAPLGRSLKDRKKQAVV------VDGRH 206
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E LV +LETGRTHQ
Sbjct: 207 AITHFNVLERFK--NYTLVACQLETGRTHQ 234
>gi|428220400|ref|YP_007104570.1| RluA family pseudouridine synthase [Synechococcus sp. PCC 7502]
gi|427993740|gb|AFY72435.1| pseudouridine synthase, RluA family [Synechococcus sp. PCC 7502]
Length = 301
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 123/213 (57%), Gaps = 32/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K GD + + E+QPL + + IPL+I+YED+++LV+NKP +VVHPAPG++ TLVN
Sbjct: 54 LKVGDRLILEVPEVQPLDLQPQSIPLEILYEDEHLLVINKPVGLVVHPAPGHSDLTLVNA 113
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC P L S I+G RPGIVHRLDK TSG +VVAK
Sbjct: 114 LLAHC--PNL---------------------SGINGVQ-RPGIVHRLDKDTSGAIVVAKT 149
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L Q + T +R Y+ + +G P SG + PI R ++R +MA +
Sbjct: 150 DQAHQSLQAQIQAKTAKREYLGIVNGAPKTLSGTVNAPIGRHKSDRKKMAVVEN------ 203
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V E L G +LV++ LETGRTHQ
Sbjct: 204 GRSAITHWEVQERL--GNYSLVKFDLETGRTHQ 234
>gi|116491102|ref|YP_810646.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
PSU-1]
gi|290890605|ref|ZP_06553676.1| hypothetical protein AWRIB429_1066 [Oenococcus oeni AWRIB429]
gi|419757659|ref|ZP_14283990.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB304]
gi|419857648|ref|ZP_14380353.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB202]
gi|419858333|ref|ZP_14381006.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
DSM 20252 = AWRIB129]
gi|421187322|ref|ZP_15644682.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB419]
gi|421189764|ref|ZP_15647078.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB422]
gi|421190779|ref|ZP_15648063.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB548]
gi|421193699|ref|ZP_15650945.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB553]
gi|421194793|ref|ZP_15652009.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB568]
gi|421195995|ref|ZP_15653187.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB576]
gi|116091827|gb|ABJ56981.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
PSU-1]
gi|290479733|gb|EFD88386.1| hypothetical protein AWRIB429_1066 [Oenococcus oeni AWRIB429]
gi|399905617|gb|EJN93054.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB304]
gi|399969121|gb|EJO03544.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB419]
gi|399971858|gb|EJO06097.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB553]
gi|399972854|gb|EJO07053.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB422]
gi|399973475|gb|EJO07640.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB548]
gi|399977186|gb|EJO11177.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB568]
gi|399978149|gb|EJO12110.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB576]
gi|410497632|gb|EKP89103.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
AWRIB202]
gi|410498769|gb|EKP90214.1| ribosomal large subunit pseudouridine synthase D [Oenococcus oeni
DSM 20252 = AWRIB129]
Length = 304
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 118/213 (55%), Gaps = 33/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ GD V + ++ E IPLDIVYEDD+++VVNKP MVVHP+ G++ TLVN
Sbjct: 56 VQDGDHVVIKVPPVKKTELLPEKIPLDIVYEDDDLIVVNKPQGMVVHPSAGHSEHTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L H L S+I+G RPGIVHR+DK TSGLL+VAK+
Sbjct: 116 LLSHAPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAKN 150
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+H HLS K H R Y+++ G S+ G I+ PI RDP NR + A +
Sbjct: 151 NFAHEHLSLDLKSHKTGRKYLAIVHGNFSEKRGTIKAPIDRDPKNRQKQAVV------AN 204
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV+E + +L+E LETGRTHQ
Sbjct: 205 GREAITHFKVLESFS--NYSLIEAVLETGRTHQ 235
>gi|354604250|ref|ZP_09022241.1| hypothetical protein HMPREF9450_01156 [Alistipes indistinctus YIT
12060]
gi|353348017|gb|EHB92291.1| hypothetical protein HMPREF9450_01156 [Alistipes indistinctus YIT
12060]
Length = 363
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 113/193 (58%), Gaps = 30/193 (15%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEAFSD 108
E+IPLDI YEDD++++VNK A MVVHP GN +GTLVN + +H LP + +
Sbjct: 105 ENIPLDIRYEDDDLIIVNKAAGMVVHPGHGNYSGTLVNALTYHLKDLPLFQNGD------ 158
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
+R G+VHR+DK TSG+LV+AK+E +HA L++QF HTI+RVY
Sbjct: 159 ------------------MRAGLVHRIDKNTSGILVIAKNERAHARLAKQFYDHTIDRVY 200
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
+L G G + + R +R++MA P Q +HA + YKV+E L G
Sbjct: 201 CALAWGNMESEEGTVTGNVGRSLKDRMKMAVFPDGT---QGKHAVTHYKVLERL--GYVN 255
Query: 229 LVEWRLETGRTHQ 241
L+E RLETGRTHQ
Sbjct: 256 LLECRLETGRTHQ 268
>gi|260583810|ref|ZP_05851558.1| ribosomal large subunit pseudouridine synthase D [Granulicatella
elegans ATCC 700633]
gi|260158436|gb|EEW93504.1| ribosomal large subunit pseudouridine synthase D [Granulicatella
elegans ATCC 700633]
Length = 301
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 126/219 (57%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ K GD V I E + L AE+IPL+IV+ED+++LV+NKP+ MVVHP+ G++T
Sbjct: 49 VKANYKAKDGDHVTIQIEEEEELTVLAENIPLEIVFEDEHLLVINKPSGMVVHPSKGHST 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+H + +S E S RPGIVHR+DK TSGL
Sbjct: 109 GTLVNALLYHV----------------DQLSKGSE--------SYRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK +H LS Q H++ R Y+++ G +G ++ P++RDP+NR++
Sbjct: 145 LVVAKTPQAHVGLSNQLMDHSMTRSYVAIVEGSFEHITGTVDAPLARDPHNRLKRCV--- 201
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + + VI+ L ++++ LETGRTHQ
Sbjct: 202 ---QKEGKQAITHFTVIQALK--ETSVLRLNLETGRTHQ 235
>gi|229086457|ref|ZP_04218629.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-44]
gi|228696774|gb|EEL49587.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
Rock3-44]
Length = 302
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 125/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + I E + L AED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKENDEIAVAIPEPEELDIRAEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+++HC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMYHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R MA ++
Sbjct: 149 AKNDMAHESLVNQLVEKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMAV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|433449188|ref|ZP_20412052.1| 23S rRNA-specific pseudouridylate synthase [Weissella ceti NC36]
gi|429538702|gb|ELA06740.1| 23S rRNA-specific pseudouridylate synthase [Weissella ceti NC36]
Length = 304
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 124/216 (57%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++VK GD + TI E L + E+IPL+IVYEDD+V+VVNKP MVVHPA G+ +GTL
Sbjct: 50 KYSVKPGDEIVVTIPEPVELDVKPENIPLEIVYEDDDVIVVNKPQGMVVHPALGHPSGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H +L SSI+G IRPGIVHR+DK TSGLL+V
Sbjct: 110 VNALMYHTTL------------------------SSINGV-IRPGIVHRIDKDTSGLLMV 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H +LS Q K R Y +L G +++G I+ PI R +R + +
Sbjct: 145 AKNDAAHENLSAQLKDKKNLRQYYALVHGEFVENTGTIKAPIGRSKADRKKQGIV----- 199
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A S ++V+E G L++ LETGRTHQ
Sbjct: 200 -ADGREAVSHFEVVERFV--GYTLLKVNLETGRTHQ 232
>gi|254473085|ref|ZP_05086483.1| ribosomal large subunit pseudouridine synthase D [Pseudovibrio sp.
JE062]
gi|211957806|gb|EEA93008.1| ribosomal large subunit pseudouridine synthase D [Pseudovibrio sp.
JE062]
Length = 349
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 40/229 (17%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L + V GD + + E + + EDIPL IVYED++++V++KPA +VVHP GN T
Sbjct: 70 LEPKYRVCAGDTITLIVPEPEAAEPQPEDIPLTIVYEDEDLIVIDKPAGLVVHPGAGNPT 129
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTS 140
GTLVN ++HHC SS+S G RPGIVHR+DK T+
Sbjct: 130 GTLVNALIHHC-------------------------GSSLSGIGGVKRPGIVHRIDKDTT 164
Query: 141 GLLVVAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIR 196
GLLV+AK++ +H L+ QF H +ER Y +L G P+ + G ++ ++R NR +
Sbjct: 165 GLLVIAKNDMAHQGLAAQFADHGRTGPLERAYKALVWGAPTAAKGTVDANLARSTANRQK 224
Query: 197 MAAIPGSNKHGQARHAASRYKVIEILA----GGGSALVEWRLETGRTHQ 241
++ + K G RHA + ++V E ++L+E RLETGRTHQ
Sbjct: 225 ISVL----KTG-GRHAITHWQVQERFGPQDEAAVASLIECRLETGRTHQ 268
>gi|49475182|ref|YP_033223.1| ribosomal large subunit pseudouridine synthase D [Bartonella
henselae str. Houston-1]
gi|49237987|emb|CAF27192.1| Ribosomal large subunit pseudouridine synthase D [Bartonella
henselae str. Houston-1]
Length = 334
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 124/222 (55%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K ++ T+ L+ E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN
Sbjct: 56 LKSNQIIELTMPALRDAEPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
++HHC + S I G RPGIVHRLDK TSG++VVAK+
Sbjct: 116 LIHHCG----------------------KSLSGIGGVK-RPGIVHRLDKNTSGVMVVAKN 152
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+ +H LS QF H ++R Y +L G P+++ I+ P+ R P+NR + A +
Sbjct: 153 DLAHKSLSAQFFDHGRTSALDRRYHALIWGSPNRNVWTIDAPVGRSPHNRTKQAVVYNQC 212
Query: 205 KHGQARHAASRYKVIEILAGGG-----SALVEWRLETGRTHQ 241
H ARHA + + ++E ++L+E RLETGRTHQ
Sbjct: 213 LH--ARHAVTHFSLLEQYGTCADKTPFASLLECRLETGRTHQ 252
>gi|126729199|ref|ZP_01745013.1| putative Pseudouridine synthase, Rlu [Sagittula stellata E-37]
gi|126710189|gb|EBA09241.1| putative Pseudouridine synthase, Rlu [Sagittula stellata E-37]
Length = 342
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 120/233 (51%), Gaps = 48/233 (20%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD++ + E + A+DIPL+IV+ED ++LVVNKPA MVVHPAPG GTLVN
Sbjct: 57 KVAEGDVLEIAVPEAEDYDVVAQDIPLEIVFEDADLLVVNKPAGMVVHPAPGTPDGTLVN 116
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVV 145
+LHH F +S G RPGIVHR+DK TSGLLVV
Sbjct: 117 ALLHH-------------------------FGGELSGVGGEKRPGIVHRIDKDTSGLLVV 151
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGR----------------IEVPISR 189
AK + +H L+ QF+ HT R Y+++ GVP + R I ++R
Sbjct: 152 AKSDRAHHGLARQFEKHTARRAYLAVVHGVPDVADPRLMGTRGVSAGAGGGITITSGLAR 211
Query: 190 DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
+R R A GQ RHA + +V+E ALVE RLETGRTHQ
Sbjct: 212 HKTDRQRQAVF----FVGQGRHAITHARVLETFGAPECLALVECRLETGRTHQ 260
>gi|347531804|ref|YP_004838567.1| pseudouridine synthase, RluA family protein [Roseburia hominis
A2-183]
gi|345501952|gb|AEN96635.1| pseudouridine synthase, RluA family protein [Roseburia hominis
A2-183]
Length = 307
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 121/218 (55%), Gaps = 34/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K DM+ I + E+IPLDI+YEDD++LVVNKP MVVHP+ G+ TGTL
Sbjct: 56 NYRLKADDMICVEIPDAVQTPILPENIPLDILYEDDDLLVVNKPKGMVVHPSAGHYTGTL 115
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISG--ASIRPGIVHRLDKGTSGLL 143
VN I++HC S+SG IRPGIVHR+D T+G L
Sbjct: 116 VNAIMYHC-------------------------RDSLSGINGEIRPGIVHRIDMDTTGSL 150
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+V K++ SH ++EQ K H++ R Y + GV + G + PI R P R +MA +
Sbjct: 151 IVCKNDESHVFIAEQIKEHSVNRRYRGIVYGVVKEEEGTVNAPIGRHPIERKKMAI---N 207
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K+G+ A + YKV+E +E++LETGRTHQ
Sbjct: 208 EKNGKP--AITHYKVLERFE--RYTYMEFKLETGRTHQ 241
>gi|89891672|ref|ZP_01203175.1| ribosomal large subunit pseudouridine synthase D [Flavobacteria
bacterium BBFL7]
gi|89516007|gb|EAS18671.1| ribosomal large subunit pseudouridine synthase D [Flavobacteria
bacterium BBFL7]
Length = 349
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 112/192 (58%), Gaps = 28/192 (14%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDA 109
EDIPLDIVYEDD ++VVNKPA MVVHP GN +GTL+N ++HH
Sbjct: 95 EDIPLDIVYEDDTLVVVNKPAGMVVHPGHGNYSGTLINALIHH----------------- 137
Query: 110 EDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYI 169
F + + +S RPG+VHR+DK TSGLLVVAK EH+ ++LS QF T ER Y+
Sbjct: 138 --------FDNLPNNSSNRPGLVHRIDKDTSGLLVVAKTEHAMSYLSAQFAAKTSEREYV 189
Query: 170 SLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSAL 229
++ G + SG +E I R P NR++ G + + A + + VIE L G +
Sbjct: 190 AIVWGNFDEQSGTVEGNIGRHPKNRLQNYVWSGEEAF-KGKPAVTHWSVIEGL--GYVTM 246
Query: 230 VEWRLETGRTHQ 241
+ +LETGRTHQ
Sbjct: 247 ISCKLETGRTHQ 258
>gi|329116866|ref|ZP_08245583.1| pseudouridine synthase, RluA family [Streptococcus parauberis NCFD
2020]
gi|326907271|gb|EGE54185.1| pseudouridine synthase, RluA family [Streptococcus parauberis NCFD
2020]
Length = 295
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++VK GD++ I E + L +AEDIPLD+VYED+++ ++NKP MVVHP+ G+++GT+
Sbjct: 46 KYSVKAGDIITYEIQEEEVLDYQAEDIPLDVVYEDEDLAIINKPQGMVVHPSAGHSSGTM 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+ +D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 106 VNALLYQI----------------KDL-------SGINGV-VRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+++ K R Y+++ G G IE PI R +R + A I
Sbjct: 142 AKNDAAHRALADELKAKKSLRKYLAIVHGNLPNDRGIIEAPIGRSEKDRKKQAVI----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R++VIE G LVE LETGRTHQ
Sbjct: 197 -ARGKEAVTRFQVIERF--GDYTLVELTLETGRTHQ 229
>gi|443242482|ref|YP_007375707.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
gi|442799881|gb|AGC75686.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
Length = 346
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 114/193 (59%), Gaps = 28/193 (14%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 108
AEDIPLDIVYEDD+++VVNKPA MVVHP GN +GTL+N ++HH
Sbjct: 91 AEDIPLDIVYEDDHLVVVNKPAGMVVHPGHGNYSGTLINALIHH---------------- 134
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
F + + +S RPG+VHR+DK TSGLLVVAK E + A+LS QF T ER Y
Sbjct: 135 ---------FENLPNNSSNRPGLVHRIDKDTSGLLVVAKTEEAMAYLSAQFAAKTSEREY 185
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
I++ G ++ SG +E I R P NR++ + + + A + Y V E L G +
Sbjct: 186 IAIVWGNFTEKSGTVEGNIGRHPKNRLQNTVWLDDEAY-KGKPAVTHYTVTEDL--GYVS 242
Query: 229 LVEWRLETGRTHQ 241
++ RLETGRTHQ
Sbjct: 243 VISCRLETGRTHQ 255
>gi|116626305|ref|YP_828461.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Solibacter usitatus Ellin6076]
gi|116229467|gb|ABJ88176.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Solibacter usitatus Ellin6076]
Length = 296
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 122/219 (55%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ S+ ++ D V ++ PL A AEDIPL I+YED +V+ ++KPA MVVH G +
Sbjct: 46 VKTSYTLRAADAVEVEPADPPPLNATAEDIPLRILYEDADVVAIDKPAGMVVHAGAGVHS 105
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +LH + + S G +RPGIVHRLD+ TSG+
Sbjct: 106 GTLVNALLHRFA------------------------TLSGVGGPLRPGIVHRLDRFTSGV 141
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L+ QF IE+VY++L G +GRIE PI+RDP +R RM A
Sbjct: 142 LLVAKNDAAHQKLAAQFSGREIEKVYLALVHGTVKPETGRIERPIARDPVHRARMTA--- 198
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + R A S Y+V+ L+E R+ TGRTHQ
Sbjct: 199 --RLAEGRAAWSEYRVLRRFP--DFTLLEVRIGTGRTHQ 233
>gi|335996600|ref|ZP_08562517.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis SPM0211]
gi|335351670|gb|EGM53161.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis SPM0211]
Length = 301
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ E + L E+IPLDIVYEDD+V+V+NKP MVVHPAPG+ TL
Sbjct: 48 KYKVKSGDVIRLEEPETKTLELRPENIPLDIVYEDDDVIVINKPQGMVVHPAPGHDEHTL 107
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC L S+I+G + RPGIVHR+DK TSGLL+V
Sbjct: 108 VNALLYHCPL------------------------STING-TFRPGIVHRIDKDTSGLLMV 142
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L++Q K T R Y++L G ++ G I PI R +R + A +
Sbjct: 143 AKNDKAHRSLAKQLKDKTNIREYVALVHGRIAEDEGTINAPIGRSLKDRKKQAVVK---- 198
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V++ LV+ LETGRTHQ
Sbjct: 199 --DGRNAVTHFEVLKRYR--DYTLVKCILETGRTHQ 230
>gi|402775791|ref|YP_006629735.1| Pseudouridylate synthase [Bacillus subtilis QB928]
gi|402483460|gb|AFQ59969.1| Pseudouridylate synthase [Bacillus subtilis QB928]
Length = 303
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 122/219 (55%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 145 LMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVTR- 203
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + + V+E LVE +LETGRTHQ
Sbjct: 204 -----DGKNAVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|383787005|ref|YP_005471574.1| RluA family pseudouridine synthase [Fervidobacterium pennivorans
DSM 9078]
gi|383109852|gb|AFG35455.1| pseudouridine synthase, RluA family [Fervidobacterium pennivorans
DSM 9078]
Length = 344
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 123/218 (56%), Gaps = 32/218 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S+ VK GD++ + + +P E E+IPLDI+YED ++LV+NK ++ HP P + +G
Sbjct: 82 SYKVKSGDIITLMVPQ-KPQVPEILPENIPLDIIYEDRDILVINKQPGIITHPIPSHTSG 140
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
T+VN +L+HC D + + G +RPGIVHRLDK TSG++
Sbjct: 141 TIVNAVLYHCK-------------DLQGV-----------GGVLRPGIVHRLDKDTSGVM 176
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
V+AK++ +H L++QFK E++Y+ L GVP ++ G I V I+R+P R++M
Sbjct: 177 VIAKNDLAHQSLTKQFKDRVTEKLYVCLVKGVPEKNEGDINVSIARNPVLRVKMTV---- 232
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + YKVI S + W +TGRTHQ
Sbjct: 233 TQSAYGKPALTHYKVIRKFGNLASLVFAWP-KTGRTHQ 269
>gi|339443316|ref|YP_004709321.1| hypothetical protein CXIVA_22520 [Clostridium sp. SY8519]
gi|338902717|dbj|BAK48219.1| hypothetical protein CXIVA_22520 [Clostridium sp. SY8519]
Length = 309
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 120/210 (57%), Gaps = 30/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G V I E +P EDIPL I+YED+++LV++KP MVVHP+ G+A GTLVN +L+
Sbjct: 60 GAQVTVCIPEARPAEILPEDIPLSILYEDEDLLVIDKPKGMVVHPSAGHAGGTLVNAVLY 119
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC L+ N E IRPGIVHR+DK T+G L+V K++ +
Sbjct: 120 HCR-GQLSGINGE----------------------IRPGIVHRIDKDTTGALIVCKNDSA 156
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H ++EQ K H++ R Y+ + G S ++G +E PI R P +R +MA P + K
Sbjct: 157 HRKIAEQIKAHSVTRRYVGIVYGNFSDTTGTVEGPIGRHPVHRQKMAVNPKNGK-----P 211
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y V+E G + +++ LETGRTHQ
Sbjct: 212 AVTHYTVLEQFR--GYSYLQFELETGRTHQ 239
>gi|357238999|ref|ZP_09126335.1| pseudouridine synthase, RluA family [Streptococcus ictaluri 707-05]
gi|356752721|gb|EHI69846.1| pseudouridine synthase, RluA family [Streptococcus ictaluri 707-05]
Length = 299
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 122/218 (55%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
+ V+ GD + I + + L +AEDIPLDI+YEDD + +VNKP MVVHP+ G+A+G
Sbjct: 44 KAKYTVQLGDKITYQIPQEEVLEYKAEDIPLDIIYEDDALAIVNKPQGMVVHPSAGHASG 103
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
T+VN +++H + SSI+G +RPGIVHR+DK TSGLL
Sbjct: 104 TMVNALMYHI-----------------------KNLSSINGV-VRPGIVHRIDKDTSGLL 139
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+VAK + +H HL+E+ K R Y+++ G G IE PI R +R + A
Sbjct: 140 MVAKTDKAHHHLAEELKAKKSLRKYLAIVHGNLPNDRGVIEAPIGRSEKDRKKQAVTV-- 197
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R+ V+E G L+E +LETGRTHQ
Sbjct: 198 ----KGKEALTRFTVLERF--GDYTLLELQLETGRTHQ 229
>gi|19704707|ref|NP_604269.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296327673|ref|ZP_06870215.1| RluA family pseudouridine synthase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|19715021|gb|AAL95568.1| Ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296155204|gb|EFG95979.1| RluA family pseudouridine synthase [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 319
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 125/215 (58%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + I E + + E E+IPL+IVYE+D+ +++NK MVVHPA GN TGTLVN
Sbjct: 65 LKLGEKIEVLIPEEENIDIEPENIPLNIVYENDDFILINKSYGMVVHPAYGNYTGTLVNA 124
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + L+S N +IRPGI+HRLDK TSGL++VAK+
Sbjct: 125 LLYYTN--NLSSVN----------------------GNIRPGIIHRLDKDTSGLILVAKN 160
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
++HA L+ F TI + Y+ + G S+ SGRIE I RD +R +M + + K
Sbjct: 161 NYAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDSKDRKKMTIVKENGK- 219
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S YKV+E + G +LVE +ETGRTHQ
Sbjct: 220 ----IAISNYKVVEQVE--GYSLVEVAIETGRTHQ 248
>gi|262038336|ref|ZP_06011717.1| ribosomal large subunit pseudouridine synthase D [Leptotrichia
goodfellowii F0264]
gi|261747640|gb|EEY35098.1| ribosomal large subunit pseudouridine synthase D [Leptotrichia
goodfellowii F0264]
Length = 346
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 128/216 (59%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ V+ D + I E + + AE+I ++I+YED ++ V+NK A MVVHPA GN + TL
Sbjct: 87 SYKVEENDRIEIIIPEAEKVEIIAENIDINIIYEDKDIAVINKKAGMVVHPAHGNYSRTL 146
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN IL+H +D+S I+G IRPGIVHRLDK TSGL+VV
Sbjct: 147 VNAILYHI----------------KDLS-------GING-EIRPGIVHRLDKDTSGLIVV 182
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+E F+ +++ Y+++ G ++ SGR+E I RD ++R +M+ + ++K
Sbjct: 183 AKNDKAHIKLAEMFQKKEVKKTYLAILKGKLNRESGRLETQIGRDADDRKKMSVLKENDK 242
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + Y V IL+ LV+ +ETGRTHQ
Sbjct: 243 ---GKKAITNYNV--ILSNELFTLVKVYIETGRTHQ 273
>gi|374709384|ref|ZP_09713818.1| pseudouridine synthase [Sporolactobacillus inulinus CASD]
Length = 307
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 125/220 (56%), Gaps = 31/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
++ S+ ++ D V + E +PL E IPLDIV+ED +V+VVNKP MVVHPAPG+
Sbjct: 48 QVKTSYKLRFNDQVLIHLPEPEPLNVSPEQIPLDIVFEDGSVIVVNKPRGMVVHPAPGHM 107
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
+GTLVN +L HC D+ S I+G +RPGIVHR+D+ TSG
Sbjct: 108 SGTLVNALLGHC----------------RDL-------SGINGI-LRPGIVHRIDRETSG 143
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL+VAK + +H L++Q K + +R Y+++ G G I+ PI R +R +MA
Sbjct: 144 LLMVAKTDQAHRSLAKQLKDKSTKRKYLAIVHGNLPHDEGIIDAPIGRSEKDRKKMAVTE 203
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++K HA + +KV+E + V RLETGRTHQ
Sbjct: 204 KNSK-----HAVTHFKVLERFS--NYTFVACRLETGRTHQ 236
>gi|321315311|ref|YP_004207598.1| pseudouridylate synthase [Bacillus subtilis BSn5]
gi|320021585|gb|ADV96571.1| pseudouridylate synthase [Bacillus subtilis BSn5]
Length = 303
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 122/219 (55%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKIQPGDQVTVTVPEPEALDVLAEPLDLDIYYEDQDVLVVNKPRGMVVHPAPGHLT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 145 LMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVT-- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + + V+E LVE +LETGRTHQ
Sbjct: 203 ----RDGKNAVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|384175288|ref|YP_005556673.1| ribosomal large subunit pseudouridine synthase D [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349594512|gb|AEP90699.1| ribosomal large subunit pseudouridine synthase D [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 303
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 122/219 (55%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 145 LMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVT-- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + + V+E LVE +LETGRTHQ
Sbjct: 203 ----RDGKNAVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|386758269|ref|YP_006231485.1| pseudouridylate synthase [Bacillus sp. JS]
gi|384931551|gb|AFI28229.1| pseudouridylate synthase [Bacillus sp. JS]
Length = 303
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 122/219 (55%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 145 LMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVT-- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + + V+E LVE +LETGRTHQ
Sbjct: 203 ----RDGKNAVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|221309420|ref|ZP_03591267.1| hypothetical protein Bsubs1_08546 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313745|ref|ZP_03595550.1| hypothetical protein BsubsN3_08482 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318669|ref|ZP_03599963.1| hypothetical protein BsubsJ_08416 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322942|ref|ZP_03604236.1| hypothetical protein BsubsS_08522 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|255767360|ref|NP_389429.3| pseudouridylate synthase [Bacillus subtilis subsp. subtilis str.
168]
gi|430755971|ref|YP_007209751.1| Signal peptidase II lsp [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|452914367|ref|ZP_21962994.1| pseudouridine synthase, RluA family protein [Bacillus subtilis
MB73/2]
gi|254763395|sp|Q45480.3|YLYB_BACSU RecName: Full=Uncharacterized RNA pseudouridine synthase YlyB;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|1373157|gb|AAB57767.1| orf-X; hypothetical protein; Method: conceptual translation
supplied by author [Bacillus subtilis subsp. subtilis
str. 168]
gi|225184987|emb|CAB13420.3| pseudouridylate synthase [Bacillus subtilis subsp. subtilis str.
168]
gi|407958953|dbj|BAM52193.1| pseudouridylate synthase [Synechocystis sp. PCC 6803]
gi|407964530|dbj|BAM57769.1| pseudouridylate synthase [Bacillus subtilis BEST7003]
gi|430020491|gb|AGA21097.1| Signal peptidase II lsp [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|452116787|gb|EME07182.1| pseudouridine synthase, RluA family protein [Bacillus subtilis
MB73/2]
Length = 303
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 122/219 (55%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 145 LMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVT-- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + + V+E LVE +LETGRTHQ
Sbjct: 203 ----RDGKNAVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|294781868|ref|ZP_06747200.1| ribosomal large subunit pseudouridine synthase, RluA family
[Fusobacterium sp. 1_1_41FAA]
gi|294481679|gb|EFG29448.1| ribosomal large subunit pseudouridine synthase, RluA family
[Fusobacterium sp. 1_1_41FAA]
Length = 318
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + +I E + + EAE+IPLDIV+E+D+ ++VNK +MVVHPA GN GTLVN
Sbjct: 60 LKSGEKIEISIPEEENIDIEAENIPLDIVFENDDFILVNKKYNMVVHPAYGNYNGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + L+S N +IRPGI+HRLDK TSGL++VAK+
Sbjct: 120 LLYYTN--NLSSVN----------------------GNIRPGIIHRLDKDTSGLILVAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSS--GRIEVPISRDPNNRIRMAAIPGSNKH 206
+HA L+ F TI + Y+ + G S + GRIE I RD +R +MA + + K
Sbjct: 156 NFAHAKLASMFTDKTIHKTYLCIVKGNFSDENLEGRIENLIGRDTKDRKKMAVVKENGK- 214
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S Y+V+E + +LVE +ETGRTHQ
Sbjct: 215 ----LAISNYRVVEQVK--DYSLVEVLIETGRTHQ 243
>gi|365888371|ref|ZP_09427141.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. STM 3809]
gi|365335954|emb|CCD99672.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Bradyrhizobium sp. STM 3809]
Length = 331
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 127/224 (56%), Gaps = 37/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+++V GD + + E P AE IPLDIVYEDD+++V++KP+ +VVHPA G+ +GTL
Sbjct: 55 AYHVAAGDTITIDVPEAAPPAPAAEAIPLDIVYEDDDIIVIDKPSGLVVHPAAGHESGTL 114
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC S S G RPGIVHRLDK T+GL+VV
Sbjct: 115 VNALIAHCG-----------------------ASLSGIGGVRRPGIVHRLDKDTTGLMVV 151
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++H+HA LS QF H +ER Y++ G+P + G + PI R P+ R +MA P
Sbjct: 152 AKNDHAHASLSAQFADHGRTGAMERGYLAFAWGLPHRPHGTVNAPIDRHPHARDKMAVRP 211
Query: 202 GSNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
+ R A + Y+V+E +G ++L+ LETGRTHQ
Sbjct: 212 ------RGREAITHYEVMESFSGRDGKPVASLIACHLETGRTHQ 249
>gi|268319474|ref|YP_003293130.1| pseudouridine synthase, RluA family [Lactobacillus johnsonii
FI9785]
gi|262397849|emb|CAX66863.1| pseudouridine synthase, RluA family [Lactobacillus johnsonii
FI9785]
Length = 304
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 125/218 (57%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ V+ GD+++ TI ++PL EAE++ LDIVYED +V+VVNKP MVVHP+ G+
Sbjct: 49 KVSYKVQSGDVIDVTIPPVKPLSLEAENLHLDIVYEDSDVIVVNKPQGMVVHPSAGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVNG+L+H D++D E RPGIVHR+DK TSGLL
Sbjct: 109 TLVNGLLYHT----------------RDLADSPE--------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK++ + L +Q +R Y+++ G +G I PI R+PN+R +MA P
Sbjct: 145 MIAKNDRARESLEKQLAKKINKREYLAIVHGNFEVKNGVINAPIGRNPNSRKQMAVNP-- 202
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + + V+E +LV+ LETGRTHQ
Sbjct: 203 ----KGKAAVTHFTVLEQFK--NYSLVKCVLETGRTHQ 234
>gi|227890010|ref|ZP_04007815.1| pseudouridylate synthase [Lactobacillus johnsonii ATCC 33200]
gi|227849454|gb|EEJ59540.1| pseudouridylate synthase [Lactobacillus johnsonii ATCC 33200]
Length = 304
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 125/218 (57%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ V+ GD+++ TI ++PL EAE++ LDIVYED +V+VVNKP +VVHP+ G+
Sbjct: 49 KVSYKVQSGDVIDVTIPPVKPLSLEAENLHLDIVYEDSDVIVVNKPQGIVVHPSAGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVNG+L+H D++D E RPGIVHR+DK TSGLL
Sbjct: 109 TLVNGLLYHT----------------RDLADSPE--------GFRPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK++ + L +Q +R Y+++ G +G I PI R+PNNR +MA P
Sbjct: 145 MIAKNDRARESLEKQLAEKINKREYLAIVHGNFEVKNGVINAPIGRNPNNRKQMAVNP-- 202
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + + V+E +LV+ LETGRTHQ
Sbjct: 203 ----KGKAAVTHFTVLEQFK--NYSLVKCVLETGRTHQ 234
>gi|408489613|ref|YP_006865982.1| ribosomal large subunit pseudouridine synthase RluD-like protein
[Psychroflexus torquis ATCC 700755]
gi|408466888|gb|AFU67232.1| ribosomal large subunit pseudouridine synthase RluD-like protein
[Psychroflexus torquis ATCC 700755]
Length = 345
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 123/218 (56%), Gaps = 31/218 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLR--AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK GD V ++ P EDIPLDIVYEDD +LVVNK A MVVHP GN +G
Sbjct: 65 NYKVKAGDEVKVLLA-YPPYENLLTPEDIPLDIVYEDDALLVVNKAAGMVVHPGHGNYSG 123
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TL+N +++H F + + +S RPG+VHR+DK TSGLL
Sbjct: 124 TLINALVYH-------------------------FENLPNNSSDRPGLVHRIDKDTSGLL 158
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK E + A+LS QF T +R Y+++ G ++ G IE I R+P NR++ G
Sbjct: 159 VVAKTEAAMAYLSRQFFHKTSKREYVAIAWGNLNEEEGTIEGNIGRNPKNRLQNIVYLGD 218
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ Q + A + YKVIE L G L+ +LETGRTHQ
Sbjct: 219 DA-DQGKPAVTHYKVIERL--GYVTLISCQLETGRTHQ 253
>gi|296331122|ref|ZP_06873596.1| pseudouridylate synthase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674277|ref|YP_003865949.1| pseudouridylate synthase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296151766|gb|EFG92641.1| pseudouridylate synthase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412521|gb|ADM37640.1| pseudouridylate synthase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 303
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 121/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTL
Sbjct: 52 NYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++ HC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 112 VNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 148 AKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVT----- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + + V+E LVE +LETGRTHQ
Sbjct: 203 -RDGKNAVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|229545666|ref|ZP_04434391.1| pseudouridylate synthase [Enterococcus faecalis TX1322]
gi|307275817|ref|ZP_07556956.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2134]
gi|307291840|ref|ZP_07571711.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0411]
gi|422685833|ref|ZP_16744046.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4000]
gi|422720764|ref|ZP_16777373.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0017]
gi|422734158|ref|ZP_16790452.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1341]
gi|422739157|ref|ZP_16794340.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2141]
gi|229309234|gb|EEN75221.1| pseudouridylate synthase [Enterococcus faecalis TX1322]
gi|306497106|gb|EFM66652.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0411]
gi|306507509|gb|EFM76640.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2134]
gi|315029545|gb|EFT41477.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4000]
gi|315032018|gb|EFT43950.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0017]
gi|315144961|gb|EFT88977.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2141]
gi|315168880|gb|EFU12897.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1341]
Length = 310
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 54 ETVRANYKVTAGDEIVVTIPEPEALDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGH 113
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 114 PKGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 149
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 150 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 209
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 210 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 242
>gi|167745608|ref|ZP_02417735.1| hypothetical protein ANACAC_00300 [Anaerostipes caccae DSM 14662]
gi|167654920|gb|EDR99049.1| pseudouridine synthase, RluA family [Anaerostipes caccae DSM 14662]
Length = 305
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ G+ V + + L + E + LDIVYED +++++NKP +MVVHPAPG+ GTL
Sbjct: 53 NYKVREGERVILKVPKPTELSIKPEKMDLDIVYEDRDIILINKPKNMVVHPAPGHYEGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++ HC DE S I+G +RPGIVHR+DK T+G+L+V
Sbjct: 113 VNGLMEHCR--------------------DE--LSGINGV-LRPGIVHRIDKDTTGILIV 149
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
K++ +H L+EQ K HTI R Y ++ + SG ++ PI+R +R +MA
Sbjct: 150 CKNDMAHQCLAEQLKDHTITRRYHAIVCHNIKEESGTVDAPIARSRKDRKKMAI-----D 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y+V+E L G + +E RLETGRTHQ
Sbjct: 205 REAGRRAVTHYRVLERLKEGFT-YIECRLETGRTHQ 239
>gi|422708626|ref|ZP_16766154.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0027]
gi|315037134|gb|EFT49066.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0027]
Length = 310
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 54 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQDMVVHPSAGH 113
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 114 PKGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 149
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 150 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 209
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 210 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 242
>gi|427711949|ref|YP_007060573.1| ribosomal large subunit pseudouridine synthase D [Synechococcus sp.
PCC 6312]
gi|427376078|gb|AFY60030.1| ribosomal large subunit pseudouridine synthase D [Synechococcus sp.
PCC 6312]
Length = 317
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 126/237 (53%), Gaps = 36/237 (15%)
Query: 6 LEFNQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 65
+E QV V + + KL + K GD++ + + Q E IPLD++YEDD +++
Sbjct: 45 IEQGQVQVNGVTTYLKKLPI----KVGDVIEAELPKPQACELVPEAIPLDVLYEDDQIIL 100
Query: 66 VNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISG 124
+NKP +VVHPAPG+ +GTLV+ +L HC LP + G
Sbjct: 101 INKPVGLVVHPAPGHDSGTLVHALLAHCPDLPGI-------------------------G 135
Query: 125 ASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE 184
+RPGIVHRLDK TSG+++VAK E + HL Q K T R Y+ L GVP G I
Sbjct: 136 GQLRPGIVHRLDKDTSGVMMVAKTESALQHLQAQIKARTARREYLGLVQGVPPTPIGTIN 195
Query: 185 VPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
PI R P +R +MA + + R A + + V E L G LV ++L+TGRTHQ
Sbjct: 196 APIGRHPTHRKKMAV----TELERGRAAITHWSVQERL--GHYTLVLFQLDTGRTHQ 246
>gi|255261883|ref|ZP_05341225.1| ribosomal large subunit pseudouridine synthase D [Thalassiobium sp.
R2A62]
gi|255104218|gb|EET46892.1| ribosomal large subunit pseudouridine synthase D [Thalassiobium sp.
R2A62]
Length = 341
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 120/226 (53%), Gaps = 45/226 (19%)
Query: 33 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 92
D + T+ + EDIPLD+V+EDD+++V+NKP+ MVVHPAPG+ +GTLVN ++HH
Sbjct: 64 DEITVTLPDAAESHMGPEDIPLDLVFEDDDLIVINKPSGMVVHPAPGSPSGTLVNALMHH 123
Query: 93 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSH 152
C S S G RPGIVHR+DK TSGLLVVAK + +H
Sbjct: 124 CG-----------------------DSLSGVGGEKRPGIVHRIDKETSGLLVVAKSDKAH 160
Query: 153 AHLSEQFKLHTIERVYISLTSGVPSQSSGR----------------IEVPISRDPNNRIR 196
L+ QF+ HT+ER Y ++ GVP + R I ++R +R R
Sbjct: 161 HGLAAQFEAHTVERYYRAVVYGVPDSNDPRLRGIRGVNFERSNIMKITTQLARHKTDRQR 220
Query: 197 MAAIPGSNKHGQARHAASRYKVIEILAGGGSA-LVEWRLETGRTHQ 241
A + G RHA +R +V+E A LVE LETGRTHQ
Sbjct: 221 QAVL-----FGNGRHAVTRARVVERFGQPVVASLVECWLETGRTHQ 261
>gi|227514877|ref|ZP_03944926.1| pseudouridylate synthase [Lactobacillus fermentum ATCC 14931]
gi|227086724|gb|EEI22036.1| pseudouridylate synthase [Lactobacillus fermentum ATCC 14931]
Length = 291
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 123/219 (56%), Gaps = 33/219 (15%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ + ++ GD V + E E+IPLDIVYEDD+VLVVNKP MVVHPAPG+
Sbjct: 37 VKAKYQLQAGDRVVIKPETPVEIDLEPENIPLDIVYEDDDVLVVNKPQGMVVHPAPGHPN 96
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TLVN ++++ L SSI+G +RPGIVHR+DK TSGL
Sbjct: 97 HTLVNALMYYAPL------------------------SSING-ELRPGIVHRIDKDTSGL 131
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK + +H L+ Q K + R Y++L GV ++ G I+ P++R P +R + A + G
Sbjct: 132 LMVAKTDRAHRSLTAQLKEKSNLREYVALVHGVIKENEGTIDAPLARSPKDRKKQAVVVG 191
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA + ++V++ LV RLETGRTHQ
Sbjct: 192 ------GRHAVTHFRVLKRYQ--HYTLVACRLETGRTHQ 222
>gi|421593555|ref|ZP_16038104.1| pseudouridine synthase [Rhizobium sp. Pop5]
gi|403700490|gb|EJZ17642.1| pseudouridine synthase [Rhizobium sp. Pop5]
Length = 341
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 138/251 (54%), Gaps = 41/251 (16%)
Query: 7 EFNQVSVLALF----LSMDKLSVS---HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE 59
EF++ + AL +SM V+ V+ GD T+ E + + E+IPLDI++E
Sbjct: 36 EFSRSRIKALIKDGQVSMRGEPVTDPQRKVRAGDSFEITLPEPEDPTPQGENIPLDILHE 95
Query: 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFS 119
D++++V++KPA +VVHP PGN TGTLVN ++HHC +
Sbjct: 96 DEDLIVISKPAGLVVHPGPGNWTGTLVNALIHHCG----------------------DTL 133
Query: 120 SSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----TIERVYISLTSGV 175
S I G RPGIVHRLDK T+G++VVAK++ +H HLS QF H +ER Y ++ G
Sbjct: 134 SGIGGVR-RPGIVHRLDKDTTGVMVVAKNDIAHRHLSLQFADHGRTMPLERAYQAVVWGR 192
Query: 176 PSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL-----AGGGSALV 230
P +G ++ P+ R +R R A+ + H A A + Y+VIE A ++LV
Sbjct: 193 PRTLTGTVDAPLGRSTGDRTRR-AVKRPDSH-DADEAITHYEVIERFQEKPDATALASLV 250
Query: 231 EWRLETGRTHQ 241
E LETGRTHQ
Sbjct: 251 ECHLETGRTHQ 261
>gi|443632785|ref|ZP_21116964.1| pseudouridylate synthase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443347608|gb|ELS61666.1| pseudouridylate synthase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 303
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 121/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTL
Sbjct: 52 NYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++ HC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 112 VNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 148 AKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVT----- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + + V+E LVE +LETGRTHQ
Sbjct: 203 -RDGKNAVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|423561702|ref|ZP_17537978.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A1]
gi|401201959|gb|EJR08824.1| RluA family pseudouridine synthase [Bacillus cereus MSX-A1]
Length = 302
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 126/219 (57%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ V++ VK D + TI + + + ED+ L+I YED +VLVVNKP MVVHPAPG+ +
Sbjct: 50 VKVNYKVKEEDEITVTIPDPEASDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTS 109
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++HHC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 110 GTLVNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 145
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ GV G I+ PI RD R M
Sbjct: 146 LMVAKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV--- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++G ++A + ++V+E LVE RLETGRTHQ
Sbjct: 203 -DENG--KNAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|410031141|ref|ZP_11280971.1| RluA family pseudouridine synthase [Marinilabilia sp. AK2]
Length = 383
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 115/193 (59%), Gaps = 30/193 (15%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEAFSD 108
E IPLDIVYEDD++LVVNKPA MVVHPA GN +GTLVNG++++ + LPTL
Sbjct: 131 EPIPLDIVYEDDHLLVVNKPAGMVVHPAHGNWSGTLVNGLVYYFNQLPTL---------- 180
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
G + RPG+VHR+DK TSGLLV+AK E + L+ QF H I+R Y
Sbjct: 181 --------------PGNTGRPGLVHRIDKDTSGLLVIAKSELAMTELANQFFHHHIDRTY 226
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
++L G P + G I + R +R M A P + Q +HA + +K+++ L +
Sbjct: 227 LALVWGEPKEEEGTIVAHVGRSAKDRKVMDAYPDGS---QGKHAVTHWKILKKLR--YVS 281
Query: 229 LVEWRLETGRTHQ 241
LV+ LETGRTHQ
Sbjct: 282 LVQCNLETGRTHQ 294
>gi|430004492|emb|CCF20287.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Rhizobium sp.]
Length = 328
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 117/219 (53%), Gaps = 34/219 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V + E + EDIPLD++YED +V+V+ KP +VVHP GN TGTLVN ++H
Sbjct: 55 GDAVEIVLPEPEDAEPRGEDIPLDVLYEDADVIVILKPPGLVVHPGAGNWTGTLVNALIH 114
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC E S I G RPGIVHRLDK TSG+LV AK++ +
Sbjct: 115 HCG----------------------ESLSGIGGVR-RPGIVHRLDKDTSGVLVAAKNDIA 151
Query: 152 HAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG 207
H HL+ QF H +ER Y ++ G P Q G I+ P+ R +R + A
Sbjct: 152 HRHLAAQFADHGRTGPLERAYQAVVWGRPKQLKGTIDAPLGRGGGDRTKRAV--KREDSD 209
Query: 208 QARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
AR A + Y+V+E A ++LVE RLETGRTHQ
Sbjct: 210 DAREAITHYEVVERFHEKPDATALASLVECRLETGRTHQ 248
>gi|256619215|ref|ZP_05476061.1| pseudouridylate synthase [Enterococcus faecalis ATCC 4200]
gi|256853277|ref|ZP_05558647.1| pseudouridylate synthase [Enterococcus faecalis T8]
gi|300860210|ref|ZP_07106297.1| pseudouridine synthase, RluA family [Enterococcus faecalis TUSoD
Ef11]
gi|428767158|ref|YP_007153269.1| pseudouridylate synthase, 23S rRNA-specific [Enterococcus faecalis
str. Symbioflor 1]
gi|256598742|gb|EEU17918.1| pseudouridylate synthase [Enterococcus faecalis ATCC 4200]
gi|256711736|gb|EEU26774.1| pseudouridylate synthase [Enterococcus faecalis T8]
gi|300849249|gb|EFK76999.1| pseudouridine synthase, RluA family [Enterococcus faecalis TUSoD
Ef11]
gi|427185331|emb|CCO72555.1| pseudouridylate synthase, 23S rRNA-specific [Enterococcus faecalis
str. Symbioflor 1]
Length = 301
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 45 ETVRANYKVTAGDEIVVTIPEPEALDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGH 104
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 105 PKGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 140
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 141 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 200
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 201 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 233
>gi|213961970|ref|ZP_03390235.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
sputigena Capno]
gi|213955323|gb|EEB66640.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
sputigena Capno]
Length = 350
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 127/229 (55%), Gaps = 35/229 (15%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAE---AEDIPLDIVYEDDNVLVVNKPAHM 72
+F++ + + +H VK D+V +S P + E+IPL+IVYEDD +LVVNKPA M
Sbjct: 64 IFVNGEPVKANHRVKANDVVKVLLS--HPPHEDLLVPENIPLNIVYEDDALLVVNKPAGM 121
Query: 73 VVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 132
VVHP GN +GTL+N +++H F + +S RPG+V
Sbjct: 122 VVHPGHGNYSGTLINALVYH-------------------------FEHLPNNSSNRPGLV 156
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
HR+DK TSGLLV+AK E + HL++QF T +R YI+L G + G + I R
Sbjct: 157 HRIDKDTSGLLVIAKTEEAMLHLTQQFFYKTTQREYIALVWGNIEEDEGTVRGHIGRHLK 216
Query: 193 NRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R++M P + HG + A + YKV+E G LV RLETGRTHQ
Sbjct: 217 DRLQMDVFPDGS-HG--KEAVTHYKVLERF--GYVTLVSCRLETGRTHQ 260
>gi|257126163|ref|YP_003164277.1| pseudouridine synthase [Leptotrichia buccalis C-1013-b]
gi|257050102|gb|ACV39286.1| pseudouridine synthase, RluA family [Leptotrichia buccalis
C-1013-b]
Length = 326
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 29/226 (12%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K ++ ++ D + I EL+ + + E+I ++I+YED+++ V+NK A +VVH
Sbjct: 61 ILVNEKKTKPAYKIEENDTIKVVIPELETVEIKPENIDIEIIYEDNDLAVINKKAGIVVH 120
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ +GTLVN IL+H I D S I+G IRPGIVHRL
Sbjct: 121 PANGHYSGTLVNAILYH-------------------IKD----LSGING-EIRPGIVHRL 156
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL++AK++ +H LS+ F T++++Y+++ G +Q SGRI I RD N+R
Sbjct: 157 DKDTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAILKGKLNQKSGRIVTQIGRDKNDRK 216
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+M I N + A + Y+VI LV+ +ETGRTHQ
Sbjct: 217 KMTVINDLN---SGKTAITNYEVIS--QTEKFTLVKVHIETGRTHQ 257
>gi|409386178|ref|ZP_11238635.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
raffinolactis 4877]
gi|399206541|emb|CCK19550.1| Ribosomal large subunit pseudouridine synthase D [Lactococcus
raffinolactis 4877]
Length = 299
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ V D+V+ I E + L EAE+I L+IVYEDD+V V+NKP MVVHP+ G+ TGTL
Sbjct: 48 KYKVLENDIVSFDIPEPEVLSYEAENIALEIVYEDDDVAVINKPQGMVVHPSAGHQTGTL 107
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H + SSI+G IRPGIVHR+DK TSGLL+V
Sbjct: 108 VNALMYHMT-----------------------NLSSINGV-IRPGIVHRIDKDTSGLLMV 143
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ Q K HT +R Y+++ G G IE PI R+ +R + A I G
Sbjct: 144 AKNDQAHEFLATQLKEHTSKRRYVAIIHGNLLNDRGVIEAPIGRNAKDRKKQAVIAG--- 200
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++V+E G LV LETGRTHQ
Sbjct: 201 ---GKPALTHFEVLERF--GDFTLVSLTLETGRTHQ 231
>gi|84500882|ref|ZP_00999117.1| putative Pseudouridine synthase, Rlu [Oceanicola batsensis
HTCC2597]
gi|84390949|gb|EAQ03367.1| putative Pseudouridine synthase, Rlu [Oceanicola batsensis
HTCC2597]
Length = 339
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 123/225 (54%), Gaps = 36/225 (16%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD++ T+ + + IPLD+VYED ++VV+KP MVVHPAPG GTLVN
Sbjct: 61 RVAEGDVIEITLGAAAEVETRPQAIPLDVVYEDAALIVVDKPVGMVVHPAPGTPEGTLVN 120
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC S S G RPGIVHR+DK TSGLLV AK
Sbjct: 121 ALLHHCG-----------------------DSLSGIGGERRPGIVHRIDKDTSGLLVAAK 157
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPG 202
+ +H L+ QF+ H+ ER Y+++ GVP + R+ S +P +++ A
Sbjct: 158 TDRAHHALAAQFERHSAERAYLAICHGVPDAADPRLRGVRGASFEPGGVLKLTTQLARHR 217
Query: 203 SNKHGQA------RHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+++ QA RHA +R +V+E GG+AL+E RLETGRTHQ
Sbjct: 218 TDRQRQAVCFEGGRHAVTRARVLEGF--GGAALLECRLETGRTHQ 260
>gi|357419773|ref|YP_004932765.1| pseudouridine synthase [Thermovirga lienii DSM 17291]
gi|355397239|gb|AER66668.1| pseudouridine synthase, RluA family [Thermovirga lienii DSM 17291]
Length = 329
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 121/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S ++ G + I + + E +P D++YED++++++NKPA + VHP+PG+ GTL
Sbjct: 71 STRLQSGMEIVVKIPVAEAITLTPEYVPFDVLYEDEDIIIINKPAGVAVHPSPGHWKGTL 130
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
V G+LH P L S S+RPGIVHRLD GTSGL+V+
Sbjct: 131 VQGLLHR--YPELFSGEN----------------------SLRPGIVHRLDLGTSGLMVI 166
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK +H +S FK ++++ Y++L G P + SG I++PI RD NR+RMA P
Sbjct: 167 AKHIKAHERMSMLFKTRSVKKEYLALVWGCPRKVSGLIDMPIGRDSRNRLRMAITP---- 222
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +RY+V + G +LV R+ TGRTHQ
Sbjct: 223 --KGKRAITRYEV--LWTRNGFSLVRCRIYTGRTHQ 254
>gi|209965021|ref|YP_002297936.1| ribosomal large subunit pseudouridine synthase D [Rhodospirillum
centenum SW]
gi|209958487|gb|ACI99123.1| ribosomal large subunit pseudouridine synthase D, putative
[Rhodospirillum centenum SW]
Length = 364
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 119/216 (55%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S VK G +V + +P + IPL IV+ED+++LV++K A MVVHPA GN GTL
Sbjct: 97 SRRVKPGQIVEVLVPAAEPAVPLPQAIPLAIVHEDEDLLVIDKAAEMVVHPAAGNPDGTL 156
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + S I G RPGIVHRLDKGTSGLLV
Sbjct: 157 VNALLAHCG----------------------DRLSGIGGVR-RPGIVHRLDKGTSGLLVA 193
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L+ QF ++ R Y+++ GVP+ G IE I R P +R RMA + K
Sbjct: 194 AKTDRAHQGLTAQFADRSLSRTYLAVVWGVPAAREGVIEGNIGRHPGDRKRMAVLSRGGK 253
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A +RY+V+ G ++LVE +L TGRTHQ
Sbjct: 254 -----PAVTRYRVVRSF-GLLASLVECKLLTGRTHQ 283
>gi|254441292|ref|ZP_05054785.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
gi|198251370|gb|EDY75685.1| pseudouridine synthase, RluA family [Octadecabacter antarcticus
307]
Length = 344
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 121/222 (54%), Gaps = 35/222 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V + EDIPLD+V+EDD+++V+NKP MVVHPAPG GTLVN +LH
Sbjct: 63 GDAVEILVEIADDYHVLPEDIPLDVVFEDDDLIVINKPTGMVVHPAPGTPGGTLVNALLH 122
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC +A S G RPGIVHR+DK TSGLLVVAK + +
Sbjct: 123 HCG---------DALSGV--------------GGEKRPGIVHRIDKETSGLLVVAKTDRA 159
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMAAIPGSNKHGQ- 208
H L+ QF+ HT+ER Y ++ GVP + R+ S DP N +++ +KH +
Sbjct: 160 HHGLAAQFEAHTVERHYRAICYGVPDSNDPRVRGIKGASFDPGNILKLQTQLARHKHDRQ 219
Query: 209 --------ARHAASRYKVIEILAGGG-SALVEWRLETGRTHQ 241
RHA +R ++++ L +A+++ LETGRTHQ
Sbjct: 220 KQAVVWHNGRHAVTRARIVQPLGNPAVAAVMDCWLETGRTHQ 261
>gi|390630849|ref|ZP_10258823.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
gi|390483904|emb|CCF31171.1| Pseudouridine synthase [Weissella confusa LBAE C39-2]
Length = 305
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++VK GD + T+ E + + EDIPLDIVYEDD++LVVNKP MVVHPA G+ +GTL
Sbjct: 50 KYSVKPGDEITFTVPEPVEIDLKPEDIPLDIVYEDDDLLVVNKPQGMVVHPALGHESGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ H L S+I+G +RPGIVHR+DK TSGLL+V
Sbjct: 110 VNALMFHTPL------------------------STINGV-VRPGIVHRIDKDTSGLLMV 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K R Y +L G ++ G I+ P+ R +R + A + G
Sbjct: 145 AKNDKAHEALSAQLKDKKNLRQYYALVHGEFIENEGTIKAPLGRSSADRKKQAVVAG--- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV++ G L++ LETGRTHQ
Sbjct: 202 ---GRDAVTHFKVVKRFV--GYTLLQVTLETGRTHQ 232
>gi|256959131|ref|ZP_05563302.1| pseudouridylate synthase [Enterococcus faecalis DS5]
gi|256949627|gb|EEU66259.1| pseudouridylate synthase [Enterococcus faecalis DS5]
Length = 301
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 45 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQDMVVHPSAGH 104
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 105 PKGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 140
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 141 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 200
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 201 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 233
>gi|357637380|ref|ZP_09135255.1| pseudouridine synthase, RluA family [Streptococcus macacae NCTC
11558]
gi|357585834|gb|EHJ53037.1| pseudouridine synthase, RluA family [Streptococcus macacae NCTC
11558]
Length = 296
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/232 (37%), Positives = 130/232 (56%), Gaps = 32/232 (13%)
Query: 10 QVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKP 69
Q+ + + ++ +K + V+ GD + + E + L +AE++PLDIVYEDD V V+NKP
Sbjct: 30 QIKLGTVLVNGNKQKAKYVVQIGDTIVYKLPEEKILAYQAENLPLDIVYEDDEVAVINKP 89
Query: 70 AHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRP 129
MVVHP+ G+ GTLVN +L+H + SSI+G +RP
Sbjct: 90 QGMVVHPSAGHPCGTLVNALLYHI-----------------------KNLSSINGV-VRP 125
Query: 130 GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISR 189
GIVHR+DK TSGLL+VAK++++H L+++ K R Y+++ G PS G IE PI R
Sbjct: 126 GIVHRIDKDTSGLLMVAKNDYAHQILAKELKEKKSLRKYLAIVHGNPSSDRGVIEAPIGR 185
Query: 190 DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R + A + + A + +KV E G +L+E LETGRTHQ
Sbjct: 186 SDRDRKKQAVT------AKGKEAKTHFKVAERF--GNYSLLEVTLETGRTHQ 229
>gi|154504404|ref|ZP_02041142.1| hypothetical protein RUMGNA_01908 [Ruminococcus gnavus ATCC 29149]
gi|336432355|ref|ZP_08612190.1| hypothetical protein HMPREF0991_01309 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153795333|gb|EDN77753.1| pseudouridine synthase, RluA family [Ruminococcus gnavus ATCC
29149]
gi|336018692|gb|EGN48429.1| hypothetical protein HMPREF0991_01309 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 309
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 122/220 (55%), Gaps = 32/220 (14%)
Query: 24 SVSHNVKGG--DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
V N K G D V I EL+ E+IPLDI+YED ++LVVNKP MVVHPAPG+
Sbjct: 49 QVKTNYKLGSEDEVKLQIPELEVPDILPEEIPLDILYEDTDLLVVNKPKGMVVHPAPGHY 108
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
TGTLVN +++HC E S I+G +RPGIVHR+D T+G
Sbjct: 109 TGTLVNALMYHC----------------------RENLSGINGV-MRPGIVHRIDMDTTG 145
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
L+V K++ +H L+EQ K H+I R Y ++ G + SG + PI R P +R +M+
Sbjct: 146 SLLVCKNDRAHQILAEQLKDHSITRRYEAIVHGNLKEDSGTVNAPIGRHPTDRKKMSV-- 203
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HG R A + Y+V+E G +E LETGRTHQ
Sbjct: 204 -HAPHG--REAVTHYRVLERF--GNYTHIECELETGRTHQ 238
>gi|421527424|ref|ZP_15974026.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum ChDC F128]
gi|402256459|gb|EJU06939.1| ribosomal large subunit pseudouridine synthase D [Fusobacterium
nucleatum ChDC F128]
Length = 314
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 125/215 (58%), Gaps = 33/215 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K G+ + I E + + E E+IPLD++YE+++ +V+NK MVVHPA GN +GTLVN
Sbjct: 60 LKLGEKIEVFIPEEENIDIEPENIPLDVIYENEDFIVINKSYGMVVHPAYGNYSGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L++ + L+S N +IRPGI+HRLDK TSGL++VAK+
Sbjct: 120 LLYYTN--NLSSVN----------------------GNIRPGIIHRLDKDTSGLILVAKN 155
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQS--SGRIEVPISRDPNNRIRMAAIPGSNKH 206
+HA L+ F TI + Y+ + G S+ SGRIE I RD +R +MA + + K
Sbjct: 156 NFAHAKLASMFIDKTIHKTYLCIVKGNFSEENLSGRIENLIGRDIKDRKKMAVVKENGK- 214
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A S YKVIE + G +LVE +ETGRTHQ
Sbjct: 215 ----VAISNYKVIEQVE--GYSLVEVAIETGRTHQ 243
>gi|386820779|ref|ZP_10107995.1| pseudouridine synthase, RluA family [Joostella marina DSM 19592]
gi|386425885|gb|EIJ39715.1| pseudouridine synthase, RluA family [Joostella marina DSM 19592]
Length = 345
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 127/234 (54%), Gaps = 45/234 (19%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISE------LQPLRAEAEDIPLDIVYEDDNVLVVNKP 69
++++ + +H VK D V L P E+IPLD+VYEDD +LVVNK
Sbjct: 57 IYVNGTAVKSNHKVKANDEVKVLFEHPPHEYLLTP-----ENIPLDVVYEDDTLLVVNKS 111
Query: 70 AHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 128
A MVVHP GN +GTL+N +++H +LP +SN+ R
Sbjct: 112 AGMVVHPGHGNYSGTLINALIYHFENLP--MNSNE------------------------R 145
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 188
PG+VHR+DK TSGLLVVAK E + AHLS+QF T ER Y++L G + G +E I
Sbjct: 146 PGLVHRIDKDTSGLLVVAKTEEALAHLSKQFFNKTSEREYVALVWGNIEEEEGTVEGHIG 205
Query: 189 RDPNNRIRMAAIP-GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R P NR++M P G N + A + +KV+E G LV +LETGRTHQ
Sbjct: 206 RHPKNRLQMTVFPEGDN----GKEAITHFKVLERF--GYVTLVSCKLETGRTHQ 253
>gi|343084378|ref|YP_004773673.1| RluA family pseudouridine synthase [Cyclobacterium marinum DSM 745]
gi|342352912|gb|AEL25442.1| pseudouridine synthase, RluA family [Cyclobacterium marinum DSM
745]
Length = 344
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 123/221 (55%), Gaps = 31/221 (14%)
Query: 23 LSVSHNVKGGDMVNCTISE-LQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
+ ++ +K GD++ + + + AED+PLDI YEDD+++VV KPA MVVHPA GN
Sbjct: 64 VKANYKIKAGDLITFAMEKSRKETEVVAEDLPLDIRYEDDHLMVVYKPAGMVVHPAHGNW 123
Query: 82 TGTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TGTLVN + ++ +LP L G S RPG+VHR+DK TS
Sbjct: 124 TGTLVNALAYYFKNLPELP------------------------GNSGRPGLVHRIDKDTS 159
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLLV+AK E + HL++QF H+I R Y++L G PS G I VPI R +R M A
Sbjct: 160 GLLVIAKSERAMTHLAKQFFDHSISRSYVALVWGEPSDEEGTINVPIGRGVKDRKVMQAY 219
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + +KVI+ L L+ LETGRTHQ
Sbjct: 220 LEGD---AGKSAITHWKVIKRLR--YVTLLSCELETGRTHQ 255
>gi|313893115|ref|ZP_07826692.1| pseudouridine synthase, RluA family [Veillonella sp. oral taxon 158
str. F0412]
gi|313442468|gb|EFR60883.1| pseudouridine synthase, RluA family [Veillonella sp. oral taxon 158
str. F0412]
Length = 307
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 123/208 (59%), Gaps = 31/208 (14%)
Query: 34 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 93
++ I E + + + EDIPLD++YED ++++VNK MVVHPA GN +GTLVN +L HC
Sbjct: 57 VIQVEIPEPESVEVKPEDIPLDVLYEDHDIIIVNKARGMVVHPAVGNYSGTLVNALLFHC 116
Query: 94 SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHA 153
+D+S I+G IRPGIVHRLDK TSG+++ AK++ +H
Sbjct: 117 ----------------KDLS-------GING-EIRPGIVHRLDKDTSGVMMAAKNDAAHI 152
Query: 154 HLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAA 213
L+EQ K H+ +R Y +L G + G I+ PI R P +R++MA + ++K A
Sbjct: 153 GLAEQVKEHSAKRTYWALVQGNIVEEKGTIKAPIGRHPKDRMKMAVVFENSK-----DAV 207
Query: 214 SRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ ++V+E G LVE LETGRTHQ
Sbjct: 208 THFRVLERY--GHQTLVECNLETGRTHQ 233
>gi|335050076|ref|ZP_08543056.1| pseudouridine synthase, RluA family [Megasphaera sp. UPII 199-6]
gi|333761708|gb|EGL39240.1| pseudouridine synthase, RluA family [Megasphaera sp. UPII 199-6]
Length = 305
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 119/210 (56%), Gaps = 30/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G + + S L AE E+IPL I+YED +++VVNK MVVHPAPGN +GTLVN +L+
Sbjct: 57 GQCITVSFSPPAVLSAEPENIPLHILYEDAHIIVVNKARGMVVHPAPGNPSGTLVNALLY 116
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC E S I+G IRPGIVHRLDK TSG++VVAK + +
Sbjct: 117 HCG---------------------GEL-SGINGV-IRPGIVHRLDKDTSGVMVVAKTDPA 153
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K HT R Y +L G ++ G IE PI R P +RI+MA + K G R
Sbjct: 154 HRGLAAQIKAHTAHRTYWALVHGNIAEERGTIEAPIGRHPKDRIKMAV---TFKGG--RE 208
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V++ G + RLETGRTHQ
Sbjct: 209 ATTHFHVLQRY--GEYTWLACRLETGRTHQ 236
>gi|350265859|ref|YP_004877166.1| RluA family pseudouridine synthase [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349598746|gb|AEP86534.1| pseudouridine synthase, RluA family protein [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 303
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 121/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTL
Sbjct: 52 NYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++ HC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 112 VNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 148 AKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVT----- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + + V+E LVE +LETGRTHQ
Sbjct: 203 -RDGKNAVTHFHVLERFQ--EFTLVECQLETGRTHQ 235
>gi|290968210|ref|ZP_06559753.1| pseudouridine synthase, RluA family [Megasphaera genomosp. type_1
str. 28L]
gi|290781692|gb|EFD94277.1| pseudouridine synthase, RluA family [Megasphaera genomosp. type_1
str. 28L]
Length = 305
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 118/210 (56%), Gaps = 30/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G + + S L AE E+IPL I+YED +++VVNK MVVHPAPGN +GTLVN +L+
Sbjct: 57 GQCITVSFSPSAVLSAEPENIPLHILYEDAHIIVVNKARGMVVHPAPGNPSGTLVNALLY 116
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC S I+G IRPGIVHRLDK TSG++VVAK + +
Sbjct: 117 HCGGEL----------------------SGINGV-IRPGIVHRLDKDTSGVMVVAKTDPA 153
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K HT R Y +L G ++ G IE PI R P +RI+MA + K G R
Sbjct: 154 HRGLAAQIKAHTAHRTYWALVHGNIAEERGTIEAPIGRHPKDRIKMAV---TFKGG--RE 208
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V++ G + RLETGRTHQ
Sbjct: 209 ATTHFHVLQRY--GEYTWLACRLETGRTHQ 236
>gi|315924170|ref|ZP_07920396.1| ribosomal large subunit pseudouridine synthase D [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622572|gb|EFV02527.1| ribosomal large subunit pseudouridine synthase D [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 307
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 127/216 (58%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K + + I + P + E I LDIVYED +V+VVNKP+ MVVHPA G +GTL
Sbjct: 52 AYRLKADERIVIKIPDPVPCQVMPESIDLDIVYEDGDVIVVNKPSGMVVHPASGTQSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ H +D+S I+G + RPGIVHR+DK TSG+LVV
Sbjct: 112 VNALMAH----------------TKDLS-------GINGVN-RPGIVHRIDKDTSGILVV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H HL+ Q H++ R Y++L G ++SG +++P+ R P +R+RMA +
Sbjct: 148 AKNDLAHRHLARQLAEHSMVRQYVALVKGNIVENSGTVDMPVGRHPVDRVRMAVVE---- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + ++VIE L G V +RLETGRTHQ
Sbjct: 204 --NGKSAVTHFEVIERL--GDFTYVAFRLETGRTHQ 235
>gi|307273068|ref|ZP_07554314.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0855]
gi|422695134|ref|ZP_16753122.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4244]
gi|422728751|ref|ZP_16785157.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0012]
gi|424761167|ref|ZP_18188749.1| pseudouridine synthase, RluA family [Enterococcus faecalis R508]
gi|306510053|gb|EFM79077.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0855]
gi|315147417|gb|EFT91433.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4244]
gi|315150758|gb|EFT94774.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0012]
gi|402402430|gb|EJV35146.1| pseudouridine synthase, RluA family [Enterococcus faecalis R508]
Length = 310
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 54 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGH 113
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 114 PNGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 149
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 150 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 209
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 210 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 242
>gi|414163774|ref|ZP_11420021.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
gi|410881554|gb|EKS29394.1| RluA family pseudouridine synthase [Afipia felis ATCC 53690]
Length = 343
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 123/227 (54%), Gaps = 37/227 (16%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
L ++ VK + + + P E E+IPLDIVYEDD++LV+NKP +VVHPA G+ T
Sbjct: 64 LDPAYQVKADETIIIEVPPAVPAEPEGENIPLDIVYEDDDLLVLNKPKGLVVHPAAGHET 123
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN ++ HC S S G RPGIVHRLDK T+GL
Sbjct: 124 GTLVNALIAHCGA-----------------------SLSGIGGVRRPGIVHRLDKDTTGL 160
Query: 143 LVVAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 198
+VVAK++ +H L+ QF H + R Y++ G PS+ G I+ PI R P R +MA
Sbjct: 161 MVVAKNDRAHQSLTAQFADHGRTGALRRGYMAFVWGAPSRLHGTIDQPIDRHPFAREKMA 220
Query: 199 AIPGSNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
G RHA + ++++E G ++L+ +LETGRTHQ
Sbjct: 221 VRQG------GRHAVTHWELLESFEGRDGKPIASLLACQLETGRTHQ 261
>gi|407787124|ref|ZP_11134266.1| ribosomal large subunit pseudouridine synthase D [Celeribacter
baekdonensis B30]
gi|407199950|gb|EKE69962.1| ribosomal large subunit pseudouridine synthase D [Celeribacter
baekdonensis B30]
Length = 339
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 126/228 (55%), Gaps = 39/228 (17%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
+ GD V T+ + + AEDI L+++YEDD+++V+NKP MVVHPAPG+ +GTLVN
Sbjct: 59 KIAAGDRVEITVEQAADVEIVAEDIALEVIYEDDDLIVINKPVGMVVHPAPGSPSGTLVN 118
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSIS--GASIRPGIVHRLDKGTSGLLVV 145
+++H F ++S G RPGIVHR+DK TSGLLVV
Sbjct: 119 ALMYH-------------------------FGDNLSGIGGEKRPGIVHRIDKDTSGLLVV 153
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMAAIPGS 203
AK + +H L++QF+ HT+ER Y +L G+P R+ +S + +N +R+ + G
Sbjct: 154 AKSDKAHQGLAKQFEKHTVERKYYALVYGMPDIMDPRLRGVKGVSFEGSNVMRITTMLGR 213
Query: 204 NK---------HGQARHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
+K + RHA +R +V+E LVE LETGRTHQ
Sbjct: 214 HKADRQKQAVSFSEGRHAITRARVVETYGTPVQLCLVECWLETGRTHQ 261
>gi|398304126|ref|ZP_10507712.1| pseudouridylate synthase [Bacillus vallismortis DV1-F-3]
Length = 303
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 121/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ TGTL
Sbjct: 52 NYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++ HC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 112 VNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 148 AKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVA----- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + + V+E LVE +LETGRTHQ
Sbjct: 203 -RDGKNAVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|301301197|ref|ZP_07207353.1| pseudouridine synthase, RluA family [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851196|gb|EFK78924.1| pseudouridine synthase, RluA family [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 298
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 125/221 (56%), Gaps = 33/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
D ++ V GD + E++ L E E+IPLDIVYEDD+V+VVNKP MVVHP+PG+
Sbjct: 44 DVKKANYKVNLGDEITFDKPEVKKLSLEPENIPLDIVYEDDDVIVVNKPQGMVVHPSPGH 103
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TLVN +L+H L S+I+G + RPGIVHR+DK TS
Sbjct: 104 FEHTLVNALLYHSPL------------------------STING-TYRPGIVHRIDKDTS 138
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R YI+L G + SG I+ P+ R +R + A +
Sbjct: 139 GLLMVAKNDMAHQSLAKQLKDKTNTREYIALVHGNIKEDSGTIDAPLGRSKVDRKKQAVV 198
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V++ G LV+ LETGRTHQ
Sbjct: 199 K------DGRNAVTHFEVLKRY--GDYTLVKCVLETGRTHQ 231
>gi|428279141|ref|YP_005560876.1| hypothetical protein BSNT_02552 [Bacillus subtilis subsp. natto
BEST195]
gi|291484098|dbj|BAI85173.1| hypothetical protein BSNT_02552 [Bacillus subtilis subsp. natto
BEST195]
Length = 303
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 124/219 (56%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 145 LMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTV--- 201
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ G++ A + + V+E LVE +LETGRTHQ
Sbjct: 202 -TRDGKS--AVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|114771661|ref|ZP_01449065.1| putative Pseudouridine synthase, Rlu [Rhodobacterales bacterium
HTCC2255]
gi|114547733|gb|EAU50623.1| putative Pseudouridine synthase, Rlu [alpha proteobacterium
HTCC2255]
Length = 341
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 121/213 (56%), Gaps = 50/213 (23%)
Query: 47 AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAF 106
A+ E+IPLDIV+EDD++++VNKPA MVVHPAPG+ GTLVN +L++
Sbjct: 80 AQPENIPLDIVFEDDHLIIVNKPAGMVVHPAPGSENGTLVNALLYY-------------- 125
Query: 107 SDAEDISDDEEFSSSISG--ASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTI 164
F ++SG RPGIVHR+DK TSGLLVVAK + +HA L++QF H+I
Sbjct: 126 -----------FDGNLSGVGGEKRPGIVHRIDKDTSGLLVVAKSDSAHAGLAKQFADHSI 174
Query: 165 ERVYISLTSGVPSQSSG----------------RIEVPISRDPNNRIRMAAIPGSNKHGQ 208
R Y++++ GVP +S R+ I+R +R RMA +
Sbjct: 175 SRRYLAVSKGVPQKSDPRLAGLRGVNFEDGGVIRVATNIARHKTDRKRMAVV-----QDA 229
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RHA +R V+E A SAL+E LETGRTHQ
Sbjct: 230 GRHAITRATVLENFA--HSALMECWLETGRTHQ 260
>gi|406981013|gb|EKE02539.1| Pseudouridine synthase [uncultured bacterium]
Length = 310
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 120/216 (55%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ +K D V I E +PL + E+IPLDI YED+N+++VNKP M+ HP TL
Sbjct: 57 SYKLKYADEVVVRIPEAKPLELKPENIPLDIRYEDENIIIVNKPTGMLTHPTAIEREHTL 116
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC + S I+G +RPGIVHRLD+ TSGLL+V
Sbjct: 117 VNALLYHC----------------------DGNLSGINGV-MRPGIVHRLDRDTSGLLMV 153
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++++H LSEQ K T +R Y+++ V SG I+ PI R P R +M + G
Sbjct: 154 AKNDYAHQFLSEQIKNKTAKRQYLAVVLSVIKADSGTIDAPIDRHPTQRYKMGVVEG--- 210
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + +KV++ L+E LETGRTHQ
Sbjct: 211 ---GKNAVTHWKVLDRFE--QFTLIEATLETGRTHQ 241
>gi|229061498|ref|ZP_04198842.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH603]
gi|228717732|gb|EEL69382.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus cereus
AH603]
Length = 302
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 124/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + TI E + L + ED+ L++ YED +VLVVNKP MVVHPAPG+ GTL
Sbjct: 53 NYKVKVNDEITVTIPEPEELDIQPEDMNLEVYYEDADVLVVNKPRGMVVHPAPGHTKGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD R M ++
Sbjct: 149 AKNDVAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKERQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G ++A + ++V++ LVE RLETGRTHQ
Sbjct: 205 NG--KNAVTHFQVLDRFK--DFTLVECRLETGRTHQ 236
>gi|449094239|ref|YP_007426730.1| hypothetical protein C663_1590 [Bacillus subtilis XF-1]
gi|449028154|gb|AGE63393.1| hypothetical protein C663_1590 [Bacillus subtilis XF-1]
Length = 303
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 124/219 (56%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 145 LMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTV--- 201
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ G++ A + + V+E LVE +LETGRTHQ
Sbjct: 202 -TRDGKS--AVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|408789810|ref|ZP_11201453.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
florum 2F]
gi|408520959|gb|EKK20973.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
florum 2F]
Length = 303
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 122/227 (53%), Gaps = 32/227 (14%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
A+ +S ++ K G ++ I +P+ + E +PL IVYEDD VLVV+KP MVV
Sbjct: 39 AITVSEQSHKANYQPKPGATISIEIPTPEPIDVQPEPLPLAIVYEDDQVLVVDKPQGMVV 98
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPG+ TLVN IL+H LP I+G IRPGIVHR
Sbjct: 99 HPAPGHPNHTLVNAILYHTKLP------------------------GING-EIRPGIVHR 133
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK TSGLL+VAK + + LS+Q + T R Y++L G Q G I+ P+ R +R
Sbjct: 134 IDKDTSGLLMVAKTKQAQESLSQQLQAKTNRRKYLALVHGNLKQPKGTIDAPLGRSHTDR 193
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + G R A + ++V+E G L+E +LETGRTHQ
Sbjct: 194 KKQAVVTG------GRPAVTHFRVLEHF-GSDYTLIECQLETGRTHQ 233
>gi|392390780|ref|YP_006427383.1| ribosomal large subunit pseudouridine synthase D [Ornithobacterium
rhinotracheale DSM 15997]
gi|390521858|gb|AFL97589.1| ribosomal large subunit pseudouridine synthase D [Ornithobacterium
rhinotracheale DSM 15997]
Length = 349
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 127/220 (57%), Gaps = 35/220 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEA---EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
++ VK GD V +S P R ++IP+DIVYED++V+VVNK MVVHP GN +
Sbjct: 69 NYRVKAGDEVKVVLS--YPPRENVIIPQNIPVDIVYEDESVIVVNKAPGMVVHPGHGNYS 126
Query: 83 GTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
GTLVN + +H +LP+L + + RPG+VHR+DK TSG
Sbjct: 127 GTLVNALKYHFDNLPSLTAELE------------------------RPGLVHRIDKDTSG 162
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LLV+AK E++ HL++QF T R+Y ++ G + G I I R+PNNR++MA
Sbjct: 163 LLVIAKTEYAMDHLAKQFFNRTTRRLYTAIVWGNIEEDEGTIVGHIGRNPNNRMQMAVFE 222
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ Q +HA + +KV+E L G +V+ +LETGRTHQ
Sbjct: 223 DGS---QGKHAVTHFKVLERL--GYITVVQCKLETGRTHQ 257
>gi|228992627|ref|ZP_04152553.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
pseudomycoides DSM 12442]
gi|229006175|ref|ZP_04163861.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock1-4]
gi|228755016|gb|EEM04375.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock1-4]
gi|228766959|gb|EEM15596.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
pseudomycoides DSM 12442]
Length = 302
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 124/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + I + + L ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKVNDEIAVAIPDPEELDILPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD +R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKDRQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|228998673|ref|ZP_04158260.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock3-17]
gi|228761141|gb|EEM10100.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus mycoides
Rock3-17]
Length = 302
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 124/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ VK D + I + + L ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 53 NYKVKVNDEIAVAIPDPEELDILPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++HHC+ D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMHHCT----------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV G I+ PI RD +R M ++
Sbjct: 149 AKNDMAHESLVNQLVAKTVTRRYKAIVHGVIPHDKGTIDAPIGRDKKDRQSMTV----DE 204
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G +HA + ++V+E LVE RLETGRTHQ
Sbjct: 205 NG--KHAVTHFQVLERFK--DFTLVECRLETGRTHQ 236
>gi|227518911|ref|ZP_03948960.1| pseudouridylate synthase [Enterococcus faecalis TX0104]
gi|229549858|ref|ZP_04438583.1| pseudouridylate synthase [Enterococcus faecalis ATCC 29200]
gi|293383481|ref|ZP_06629394.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis R712]
gi|293388864|ref|ZP_06633350.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis S613]
gi|307269533|ref|ZP_07550872.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4248]
gi|307277912|ref|ZP_07558996.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0860]
gi|307289260|ref|ZP_07569216.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0109]
gi|312901873|ref|ZP_07761138.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0470]
gi|312907690|ref|ZP_07766681.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
512]
gi|312910308|ref|ZP_07769155.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
516]
gi|312951652|ref|ZP_07770547.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0102]
gi|384513397|ref|YP_005708490.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis OG1RF]
gi|422692868|ref|ZP_16750883.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0031]
gi|422699060|ref|ZP_16756933.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1346]
gi|422701912|ref|ZP_16759752.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1342]
gi|422704628|ref|ZP_16762438.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1302]
gi|422706513|ref|ZP_16764211.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0043]
gi|422714465|ref|ZP_16771191.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309A]
gi|422715722|ref|ZP_16772438.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309B]
gi|422727205|ref|ZP_16783648.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0312]
gi|422731593|ref|ZP_16787951.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0645]
gi|422869198|ref|ZP_16915718.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1467]
gi|424676609|ref|ZP_18113480.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV103]
gi|424681575|ref|ZP_18118362.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV116]
gi|424683765|ref|ZP_18120515.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV129]
gi|424686331|ref|ZP_18122999.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV25]
gi|424690397|ref|ZP_18126932.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV31]
gi|424695490|ref|ZP_18131873.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV37]
gi|424696771|ref|ZP_18133112.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV41]
gi|424699843|ref|ZP_18136054.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV62]
gi|424703143|ref|ZP_18139277.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV63]
gi|424707360|ref|ZP_18143344.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV65]
gi|424716980|ref|ZP_18146278.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV68]
gi|424720558|ref|ZP_18149659.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV72]
gi|424724107|ref|ZP_18153056.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV73]
gi|424733698|ref|ZP_18162253.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV81]
gi|424744003|ref|ZP_18172308.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV85]
gi|424750489|ref|ZP_18178553.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV93]
gi|227073600|gb|EEI11563.1| pseudouridylate synthase [Enterococcus faecalis TX0104]
gi|229305127|gb|EEN71123.1| pseudouridylate synthase [Enterococcus faecalis ATCC 29200]
gi|291079272|gb|EFE16636.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis R712]
gi|291081789|gb|EFE18752.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis S613]
gi|306499969|gb|EFM69330.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0109]
gi|306505309|gb|EFM74495.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0860]
gi|306514153|gb|EFM82729.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX4248]
gi|310626718|gb|EFQ10001.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
512]
gi|310630369|gb|EFQ13652.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0102]
gi|311289581|gb|EFQ68137.1| pseudouridine synthase, RluA family [Enterococcus faecalis DAPTO
516]
gi|311291066|gb|EFQ69622.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0470]
gi|315152327|gb|EFT96343.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0031]
gi|315156128|gb|EFU00145.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0043]
gi|315158230|gb|EFU02247.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0312]
gi|315162361|gb|EFU06378.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0645]
gi|315163874|gb|EFU07891.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1302]
gi|315169613|gb|EFU13630.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1342]
gi|315172438|gb|EFU16455.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1346]
gi|315576067|gb|EFU88258.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309B]
gi|315580642|gb|EFU92833.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0309A]
gi|327535286|gb|AEA94120.1| ribosomal large subunit pseudouridine synthase D [Enterococcus
faecalis OG1RF]
gi|329571882|gb|EGG53560.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX1467]
gi|402350674|gb|EJU85572.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV116]
gi|402356621|gb|EJU91352.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV103]
gi|402364130|gb|EJU98573.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV129]
gi|402364240|gb|EJU98682.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV31]
gi|402367865|gb|EJV02202.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV25]
gi|402368185|gb|EJV02505.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV37]
gi|402375342|gb|EJV09329.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV62]
gi|402377100|gb|EJV11011.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV41]
gi|402384958|gb|EJV18499.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV65]
gi|402385148|gb|EJV18688.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV63]
gi|402386328|gb|EJV19834.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV68]
gi|402391311|gb|EJV24622.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV81]
gi|402393029|gb|EJV26259.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV72]
gi|402395918|gb|EJV28995.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV73]
gi|402399426|gb|EJV32298.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV85]
gi|402406788|gb|EJV39334.1| pseudouridine synthase, RluA family [Enterococcus faecalis ERV93]
Length = 310
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 54 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGH 113
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 114 PKGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 149
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 150 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 209
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 210 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 242
>gi|291514728|emb|CBK63938.1| ribosomal large subunit pseudouridine synthase D [Alistipes shahii
WAL 8301]
Length = 361
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 113/194 (58%), Gaps = 30/194 (15%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 108
AEDIPLDI YED +L+V+KPA +VVHP GN +GTLVN ++HH + + + Q
Sbjct: 103 AEDIPLDIPYEDQWLLLVDKPAGLVVHPGVGNYSGTLVNALMHHLNKQGIPAEEQN---- 158
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
R G+VHR+DK TSGLLV+AKDE +HA L++QF HTI+R Y
Sbjct: 159 -------------------RAGLVHRIDKNTSGLLVIAKDEQTHARLAKQFFDHTIQRRY 199
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP-GSNKHGQARHAASRYKVIEILAGGGS 227
++L G + G I I R P +R +M GS+ +HA + +KV++ G
Sbjct: 200 VALVWGNFDEDEGTITGNIGRSPKDRQKMFVFADGSD----GKHAVTHWKVLKRY--GYV 253
Query: 228 ALVEWRLETGRTHQ 241
LVE RLETGRTHQ
Sbjct: 254 TLVECRLETGRTHQ 267
>gi|323339837|ref|ZP_08080106.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
gi|417974093|ref|ZP_12614917.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
gi|323092710|gb|EFZ35313.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
gi|346329548|gb|EGX97843.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
ruminis ATCC 25644]
Length = 301
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 121/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ E + L E+IPLDIVYEDD+V+V+NKP MVVHPAPG+ TL
Sbjct: 48 KYKVKSGDVIRLEEPETKTLELRPENIPLDIVYEDDDVIVINKPQGMVVHPAPGHDEHTL 107
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC L S+I+G + RPGIVHR+DK TSGLL+V
Sbjct: 108 VNALLYHCPL------------------------STING-TFRPGIVHRIDKDTSGLLMV 142
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L++Q K T R Y++L G ++ G I PI R +R + A +
Sbjct: 143 AKNDKAHRSLAKQLKDKTNIREYVALVHGRIAEDEGTINAPIGRSLKDRKKQAVVK---- 198
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V++ V+ LETGRTHQ
Sbjct: 199 --DGRNAVTHFEVLKKYR--DYTFVKCILETGRTHQ 230
>gi|227813199|ref|YP_002813208.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. CDC 684]
gi|227006370|gb|ACP16113.1| ribosomal large subunit pseudouridine synthase, RluA family
[Bacillus anthracis str. CDC 684]
Length = 239
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/204 (43%), Positives = 120/204 (58%), Gaps = 32/204 (15%)
Query: 38 TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPT 97
TI E + L + ED+ L+I YED +VLVVNKP MVVHPAPG+ +GTLVNG++HHC+
Sbjct: 2 TIPEPEELDIQPEDMNLEIYYEDADVLVVNKPRGMVVHPAPGHTSGTLVNGLMHHCT--- 58
Query: 98 LASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSE 157
D+ S I+G +RPGIVHR+DK TSGLL+VAK++ +H L
Sbjct: 59 -------------DL-------SGINGV-MRPGIVHRIDKDTSGLLMVAKNDMAHESLVN 97
Query: 158 QFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYK 217
Q T+ R Y ++ GV G I+ PI+RD R M +++G +HA + ++
Sbjct: 98 QLVAKTVTRRYKAIVHGVIPHDKGTIDAPIARDKKERQSMTV----DENG--KHAVTHFQ 151
Query: 218 VIEILAGGGSALVEWRLETGRTHQ 241
V+E LVE RLETGRTHQ
Sbjct: 152 VLERFK--DFTLVECRLETGRTHQ 173
>gi|225027663|ref|ZP_03716855.1| hypothetical protein EUBHAL_01922 [Eubacterium hallii DSM 3353]
gi|224954977|gb|EEG36186.1| pseudouridine synthase, RluA family [Eubacterium hallii DSM 3353]
Length = 319
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 29/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K D V + L+ L E + LDI+YED++V+++NKP MVVHP PG TGTLVNG
Sbjct: 71 LKVEDNVVICVPPLKELEVLPEKMDLDIIYEDEDVILINKPKDMVVHPCPGRYTGTLVNG 130
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L+HC + S I+G +RPGIVHR+DK T+G+LVV K+
Sbjct: 131 LLYHCR----------------------DNLSGINGV-LRPGIVHRIDKDTTGVLVVCKN 167
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L+EQ K H+I R Y ++ +Q G ++ PI R P +R +MA P + K
Sbjct: 168 DMAHKSLAEQLKEHSITRKYEAIVYNNFTQEEGTVDAPIGRSPADRKKMAVEPKNGK--- 224
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + YKV+ L + +E +LETGRTHQ
Sbjct: 225 --RAVTHYKVLSHLNHQFNH-IECQLETGRTHQ 254
>gi|239826543|ref|YP_002949167.1| pseudouridine synthase [Geobacillus sp. WCH70]
gi|239806836|gb|ACS23901.1| pseudouridine synthase, RluA family [Geobacillus sp. WCH70]
Length = 304
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 121/219 (55%), Gaps = 31/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ GD+V + E +PL E+IPLDI YED +VLVVNKP MVVHPAPG+
Sbjct: 49 VKANYKSSAGDVVVVRLPEPEPLHVVPENIPLDIYYEDADVLVVNKPRGMVVHPAPGHMR 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L HC+ D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNALLAHCT----------------DL-------SGINGV-LRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L +Q T+ R Y ++ GV G I+ PI RD +R +M
Sbjct: 145 LMVAKNDMAHQSLVDQLVKKTVTRKYKAIVHGVIPHDYGTIDAPIGRDKRDRKKMTVTEE 204
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ K A + ++V+E VE +LETGRTHQ
Sbjct: 205 NGK-----EAVTHFRVLERFR--HYTFVECQLETGRTHQ 236
>gi|194468025|ref|ZP_03074011.1| pseudouridine synthase, RluA family [Lactobacillus reuteri 100-23]
gi|194452878|gb|EDX41776.1| pseudouridine synthase, RluA family [Lactobacillus reuteri 100-23]
Length = 303
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 115/210 (54%), Gaps = 33/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD V E Q + EDIPLDIVYEDD+V+VVNKP MVVHPAPG+ TLVN +L+
Sbjct: 58 GDHVQIIPEEPQKIDLAPEDIPLDIVYEDDDVIVVNKPQGMVVHPAPGHPDHTLVNALLY 117
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
H L S+I+G RPGIVHR+DK TSGLL+VAK++ +
Sbjct: 118 HSPL------------------------STING-EFRPGIVHRIDKDTSGLLMVAKNDMA 152
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L+ Q K T +R Y++L GV + G I+ P+ R +R + + RH
Sbjct: 153 HRSLTAQLKAKTNKREYVALVHGVIKEDKGTIDAPLGRSLKDRKKQGVVV------DGRH 206
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + + V+E LV +LETGRTHQ
Sbjct: 207 AVTHFNVLERFK--NYTLVACQLETGRTHQ 234
>gi|304393319|ref|ZP_07375247.1| ribosomal large subunit pseudouridine synthase D [Ahrensia sp.
R2A130]
gi|303294326|gb|EFL88698.1| ribosomal large subunit pseudouridine synthase D [Ahrensia sp.
R2A130]
Length = 365
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 124/227 (54%), Gaps = 35/227 (15%)
Query: 25 VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
S + GD+V + + + E+IPLDI++EDD+++V+ KPA MVVHPAPGN +GT
Sbjct: 85 TSTKISNGDVVRFLMPPPEDAIPQPENIPLDILHEDDDLIVLIKPAGMVVHPAPGNWSGT 144
Query: 85 LVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLV 144
LVN +LHHC + + S G RPGIVHRLDK TSG++V
Sbjct: 145 LVNALLHHC-----------------------DGNLSGIGGVKRPGIVHRLDKDTSGVMV 181
Query: 145 VAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
VAK +H L EQF H +ER Y +L G P + G+++ I R P R++ A +
Sbjct: 182 VAKSYRAHIDLQEQFADHGRTGPLERAYWALAWGAPPRMKGKVDTLIGRHPTRRVQRAVV 241
Query: 201 PGSNKHGQARHAASRYKVIEIL------AGGGSALVEWRLETGRTHQ 241
A+HA + Y+V++ ++L+E +LETGRTHQ
Sbjct: 242 --EEGAPDAKHAITHYEVVKRFEDAERSGEAMASLIECKLETGRTHQ 286
>gi|261417496|ref|YP_003251179.1| RluA family pseudouridine synthase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385789406|ref|YP_005820529.1| ribosomal large subunit pseudouridine synthase D [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261373952|gb|ACX76697.1| pseudouridine synthase, RluA family [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326984|gb|ADL26185.1| ribosomal large subunit pseudouridine synthase D [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 424
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 115/194 (59%), Gaps = 31/194 (15%)
Query: 48 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 107
E EDIPL+IVYEDD+++V+NKP ++VVHP G + GTL +L+H
Sbjct: 72 EPEDIPLNIVYEDDDIVVINKPRNLVVHPGNGVSKGTLAAALLYHF-------------- 117
Query: 108 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERV 167
+E S+++G +RPGIVHRLDK T GL+VVAK++ +H HL+ Q + T+ R
Sbjct: 118 --------KENLSTVNG-PLRPGIVHRLDKDTPGLMVVAKNDAAHRHLAHQLETRTLHRT 168
Query: 168 YISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGS 227
Y +L G P G I+ PI R+P NR++MA + G K + + A ++ I +
Sbjct: 169 YNALVWGCPRDLEGTIDAPIGRNPKNRLKMAVVKGG-KESRTHYVAKQFFAI-------A 220
Query: 228 ALVEWRLETGRTHQ 241
L+E +LE+GRTHQ
Sbjct: 221 TLLELQLESGRTHQ 234
>gi|225572138|ref|ZP_03781002.1| hypothetical protein RUMHYD_00432 [Blautia hydrogenotrophica DSM
10507]
gi|225040404|gb|EEG50650.1| pseudouridine synthase, RluA family [Blautia hydrogenotrophica DSM
10507]
Length = 307
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 126/227 (55%), Gaps = 30/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+F+ S ++ GD + + + + E ED+ LDI+YED +LV+NKP MVV
Sbjct: 44 GVFIDGKVAKASDRLQCGDEIYFQMPKSREPDIEPEDLSLDILYEDPYLLVINKPKGMVV 103
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HP PG+ +GTLVNG+L HC S I+G +RPGIVHR
Sbjct: 104 HPCPGHYSGTLVNGVLFHCKGQL----------------------SGINGV-LRPGIVHR 140
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK T+G LVV KD+ +H +L+ Q HTI R Y ++ +G S G +E PI R P +R
Sbjct: 141 IDKDTTGALVVCKDDQTHRNLAVQLAEHTITRRYRAIVTGNLSADEGTVEGPIGRHPVDR 200
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+M+ + K+G + A + Y+V+E G + +E RLETGRTHQ
Sbjct: 201 KKMSI---NFKNG--KDAVTHYRVLERF--GKATYIECRLETGRTHQ 240
>gi|1491643|emb|CAA61435.1| ORFA [Chloroflexus aurantiacus J-10-fl]
Length = 253
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 121/213 (56%), Gaps = 34/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ G ++ TI P AE IPLD+VYED ++ V+NKPA MVVHPAPG+ GTLVN
Sbjct: 3 VRPGAVIQLTIPPPIPTELVAEPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNA 62
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L P LA G +RPGIVHRLD+ TSGLLV+A+
Sbjct: 63 LL--ARYPDLA-----------------------IGGELRPGIVHRLDRDTSGLLVIARH 97
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ + L +Q + + ++Y +L G P + +G I+ PI RDP +R+RMA +P
Sbjct: 98 DQAMRSLVDQQQARRMRKIYQALVIGRPPE-TGTIDAPIGRDPRDRLRMAVVP------D 150
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y++++ G +L+E +LETGRTHQ
Sbjct: 151 GRPARTHYRLLDTF--GDYSLLEVQLETGRTHQ 181
>gi|149916264|ref|ZP_01904785.1| NAD(P) transhydrogenase subunit alpha [Roseobacter sp. AzwK-3b]
gi|149809924|gb|EDM69775.1| NAD(P) transhydrogenase subunit alpha [Roseobacter sp. AzwK-3b]
Length = 348
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 127/222 (57%), Gaps = 35/222 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + T+ + Q AE IPLDIV+EDD+++V++KPA MVVHPAPG+ GTLVN +LH
Sbjct: 63 GDSIAITVPQAQDTHIAAESIPLDIVFEDDDLIVIDKPAGMVVHPAPGSPGGTLVNALLH 122
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC + S + G RPGIVHR+DK TSGLLVVAK + +
Sbjct: 123 HCG----------------------DTLSGVGGMK-RPGIVHRIDKDTSGLLVVAKSDRA 159
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPGSNKH 206
H L+ QF+ H++ER Y ++ GVP + R+ +S + N I++ A +++
Sbjct: 160 HHGLAAQFEDHSVERYYRAVVYGVPDAADPRLRGLRGVSFETGNIIKITSGLARHRTDRQ 219
Query: 207 GQA------RHAASRYKVIEILAGGG-SALVEWRLETGRTHQ 241
QA RHA +R +V++ +AL+E LETGRTHQ
Sbjct: 220 KQAVTFEGGRHAVTRARVVDTFGQPPVAALMECWLETGRTHQ 261
>gi|358466154|ref|ZP_09176008.1| pseudouridine synthase, RluA family, partial [Fusobacterium sp.
oral taxon 370 str. F0437]
gi|357069327|gb|EHI79251.1| pseudouridine synthase, RluA family, partial [Fusobacterium sp.
oral taxon 370 str. F0437]
Length = 244
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 120/203 (59%), Gaps = 33/203 (16%)
Query: 41 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 100
E + + EAE+IPLDIV+E+D+ ++VNK +MVVHPA GN TGTLVN +L++ + L+S
Sbjct: 1 EEENIDIEAENIPLDIVFENDDFILVNKKYNMVVHPAYGNYTGTLVNALLYYTN--NLSS 58
Query: 101 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFK 160
N +IRPGI+HRLDK TSGL++VAK+ ++HA LS F
Sbjct: 59 VN----------------------GNIRPGIIHRLDKDTSGLILVAKNNYAHAKLSSMFT 96
Query: 161 LHTIERVYISLTSGVPSQSS--GRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKV 218
TI + Y+ + G S + GRIE I RD +R +MA + + + A S YKV
Sbjct: 97 DKTIHKTYLCIVKGNFSDENLEGRIENLIGRDTKDRKKMAVVKEN-----GKLAISNYKV 151
Query: 219 IEILAGGGSALVEWRLETGRTHQ 241
+E + +LVE +ETGRTHQ
Sbjct: 152 VEQVK--DYSLVEVLIETGRTHQ 172
>gi|257082401|ref|ZP_05576762.1| pseudouridylate synthase [Enterococcus faecalis E1Sol]
gi|256990431|gb|EEU77733.1| pseudouridylate synthase [Enterococcus faecalis E1Sol]
Length = 301
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 45 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGH 104
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 105 PKGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 140
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 141 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINTPIGRSKVDRKMQAVI 200
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 201 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 233
>gi|347525390|ref|YP_004832138.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
ruminis ATCC 27782]
gi|345284349|gb|AEN78202.1| ribosomal large subunit pseudouridine synthase [Lactobacillus
ruminis ATCC 27782]
Length = 301
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 121/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ E + L E+IPLDIVYEDD+V+V+NKP MVVHPAPG+ TL
Sbjct: 48 KYKVKSGDVIRLEEPETKTLELRPENIPLDIVYEDDDVIVINKPQGMVVHPAPGHDEHTL 107
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC L S+I+G + RPGIVHR+DK TSGLL+V
Sbjct: 108 VNALLYHCPL------------------------STING-TFRPGIVHRIDKDTSGLLMV 142
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L++Q K T R Y++L G ++ G I PI R +R + A +
Sbjct: 143 AKNDKAHRSLAKQLKDKTNIREYVALVHGRIAEDEGTINAPIGRSLKDRKKQAVVK---- 198
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V++ V+ LETGRTHQ
Sbjct: 199 --DGRNAVTHFEVLKRYR--DYTFVKCILETGRTHQ 230
>gi|395766553|ref|ZP_10447093.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
gi|395415887|gb|EJF82311.1| RluA family pseudouridine synthase [Bartonella doshiae NCTC 12862]
Length = 333
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 41/246 (16%)
Query: 10 QVSVLALFLSMDKLSVSH---NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 66
Q+ + FL +D + +K ++ T+ L+ + E I LDI++EDD+V+V+
Sbjct: 33 QILIREGFLKIDNRIIKEPKTKLKQNQIIELTMPVLREAKPSGEAIALDILFEDDHVIVI 92
Query: 67 NKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS 126
NKPA +VVHP GN TGTLVN +++HC +S+SG
Sbjct: 93 NKPAGLVVHPGNGNWTGTLVNALIYHC-------------------------GNSLSGIG 127
Query: 127 --IRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSS 180
RPGIVHRLDK TSG++VVAK++ +H LS QF H ++R Y +L G PS++
Sbjct: 128 GIKRPGIVHRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTSALDRRYRALIWGAPSRNV 187
Query: 181 GRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLE 235
I+ + R P+NR + A + N H ARHA + ++E A ++L+E RLE
Sbjct: 188 LTIDAFLGRSPHNRTKQAVVYSQNPH--ARHAVTHLFLLEKYGACTDATSFASLLECRLE 245
Query: 236 TGRTHQ 241
TGRTHQ
Sbjct: 246 TGRTHQ 251
>gi|260425298|ref|ZP_05779278.1| ribosomal large subunit pseudouridine synthase D [Citreicella sp.
SE45]
gi|260423238|gb|EEX16488.1| ribosomal large subunit pseudouridine synthase D [Citreicella sp.
SE45]
Length = 345
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 125/231 (54%), Gaps = 44/231 (19%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD + T+ + + EDIPL IV+ED++++VV+KPA MVVHPAPG +GTLVN
Sbjct: 58 RVAEGDEILITVPQAEDSHIGPEDIPLSIVWEDEDLVVVDKPAGMVVHPAPGTPSGTLVN 117
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVV 145
+LHH F +SG RPGIVHR+DK TSGLLVV
Sbjct: 118 ALLHH-------------------------FGGRLSGVGGVARPGIVHRIDKDTSGLLVV 152
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI--EVPISRDPNNRIRMAAIPGS 203
AK + +H L+ QF+ H+ +R Y+++ GVP R+ +S +P IR+ + G
Sbjct: 153 AKSDRAHHGLAAQFEAHSADRAYLAVVYGVPDAGDPRLVGTRGVSMEPGGVIRIQS--GL 210
Query: 204 NKH------------GQARHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
+H GQ RHA +R V+E + ALV+ RLETGRTHQ
Sbjct: 211 ARHKTDRQRQAVYFDGQGRHATTRASVLETFGTPPAMALVQCRLETGRTHQ 261
>gi|256964973|ref|ZP_05569144.1| pseudouridylate synthase [Enterococcus faecalis HIP11704]
gi|256955469|gb|EEU72101.1| pseudouridylate synthase [Enterococcus faecalis HIP11704]
gi|295113102|emb|CBL31739.1| ribosomal large subunit pseudouridine synthase D [Enterococcus sp.
7L76]
Length = 301
Score = 146 bits (369), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 45 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGH 104
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 105 PNGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 140
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 141 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 200
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 201 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 233
>gi|312903470|ref|ZP_07762650.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0635]
gi|422689213|ref|ZP_16747325.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0630]
gi|310633346|gb|EFQ16629.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0635]
gi|315577834|gb|EFU90025.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX0630]
Length = 310
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 54 ETVRANYKVTAGDEIVVTIPEPEVLDMIAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGH 113
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 114 PKGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 149
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 150 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 209
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 210 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 242
>gi|22299081|ref|NP_682328.1| ribosomal large subunit pseudouridine synthase D
[Thermosynechococcus elongatus BP-1]
gi|22295263|dbj|BAC09090.1| ribosomal large subunit pseudouridine synthase D
[Thermosynechococcus elongatus BP-1]
Length = 308
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 30/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+ GG+++ + +PL E +PL I+YED+ +L++NKP +VVHPAPG++ GTLV+G
Sbjct: 55 LSGGEVLEVVLPTPEPLDLVPEPLPLSILYEDEELLILNKPVDLVVHPAPGHSHGTLVHG 114
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC P L + I G RPGIVHRLDK TSG++VVAK
Sbjct: 115 LLAHC--PDL---------------------TGIGGVQ-RPGIVHRLDKDTSGVMVVAKT 150
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E + HL +Q K ++R Y+ + G P + G + P+ R P +R +MA +P +
Sbjct: 151 EFALHHLQQQLKTRQMQRHYLGVVYGQPREDRGTVITPLGRHPVDRKKMAVVPPE----K 206
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + + V E ALVE+RLETGRTHQ
Sbjct: 207 GRTAITHWYVKERFR--HCALVEFRLETGRTHQ 237
>gi|347761723|ref|YP_004869284.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Gluconacetobacter xylinus NBRC 3288]
gi|347580693|dbj|BAK84914.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Gluconacetobacter xylinus NBRC 3288]
Length = 323
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 116/213 (54%), Gaps = 28/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ G I P + +DI LDI+YED +++V++KPA MVVHPAPGN GTLVN
Sbjct: 60 VRAGMCYEIHIPPAIPTTPQGQDIALDILYEDRDLIVLDKPAGMVVHPAPGNEDGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC S + G RPGIVHRLDK TSG++V AK
Sbjct: 120 LLAHCG-----------------------DSLTGIGGERRPGIVHRLDKDTSGIMVAAKT 156
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E +H LS F ++R Y ++ G+P+ + G + I RD +R RMA I +G
Sbjct: 157 EMAHQALSLAFAERRMDRAYQAICWGIPTPAQGSFDGAIGRDRRDRKRMAVI----ANGG 212
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HA + Y+++E GG A VE +L TGRTHQ
Sbjct: 213 GKHALTHYRILETFH-GGLAHVECKLATGRTHQ 244
>gi|160947739|ref|ZP_02094906.1| hypothetical protein PEPMIC_01674 [Parvimonas micra ATCC 33270]
gi|158446873|gb|EDP23868.1| pseudouridine synthase, RluA family [Parvimonas micra ATCC 33270]
Length = 310
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 119/210 (56%), Gaps = 33/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + +I + + + AEDI LDIVYEDD ++++NKP +MVVHPA GN TLVN +L+
Sbjct: 55 GDEITVSIPDKKEITLVAEDIDLDIVYEDDYIIIINKPRNMVVHPAVGNEKHTLVNALLN 114
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC L + S RPGIVHRLDK T+GL++ AKD+ +
Sbjct: 115 HCKLSMINSE--------------------------RPGIVHRLDKDTTGLIICAKDDET 148
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L E F I + Y+++ +G S+ +G I+ PI RD +R +M+ +K G+A
Sbjct: 149 HLKLVEMFANREINKKYLAICNGSFSKENGLIDKPIGRDEKDRKKMSV---KSKSGKA-- 203
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y V +++ +LV+ L TGRTHQ
Sbjct: 204 AITEYNV--LISNLKYSLVDVTLHTGRTHQ 231
>gi|227553528|ref|ZP_03983577.1| pseudouridylate synthase [Enterococcus faecalis HH22]
gi|255972642|ref|ZP_05423228.1| pseudouridylate synthase [Enterococcus faecalis T1]
gi|255975694|ref|ZP_05426280.1| pseudouridylate synthase [Enterococcus faecalis T2]
gi|256762651|ref|ZP_05503231.1| pseudouridylate synthase [Enterococcus faecalis T3]
gi|256961775|ref|ZP_05565946.1| pseudouridylate synthase [Enterococcus faecalis Merz96]
gi|257079163|ref|ZP_05573524.1| pseudouridylate synthase [Enterococcus faecalis JH1]
gi|257085033|ref|ZP_05579394.1| pseudouridylate synthase [Enterococcus faecalis Fly1]
gi|257419447|ref|ZP_05596441.1| pseudouridylate synthase [Enterococcus faecalis T11]
gi|257422461|ref|ZP_05599451.1| pseudouridylate synthase [Enterococcus faecalis X98]
gi|294779380|ref|ZP_06744781.1| pseudouridine synthase, RluA family [Enterococcus faecalis PC1.1]
gi|384518748|ref|YP_005706053.1| RluA family pseudouridine synthase [Enterococcus faecalis 62]
gi|397700031|ref|YP_006537819.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
D32]
gi|430361833|ref|ZP_19426910.1| pseudouridylate synthase [Enterococcus faecalis OG1X]
gi|430368433|ref|ZP_19428174.1| pseudouridylate synthase [Enterococcus faecalis M7]
gi|227177333|gb|EEI58305.1| pseudouridylate synthase [Enterococcus faecalis HH22]
gi|255963660|gb|EET96136.1| pseudouridylate synthase [Enterococcus faecalis T1]
gi|255968566|gb|EET99188.1| pseudouridylate synthase [Enterococcus faecalis T2]
gi|256683902|gb|EEU23597.1| pseudouridylate synthase [Enterococcus faecalis T3]
gi|256952271|gb|EEU68903.1| pseudouridylate synthase [Enterococcus faecalis Merz96]
gi|256987193|gb|EEU74495.1| pseudouridylate synthase [Enterococcus faecalis JH1]
gi|256993063|gb|EEU80365.1| pseudouridylate synthase [Enterococcus faecalis Fly1]
gi|257161275|gb|EEU91235.1| pseudouridylate synthase [Enterococcus faecalis T11]
gi|257164285|gb|EEU94245.1| pseudouridylate synthase [Enterococcus faecalis X98]
gi|294453509|gb|EFG21910.1| pseudouridine synthase, RluA family [Enterococcus faecalis PC1.1]
gi|323480881|gb|ADX80320.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
62]
gi|397336670|gb|AFO44342.1| pseudouridine synthase, RluA family protein [Enterococcus faecalis
D32]
gi|429512386|gb|ELA01994.1| pseudouridylate synthase [Enterococcus faecalis OG1X]
gi|429516189|gb|ELA05683.1| pseudouridylate synthase [Enterococcus faecalis M7]
Length = 301
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 45 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGH 104
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 105 PKGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 140
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 141 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 200
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 201 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 233
>gi|406670780|ref|ZP_11078025.1| RluA family pseudouridine synthase [Facklamia hominis CCUG 36813]
gi|405582296|gb|EKB56302.1| RluA family pseudouridine synthase [Facklamia hominis CCUG 36813]
Length = 321
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 116/193 (60%), Gaps = 31/193 (16%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 108
AED+PLDIVYEDD +LV+NKPA MVVHP+ G+ GTLVNG+L++ + LA +
Sbjct: 80 AEDLPLDIVYEDDCLLVINKPAGMVVHPSKGHPRGTLVNGLLYYLN-GQLAQGS------ 132
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
A+ RPGIVHR+DK TSGLLVVAK + +H LS+Q H++ R Y
Sbjct: 133 ----------------AAYRPGIVHRIDKDTSGLLVVAKTDQAHQALSQQLGDHSLARTY 176
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
+++ G +S G I +P+ RDP NR+R + Q + A + ++V+ + G +
Sbjct: 177 LAVVHGQVKESEGEIHLPLKRDPKNRLRW------HVDAQGKEAWTDFRVLAV--GEYYS 228
Query: 229 LVEWRLETGRTHQ 241
L+ +L TGRTHQ
Sbjct: 229 LLSLKLHTGRTHQ 241
>gi|302386409|ref|YP_003822231.1| RluA family pseudouridine synthase [Clostridium saccharolyticum
WM1]
gi|302197037|gb|ADL04608.1| pseudouridine synthase, RluA family [Clostridium saccharolyticum
WM1]
Length = 304
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 125/218 (57%), Gaps = 34/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD ++ E + + EDIPL+I+YED +++++NKP MVVHPA G+ +GTL
Sbjct: 51 NYKVNAGDRISVFFPESKEPEIQPEDIPLNIIYEDKDIILINKPKGMVVHPAAGHYSGTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLL 143
VNG++ HC S +SG + +RPGIVHR+D T+G+L
Sbjct: 111 VNGLMSHC-------------------------RSELSGINGVMRPGIVHRIDMDTTGVL 145
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+V K++ +H+ +SEQ K H+I R Y ++ GV + G + PI R P +R +M+ +
Sbjct: 146 IVCKNDMAHSSISEQLKEHSITRKYAAIVHGVLKEDEGTVNAPIGRHPVDRKKMSI---N 202
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K+G R A + Y+V+E +E +LETGRTHQ
Sbjct: 203 EKNG--REAVTHYRVLERFK--QFTYIECQLETGRTHQ 236
>gi|423329049|ref|ZP_17306856.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
3837]
gi|404603449|gb|EKB03103.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
3837]
Length = 351
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 123/229 (53%), Gaps = 35/229 (15%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAE---AEDIPLDIVYEDDNVLVVNKPAHM 72
+F++ + +H VK D+V + QP E+IPLDIVYEDD++LVVNKPA +
Sbjct: 58 IFVNDIPVKSNHKVKANDVVRVLMK--QPPFENIIIPENIPLDIVYEDDSLLVVNKPAGL 115
Query: 73 VVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 132
VVHP GN TGTLVN + +H L SS RPG+V
Sbjct: 116 VVHPGHGNYTGTLVNALAYHFENLPLNSSE-------------------------RPGLV 150
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
HR+DK TSGLLVVAK E + L +QF T ER Y+++ G + G IE I R
Sbjct: 151 HRIDKDTSGLLVVAKTEWAMTELQKQFAEKTSEREYVAMVWGNVEEDEGTIESYIGRHVK 210
Query: 193 NRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R++MAA + + A + YKV+E L G LV RLETGRTHQ
Sbjct: 211 DRMQMAAF---DDESMGKWAVTHYKVLERL--GYVTLVSCRLETGRTHQ 254
>gi|373108543|ref|ZP_09522825.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
10230]
gi|423129788|ref|ZP_17117463.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
12901]
gi|371646660|gb|EHO12171.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
10230]
gi|371647811|gb|EHO13306.1| RluA family pseudouridine synthase [Myroides odoratimimus CCUG
12901]
Length = 351
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 124/229 (54%), Gaps = 35/229 (15%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAE---AEDIPLDIVYEDDNVLVVNKPAHM 72
+F++ + +H VK D+V + QP E+IPLDIVYEDD++LVVNKPA +
Sbjct: 58 IFVNDIPVKSNHKVKANDVVRVLMK--QPPFENIIIPENIPLDIVYEDDSLLVVNKPAGL 115
Query: 73 VVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 132
VVHP GN TGTLVN + +H F + +S RPG+V
Sbjct: 116 VVHPGHGNYTGTLVNALAYH-------------------------FENLPLNSSERPGLV 150
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
HR+DK TSGLLVVAK E + L +QF T ER Y+++ G + G IE I R
Sbjct: 151 HRIDKDTSGLLVVAKTEWAMTELQKQFAEKTSEREYVAMVWGNVEEDEGTIESYIGRHVK 210
Query: 193 NRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R++MAA + + A + YKV+E L G LV RLETGRTHQ
Sbjct: 211 DRMQMAAF---DDESMGKWAVTHYKVLERL--GYVTLVSCRLETGRTHQ 254
>gi|390954680|ref|YP_006418438.1| ribosomal large subunit pseudouridine synthase D [Aequorivita
sublithincola DSM 14238]
gi|390420666|gb|AFL81423.1| ribosomal large subunit pseudouridine synthase D [Aequorivita
sublithincola DSM 14238]
Length = 348
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 124/218 (56%), Gaps = 31/218 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRA--EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VKG D+V + E P E++P+DIVYEDD VLVVNK A MVVHP GN +G
Sbjct: 70 NYKVKGNDVV-TVLFEHPPYEFLLVPENLPIDIVYEDDAVLVVNKAAGMVVHPGHGNYSG 128
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TL+N + +H F + + +S RPG+VHR+DK TSGLL
Sbjct: 129 TLINALTYH-------------------------FENHPNNSSNRPGLVHRIDKDTSGLL 163
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK E + HL++QF + ER Y++L G + G IE I R P NR++ + +
Sbjct: 164 VVAKTEEAMTHLAKQFFDKSTEREYVALAWGNMEEDEGTIEGNIGRHPKNRLQ-NTVYEN 222
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ + +HA + YKV+E L+ LV RLETGRTHQ
Sbjct: 223 DEEEKGKHAVTHYKVLERLS--YVTLVSCRLETGRTHQ 258
>gi|373469185|ref|ZP_09560393.1| pseudouridine synthase, RluA family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371764864|gb|EHO53230.1| pseudouridine synthase, RluA family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 303
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 134/224 (59%), Gaps = 31/224 (13%)
Query: 18 LSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPA 77
+S + ++ ++ GD V +I + +PL E+IPL+I+YEDD+V++VNKP MVVHPA
Sbjct: 44 ISGKPVKANYRLREGDSVVLSIPKPKPLEILPENIPLNILYEDDDVILVNKPKGMVVHPA 103
Query: 78 PGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDK 137
G+ + TLVN +L+HC ++ S I+G +RPGIVHR+D
Sbjct: 104 AGHYSDTLVNALLYHC----------------------KDNLSGINGV-LRPGIVHRIDM 140
Query: 138 GTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRM 197
T+G+++V K++ +H H++EQ H+I R Y+++ +G + G I+ I+R ++R +M
Sbjct: 141 DTTGVIIVCKNDMAHQHIAEQLANHSITRKYVAIVTGNIKEDEGVIDAAIARSKSDRKKM 200
Query: 198 AAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A +++G + A + YKV+E L G +E LETGRTHQ
Sbjct: 201 AV----DENG--KRAVTHYKVLERL--NGYTYIECVLETGRTHQ 236
>gi|257090036|ref|ZP_05584397.1| pseudouridylate synthase [Enterococcus faecalis CH188]
gi|256998848|gb|EEU85368.1| pseudouridylate synthase [Enterococcus faecalis CH188]
Length = 301
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 45 ETVRANYKVTAGDEIVVTIPEPEVLDMIAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGH 104
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 105 PKGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 140
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 141 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 200
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 201 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 233
>gi|86144060|ref|ZP_01062398.1| ribosomal large subunit pseudouridine synthase D [Leeuwenhoekiella
blandensis MED217]
gi|85829520|gb|EAQ47984.1| ribosomal large subunit pseudouridine synthase D [Leeuwenhoekiella
blandensis MED217]
Length = 344
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 119/218 (54%), Gaps = 33/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRA--EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
+H VK D+V + E P EDIPLDIV+EDD +LVVNKPA MVVHP GN +G
Sbjct: 68 NHKVKANDVVRV-LFEHPPYEFLLTPEDIPLDIVFEDDTLLVVNKPAGMVVHPGHGNYSG 126
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TL+N +++H F + +S RPG+VHR+DK TSGLL
Sbjct: 127 TLINALIYH-------------------------FDNLPENSSGRPGLVHRIDKDTSGLL 161
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK E + HL++QF T ER YI++ G + G +E I R P NR++
Sbjct: 162 VVAKTEEAMTHLAKQFFDKTSEREYIAIVWGNVEEDQGTVEGHIGRHPKNRMQNTVYEDG 221
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ Q + A + YKV+E L G + +LETGRTHQ
Sbjct: 222 D---QGKEAVTHYKVLERL--GYVTKISCKLETGRTHQ 254
>gi|424896721|ref|ZP_18320295.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393180948|gb|EJC80987.1| pseudouridine synthase, RluA family [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 341
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 138/251 (54%), Gaps = 41/251 (16%)
Query: 7 EFNQVSVLAL------FLSMDKLS-VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE 59
EF++ + AL FL + ++ V+ GD T+ E + + EDIPLDI++E
Sbjct: 36 EFSRSRIKALIKDGQVFLRGEPVTDPQRKVRNGDSFEITLPEPEDPTPQGEDIPLDILHE 95
Query: 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFS 119
D++V+V++KP+ +VVHP GN TGTLVN +++HC +
Sbjct: 96 DEDVIVISKPSGLVVHPGAGNWTGTLVNALIYHCG----------------------DTL 133
Query: 120 SSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----TIERVYISLTSGV 175
S I G RPGIVHRLDK T+G++VVAK++ +H HLS QF H +ER Y ++ G
Sbjct: 134 SGIGGVR-RPGIVHRLDKDTTGVMVVAKNDIAHRHLSLQFADHGRTMPLERAYQAVVWGR 192
Query: 176 PSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL-----AGGGSALV 230
P +G ++ P+ RD +R R A+ + H A A + Y+VIE A ++LV
Sbjct: 193 PRSLTGTVDAPLGRDTGDRTRR-AVKRPDSH-DADEAITHYQVIERFQEKPDATALASLV 250
Query: 231 EWRLETGRTHQ 241
E LETGRTHQ
Sbjct: 251 ECHLETGRTHQ 261
>gi|423133444|ref|ZP_17121091.1| RluA family pseudouridine synthase [Myroides odoratimimus CIP
101113]
gi|371648708|gb|EHO14195.1| RluA family pseudouridine synthase [Myroides odoratimimus CIP
101113]
Length = 351
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 124/229 (54%), Gaps = 35/229 (15%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAE---AEDIPLDIVYEDDNVLVVNKPAHM 72
+F++ + +H VK D+V + QP E+IPLDIVYEDD++LVVNKPA +
Sbjct: 58 IFVNDIPVKSNHKVKANDVVRVLMK--QPPFENIIIPENIPLDIVYEDDSLLVVNKPAGL 115
Query: 73 VVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 132
VVHP GN TGTLVN + +H F + +S RPG+V
Sbjct: 116 VVHPGHGNYTGTLVNALAYH-------------------------FENLPLNSSERPGLV 150
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
HR+DK TSGLLVVAK E + L +QF T ER Y+++ G + G IE I R
Sbjct: 151 HRIDKDTSGLLVVAKTEWAMTELQKQFAEKTSEREYVAMVWGNVEEDEGTIESYIGRHVK 210
Query: 193 NRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R++MAA + + A + YKV+E L G LV RLETGRTHQ
Sbjct: 211 DRMQMAAF---DDESMGKWAVTHYKVLERL--GYVTLVSCRLETGRTHQ 254
>gi|422721981|ref|ZP_16778558.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2137]
gi|315027878|gb|EFT39810.1| pseudouridine synthase, RluA family [Enterococcus faecalis TX2137]
Length = 310
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 54 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSVGH 113
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 114 PNGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 149
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 150 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 209
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 210 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 242
>gi|302382390|ref|YP_003818213.1| pseudouridine synthase [Brevundimonas subvibrioides ATCC 15264]
gi|302193018|gb|ADL00590.1| pseudouridine synthase, RluA family [Brevundimonas subvibrioides
ATCC 15264]
Length = 336
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 115/212 (54%), Gaps = 33/212 (15%)
Query: 36 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 95
+ T+ + A+ IPL ++YED +++V++KPA M HPAPG GTLVN +LHHC
Sbjct: 75 DITVPPVMAAEPRAQAIPLTVLYEDADLIVIDKPAGMAAHPAPGTPDGTLVNALLHHCGA 134
Query: 96 PTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHL 155
TL S I G + RPGIVHRLDK TSG++V AK + +HA L
Sbjct: 135 -TL---------------------SGIGGVA-RPGIVHRLDKDTSGVMVAAKSDRAHAGL 171
Query: 156 SEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHG------QA 209
S F H IER YI+LT G PS + GRIE I R ++R +MA + ++ QA
Sbjct: 172 SALFATHDIERTYIALTRGAPSPTLGRIETLIGRSSSDRKKMAVLKSGGRNAITDYVVQA 231
Query: 210 RHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A LA A V L+TGRTHQ
Sbjct: 232 RYAVPAKPGAAPLA----ARVACTLQTGRTHQ 259
>gi|94970372|ref|YP_592420.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Koribacter versatilis Ellin345]
gi|94552422|gb|ABF42346.1| ribosomal large subunit pseudouridine synthase D [Candidatus
Koribacter versatilis Ellin345]
Length = 333
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 127/225 (56%), Gaps = 39/225 (17%)
Query: 26 SHNVKGGDMVNCTISELQP--LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA-- 81
S+ ++G ++++ + E QP LRA EDIPLD+VYEDD++ V+NKPA M+VH G
Sbjct: 53 SYKLRGSEVIDV-VGEYQPPPLRAIPEDIPLDVVYEDDDLAVINKPAGMMVHVGAGATEE 111
Query: 82 ---TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKG 138
GTLVN +L+ A S+ G +RPGIVHRLDK
Sbjct: 112 ERNRGTLVNALLYRF----------RALSEV--------------GGDMRPGIVHRLDKE 147
Query: 139 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 198
TSGL+VVAK++ +H L+EQF + + Y++L G P + G I +PI+RD + R RM
Sbjct: 148 TSGLIVVAKNDVAHRKLAEQFSSRRVHKKYVALVHGWPKKLKGTINLPIARDMSRRTRM- 206
Query: 199 AIPGSNKHGQARHAASRYKVIEILAG--GGSALVEWRLETGRTHQ 241
+ + R A S Y+V E + G ALVE ++ETGRTHQ
Sbjct: 207 ----TTRGSGGRDALSHYEVKEKIESPYGKFALVEVKIETGRTHQ 247
>gi|254500895|ref|ZP_05113046.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
gi|222436966|gb|EEE43645.1| pseudouridine synthase, RluA family [Labrenzia alexandrii DFL-11]
Length = 341
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 121/223 (54%), Gaps = 36/223 (16%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
+ V GD + + E + + EDIPL +V+ED +V+V++KPA +VVHP GN TGTLV
Sbjct: 66 YRVNEGDEITLHLPEPEDPDPKGEDIPLSVVFEDAHVIVIDKPAGLVVHPGAGNWTGTLV 125
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N ++HHC + S I G RPGIVHR+DK TSGLLVVA
Sbjct: 126 NALIHHCG----------------------DSLSGIGGVK-RPGIVHRIDKDTSGLLVVA 162
Query: 147 KDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
K + +H L+ QF H +ER Y +L G PS G I+ ++R NR +MA +
Sbjct: 163 KTDQAHQGLAAQFADHGRTGPLERAYSALVWGAPSSLKGTIDANLARSQANRQKMAVVKT 222
Query: 203 SNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
S RHA + ++V E ++L+E RLETGRTHQ
Sbjct: 223 S-----GRHAITHWQVKERFGAADQPPLASLMECRLETGRTHQ 260
>gi|338730392|ref|YP_004659784.1| ribosomal large subunit pseudouridine synthase D [Thermotoga
thermarum DSM 5069]
gi|335364743|gb|AEH50688.1| ribosomal large subunit pseudouridine synthase D [Thermotoga
thermarum DSM 5069]
Length = 306
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 123/218 (56%), Gaps = 33/218 (15%)
Query: 26 SHNVKGGDMVNC--TISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
S+ VK GD++ EL+P+ E E I LDI+YED +++VVNKPA MVVHP P + TG
Sbjct: 50 SYKVKPGDVIFVEEPAVELKPIAVEPEPIHLDILYEDHDIIVVNKPAGMVVHPIPAHMTG 109
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+HC D + I G +RPGIVHRLDK TSG++
Sbjct: 110 TLVNALLYHCK-------------DLQGI-----------GGELRPGIVHRLDKDTSGVI 145
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK++ +H LS+QFK + ++Y +L G G I++ ++R P +RI+M
Sbjct: 146 VVAKNDLAHQSLSKQFKDRKVFKMYFALVQGCVKNDEGEIQLSLARHPVHRIKMTV---- 201
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R + + YKV++ + +V + +TGRTHQ
Sbjct: 202 --SETGRKSITLYKVLKRFKDLATLVVAYP-KTGRTHQ 236
>gi|227890823|ref|ZP_04008628.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius ATCC 11741]
gi|227867232|gb|EEJ74653.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius ATCC 11741]
Length = 301
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 124/216 (57%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V GD + E++ L E E+IPLDIVYEDD+V+VVNKP MVVHP+PG+ TL
Sbjct: 52 NYKVNLGDEITFDKPEVKKLSLEPENIPLDIVYEDDDVIVVNKPQGMVVHPSPGHFEHTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+H L S+I+G + RPGIVHR+DK TSGLL+V
Sbjct: 112 VNALLYHSPL------------------------STING-TYRPGIVHRIDKDTSGLLMV 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L++Q K T R Y++L G + SG I+ P+ R +R + A +
Sbjct: 147 AKNDMAHQSLAKQLKDKTNTREYVALVHGNIKEDSGTIDAPLGRSKVDRKKQAVVK---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V++ G LV+ LETGRTHQ
Sbjct: 203 --DGRNAVTHFEVLK--RYGDYTLVKCVLETGRTHQ 234
>gi|399992104|ref|YP_006572344.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398656659|gb|AFO90625.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 344
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 39/248 (15%)
Query: 6 LEFNQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 65
+E Q+ V +S K V G ++ TI E + EDIPL+++YEDD+++V
Sbjct: 41 IEAGQLQVNGTVVSDAKAKVDE----GALIEITIEEAEDSHIGPEDIPLEVIYEDDDLIV 96
Query: 66 VNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGA 125
+NKP MVVHPAPG +GTLVN +LHHC + S + G
Sbjct: 97 INKPTGMVVHPAPGTPSGTLVNALLHHCG----------------------DNLSGVGGV 134
Query: 126 SIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE- 184
RPGIVHR+DK TSGLLVVAK + +H L+ QF+ HT+ER Y ++ GVP + R+
Sbjct: 135 K-RPGIVHRIDKETSGLLVVAKSDVAHQGLAAQFEKHTVERYYRAICYGVPDANDPRLRG 193
Query: 185 -VPISRDPNNRIRMA---AIPGSNKHGQA------RHAASRYKVIEILAGGG-SALVEWR 233
S +P N +++ A +++ QA RHA +R ++++ AL+E
Sbjct: 194 VKGTSFEPGNILKLTTQLARHKTDRQRQAVLFQGGRHAITRARIVDSFGTPPVVALIECW 253
Query: 234 LETGRTHQ 241
LETGRTHQ
Sbjct: 254 LETGRTHQ 261
>gi|400753763|ref|YP_006562131.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis 2.10]
gi|398652916|gb|AFO86886.1| ribosomal large subunit pseudouridine synthase D [Phaeobacter
gallaeciensis 2.10]
Length = 344
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 94/248 (37%), Positives = 134/248 (54%), Gaps = 39/248 (15%)
Query: 6 LEFNQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLV 65
+E Q+ V +S K V G ++ TI E + EDIPL+++YEDD+++V
Sbjct: 41 IEAGQLQVNGTVVSDAKAKVDE----GALIEITIEEAEDSHIGPEDIPLEVIYEDDDLIV 96
Query: 66 VNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGA 125
+NKP MVVHPAPG +GTLVN +LHHC + S + G
Sbjct: 97 INKPTGMVVHPAPGTPSGTLVNALLHHCG----------------------DNLSGVGGV 134
Query: 126 SIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE- 184
RPGIVHR+DK TSGLLVVAK + +H L+ QF+ HT+ER Y ++ GVP + R+
Sbjct: 135 K-RPGIVHRIDKETSGLLVVAKSDVAHQGLAAQFEKHTVERYYRAICYGVPDANDPRLRG 193
Query: 185 -VPISRDPNNRIRMA---AIPGSNKHGQA------RHAASRYKVIEILAGGG-SALVEWR 233
S +P N +++ A +++ QA RHA +R ++++ AL+E
Sbjct: 194 VKGTSFEPGNILKLTTQLARHKTDRQRQAVLFQGGRHAITRARIVDSFGTPPVVALIECW 253
Query: 234 LETGRTHQ 241
LETGRTHQ
Sbjct: 254 LETGRTHQ 261
>gi|121533717|ref|ZP_01665544.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
gi|121307708|gb|EAX48623.1| pseudouridine synthase, RluA family [Thermosinus carboxydivorans
Nor1]
Length = 309
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 121/216 (56%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ + D V + E +P +AE I LDI+YED++++V+NKP MVVHPA GN GTL
Sbjct: 57 NYKLAPADYVTIRLPEPKPAEIKAEAISLDILYEDEDIIVINKPRGMVVHPAAGNYEGTL 116
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC + S I+G S RPGIVHRLDK TSG+++V
Sbjct: 117 VNALLRHC-----------------------DRLSGINGVS-RPGIVHRLDKDTSGVMMV 152
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + +H L+ Q K T R Y+++ G ++ G I PI R P +R +MA + ++K
Sbjct: 153 AKTDRAHLDLARQIKERTAGRKYVAIVHGNIKENQGIINAPIGRHPTDRKKMAVVFTNSK 212
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + ++V+E G LVE RL TGRTHQ
Sbjct: 213 -----EAITTFQVLERF--GDYTLVECRLFTGRTHQ 241
>gi|343520975|ref|ZP_08757943.1| pseudouridine synthase, RluA family [Parvimonas sp. oral taxon 393
str. F0440]
gi|343396181|gb|EGV08718.1| pseudouridine synthase, RluA family [Parvimonas sp. oral taxon 393
str. F0440]
Length = 310
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 115/210 (54%), Gaps = 33/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + +I E + + AEDI LDIVYEDD ++++NKP +MVVHPA GN TLVN +L+
Sbjct: 55 GDEITVSIPEKKEITLVAEDIDLDIVYEDDYIIIINKPRNMVVHPAVGNEEHTLVNALLN 114
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC L + S RPGIVHRLDK T+GL++ AKD+ +
Sbjct: 115 HCKLSMINSE--------------------------RPGIVHRLDKDTTGLIICAKDDET 148
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L E F I + Y+++ +G S+ +G I+ PI RD +R +M+ K +
Sbjct: 149 HLKLVEMFANREINKKYLAICNGSFSKENGFIDKPIGRDEKDRKKMSV-----KSKSGKE 203
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y ++ + +LV+ L TGRTHQ
Sbjct: 204 ALTEYNILT--SNLKFSLVDVTLHTGRTHQ 231
>gi|90961803|ref|YP_535719.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius UCC118]
gi|385840423|ref|YP_005863747.1| Pseudouridine synthase [Lactobacillus salivarius CECT 5713]
gi|90820997|gb|ABD99636.1| Ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius UCC118]
gi|300214544|gb|ADJ78960.1| Pseudouridine synthase [Lactobacillus salivarius CECT 5713]
Length = 298
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 33/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
D ++ V GD + E++ L E E+IPLDIVYEDD+V+VVNKP MVVHP+PG+
Sbjct: 44 DVKKANYKVNLGDEITFDKPEVKKLSLEPENIPLDIVYEDDDVIVVNKPQGMVVHPSPGH 103
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TLVN +L+H L S+I+G + RPGIVHR+DK TS
Sbjct: 104 FEHTLVNALLYHSPL------------------------STING-TYRPGIVHRIDKDTS 138
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L G + SG I+ P+ R +R + A +
Sbjct: 139 GLLMVAKNDMAHQSLAKQLKDKTNTREYVALVHGNIKEDSGTIDAPLGRSKVDRKKQAVV 198
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V++ G LV+ LETGRTHQ
Sbjct: 199 K------DGRNAVTHFEVLKRY--GDYTLVKCVLETGRTHQ 231
>gi|418961352|ref|ZP_13513239.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius SMXD51]
gi|380345019|gb|EIA33365.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius SMXD51]
Length = 298
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 33/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
D ++ V GD + E++ L E E+IPLDIVYEDD+V+VVNKP MVVHP+PG+
Sbjct: 44 DVKKANYKVNLGDEITFDKPEVKKLSLEPENIPLDIVYEDDDVIVVNKPQGMVVHPSPGH 103
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TLVN +L+H L S+I+G + RPGIVHR+DK TS
Sbjct: 104 FEHTLVNALLYHSPL------------------------STING-TYRPGIVHRIDKDTS 138
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L G + SG I+ P+ R +R + A +
Sbjct: 139 GLLMVAKNDMAHQSLAKQLKDKTNTREYVALVHGNIKEDSGTIDAPLGRSKVDRKKQAVV 198
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V++ G LV+ LETGRTHQ
Sbjct: 199 K------DGRNAVTHFEVLKRY--GDYTLVKCVLETGRTHQ 231
>gi|417788320|ref|ZP_12436003.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius NIAS840]
gi|334308497|gb|EGL99483.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius NIAS840]
Length = 298
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 33/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
D ++ V GD + E++ L E E+IPLDIVYEDD+V+VVNKP MVVHP+PG+
Sbjct: 44 DVKKANYKVNLGDEITFDKPEVKKLSLEPENIPLDIVYEDDDVIVVNKPQGMVVHPSPGH 103
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TLVN +L+H L S+I+G + RPGIVHR+DK TS
Sbjct: 104 FEHTLVNALLYHSPL------------------------STING-TYRPGIVHRIDKDTS 138
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L G + SG I+ P+ R +R + A +
Sbjct: 139 GLLMVAKNDMAHQSLAKQLKDKTNTREYVALVHGNIKEDSGTIDAPLGRSKVDRKKQAVV 198
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V++ G LV+ LETGRTHQ
Sbjct: 199 K------DGRNAVTHFEVLKRY--GDYTLVKCVLETGRTHQ 231
>gi|333897289|ref|YP_004471163.1| RluA family pseudouridine synthase [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112554|gb|AEF17491.1| pseudouridine synthase, RluA family [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 306
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ GD++N I E + + + E+IPLDI+YEDD+++VVNKP MVVHPAPGN +GTL
Sbjct: 54 NYKVREGDVINLNIPEAEEIDLKPENIPLDIIYEDDDIIVVNKPQGMVVHPAPGNLSGTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC+ L+ N E +RPGIVHRLDK TSG++VV
Sbjct: 114 VNALLYHCT--NLSGINGE----------------------LRPGIVHRLDKDTSGVMVV 149
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K TI + Y+++ GV G +E PI RD R +MA +
Sbjct: 150 AKNDKAHLELSNQIKNRTILKKYLAIVEGVIKNDEGAVEAPIGRDHIERKKMAVVK---- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + Y+V+E ++LVE ++TGRTHQ
Sbjct: 206 --DGRYALTLYRVLERYK--NNSLVEAIIKTGRTHQ 237
>gi|257087008|ref|ZP_05581369.1| pseudouridylate synthase [Enterococcus faecalis D6]
gi|256995038|gb|EEU82340.1| pseudouridylate synthase [Enterococcus faecalis D6]
Length = 301
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 45 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSVGH 104
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 105 PNGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 140
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 141 GLLMVAKNDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 200
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 201 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 233
>gi|116618468|ref|YP_818839.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097315|gb|ABJ62466.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 312
Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 134/227 (59%), Gaps = 33/227 (14%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+ ++ K+ S+ V GD ++ T E Q + EAE+IPLDI+YEDD+++VVNKP MVV
Sbjct: 40 TILVNNHKVKRSYKVVSGDTISITPPETQETKIEAENIPLDIIYEDDDIIVVNKPQGMVV 99
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPA G+++GTLVN +LHH L T+ + EF RPGIVHR
Sbjct: 100 HPAAGHSSGTLVNALLHHSPLSTI----------------NGEF---------RPGIVHR 134
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+D+ TSGLL+VAK++ +H LSEQ K H +RVY +L G ++ SG IE PI R +R
Sbjct: 135 IDRDTSGLLMVAKNDKAHRSLSEQLKSHKNQRVYYALVRGEFTEDSGTIEAPIGRHKIDR 194
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A I G R A + ++V++ G L++ LETGRTHQ
Sbjct: 195 KKQAVIEG------GREAVTHFRVLKRYV--GYTLLKVSLETGRTHQ 233
>gi|375090784|ref|ZP_09737096.1| RluA family pseudouridine synthase [Facklamia languida CCUG 37842]
gi|374564946|gb|EHR36225.1| RluA family pseudouridine synthase [Facklamia languida CCUG 37842]
Length = 313
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 124/197 (62%), Gaps = 31/197 (15%)
Query: 45 LRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQE 104
L + E +PL+IVYEDD++LVVNKPA +VVHPA G+ATGTLVNG++++ L SS +
Sbjct: 75 LDLQGEAMPLEIVYEDDDLLVVNKPAGLVVHPAKGHATGTLVNGLIYY--LKGQLSSGSQ 132
Query: 105 AFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTI 164
A+ RPGIVHR+DK TSGLLVVAK++ +H LS+Q + +
Sbjct: 133 AY---------------------RPGIVHRIDKDTSGLLVVAKNDAAHQALSQQLQTRQL 171
Query: 165 ERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAG 224
+R Y++L +G SG+I++ + RDP NR+R ++ G + A + +KV++
Sbjct: 172 KRTYLALVNGSVQVDSGQIDMALKRDPKNRLRWQV----DETG--KEAITDFKVLQRWP- 224
Query: 225 GGSALVEWRLETGRTHQ 241
++LVE +L+TGRTHQ
Sbjct: 225 -VASLVEAQLQTGRTHQ 240
>gi|451343617|ref|ZP_21912688.1| RluA family pseudouridine synthase [Eggerthia catenaformis OT 569 =
DSM 20559]
gi|449337714|gb|EMD16871.1| RluA family pseudouridine synthase [Eggerthia catenaformis OT 569 =
DSM 20559]
Length = 302
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 130/229 (56%), Gaps = 35/229 (15%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHM 72
+F++ S+ V+ GD + + +P+ + EDIPLDIVYED +V+VVNKP+ M
Sbjct: 41 CVFVNDKNEKSSYKVQPGDYIR--VEYPKPVNTDILPEDIPLDIVYEDKDVIVVNKPSGM 98
Query: 73 VVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 132
+VHP+ G +GTLVN +L+HC D+S +I+G + RPGIV
Sbjct: 99 IVHPSSGIYSGTLVNALLYHC----------------HDLS-------AINGVT-RPGIV 134
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPN 192
HR+DK TSGL++ AK++ SH LS+Q + HT+ R YI+L G + GRI PI RD
Sbjct: 135 HRIDKETSGLIMAAKNDLSHQSLSKQLEEHTVIRRYIALVHGEIPHTKGRIVAPIGRDQR 194
Query: 193 NRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R +M + K A + + V+E LVE RLETGRTHQ
Sbjct: 195 DRQKMNVTSHNGK-----EAITNFTVLERFK--NMTLVECRLETGRTHQ 236
>gi|315651411|ref|ZP_07904436.1| ribosomal large subunit pseudouridine synthase D
[Lachnoanaerobaculum saburreum DSM 3986]
gi|315486370|gb|EFU76727.1| ribosomal large subunit pseudouridine synthase D
[Lachnoanaerobaculum saburreum DSM 3986]
Length = 303
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 35/221 (15%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ +K G+ V I + +PL E+IP+DI+YED++V++VNKP MVVHPA G+
Sbjct: 49 IKANYRLKEGECVVLDIPKPEPLEIVPENIPIDILYEDEDVILVNKPKGMVVHPAAGHYK 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTS 140
GTLVN +L+HC S++SG + +RPGIVHR+D T+
Sbjct: 109 GTLVNALLYHC-------------------------KSNLSGINGVLRPGIVHRIDMDTT 143
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
G++++ K++ +H H+++Q H+I R Y+++ +G + G I+ I+R ++R +MA
Sbjct: 144 GVIIICKNDIAHQHIAKQLANHSITRKYVAIVTGNIKEDEGVIDAAIARSKSDRKKMAV- 202
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+K G + A + YKV+E L G +E LETGRTHQ
Sbjct: 203 ---DKDG--KRAVTHYKVLERL--NGYTYIECVLETGRTHQ 236
>gi|217968192|ref|YP_002353698.1| RluA family pseudouridine synthase [Dictyoglomus turgidum DSM 6724]
gi|217337291|gb|ACK43084.1| pseudouridine synthase, RluA family [Dictyoglomus turgidum DSM
6724]
Length = 303
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 120/216 (55%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK GD + I + +DIP++IVYED++++++NKP MVVHPA G+ TL
Sbjct: 51 SYKVKLGDRIEVIIPPPVETEVKPQDIPIEIVYEDEDMVIINKPKGMVVHPAHGHYNDTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+ +D+S G +RPGI+HRLDK T+GLL++
Sbjct: 111 VNALLYRV----------------KDLSG--------IGGELRPGIIHRLDKDTTGLLII 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH LSEQ K T+ R Y +L G RIE PI R P NR +MA +P
Sbjct: 147 AKNDLSHQKLSEQLKNRTLRRTYWALCEGEIPWEEKRIEAPIGRHPINRKKMAIVP---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+G+ A + +KV+E G L+ LETGRTHQ
Sbjct: 203 YGKI--AITNFKVLERFK--GYTLISADLETGRTHQ 234
>gi|392376177|ref|YP_003208010.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Methylomirabilis oxyfera]
gi|258593870|emb|CBE70211.1| pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)
[Candidatus Methylomirabilis oxyfera]
Length = 314
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 120/210 (57%), Gaps = 31/210 (14%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G ++ +I QP E IPLDI+YED ++LV+NKPA +VVHPAPG+ +GTLV+ IL+
Sbjct: 60 GQQISLSIPPPQPSTLTPEPIPLDILYEDTDMLVLNKPAGLVVHPAPGHHSGTLVHAILY 119
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC P L +E RPGIVHRLDK TSG++VVAK + +
Sbjct: 120 HC--PDLPGIGEER----------------------RPGIVHRLDKETSGVMVVAKTDTA 155
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
A L+ QFK +++ YI+L G Q G+I I R +R RMA + + R
Sbjct: 156 MASLATQFKGRRVQKTYIALVHGEVKQPQGQIAADIGRHERDRKRMAV-----RTRKGRE 210
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y+VI+ L GG L+E + +TGRTHQ
Sbjct: 211 AVTNYRVIKRL--GGLTLLELQPQTGRTHQ 238
>gi|254467318|ref|ZP_05080729.1| ribosomal large subunit pseudouridine synthase D [Rhodobacterales
bacterium Y4I]
gi|206688226|gb|EDZ48708.1| ribosomal large subunit pseudouridine synthase D [Rhodobacterales
bacterium Y4I]
Length = 341
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 128/228 (56%), Gaps = 39/228 (17%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
NV G ++ + E + EDIPL+IV+EDD+++V+NKPA MVVHPAPG+ +GTLVN
Sbjct: 59 NVAAGAVIAIEVEEAEDSHIGPEDIPLEIVFEDDDLIVINKPAGMVVHPAPGSPSGTLVN 118
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVV 145
+LHH F ++SG RPGIVHR+DK TSGLLVV
Sbjct: 119 ALLHH-------------------------FGGNLSGVGGVKRPGIVHRIDKETSGLLVV 153
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AI 200
AK + +H L+ QF+ HT+ER Y ++ GVP + R+ S +P N +++ A
Sbjct: 154 AKSDAAHQGLAAQFEKHTVERYYQAICYGVPDGNDPRLRGVKGASFEPGNILKLTTHLAR 213
Query: 201 PGSNKHGQA------RHAASRYKVIEILAG-GGSALVEWRLETGRTHQ 241
+++ QA RHA +R ++ E +AL+E LETGRTHQ
Sbjct: 214 HKTDRQRQAVLFQGGRHAVTRARICESFGNPPCAALIECWLETGRTHQ 261
>gi|433446181|ref|ZP_20410240.1| pseudouridine synthase, RluA family protein [Anoxybacillus
flavithermus TNO-09.006]
gi|432000477|gb|ELK21371.1| pseudouridine synthase, RluA family protein [Anoxybacillus
flavithermus TNO-09.006]
Length = 303
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 118/209 (56%), Gaps = 32/209 (15%)
Query: 33 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 92
D V +I + +PL E E IPLDI YED +VLVVNKP MVVHPAPG+ GTLVN +L H
Sbjct: 59 DEVVISIPDPEPLDVEPEPIPLDIYYEDADVLVVNKPRGMVVHPAPGHMHGTLVNALLAH 118
Query: 93 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSH 152
C +D+ S I+G +RPGIVHR+DK TSGLL++AK++ +H
Sbjct: 119 C----------------QDL-------SGINGV-LRPGIVHRIDKDTSGLLMIAKNDLAH 154
Query: 153 AHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHA 212
L Q T+ R Y+++ GV G I+ PI RDP +R MA + + A
Sbjct: 155 ESLVNQLVNKTVTRKYVAIVHGVIPHDYGTIDAPIGRDPRDRQSMAVV------ENGKEA 208
Query: 213 ASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ ++V+E +E +LETGRTHQ
Sbjct: 209 VTHFRVLERFE--HYTFLECQLETGRTHQ 235
>gi|195978250|ref|YP_002123494.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|195974955|gb|ACG62481.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
equi subsp. zooepidemicus MGCS10565]
Length = 296
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 125/213 (58%), Gaps = 32/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ GD ++ I E L +A+DIPLDIVY+DD ++++NKP MVVHP+ G++TGTLVN
Sbjct: 49 VQVGDCISYHIPEESSLDYQAQDIPLDIVYQDDVLVIINKPQGMVVHPSAGHSTGTLVNA 108
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L+H +D+ SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 109 LLYHV----------------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMVAKT 144
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L+++ K R Y+++ G + G IE PI R +R + +
Sbjct: 145 DKAHQLLADELKAKKSLRKYVAIVHGNLPKDRGVIEAPIGRSDKDRKKQTVT------AK 198
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A +R+KV+E G +LVE +LETGRTHQ
Sbjct: 199 GKEALTRFKVLERF--GRYSLVELQLETGRTHQ 229
>gi|331091117|ref|ZP_08339959.1| hypothetical protein HMPREF9477_00602 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405339|gb|EGG84875.1| hypothetical protein HMPREF9477_00602 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 307
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 32/226 (14%)
Query: 18 LSMDKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+S++ ++V N K D+V TI +L E+IPLDI+YED ++L+VNKP MVVH
Sbjct: 42 ISVNGMAVKANYKVSANDIVQLTIPDLSEPDILPENIPLDILYEDADILIVNKPKGMVVH 101
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
P+P + TGTLVN ++++C DD S I+G +RPGIVHR+
Sbjct: 102 PSPSHYTGTLVNALMYYC-------------------KDD---LSGINGV-MRPGIVHRI 138
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
D T+G L+V K++ +H L+E K+H I+R+Y ++ GV + G +E PI R P +R
Sbjct: 139 DMDTTGSLLVCKNDFAHQKLAEDLKVHNIKRIYHAIVHGVIKEDEGTVEGPIGRHPIDRK 198
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+M S + + A + Y+V++ + +E +LETGRTHQ
Sbjct: 199 KM-----SINYKNGKPAVTHYRVLKRFS--NYTYIECQLETGRTHQ 237
>gi|329766891|ref|ZP_08258419.1| hypothetical protein HMPREF0428_00116 [Gemella haemolysans M341]
gi|328837616|gb|EGF87241.1| hypothetical protein HMPREF0428_00116 [Gemella haemolysans M341]
Length = 299
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 121/219 (55%), Gaps = 33/219 (15%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ +K G+++ E + L +DIP+DIVYEDD++++VNK MVVHP+ G+
Sbjct: 48 IKTNYKLKDGNVITIEYKEPEELDVVKQDIPIDIVYEDDDLIIVNKAKGMVVHPSVGHKD 107
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L H L SSI+G +IRPGIVHR+DK TSGL
Sbjct: 108 GTLVNALLFHSEL------------------------SSING-TIRPGIVHRIDKDTSGL 142
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H LSE ++R Y +L G G I+ PI+R+P R MA I
Sbjct: 143 LIVAKNDKAHVKLSEMIANKDVKRKYYALVHGSIKHDYGTIDAPIARNPKERKEMAVI-- 200
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + + + +KV++ L+E LETGRTHQ
Sbjct: 201 ----DEGKLSITHFKVVDRFE--KYTLIECELETGRTHQ 233
>gi|21674122|ref|NP_662187.1| ribosomal large subunit pseudouridine synthase D [Chlorobium
tepidum TLS]
gi|21647279|gb|AAM72529.1| ribosomal large subunit pseudouridine synthase D [Chlorobium
tepidum TLS]
Length = 329
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 124/218 (56%), Gaps = 30/218 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ +K D ++ T L+P E EDIP+ I+YEDD+++V++K A MVVHPA GN TG
Sbjct: 49 NYRIKSCDHIHITF--LRPPAPELAPEDIPISILYEDDDLMVIDKEAGMVVHPAFGNWTG 106
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TL N ILHH DA+D+ E +RPGIVHRLDK TSGL+
Sbjct: 107 TLANAILHHLG------------KDADDLDKTE----------MRPGIVHRLDKDTSGLI 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+VAK+ + L+ QF +E+VY ++ GVP+ SG I+ I R NR MA P
Sbjct: 145 IVAKNPVALHKLATQFARRQVEKVYKAIVWGVPNPPSGTIKTNIGRSHKNRKVMANFPFE 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G +HA + Y V+E LA AL++ L TGRTHQ
Sbjct: 205 GAEG--KHAITDYLVVEDLA--YFALMDMTLHTGRTHQ 238
>gi|303231392|ref|ZP_07318126.1| pseudouridine synthase, RluA family [Veillonella atypica
ACS-049-V-Sch6]
gi|429760093|ref|ZP_19292583.1| pseudouridine synthase, RluA family [Veillonella atypica KON]
gi|302513988|gb|EFL55996.1| pseudouridine synthase, RluA family [Veillonella atypica
ACS-049-V-Sch6]
gi|429178498|gb|EKY19776.1| pseudouridine synthase, RluA family [Veillonella atypica KON]
Length = 305
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 31/207 (14%)
Query: 35 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 94
++ I E + + EDIP++ +YED ++++VNKP MVVHPA GN +GTLVN +L+HC
Sbjct: 58 ISVDIPEPESVEILPEDIPVEYLYEDHDIIIVNKPRGMVVHPAIGNYSGTLVNALLYHC- 116
Query: 95 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAH 154
+D+S I+G IRPGIVHRLDK TSG+++ AK++ +H
Sbjct: 117 ---------------KDLS-------GING-EIRPGIVHRLDKDTSGVMMAAKNDAAHIG 153
Query: 155 LSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAAS 214
L+EQ K H+ +R Y++L G + G I+ PI R P +R++MA + ++K A +
Sbjct: 154 LAEQVKAHSAKRTYLALVQGNIVEEKGIIKAPIGRHPKDRMKMAVVFENSK-----EAVT 208
Query: 215 RYKVIEILAGGGSALVEWRLETGRTHQ 241
+KV+E G LVE LETGRTHQ
Sbjct: 209 HFKVLERY--GYHTLVECVLETGRTHQ 233
>gi|374289521|ref|YP_005036606.1| putative ribosomal large subunit pseudouridine synthase
[Bacteriovorax marinus SJ]
gi|301168062|emb|CBW27648.1| putative ribosomal large subunit pseudouridine synthase
[Bacteriovorax marinus SJ]
Length = 327
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 111/192 (57%), Gaps = 31/192 (16%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDA 109
E+IPL+I YED+++++VNK A MVVHPAPGN TGTLVN IL+HC D
Sbjct: 86 ENIPLEIHYEDEDLIIVNKAAGMVVHPAPGNYTGTLVNAILYHC-------------KDI 132
Query: 110 EDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYI 169
+ + D RPGIVHRLDKGTSG++VVAK++ H L + F H I R Y
Sbjct: 133 KGVGDQR-----------RPGIVHRLDKGTSGIMVVAKNQKCHEGLVKLFSTHDITRRYE 181
Query: 170 SLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSAL 229
+ G + G++E I R P NR++M S + +HA + Y+V++ A
Sbjct: 182 CIAMGKSFPTGGKLESNIGRHPQNRLKM-----STESKAGKHALTHYRVLKQF--DKVAH 234
Query: 230 VEWRLETGRTHQ 241
VE +LETGRTHQ
Sbjct: 235 VELKLETGRTHQ 246
>gi|260101276|ref|ZP_05751513.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
helveticus DSM 20075]
gi|260084917|gb|EEW69037.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
helveticus DSM 20075]
Length = 306
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 123/218 (56%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ ++ GD + + ++PL E+IPLDIVYED+ V+VVNKP MVVHPAPG+
Sbjct: 52 KVSYKIQAGDKIEINVPAVKPLDVVPENIPLDIVYEDEVVIVVNKPQGMVVHPAPGHPDH 111
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN +L+H +D++ E RPGIVHR+DK TSGLL
Sbjct: 112 TLVNALLYHT----------------QDLAQSPE--------GFRPGIVHRIDKDTSGLL 147
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK+ + L +Q T +R+Y ++ G + +G I+ PI R+ +R +MA +
Sbjct: 148 MIAKNAKARESLEDQLAHKTNKRIYWAIVHGNFGEENGVIDAPIGRNLYDRKKMAVVENG 207
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + +KV++ G +L+E +LETGRTHQ
Sbjct: 208 KK------AVTHFKVLKQFK--GYSLIECQLETGRTHQ 237
>gi|418033307|ref|ZP_12671784.1| hypothetical protein BSSC8_27280 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351469455|gb|EHA29631.1| hypothetical protein BSSC8_27280 [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 303
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 121/219 (55%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ ++ GD V T+ E + L AE + LDI YED +VLVVNKP MVVHPAPG+ T
Sbjct: 49 VKANYKIQPGDQVTVTVPEPEALDVLAEPMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLT 108
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVNG++ HC D+ S I+G +RPGIVHR+DK TSGL
Sbjct: 109 GTLVNGLMAHCI----------------DL-------SGINGV-MRPGIVHRIDKDTSGL 144
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
L+VAK++ +H L Q T+ R Y ++ G+ S G I+ PI RD +R M
Sbjct: 145 LMVAKNDMAHESLVNQLVNKTVTRKYTAVVHGLISHDDGTIDAPIGRDKKDRQSMTVT-- 202
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++A + + V+E LVE +LETGRTHQ
Sbjct: 203 ----RDGKNAVTHFHVLERFQ--DFTLVECQLETGRTHQ 235
>gi|336307721|gb|AEI50823.1| pseudouridine synthase, RluA family [Runella slithyformis DSM
19594]
Length = 342
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 123/220 (55%), Gaps = 35/220 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAE---AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
S+ +K D++ T+S P R AE+IPL I+YED VLV+NKPA MVVHPA GN +
Sbjct: 67 SYKIKPLDVI--TVSMPHPPRETDIVAENIPLTIIYEDQEVLVLNKPAGMVVHPAYGNWS 124
Query: 83 GTLVNGILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
GT+VN +++H LPT N EA RPG++HR+DK TSG
Sbjct: 125 GTVVNALVYHFQHLPT--GRNGEA----------------------RPGLIHRIDKDTSG 160
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LLV+AK E+S AH++ QF HT ER Y +L G P + G I I R +R M
Sbjct: 161 LLVIAKTEYSMAHIARQFFEHTTERTYFALVWGEPKTTEGTIVGHIGRSARDRKVMDVYE 220
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ Q +HA + YKV++ +LV+ LETGRTHQ
Sbjct: 221 DGS---QGKHAVTHYKVLKTFK--YVSLVQCNLETGRTHQ 255
>gi|365858615|ref|ZP_09398538.1| putative ribosomal large subunit pseudouridine synthase D
[Acetobacteraceae bacterium AT-5844]
gi|363713926|gb|EHL97486.1| putative ribosomal large subunit pseudouridine synthase D
[Acetobacteraceae bacterium AT-5844]
Length = 343
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 110/195 (56%), Gaps = 30/195 (15%)
Query: 48 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 107
+A+DIPL +++ED ++V++KPA +VVHPAPGN GTLVN +L H
Sbjct: 95 QAQDIPLTVLFEDRQLIVLDKPAGLVVHPAPGNEDGTLVNALLAHAG------------- 141
Query: 108 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQF-KLHTIER 166
+E + G RPGIVHRLDK TSG++VVAK E +H LS F +ER
Sbjct: 142 --------DELAG--IGGEKRPGIVHRLDKDTSGVMVVAKTERAHQTLSATFASRENLER 191
Query: 167 VYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGG 226
Y++LT GVP+ +G IE PI R P +R RMA + + K R++ R G
Sbjct: 192 SYLALTWGVPTSLTGEIEAPIGRHPTDRKRMAVVARNGKDALTRYSTERA------WGTA 245
Query: 227 SALVEWRLETGRTHQ 241
AL+ RL TGRTHQ
Sbjct: 246 CALIRCRLATGRTHQ 260
>gi|375256746|ref|YP_005015913.1| RluA family pseudouridine synthase [Tannerella forsythia ATCC
43037]
gi|363408630|gb|AEW22316.1| pseudouridine synthase, RluA family [Tannerella forsythia ATCC
43037]
Length = 362
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 109/192 (56%), Gaps = 28/192 (14%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDA 109
EDIPLDIVYED+++L+VNKPA +VVHP GN TGTLVN + H + D
Sbjct: 110 EDIPLDIVYEDEDLLIVNKPAGLVVHPGHGNYTGTLVNALAFHF--------KDHPYYDP 161
Query: 110 EDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYI 169
D R G+VHR+DK TSGLLV+AK + L QF T +R Y+
Sbjct: 162 SDP---------------RLGLVHRIDKDTSGLLVIAKKPEAKTDLGRQFFNKTTQRNYV 206
Query: 170 SLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSAL 229
+LT G+ + GRIE I RD +R++M P Q + A + Y+V+E L G +L
Sbjct: 207 ALTWGILKEDEGRIEGNIGRDVRDRLKMCVFPDGE---QGKPAVTHYRVLERL--GYVSL 261
Query: 230 VEWRLETGRTHQ 241
VE RLETGRTHQ
Sbjct: 262 VECRLETGRTHQ 273
>gi|332638853|ref|ZP_08417716.1| pseudouridine synthase [Weissella cibaria KACC 11862]
Length = 304
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 121/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++VK D + T+ E + + EDIPLDIVYEDD++LVVNKP MVVHPA G+ +GTL
Sbjct: 50 KYSVKPNDEIKFTVPEAVEIDLQPEDIPLDIVYEDDDLLVVNKPQGMVVHPALGHESGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ H L S+I+G +RPGIVHR+DK TSGLL+V
Sbjct: 110 VNALMFHTPL------------------------STINGV-VRPGIVHRIDKDTSGLLMV 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K R Y +L G ++ G I+ P+ R +R + A + G
Sbjct: 145 AKNDKAHESLSAQLKDKKNLRQYYALVHGEFVENEGTIKAPLGRSSADRKKQAVVAG--- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV++ G L++ LETGRTHQ
Sbjct: 202 ---GRDAVTHFKVVKRFV--GYTLLQVTLETGRTHQ 232
>gi|383774169|ref|YP_005453236.1| pseudouridine synthase-like protein [Bradyrhizobium sp. S23321]
gi|381362294|dbj|BAL79124.1| pseudouridine synthase-like protein [Bradyrhizobium sp. S23321]
Length = 335
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 121/224 (54%), Gaps = 37/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+++V GD + + E P + EDI LDIV+EDD+++V+NKP +VVHPA G+ TGTL
Sbjct: 59 AYHVSSGDTITIDVPEAVPAEPKGEDITLDIVFEDDDIVVLNKPKGLVVHPAAGHETGTL 118
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC S S G RPGIVHRLDK T+GL+VV
Sbjct: 119 VNALIAHCGT-----------------------SLSGIGGVRRPGIVHRLDKDTTGLMVV 155
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++ +HA L+ QF H + R Y++ GVP + G ++ PI R P R +MA
Sbjct: 156 AKNDLAHASLTAQFADHGRTGPMRRGYMAFAWGVPGRHRGTVDAPIDRHPYAREKMAV-- 213
Query: 202 GSNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
R A + ++++E AG + L+ LETGRTHQ
Sbjct: 214 ----RQSGREAVTHWEILESFAGRDGKPIATLLACELETGRTHQ 253
>gi|325661581|ref|ZP_08150205.1| hypothetical protein HMPREF0490_00939 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472108|gb|EGC75322.1| hypothetical protein HMPREF0490_00939 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 310
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 120/209 (57%), Gaps = 30/209 (14%)
Query: 33 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 92
D ++ TI EL+ E IPLDI+YED+++LVVNKP MVVHP+ G+ +GTLVN ++ H
Sbjct: 58 DHISVTIPELKEPDILPEQIPLDILYEDEDILVVNKPKGMVVHPSAGHYSGTLVNALMFH 117
Query: 93 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSH 152
C ++ S I+G +RPGIVHR+D T+G L+V K++ +H
Sbjct: 118 C----------------------KDQLSGINGV-MRPGIVHRIDMDTTGSLIVCKNDFAH 154
Query: 153 AHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHA 212
L+EQ K HTI R Y ++ GV + +G I+ PI R P R +M+ + +HA
Sbjct: 155 QSLAEQLKDHTITRKYHAIVHGVLKEDNGTIDAPIGRHPVERKKMSV-----NYKNGKHA 209
Query: 213 ASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ Y+V++ VE +LETGRTHQ
Sbjct: 210 VTHYRVLKRFE--KFTYVECQLETGRTHQ 236
>gi|303229468|ref|ZP_07316258.1| pseudouridine synthase, RluA family [Veillonella atypica
ACS-134-V-Col7a]
gi|401680523|ref|ZP_10812438.1| pseudouridine synthase, RluA family [Veillonella sp. ACP1]
gi|302516004|gb|EFL57956.1| pseudouridine synthase, RluA family [Veillonella atypica
ACS-134-V-Col7a]
gi|400218431|gb|EJO49311.1| pseudouridine synthase, RluA family [Veillonella sp. ACP1]
Length = 305
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 31/207 (14%)
Query: 35 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 94
++ I E + + EDIP++ +YED ++++VNKP MVVHPA GN +GTLVN +L+HC
Sbjct: 58 ISVDIPEPESVEILPEDIPVEYLYEDHDIIIVNKPRGMVVHPAIGNYSGTLVNALLYHC- 116
Query: 95 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAH 154
+D+S I+G IRPGIVHRLDK TSG+++ AK++ +H
Sbjct: 117 ---------------KDLS-------GING-EIRPGIVHRLDKDTSGVMMAAKNDAAHIG 153
Query: 155 LSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAAS 214
L+EQ K H+ +R Y++L G + G I+ PI R P +R++MA + ++K A +
Sbjct: 154 LAEQVKAHSAKRTYLALVQGNIVEEKGIIKAPIGRHPKDRMKMAVVFENSK-----EAVT 208
Query: 215 RYKVIEILAGGGSALVEWRLETGRTHQ 241
+KV+E G LVE LETGRTHQ
Sbjct: 209 HFKVLERY--GYHTLVECVLETGRTHQ 233
>gi|384045145|ref|YP_005493162.1| RNA pseudouridine synthase ylyB [Bacillus megaterium WSH-002]
gi|345442836|gb|AEN87853.1| Uncharacterized RNA pseudouridine synthase ylyB [Bacillus
megaterium WSH-002]
Length = 304
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 123/216 (56%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ K GD V + EL+ L AE++ LDI YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 52 NYKCKTGDAVIIEVPELEELDVVAEEMDLDIYYEDQDVLVVNKPRGMVVHPAPGHHSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++ HC +D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 112 VNGLMAHC----------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV + G I+ PI RD +R M +
Sbjct: 148 AKNDLAHESLVSQLVAKTVTRRYKAIVHGVIAHDHGTIDAPIGRDKQDRQSMTVTDEN-- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R A + + V++ +LVE +LETGRTHQ
Sbjct: 206 ---SRDAVTHFTVLQRFK--DFSLVECKLETGRTHQ 236
>gi|227431875|ref|ZP_03913898.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227352342|gb|EEJ42545.1| ribosomal large subunit pseudouridine synthase D [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 312
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 134/227 (59%), Gaps = 33/227 (14%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
+ ++ K+ S+ V GD ++ T E Q + EAE+IPLDI+YEDD+++VVNKP MVV
Sbjct: 40 TILVNNHKVKRSYKVVSGDTISITPPETQETKIEAENIPLDIIYEDDDIIVVNKPQGMVV 99
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPA G+++GTLVN +LHH L T+ + EF RPGIVHR
Sbjct: 100 HPAAGHSSGTLVNALLHHSPLSTI----------------NGEF---------RPGIVHR 134
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+D+ TSGLL+VAK++ +H LSEQ K H +RVY +L G ++ SG IE PI R +R
Sbjct: 135 IDRDTSGLLMVAKNDKAHHSLSEQLKSHKNQRVYYALVRGEFTEDSGTIEAPIGRHKIDR 194
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A I G R A + ++V++ G L++ LETGRTHQ
Sbjct: 195 KKQAVIEG------GREAVTHFRVLKRYV--GYTLLKVNLETGRTHQ 233
>gi|159045150|ref|YP_001533944.1| ribosomal large subunit pseudouridine synthase D [Dinoroseobacter
shibae DFL 12]
gi|157912910|gb|ABV94343.1| ribosomal large subunit pseudouridine synthase D [Dinoroseobacter
shibae DFL 12]
Length = 347
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 120/232 (51%), Gaps = 46/232 (19%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD++ + + AE IPLD+++ED +++VVNKPA MVVHPAPG+ GTLVN
Sbjct: 64 RVAAGDVLTLRLGAPAEVPLVAEAIPLDVIFEDADLIVVNKPAGMVVHPAPGSPAGTLVN 123
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++HHC S S G RPGIVHR+DK TSGLLVVAK
Sbjct: 124 ALMHHCG-----------------------DSLSGIGGEKRPGIVHRIDKDTSGLLVVAK 160
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGR----------------IEVPISRDP 191
+H+H L+ QF H++ER+Y +L GVP S R + ++R
Sbjct: 161 SDHAHQGLAAQFAAHSVERIYDALVHGVPEASDPRLRGLPMVRFEPGGVLCLRASLARHR 220
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILA--GGGSALVEWRLETGRTHQ 241
+R R A + GQ RHA +R +V G + L W LETGRTHQ
Sbjct: 221 TDRQRQAVV----AEGQGRHAVTRARVEARFGDPAGVAHLACW-LETGRTHQ 267
>gi|395778620|ref|ZP_10459132.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|423715067|ref|ZP_17689291.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
gi|395417828|gb|EJF84165.1| RluA family pseudouridine synthase [Bartonella elizabethae
Re6043vi]
gi|395430551|gb|EJF96593.1| RluA family pseudouridine synthase [Bartonella elizabethae F9251]
Length = 334
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 124/222 (55%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K ++ + +L+ AE I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN
Sbjct: 56 LKSNQIIELAMPDLRDAEPSAEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+++HC S S G RPGIVHRLDK TSG++VVAK+
Sbjct: 116 LIYHCG-----------------------NSLSGIGGVKRPGIVHRLDKNTSGVMVVAKN 152
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+ +H LS QF H ++R Y +L G P ++ I+ +SR P+NR + A +
Sbjct: 153 DLAHKSLSSQFSDHGRTCALDRRYHALIWGTPHRNVWTIDASLSRSPHNRTKQAVVHNQT 212
Query: 205 KHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
H ARHA + + ++E + ++L+E RLETGRTHQ
Sbjct: 213 PH--ARHAVTHFSLLEKYGTREDSTSFASLLECRLETGRTHQ 252
>gi|209542655|ref|YP_002274884.1| RluA family pseudouridine synthase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530332|gb|ACI50269.1| pseudouridine synthase, RluA family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 322
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 116/213 (54%), Gaps = 29/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ G + P A+ IP I+YED +++V++KPA +VVHPAPGN GTLVN
Sbjct: 60 VRAGLCYEIRMPPAIPATPRAQAIPFAILYEDSDLIVLDKPAGLVVHPAPGNEDGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC S + G RPGIVHRLDK TSG++VVAK
Sbjct: 120 LLAHCG-----------------------DSLTGIGGERRPGIVHRLDKDTSGVMVVAKT 156
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E +H LS+ F I+R Y++L G+ S +SG E I RD +R RMA + HG
Sbjct: 157 EQAHTALSDAFAARDIDRTYLALAWGILSPASGTFEGAIGRDRRDRKRMAVV----THG- 211
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HA + Y+ + GG S+ VE RL TGRTHQ
Sbjct: 212 GKHAMTHYRTLHSFHGGISS-VECRLATGRTHQ 243
>gi|146277612|ref|YP_001167771.1| RluA family pseudouridine synthase [Rhodobacter sphaeroides ATCC
17025]
gi|145555853|gb|ABP70466.1| ribosomal large subunit pseudouridine synthase D [Rhodobacter
sphaeroides ATCC 17025]
Length = 349
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 126/221 (57%), Gaps = 38/221 (17%)
Query: 33 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 92
++V +E++ L E IPL +V+ED +++V++KP MVVHPAPG TGTLVN +LHH
Sbjct: 72 EIVTGAAAEVEAL---PEAIPLSVVWEDADLIVIDKPVGMVVHPAPGQWTGTLVNALLHH 128
Query: 93 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSH 152
C S S G RPGIVHR+DK TSGLLVVAK + +H
Sbjct: 129 CGA-----------------------SLSGIGGEKRPGIVHRIDKDTSGLLVVAKTDRAH 165
Query: 153 AHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPGSNKHG 207
L+ QF+ HT+ER Y++L GVP S R+ +S +P +R+A A +++
Sbjct: 166 QGLAAQFEAHTVERRYLALVHGVPEPSDPRLRGIRGVSFEPGGVLRIATGIARHRTDRQR 225
Query: 208 QA------RHAASRYKVIEILAG-GGSALVEWRLETGRTHQ 241
QA RHA +R +++E +ALVE RLETGRTHQ
Sbjct: 226 QAVTFEGGRHAVTRARLLERFGTPPAAALVECRLETGRTHQ 266
>gi|333997062|ref|YP_004529674.1| ribosomal large subunit pseudouridine synthase D [Treponema
primitia ZAS-2]
gi|333740776|gb|AEF86266.1| ribosomal large subunit pseudouridine synthase D [Treponema
primitia ZAS-2]
Length = 319
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 129/224 (57%), Gaps = 34/224 (15%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ +S VK GD++ + +E +PL E+IPL+++YEDD V+V+NK MVVHP GN +
Sbjct: 48 VKLSRPVKPGDLLELSWAESEPLDLIPENIPLELLYEDDRVIVLNKAQGMVVHPGAGNHS 107
Query: 83 GTLVNGILH-HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASI----RPGIVHRLDK 137
GTL N +L+ + P SS+ GA+I RPGIVHRLDK
Sbjct: 108 GTLANALLYRRLTRP----------------------GSSVPGAAIPGNLRPGIVHRLDK 145
Query: 138 GTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRM 197
TSG+++ A D+ + A L++QFK T+++ YI+L G P ++ G IE I RD +R R
Sbjct: 146 DTSGVIIAAWDDAALAFLADQFKARTVKKTYIALVQGTPKETQGVIETRIVRDSRDRKRF 205
Query: 198 AAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
S G+A A +RY+VI + G +L+ + +TGRTHQ
Sbjct: 206 TV---SFDKGKA--ALTRYRVIR--SWGAWSLLLLQPKTGRTHQ 242
>gi|409123029|ref|ZP_11222424.1| ribosomal large subunit pseudouridine synthase D [Gillisia sp.
CBA3202]
Length = 313
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 123/219 (56%), Gaps = 33/219 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRA--EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK GD+V E P EDIPL+IVYEDD+++V+NK A MVVHP GN +G
Sbjct: 31 NYKVKPGDVVQVMF-EHPPYEFLLTPEDIPLNIVYEDDSLMVINKEAGMVVHPGHGNYSG 89
Query: 84 TLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
TL+N ++ H +LP + +S RPG+VHR+DK TSGL
Sbjct: 90 TLINALIFHIDNLP--------------------------NNSSERPGLVHRIDKDTSGL 123
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LV+AK E + HLS+QF T R YI+L G + GRIE I R P NR++ +
Sbjct: 124 LVIAKTEAAMTHLSKQFFKKTSSREYIALVWGNVEEDEGRIEGNIGRHPKNRLQ-NTVYM 182
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++ Q + A + YKVIE L G LV +LETGRTHQ
Sbjct: 183 DDEEEQGKPAVTHYKVIERL--GYVTLVSCKLETGRTHQ 219
>gi|371776249|ref|ZP_09482571.1| ribosomal large subunit pseudouridine synthase D [Anaerophaga sp.
HS1]
Length = 361
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 120/221 (54%), Gaps = 31/221 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ ++ +K D+V +S P E E+IPLDIV+ED+ ++VVNKP MVVHP GN
Sbjct: 79 VKANYKIKPDDIVTIEMS-WPPREIEIVPENIPLDIVFEDNELIVVNKPPGMVVHPGYGN 137
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TGTLVN + H + D F S RPG+VHR+DK TS
Sbjct: 138 YTGTLVNALAWH-------------------LKDHPWFQSK----DPRPGLVHRIDKDTS 174
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLLVVAK E++ HL++QF T R Y +L G+ + G I I R+P +R +M
Sbjct: 175 GLLVVAKTENAKTHLAQQFFNKTTSRTYQALVWGIVKEDEGTIVGNIGRNPRDRKQMTVF 234
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
P Q + A + YKV+E L G L+E RLETGRTHQ
Sbjct: 235 PDDT---QGKPAVTHYKVLERL--GYVTLLECRLETGRTHQ 270
>gi|374314771|ref|YP_005061199.1| RluA family pseudouridine synthase [Sphaerochaeta pleomorpha str.
Grapes]
gi|359350415|gb|AEV28189.1| pseudouridine synthase, RluA family [Sphaerochaeta pleomorpha str.
Grapes]
Length = 317
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 130/216 (60%), Gaps = 15/216 (6%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S +K GD+++ + S+ +A+D+PL ++YED ++LV++K MVVHPA GN GT+
Sbjct: 54 SKQLKQGDVISISYSQEFFEGLKAQDLPLHVLYEDRDMLVIDKEQGMVVHPANGNYEGTV 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LH +F+ +++ ++EE + + +IRPGIVHRLDK TSG+LV+
Sbjct: 114 VNALLHRYG---------SSFTTSDEKQEEEEEVADLQTETIRPGIVHRLDKDTSGVLVI 164
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
A+ SH +LS QFK HT E+ YI++ GV SQ G++ +SRD ++R + A
Sbjct: 165 ARTRESHRNLSAQFKEHTTEKWYIAIAKGVFSQKQGKLITHLSRDKHDRKKFAVCA---- 220
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ R A + Y V++ ALV R+ TGRTHQ
Sbjct: 221 ENEGRLAETHYFVLKQYR--DFALVRIRIFTGRTHQ 254
>gi|322372447|ref|ZP_08046983.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
C150]
gi|321277489|gb|EFX54558.1| ribosomal large subunit pseudouridine synthase D [Streptococcus sp.
C150]
Length = 297
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYAVKEGDVITYELPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H +D+ SSI+G +RPGIVHR+DK TSGLL+V
Sbjct: 106 VNALMYHV----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ + K R Y+++ G G IE PI R +R + A
Sbjct: 142 AKNDKAHNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSDKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R+ V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFTVLERF--GNYTLVELQLETGRTHQ 229
>gi|162148037|ref|YP_001602498.1| ribosomal large subunit pseudouridine synthase D [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786614|emb|CAP56196.1| putative ribosomal large subunit pseudouridine synthase D
[Gluconacetobacter diazotrophicus PAl 5]
Length = 295
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 116/213 (54%), Gaps = 29/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ G + P A+ IP I+YED +++V++KPA +VVHPAPGN GTLVN
Sbjct: 33 VRAGLCYEIRMPPAIPATPRAQAIPFAILYEDSDLIVLDKPAGLVVHPAPGNEDGTLVNA 92
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC S + G RPGIVHRLDK TSG++VVAK
Sbjct: 93 LLAHCG-----------------------DSLTGIGGERRPGIVHRLDKDTSGVMVVAKT 129
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E +H LS+ F I+R Y++L G+ S +SG E I RD +R RMA + HG
Sbjct: 130 EQAHTALSDAFAARDIDRTYLALAWGILSPASGTFEGAIGRDRRDRKRMAVV----THG- 184
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HA + Y+ + GG S+ VE RL TGRTHQ
Sbjct: 185 GKHAMTHYRTLHSFHGGISS-VECRLATGRTHQ 216
>gi|387927105|ref|ZP_10129784.1| Pseudouridylate synthase, 23S RNA-specific [Bacillus methanolicus
PB1]
gi|387589249|gb|EIJ81569.1| Pseudouridylate synthase, 23S RNA-specific [Bacillus methanolicus
PB1]
Length = 303
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 124/226 (54%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K+ ++ D + I E + L E++ LDI YED +VLVVNKP MVVH
Sbjct: 42 ILVNGQKVKTNYKCSLNDQIEIFIPEPEELDVIPEEMNLDIYYEDHDVLVVNKPKGMVVH 101
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PAPG+++GTLVNG++ HC +D+ S I+G +RPGIVHR+
Sbjct: 102 PAPGHSSGTLVNGLMAHC----------------KDL-------SGINGV-LRPGIVHRI 137
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL++AK++ SH L Q T+ R Y ++ GV G I+ P+ RDP +R
Sbjct: 138 DKDTSGLLMIAKNDFSHESLVNQLVDKTVTRKYKAIVHGVIPHDYGTIDAPLGRDPKDRQ 197
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
MA + +HA + + V+E +E +LETGRTHQ
Sbjct: 198 SMAVV------DNGKHAVTHFHVLERFK--DFTFIECQLETGRTHQ 235
>gi|335047539|ref|ZP_08540560.1| pseudouridine synthase, RluA family [Parvimonas sp. oral taxon 110
str. F0139]
gi|333761347|gb|EGL38902.1| pseudouridine synthase, RluA family [Parvimonas sp. oral taxon 110
str. F0139]
Length = 292
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 115/210 (54%), Gaps = 33/210 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
GD + +I + + + AEDI LDIVYEDD ++++NKP +MVVHPA GN TLVN +L+
Sbjct: 55 GDEITVSIPDKKEITLVAEDIALDIVYEDDYIIIINKPRNMVVHPAAGNEAHTLVNALLN 114
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC L + S RPGIVHRLDK T+GL+V AKD+ +
Sbjct: 115 HCKLSMINSE--------------------------RPGIVHRLDKDTTGLIVCAKDDET 148
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARH 211
H L E F I + Y+++ +G S+ +G I+ PI RD +R +M+ K +
Sbjct: 149 HLKLVEMFSNREINKKYLAICNGSFSKENGFIDKPIGRDEKDRKKMSV-----KSKSGKE 203
Query: 212 AASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + Y ++ + +LV+ L TGRTHQ
Sbjct: 204 ALTEYNILT--SNLKYSLVDVTLHTGRTHQ 231
>gi|311748762|ref|ZP_07722547.1| ribosomal large subunit pseudouridine synthase D [Algoriphagus sp.
PR1]
gi|126577297|gb|EAZ81545.1| ribosomal large subunit pseudouridine synthase D [Algoriphagus sp.
PR1]
Length = 344
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 110/192 (57%), Gaps = 28/192 (14%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDA 109
E I LDI+YED +L+VNKPA MVVHPA GN +GTL N +++H F D
Sbjct: 93 EKIELDIIYEDKYLLIVNKPAGMVVHPAHGNWSGTLANALVYH-------------FQDL 139
Query: 110 EDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYI 169
++ +E RPG+VHR+DK TSGLLV+AK E + HL+ QF HTI+R YI
Sbjct: 140 PEMKGNEG----------RPGLVHRIDKDTSGLLVIAKQEEAMTHLASQFFHHTIDRTYI 189
Query: 170 SLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSAL 229
+L G P + G IE + R NR M P Q +HA + +KV++ L +L
Sbjct: 190 ALVWGEPKEDEGTIEGNVGRSAKNRKVMDVFPDGE---QGKHAITHWKVLKRLR--YVSL 244
Query: 230 VEWRLETGRTHQ 241
++ LETGRTHQ
Sbjct: 245 IQCNLETGRTHQ 256
>gi|206900390|ref|YP_002251511.1| pseudouridylate synthase [Dictyoglomus thermophilum H-6-12]
gi|206739493|gb|ACI18551.1| pseudouridylate synthase, 23S RNA-specific [Dictyoglomus
thermophilum H-6-12]
Length = 303
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 119/216 (55%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S+ VK GD + + + + +DIP++IVYEDD+++++NKP MVVHPA G+ TL
Sbjct: 51 SYKVKVGDKIEVIVPPPEETEIKPQDIPIEIVYEDDDIVIINKPKGMVVHPAHGHYNDTL 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+ +D+S G IRPGIVHRLDK T+GLL++
Sbjct: 111 VNALLYRI----------------KDLSG--------IGGEIRPGIVHRLDKDTTGLLII 146
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH LSEQ K ++R Y ++ G R+E P+ R P +R RMA +P
Sbjct: 147 AKNDVSHQRLSEQLKNRILKRTYWAICEGEIPWEEKRVEAPLGRHPIDRKRMAIVP---- 202
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + +KV+E G L+ LETGRTHQ
Sbjct: 203 --YGKLAITNFKVLERFK--GYTLISADLETGRTHQ 234
>gi|330993274|ref|ZP_08317210.1| Ribosomal large subunit pseudouridine synthase D [Gluconacetobacter
sp. SXCC-1]
gi|329759676|gb|EGG76184.1| Ribosomal large subunit pseudouridine synthase D [Gluconacetobacter
sp. SXCC-1]
Length = 323
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 115/213 (53%), Gaps = 28/213 (13%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ G + P + +DI LDI+YED +++V++KPA MVVHPAPGN GTLVN
Sbjct: 60 VRAGMCYEIHLPPAIPATPQGQDIALDILYEDRDLIVLDKPAGMVVHPAPGNEDGTLVNA 119
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC E + I G RPGIVHRLDK TSG++V AK
Sbjct: 120 LLAHCG----------------------ESLTGIGGEK-RPGIVHRLDKDTSGIMVAAKT 156
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
E +H LS F I+R Y ++ G+P + G + I RD +R RMA I +G
Sbjct: 157 ELAHQALSLAFAERRIDRAYQAICWGLPVPAQGSFDGAIGRDRRDRKRMAVI----ANGG 212
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + Y+VIE GG A VE RL TGRTHQ
Sbjct: 213 GKQALTHYRVIETFH-GGLAHVECRLATGRTHQ 244
>gi|387761789|ref|YP_006068766.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius 57.I]
gi|339292556|gb|AEJ53903.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius 57.I]
Length = 296
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYAVKEGDVITYELPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H +D+ SSI+G +RPGIVHR+DK TSGLL++
Sbjct: 106 VNALMYHV----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMI 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ + K R Y+++ G G IE PI R +R + A
Sbjct: 142 AKNDKAHNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSAKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R+ V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFTVLERF--GNYTLVELQLETGRTHQ 229
>gi|210612741|ref|ZP_03289456.1| hypothetical protein CLONEX_01658 [Clostridium nexile DSM 1787]
gi|210151434|gb|EEA82442.1| hypothetical protein CLONEX_01658 [Clostridium nexile DSM 1787]
Length = 305
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 117/201 (58%), Gaps = 30/201 (14%)
Query: 41 ELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLAS 100
ELQ E+IP+DI+YED+++L+VNKP MVVHP+ G+ +GTLVN +++HC
Sbjct: 66 ELQEPDIVPENIPIDILYEDEDILIVNKPKGMVVHPSAGHYSGTLVNALMYHC------- 118
Query: 101 SNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFK 160
++ S I+G +RPGIVHR+D T+G L+V K++ H L+EQ K
Sbjct: 119 ---------------KDQLSGINGI-MRPGIVHRIDMDTTGSLLVCKNDFVHQDLAEQLK 162
Query: 161 LHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIE 220
H+I+R+Y ++ GV + G I+ PI R P R +M+ + +HA + YKVIE
Sbjct: 163 EHSIQRIYHAIVHGVIKEDEGTIDAPIGRHPIERKKMSV-----NYKNGKHAVTHYKVIE 217
Query: 221 ILAGGGSALVEWRLETGRTHQ 241
++ RLETGRTHQ
Sbjct: 218 RFK--NYTYIKCRLETGRTHQ 236
>gi|319649641|ref|ZP_08003797.1| pseudouridine synthase [Bacillus sp. 2_A_57_CT2]
gi|317398803|gb|EFV79485.1| pseudouridine synthase [Bacillus sp. 2_A_57_CT2]
Length = 300
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 123/226 (54%), Gaps = 32/226 (14%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K ++ D + +I E + L E + LDI YED +VLVVNKP MVVH
Sbjct: 39 VLVNGQKPKTNYKCTANDKIEISIPEPEELDVVPEKMDLDIYYEDKDVLVVNKPKGMVVH 98
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ TGTLVNG++ HC+ D+ S I+G +RPGIVHR+
Sbjct: 99 PAAGHGTGTLVNGLMAHCT----------------DL-------SGINGV-MRPGIVHRI 134
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL+VAK++ +H L Q T+ R Y ++ GV G I+ PI+RDP +R
Sbjct: 135 DKDTSGLLMVAKNDMAHESLVNQLMNKTVTRKYRAVVHGVIPHDYGTIDAPIARDPKDRQ 194
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
M + +HA + ++V+E LVE +LETGRTHQ
Sbjct: 195 SMTVV------DNGKHAVTHFQVLERFR--DFTLVECQLETGRTHQ 232
>gi|392957456|ref|ZP_10322979.1| hypothetical protein A374_11980 [Bacillus macauensis ZFHKF-1]
gi|391876419|gb|EIT85016.1| hypothetical protein A374_11980 [Bacillus macauensis ZFHKF-1]
Length = 303
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 126/227 (55%), Gaps = 31/227 (13%)
Query: 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVV 74
A+ + ++ ++ V G++V + + L E E++ L+IVYED +VLVVNKP MVV
Sbjct: 41 AITVDGKQIKTNYKVSAGEVVTIIVPDPVTLDVEPEEMNLEIVYEDGDVLVVNKPRGMVV 100
Query: 75 HPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134
HPAPGN +GTLVNG++ HC D+ S I+G +RPGIVHR
Sbjct: 101 HPAPGNYSGTLVNGLMAHC----------------RDL-------SGINGV-LRPGIVHR 136
Query: 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNR 194
+DK T+GLL+VAK++ +H L Q K T R Y ++ G G I+ PI RD ++R
Sbjct: 137 IDKDTTGLLMVAKNDMAHESLVNQLKAKTTTRKYKAIVHGNMPHDRGTIDAPIGRDKSDR 196
Query: 195 IRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RM + +R A + ++V+E VE +LETGRTHQ
Sbjct: 197 QRMTVTDEN-----SRDAITHFRVLERFP--DFTFVECQLETGRTHQ 236
>gi|408675561|ref|YP_006875309.1| pseudouridine synthase, RluA family [Emticicia oligotrophica DSM
17448]
gi|387857185|gb|AFK05282.1| pseudouridine synthase, RluA family [Emticicia oligotrophica DSM
17448]
Length = 343
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 35/220 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEA---EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
S+ VK D++ T S +P R E+IPLDIVYEDD++++VNKP MVVHPA GN +
Sbjct: 69 SYKVKPLDVI--TFSLPRPPRNHELLEENIPLDIVYEDDDLMIVNKPPRMVVHPAVGNWS 126
Query: 83 GTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
GTLVNG++++ +LPT + IRPG+VHR+DK TSG
Sbjct: 127 GTLVNGLVYYLKNLPTHRN------------------------GEIRPGLVHRIDKDTSG 162
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LLV+AK++ + L++QF HTIER Y +L GVP SG I I R NR + P
Sbjct: 163 LLVIAKNDFAMTFLAKQFSEHTIERTYYALVWGVPKNPSGTIHQFIGRSLKNRKIIEVYP 222
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ HG + + + YK+++ +L++ LETGRTHQ
Sbjct: 223 DGS-HG--KDSITHYKILKDYK--YVSLIQCNLETGRTHQ 257
>gi|312864274|ref|ZP_07724508.1| pseudouridine synthase, RluA family [Streptococcus vestibularis
F0396]
gi|322517241|ref|ZP_08070120.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
vestibularis ATCC 49124]
gi|311100275|gb|EFQ58484.1| pseudouridine synthase, RluA family [Streptococcus vestibularis
F0396]
gi|322124147|gb|EFX95681.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
vestibularis ATCC 49124]
Length = 296
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYAVKEGDVITYVLPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H +D+ SSI+G +RPGIVHR+DK TSGLL++
Sbjct: 106 VNALMYHV----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMI 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ + K R Y+++ G G IE PI R +R + A
Sbjct: 142 AKNDKAHNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSDKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R+ V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFTVLERF--GNYTLVELQLETGRTHQ 229
>gi|291543962|emb|CBL17071.1| ribosomal large subunit pseudouridine synthase D [Ruminococcus
champanellensis 18P13]
Length = 304
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 31/215 (14%)
Query: 28 NVKGGDMVNCTISELQPLR-AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
++ GD + I + PL + +++PL+IVYED+ +LVVNKP MVVHPA G+ GTLV
Sbjct: 52 KLREGDGLLVQIPDPAPLEDVQPQNLPLEIVYEDEALLVVNKPKGMVVHPAAGHPDGTLV 111
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
N +L+HC + S+I+G IRPGIVHR+DK TSGLL+VA
Sbjct: 112 NALLYHC----------------------QGRLSTINGV-IRPGIVHRIDKNTSGLLMVA 148
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K + +H HL+EQ K H+ R Y ++ G + SG ++ PI R +R +M +
Sbjct: 149 KTDFAHQHLAEQIKGHSFTREYEAIACGRFREPSGTVDAPIGRSTADRQKMCVTEKN--- 205
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
ARHA + Y V+ A A + RLETGRTHQ
Sbjct: 206 --ARHAVTHYAVLTQFA--KHAHIRCRLETGRTHQ 236
>gi|315607390|ref|ZP_07882389.1| ribosomal large subunit pseudouridine synthase D [Prevotella buccae
ATCC 33574]
gi|315250947|gb|EFU30937.1| ribosomal large subunit pseudouridine synthase D [Prevotella buccae
ATCC 33574]
Length = 367
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 127/237 (53%), Gaps = 34/237 (14%)
Query: 10 QVSVLALFLSMDKLSVSHN--VKGGDMVNCTISELQ-PLRAEAEDIPLDIVYEDDNVLVV 66
Q + A F+ ++ V N V+ GD+V + + EDIPL +VYEDD ++V+
Sbjct: 65 QSAADAGFIRVNGRPVKSNYKVRPGDVVTLMLDRPKHDTSIVPEDIPLAVVYEDDGLMVI 124
Query: 67 NKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGA 125
NKPA MVVHP GN TGTL+N + ++ LPT +++ E
Sbjct: 125 NKPAGMVVHPGAGNFTGTLINAVAYYLKDLPTFDANSPEV-------------------- 164
Query: 126 SIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEV 185
G+VHR+DK TSGLLVVAK + L +QF T R Y +L G GRIE
Sbjct: 165 ----GLVHRIDKDTSGLLVVAKTPEAKTCLGKQFFNKTTHRSYNALVWGNIVDDEGRIEG 220
Query: 186 PISRDPNNRIRMAAI-PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
I+RDP NR+RM PGS G + A + Y+V+E G + LVE RLETGRTHQ
Sbjct: 221 NIARDPRNRLRMKVFAPGS---GIGKSAVTHYRVLERF--GYTTLVECRLETGRTHQ 272
>gi|332877311|ref|ZP_08445059.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357044439|ref|ZP_09106090.1| pseudouridine synthase, RluA family [Paraprevotella clara YIT
11840]
gi|332684694|gb|EGJ57543.1| pseudouridine synthase, RluA family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355532689|gb|EHH02071.1| pseudouridine synthase, RluA family [Paraprevotella clara YIT
11840]
Length = 362
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 115/193 (59%), Gaps = 27/193 (13%)
Query: 49 AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSD 108
AEDIPLDIVYED++++VV+KPA +VVHP GN TGTLVN I H
Sbjct: 106 AEDIPLDIVYEDEDLMVVDKPAGLVVHPGCGNYTGTLVNAIAWH---------------- 149
Query: 109 AEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVY 168
+ D+ ++ + G+VHR+DK TSGLLVVAK+ + HL +QF T +R+Y
Sbjct: 150 ---LKDNPDYDPNDPTV----GLVHRIDKDTSGLLVVAKNADAKTHLGKQFFNKTTKRLY 202
Query: 169 ISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSA 228
+L G + GRIE I+R P +R++MA P ++ G +HA + Y+V+E
Sbjct: 203 NALVWGNFQEEEGRIEGNIARHPKDRMQMAVFPPDSEIG--KHAVTHYRVLENF--NYVT 258
Query: 229 LVEWRLETGRTHQ 241
LVE RLETGRTHQ
Sbjct: 259 LVECRLETGRTHQ 271
>gi|222086840|ref|YP_002545374.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
gi|221724288|gb|ACM27444.1| pseudouridylate synthase [Agrobacterium radiobacter K84]
Length = 343
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 125/224 (55%), Gaps = 36/224 (16%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD+ ++ E + + EDIPLD+++EDD+V+V++KPA +VVHP GN TGTLVN
Sbjct: 66 KVRPGDIYEISMPEPEDPTPQGEDIPLDVLFEDDDVIVISKPAGLVVHPGAGNWTGTLVN 125
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++HHC + S I G RPGIVHRLDK T+G++VVAK
Sbjct: 126 ALIHHCG----------------------DSLSGIGGVR-RPGIVHRLDKDTTGVMVVAK 162
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI-PG 202
++ +H HLS QF H +ER Y ++ G P Q G + P+ R +R R + PG
Sbjct: 163 NDIAHRHLSLQFADHGRTTPLERAYQAIVWGRPRQLVGTVNAPLGRATGDRTRRSVKRPG 222
Query: 203 SNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
S A A + Y+VIE A ++L++ LETGRTHQ
Sbjct: 223 SP---DADEAITHYEVIERFHEAPDATALASLIDCHLETGRTHQ 263
>gi|395784617|ref|ZP_10464444.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
gi|395422191|gb|EJF88402.1| RluA family pseudouridine synthase [Bartonella melophagi K-2C]
Length = 341
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 122/216 (56%), Gaps = 34/216 (15%)
Query: 35 VNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 94
+ I L+ + E E I LDI++EDD+++V+NKPA +VVHP GN TGTLVN ++HHC
Sbjct: 62 IELIIPPLKNIHLEGEAIVLDILFEDDHIIVINKPAGLVVHPGNGNWTGTLVNALIHHCG 121
Query: 95 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAH 154
+S S G RPGIVHRLDK TSG++VVAK++ +H
Sbjct: 122 -----------------------YSLSGIGGVKRPGIVHRLDKNTSGVMVVAKNDFAHKS 158
Query: 155 LSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQAR 210
LS QF H ++R Y +L P ++ G I+V + R P+NRI+ + N H AR
Sbjct: 159 LSAQFSDHGRTCALDRRYHALIWNAPRRNIGTIDVSLGRSPHNRIKQTVVRHQNVH--AR 216
Query: 211 HAASRYKVIE-----ILAGGGSALVEWRLETGRTHQ 241
A + + ++E + A ++L+E LETGRTHQ
Sbjct: 217 RAITHFSLLEKYKTCVDAEPFASLLECHLETGRTHQ 252
>gi|398382437|ref|ZP_10540524.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
gi|397717523|gb|EJK78140.1| pseudouridine synthase, RluA family [Rhizobium sp. AP16]
Length = 341
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 125/224 (55%), Gaps = 36/224 (16%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD+ ++ E + + EDIPLD+++EDD+V+V++KPA +VVHP GN TGTLVN
Sbjct: 64 KVRPGDIYEISMPEPEDPTPQGEDIPLDVLFEDDDVIVISKPAGLVVHPGAGNWTGTLVN 123
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++HHC + S I G RPGIVHRLDK T+G++VVAK
Sbjct: 124 ALIHHCG----------------------DSLSGIGGVR-RPGIVHRLDKDTTGVMVVAK 160
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI-PG 202
++ +H HLS QF H +ER Y ++ G P Q G + P+ R +R R + PG
Sbjct: 161 NDIAHRHLSLQFADHGRTTPLERAYQAIVWGRPRQLVGTVNAPLGRATGDRTRRSVKRPG 220
Query: 203 SNKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
S A A + Y+VIE A ++L++ LETGRTHQ
Sbjct: 221 SP---DADEAITHYEVIERFHEAPDATALASLIDCHLETGRTHQ 261
>gi|228478264|ref|ZP_04062872.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius SK126]
gi|340399333|ref|YP_004728358.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|421451886|ref|ZP_15901247.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius K12]
gi|228249943|gb|EEK09213.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius SK126]
gi|338743326|emb|CCB93834.1| pseudouridine synthase [Streptococcus salivarius CCHSS3]
gi|400182317|gb|EJO16579.1| Ribosomal large subunit pseudouridine synthase D [Streptococcus
salivarius K12]
Length = 296
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYAVKEGDVITYELPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H +D+ SSI+G +RPGIVHR+DK TSGLL++
Sbjct: 106 VNALMYHV----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMI 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ + K R Y+++ G G IE PI R +R + A
Sbjct: 142 AKNDKAHNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSDKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R+ V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFTVLERF--GNYTLVELQLETGRTHQ 229
>gi|225010881|ref|ZP_03701348.1| pseudouridine synthase, RluA family [Flavobacteria bacterium
MS024-3C]
gi|225004928|gb|EEG42883.1| pseudouridine synthase, RluA family [Flavobacteria bacterium
MS024-3C]
Length = 379
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 118/218 (54%), Gaps = 33/218 (15%)
Query: 26 SHNVKGGDMVNCTISEL-QPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGT 84
++ VK GD + + EDIPLD+VYED +++VVNKP MVVHP GN +GT
Sbjct: 103 NYKVKAGDQIKVMFTHPPYEFLLTPEDIPLDVVYEDSDLMVVNKPPGMVVHPGHGNYSGT 162
Query: 85 LVNGILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
L+N +L H LP ++ DE RPG+VHR+DK TSGLL
Sbjct: 163 LINALLFHVKDLP---------------LNADE-----------RPGLVHRIDKDTSGLL 196
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK + HL++QF T ER Y+++ G + G + I R P NR++MA P
Sbjct: 197 VVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVEEEQGTVRGHIGRHPKNRLQMAVFPDG 256
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ Q + A + YKV+E L G LV LETGRTHQ
Sbjct: 257 D---QGKEAVTHYKVMERL--GYVTLVSCVLETGRTHQ 289
>gi|288925171|ref|ZP_06419106.1| ribosomal large subunit pseudouridine synthase D [Prevotella buccae
D17]
gi|288337936|gb|EFC76287.1| ribosomal large subunit pseudouridine synthase D [Prevotella buccae
D17]
Length = 358
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 127/237 (53%), Gaps = 34/237 (14%)
Query: 10 QVSVLALFLSMDKLSVSHN--VKGGDMVNCTISELQ-PLRAEAEDIPLDIVYEDDNVLVV 66
Q + A F+ ++ V N V+ GD+V + + EDIPL +VYEDD ++V+
Sbjct: 56 QSAADAGFIRVNGRPVKSNYKVRPGDVVTLMLDRPKHDTSIVPEDIPLAVVYEDDGLMVI 115
Query: 67 NKPAHMVVHPAPGNATGTLVNGILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGA 125
NKPA MVVHP GN TGTL+N + ++ LPT +++ E
Sbjct: 116 NKPAGMVVHPGAGNFTGTLINAVAYYLKDLPTFDANSPEV-------------------- 155
Query: 126 SIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEV 185
G+VHR+DK TSGLLVVAK + L +QF T R Y +L G GRIE
Sbjct: 156 ----GLVHRIDKDTSGLLVVAKTPEAKTCLGKQFFNKTTHRSYNALVWGNIVDDEGRIEG 211
Query: 186 PISRDPNNRIRMAAI-PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
I+RDP NR+RM PGS G + A + Y+V+E G + LVE RLETGRTHQ
Sbjct: 212 NIARDPRNRLRMKVFAPGS---GIGKSAVTHYRVLERF--GYTTLVECRLETGRTHQ 263
>gi|395240816|ref|ZP_10417840.1| Pseudouridine synthase [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475598|emb|CCI87817.1| Pseudouridine synthase [Lactobacillus gigeriorum CRBIP 24.85]
Length = 311
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 124/220 (56%), Gaps = 32/220 (14%)
Query: 22 KLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNA 81
K S+ V D V + L+PL E E+IPLDI+YEDD+V+VVNKP MVVHP+ G+
Sbjct: 56 KEKASYKVILNDEVKVHVPALKPLSLEPENIPLDIIYEDDDVIVVNKPQGMVVHPSAGHP 115
Query: 82 TGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
TLVN +L+H ++ +SS G RPGIVHR+DK TSG
Sbjct: 116 DHTLVNALLYHT----------------------KDLASSPEG--FRPGIVHRIDKDTSG 151
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LL++AK + L Q +R+Y+++ G + +G+I+ PI R+P +R +MA +
Sbjct: 152 LLMIAKTPTARESLEYQLANKINKRLYLAIVHGNFGEEAGKIDAPIGRNPLDRKKMAVVE 211
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+HA + +KV+E G +L++ +LETGRTHQ
Sbjct: 212 ------NGKHAVTHFKVLEQYQ--GFSLIQCQLETGRTHQ 243
>gi|27382447|ref|NP_773976.1| pseudouridine synthase [Bradyrhizobium japonicum USDA 110]
gi|27355618|dbj|BAC52601.1| blr7336 [Bradyrhizobium japonicum USDA 110]
Length = 335
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 124/224 (55%), Gaps = 37/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+++V GD + + E P + E+I LDIV+EDD+++V+NKP +VVHPA G+ TGTL
Sbjct: 59 AYHVSHGDTIIIDVPEAAPAEPKGEEIALDIVFEDDDIIVINKPRGLVVHPAAGHETGTL 118
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC TL S I G RPGIVHRLDK T+GL+VV
Sbjct: 119 VNALIAHCG-STL---------------------SGIGGVR-RPGIVHRLDKDTTGLMVV 155
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++ +HA LS QF H + R Y++ GVP + G ++ PI R P R +MA
Sbjct: 156 AKNDLAHASLSAQFADHGRTGAMRRGYMAFAWGVPGRHRGTVDAPIDRHPYAREKMAVRQ 215
Query: 202 GSNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
G R A + ++++E G +AL+ LETGRTHQ
Sbjct: 216 GG------REAVTHWEILESFPGRDGKPIAALLACELETGRTHQ 253
>gi|418018315|ref|ZP_12657871.1| pseudouridine synthase [Streptococcus salivarius M18]
gi|345527164|gb|EGX30475.1| pseudouridine synthase [Streptococcus salivarius M18]
Length = 296
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYAVKEGDVITYELPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H +D+ SSI+G +RPGIVHR+DK TSGLL++
Sbjct: 106 VNALMYHV----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMI 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ + K R Y+++ G G IE PI R +R + A
Sbjct: 142 AKNDKAHNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSDKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R+ V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFTVLERF--GNYTLVELQLETGRTHQ 229
>gi|77462967|ref|YP_352471.1| ribosomal large subunit pseudouridine synthase D [Rhodobacter
sphaeroides 2.4.1]
gi|77387385|gb|ABA78570.1| ribosomal large subunit pseudouridine synthase D [Rhodobacter
sphaeroides 2.4.1]
Length = 349
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 124/226 (54%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V G + + + A E IPL +V+ED++++V++KP MVVHPAPG TGTLVN
Sbjct: 64 KVAEGQVYEIALDAPAEVEARPEAIPLSVVWEDEDLIVIDKPVGMVVHPAPGQWTGTLVN 123
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC E S I G RPGIVHR+DK TSGLLVVAK
Sbjct: 124 ALLHHCG----------------------ESLSGIGGEK-RPGIVHRIDKDTSGLLVVAK 160
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPG 202
+ +H L+ QF+ HT+ER Y++L GVP S R+ S +P +R+A A
Sbjct: 161 TDRAHQGLAAQFEAHTVERRYLALVHGVPEVSDPRLRGVRGTSFEPGGVLRIATGLARHR 220
Query: 203 SNKHGQA------RHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
+++ QA RHA +R +++E ALVE RLETGRTHQ
Sbjct: 221 TDRQRQAVTFEGGRHAVTRARLLERFGMPSVLALVECRLETGRTHQ 266
>gi|298292656|ref|YP_003694595.1| pseudouridine synthase [Starkeya novella DSM 506]
gi|296929167|gb|ADH89976.1| pseudouridine synthase, RluA family [Starkeya novella DSM 506]
Length = 348
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 114/200 (57%), Gaps = 37/200 (18%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDA 109
+DIPLDIV+EDD+++V++KPA +VVHPAPGN GTLVN +L HC
Sbjct: 90 QDIPLDIVFEDDDLIVIDKPAGLVVHPAPGNPDGTLVNALLFHCGA-------------- 135
Query: 110 EDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----TIE 165
S S G RPGIVHRLDK TSGL+VVAK++ +H L+ QF H +E
Sbjct: 136 ---------SLSGIGGVRRPGIVHRLDKDTSGLMVVAKNDRAHQKLAAQFADHGRTGPLE 186
Query: 166 RVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGG 225
R Y++ GVP SG ++ P++R P +R R+A R A + ++ +E
Sbjct: 187 RAYLAFVWGVPELPSGTVDAPLARHPVSRERIAV------RANGRFAITHWQRVEAYEDT 240
Query: 226 G----SALVEWRLETGRTHQ 241
++LVE +LETGRTHQ
Sbjct: 241 QGRPVASLVECQLETGRTHQ 260
>gi|294501002|ref|YP_003564702.1| pseudouridine synthase [Bacillus megaterium QM B1551]
gi|294350939|gb|ADE71268.1| pseudouridine synthase [Bacillus megaterium QM B1551]
Length = 304
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 123/216 (56%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ K GD + + EL+ L AE++ LDI YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 52 NYKCKTGDAIIIEVPELEELDVVAEEMDLDIYYEDQDVLVVNKPRGMVVHPAPGHHSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++ HC +D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 112 VNGLMAHC----------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ GV + G I+ PI RD +R M +
Sbjct: 148 AKNDLAHESLVSQLVAKTVTRRYKAIVHGVIAHDHGTIDAPIGRDKQDRQSMTVTDEN-- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R A + + V++ +LVE +LETGRTHQ
Sbjct: 206 ---SRDAVTHFTVLQRFK--DFSLVECKLETGRTHQ 236
>gi|284036309|ref|YP_003386239.1| pseudouridine synthase [Spirosoma linguale DSM 74]
gi|283815602|gb|ADB37440.1| pseudouridine synthase, RluA family [Spirosoma linguale DSM 74]
Length = 348
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 35/220 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRA---EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
S+ +K D++ T+S P R + E+IP++IV+EDD++LV+NKPA MVVHPA GN
Sbjct: 66 SYKIKPSDII--TVSLPHPPRETDLKPENIPINIVFEDDDLLVINKPAGMVVHPAHGNWD 123
Query: 83 GTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
GTLVN +++H +LPT S + E +RPG+VHR+DK TSG
Sbjct: 124 GTLVNALVYHFQNLPT--SRHGE----------------------VRPGLVHRIDKDTSG 159
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
L+V+AK E + +L+ QF HTIER Y +LT GVP+ G I I R +R ++ AI
Sbjct: 160 LMVIAKTEFAMTYLARQFFEHTIERTYNALTWGVPNPQIGTITGFIGRSIKDR-KVQAI- 217
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + + A + Y +E L G ALVE +LETGRTHQ
Sbjct: 218 -YDDESKGKWAVTHYTTLEDL--GYVALVECKLETGRTHQ 254
>gi|384215677|ref|YP_005606843.1| hypothetical protein BJ6T_19750 [Bradyrhizobium japonicum USDA 6]
gi|354954576|dbj|BAL07255.1| hypothetical protein BJ6T_19750 [Bradyrhizobium japonicum USDA 6]
Length = 335
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 123/224 (54%), Gaps = 37/224 (16%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+++V GD + + E P + EDI LDIV+EDD+++V+NKP +VVHPA G+ TGTL
Sbjct: 59 AYHVTSGDTITIDVPEAAPPEPKGEDIALDIVFEDDDIVVLNKPKGLVVHPAAGHETGTL 118
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN ++ HC S S G RPGIVHRLDK T+GL+VV
Sbjct: 119 VNALIAHCG-----------------------GSLSGIGGVRRPGIVHRLDKDTTGLMVV 155
Query: 146 AKDEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
AK++ +HA L+ QF H + R Y++ G+P + G ++ PI R P R +MA
Sbjct: 156 AKNDLAHASLTAQFADHGRTGAMRRGYMAFAWGLPGRHRGTVDAPIDRHPYAREKMAVRQ 215
Query: 202 GSNKHGQARHAASRYKVIEILAGGG----SALVEWRLETGRTHQ 241
G R A + ++++E AG ++L+ LETGRTHQ
Sbjct: 216 GG------RDAVTHWELLESFAGRDGKPIASLLACELETGRTHQ 253
>gi|325954148|ref|YP_004237808.1| pseudouridine synthase [Weeksella virosa DSM 16922]
gi|323436766|gb|ADX67230.1| pseudouridine synthase, RluA family [Weeksella virosa DSM 16922]
Length = 362
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 122/220 (55%), Gaps = 35/220 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAE---AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
++ VK GD + + P R AED+PL+IV+EDD VLV++KPA MVVHP GN +
Sbjct: 68 NYKVKPGDFIQIMLE--NPPREHKIIAEDLPLNIVFEDDQVLVIDKPAGMVVHPGHGNYS 125
Query: 83 GTLVNGI-LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSG 141
GTLVN + H +LP S+S RPG+VHR+DK TSG
Sbjct: 126 GTLVNALKFHFDNLP------------------------SMSAELERPGLVHRIDKDTSG 161
Query: 142 LLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIP 201
LLV+AK E + HL+ QF HT R Y +L G ++ G I I R +R++MA
Sbjct: 162 LLVIAKTEQAMNHLALQFANHTTTRKYNALVWGNVTEDEGTITGHIGRHLKDRMQMAVFE 221
Query: 202 GSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ Q +HA + YKV+E L+ LVE +LETGRTHQ
Sbjct: 222 DGS---QGKHAVTHYKVLERLS--YVTLVECQLETGRTHQ 256
>gi|387783586|ref|YP_006069669.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
gi|338744468|emb|CCB94834.1| pseudouridine synthase [Streptococcus salivarius JIM8777]
Length = 296
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYAVKEGDVITYELPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H +D+ SSI+G +RPGIVHR+DK TSGLL++
Sbjct: 106 VNALMYHV----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMI 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ + K R Y+++ G G IE PI R +R + A
Sbjct: 142 AKNDKAHNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSDKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R+ V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFTVLERF--GNYTLVELQLETGRTHQ 229
>gi|171913853|ref|ZP_02929323.1| pseudouridine synthase, RluA family protein [Verrucomicrobium
spinosum DSM 4136]
Length = 303
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 117/213 (54%), Gaps = 30/213 (14%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K GD + + + P +DIPL++++ED++++V+NKP +VVHPA GN GTLVN
Sbjct: 53 LKQGDRITMEVPDPVPTEVVPQDIPLNVLFEDEHIIVINKPDGLVVHPAAGNPDGTLVNA 112
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L HC + S G +RPGIVHRLDK TSG +V AK
Sbjct: 113 LLFHCK------------------------NLSGIGGELRPGIVHRLDKETSGCMVAAKH 148
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L+E F + ++Y++ +G PS SSGRIE I R P +R RMA + G
Sbjct: 149 DLAHTRLTEAFSQRDLTKIYLAAVNGTPSSSSGRIENRIGRHPVDRKRMALVTGE----A 204
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + + + + G AL+ RL TGRTHQ
Sbjct: 205 GKEALTEWDRVAVHQ--GCALIRCRLLTGRTHQ 235
>gi|419707197|ref|ZP_14234692.1| Pseudouridine synthase [Streptococcus salivarius PS4]
gi|383283078|gb|EIC81047.1| Pseudouridine synthase [Streptococcus salivarius PS4]
Length = 297
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 123/216 (56%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ VK GD++ + E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTL
Sbjct: 46 KYAVKEGDVITYELPEEEVLDYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H +D+ SSI+G +RPGIVHR+DK TSGLL+V
Sbjct: 106 VNALMYHV----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+ + K R Y+++ G G IE PI R +R + A
Sbjct: 142 AKNDKAHNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSDKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R+ V+E G LVE +LETGRTHQ
Sbjct: 197 -AKGKPAVTRFTVLERF--GNYTLVELQLETGRTHQ 229
>gi|257416242|ref|ZP_05593236.1| pseudouridylate synthase [Enterococcus faecalis ARO1/DG]
gi|257158070|gb|EEU88030.1| pseudouridylate synthase [Enterococcus faecalis ARO1/DG]
Length = 301
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 119/221 (53%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 45 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSAGH 104
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 105 PNGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 140
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK + +H L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 141 GLLMVAKSDQAHESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 200
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 201 EG------GKEAVTHFTVLERF--DTFTLVELQLETGRTHQ 233
>gi|395787283|ref|ZP_10466884.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
gi|395411707|gb|EJF78228.1| RluA family pseudouridine synthase [Bartonella birtlesii LL-WM9]
Length = 334
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 123/222 (55%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K ++ + L+ E I LDI++ED++V+V+NKPA +VVHP GN TGTLVN
Sbjct: 56 LKPNQIIELAMPILRDAEPCGEAIILDILFEDNDVIVINKPAGLVVHPGNGNWTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
++HHC S S G RPGIVHRLDK TSG++VVAK+
Sbjct: 116 LIHHCG-----------------------NSLSGIGGVKRPGIVHRLDKNTSGVMVVAKN 152
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+ +H LS QF H ++R Y +L G+P ++ I+ + R P NRI+ A + N
Sbjct: 153 DFAHKSLSAQFSDHGRTSALDRRYHALIWGIPHRNIWTIDASLGRSPYNRIKQAVV--HN 210
Query: 205 KHGQARHAASRYKVIEILAGGG-----SALVEWRLETGRTHQ 241
+H ARHA + + ++E ++L+E RLETGRTHQ
Sbjct: 211 QHAYARHAITHFSLLEKYGTYADTTPVASLIECRLETGRTHQ 252
>gi|300361720|ref|ZP_07057897.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri JV-V03]
gi|300354339|gb|EFJ70210.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
gasseri JV-V03]
Length = 304
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 125/218 (57%), Gaps = 32/218 (14%)
Query: 24 SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
VS+ V+ GD+++ T+ +PL EA+++ LDIVYED +V+VVNKP MVVHP+ G+
Sbjct: 49 KVSYKVQAGDLIDITVPPAKPLSLEAQNLNLDIVYEDADVIVVNKPQGMVVHPSAGHPDH 108
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVNG+L+H LA S E F RPGIVHR+DK TSGLL
Sbjct: 109 TLVNGLLYHTH--KLADS-PEGF---------------------RPGIVHRIDKDTSGLL 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
+VAK++ + L +Q +R Y+++ G +G I+ PI R+PNNR +MA P
Sbjct: 145 MVAKNDKARESLEKQLAEKINKREYLAIVHGNFETKNGVIDAPIGRNPNNRKQMAVNP-- 202
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A + + V+E +LV+ LETGRTHQ
Sbjct: 203 ----KGKAAVTHFTVLEQFK--DYSLVKCVLETGRTHQ 234
>gi|254477672|ref|ZP_05091058.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp. R11]
gi|214031915|gb|EEB72750.1| ribosomal large subunit pseudouridine synthase D [Ruegeria sp. R11]
Length = 344
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 128/226 (56%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ G ++ T+ E + EDIPL++++EDD+++V+NKPA MVVHPAPG +GTLVN
Sbjct: 59 RVEEGATISITVEEAEDSHIGPEDIPLEVIFEDDDLIVINKPAGMVVHPAPGTPSGTLVN 118
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC + S + G RPGIVHR+DK TSGLLVVAK
Sbjct: 119 ALLHHCG----------------------DNLSGVGGVK-RPGIVHRIDKETSGLLVVAK 155
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPG 202
+ +H L+ QF+ HT+ER Y ++ GVP + R+ S +P N +++ A
Sbjct: 156 SDAAHQGLAAQFEKHTVERYYRAVCYGVPDGNDPRLRGVKGASFEPGNILKLTTQLARHK 215
Query: 203 SNKHGQA------RHAASRYKVIEILAGGG-SALVEWRLETGRTHQ 241
+++ QA RHA +R ++++ AL+E LETGRTHQ
Sbjct: 216 TDRQKQAVLFQGGRHAITRARIVDSFGTPPVVALIECWLETGRTHQ 261
>gi|55820603|ref|YP_139045.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMG 18311]
gi|386086213|ref|YP_006002087.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
gi|55736588|gb|AAV60230.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus LMG 18311]
gi|312277926|gb|ADQ62583.1| Pseudouridine synthase [Streptococcus thermophilus ND03]
Length = 296
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 122/213 (57%), Gaps = 32/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK GD++ + E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN
Sbjct: 49 VKEGDVITYVLPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNA 108
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+++H +D+ SSI+G +RPGIVHR+DK TSGLL++AK+
Sbjct: 109 LMYHV----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAKN 144
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L+ + K R Y+++ G G IE PI R +R + A +
Sbjct: 145 DKAHNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSDKDRKKQAVT------AK 198
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A +R+ V+E G LVE +LETGRTHQ
Sbjct: 199 GKPAVTRFTVLERF--GNYTLVELQLETGRTHQ 229
>gi|339021492|ref|ZP_08645543.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter tropicalis NBRC 101654]
gi|338751473|dbj|GAA08847.1| ribosomal RNA large subunit 23S rRNA pseudouridine synthase D
[Acetobacter tropicalis NBRC 101654]
Length = 436
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 116/216 (53%), Gaps = 29/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ +V+ G + I P + E +P +I YEDD+++V+NKPA +VVHPAPGN TGTL
Sbjct: 163 AESVRAGMELVLHIPPATPAVPQGEAVPFEIFYEDDDLIVLNKPAGLVVHPAPGNETGTL 222
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++ HC E I G RPGIVHRLDK TSGL+V
Sbjct: 223 VNGLIAHCG----------------------ESLKGIGGER-RPGIVHRLDKDTSGLMVA 259
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK E +H LS+ F I+R Y++ G P+ + G E I RD +R RM
Sbjct: 260 AKTEKAHLALSDDFAARRIDRAYLAFCWGCPNPAEGDYEGDIGRDKRDRKRMTI----TT 315
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
HG + A + Y+ ++ G+ALV +L TGRTHQ
Sbjct: 316 HG-GKWALTHYRTLQAFE-MGAALVTCKLATGRTHQ 349
>gi|282896340|ref|ZP_06304362.1| Pseudouridine synthase, RluD [Raphidiopsis brookii D9]
gi|281198836|gb|EFA73715.1| Pseudouridine synthase, RluD [Raphidiopsis brookii D9]
Length = 323
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 131/243 (53%), Gaps = 41/243 (16%)
Query: 2 ELVELEFNQVSVLALFLSMDKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYE 59
+L+E + QV+ K+ S N+ GG+ + + +Q + A+DIPLDI+YE
Sbjct: 50 DLIEQGYVQVN--------GKVCYSKNITLDGGEYLEVEVPPVQAAQLVAQDIPLDILYE 101
Query: 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC-SLPTLASSNQEAFSDAEDISDDEEF 118
D+ +L++NKPA +VVHPAPG+ GTLV+ +L HC +LP +
Sbjct: 102 DEQLLILNKPAGLVVHPAPGHLEGTLVHALLAHCPNLPGI-------------------- 141
Query: 119 SSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQ 178
G RPGIVHRLDK T+G + +AK + ++ L Q + T R Y+ + G P
Sbjct: 142 -----GGVQRPGIVHRLDKDTTGAIAIAKTDIAYKQLQLQLQSKTARREYLGVVYGAPKS 196
Query: 179 SSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGR 238
SG +++PI R P R +MA +P R+A + + + E L G L+ ++LETGR
Sbjct: 197 ESGTMDLPIGRHPQQRKKMAIVPVEQG---GRNAITNWYIKERL--GNYTLIHFQLETGR 251
Query: 239 THQ 241
THQ
Sbjct: 252 THQ 254
>gi|193212389|ref|YP_001998342.1| RluA family pseudouridine synthase [Chlorobaculum parvum NCIB 8327]
gi|193085866|gb|ACF11142.1| pseudouridine synthase, RluA family [Chlorobaculum parvum NCIB
8327]
Length = 349
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 124/218 (56%), Gaps = 30/218 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK D ++ T L+P E EDIP+ I+YEDD+++V++K A MVVHPA GN TG
Sbjct: 71 NYRVKSCDHIHLTF--LRPPAPELAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTG 128
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TL N ILHH DA+++ E +RPGIVHRLDK TSGL+
Sbjct: 129 TLANAILHHLG------------KDADELDKTE----------MRPGIVHRLDKDTSGLI 166
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK+ + L+ QF +E+VY ++ GVP SG I+ I R NR MA P
Sbjct: 167 IIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKAESGTIKTNIGRSHKNRKVMANFPYE 226
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G +HA + Y+V+E L G +L++ L TGRTHQ
Sbjct: 227 GAEG--KHAITDYQVVEDL--GYFSLMDVTLHTGRTHQ 260
>gi|228471651|ref|ZP_04056425.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
gingivalis ATCC 33624]
gi|228277070|gb|EEK15756.1| ribosomal large subunit pseudouridine synthase D [Capnocytophaga
gingivalis ATCC 33624]
Length = 343
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 124/232 (53%), Gaps = 41/232 (17%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISE------LQPLRAEAEDIPLDIVYEDDNVLVVNKP 69
+F++ + +H VK D V + L P E IPLDIVYED+ ++++NKP
Sbjct: 54 IFVNGVAVKANHRVKANDEVKVMFAHPPHEYLLVP-----EPIPLDIVYEDEELIIINKP 108
Query: 70 AHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRP 129
A +VVHP GN GTL+NG+++H + SS+ RP
Sbjct: 109 AGLVVHPGHGNYQGTLINGLIYHFQHLPMNSSD-------------------------RP 143
Query: 130 GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISR 189
G+VHR+DK TSGLLVVAK E + HL++QF T ER Y++L G +Q G I I R
Sbjct: 144 GLVHRIDKDTSGLLVVAKTEEAMNHLAKQFFNKTSEREYVALVWGNLAQDEGTIIGHIGR 203
Query: 190 DPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
P NR++M P + + + A + YKV+E G +V RLETGRTHQ
Sbjct: 204 HPKNRLQMTVFPDGS---EGKEAITHYKVLERF--GYVTIVSCRLETGRTHQ 250
>gi|373495389|ref|ZP_09585974.1| hypothetical protein HMPREF0380_01612 [Eubacterium infirmum F0142]
gi|371964867|gb|EHO82371.1| hypothetical protein HMPREF0380_01612 [Eubacterium infirmum F0142]
Length = 315
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 119/216 (55%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ +K GD + S +AE+ L+I+YED++++V++KP MVVHP GN TL
Sbjct: 58 KYKIKAGDSIEVYFSVEDEYIPKAENKELNIIYEDEDIIVIDKPRGMVVHPGAGNYNSTL 117
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +LHH ED+ + G + RPGIVHR+DK TSG+LVV
Sbjct: 118 VNALLHHV---------------GEDLRE--------LGEADRPGIVHRIDKDTSGILVV 154
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK + + L EQF H+I+R Y +L SG+I+ PI RD NR+R AI G N
Sbjct: 155 AKSKLAFDSLKEQFSKHSIKRWYYALVYNNFGDDSGKIDRPIGRDKKNRLRR-AIDGEN- 212
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A +RY+V+E G L++ LETGRTHQ
Sbjct: 213 ---PKRAITRYEVMERF--GNVVLIKAILETGRTHQ 243
>gi|3915406|sp|O50310.1|Y723_CHLP8 RecName: Full=Uncharacterized RNA pseudouridine synthase Cpar_0723;
AltName: Full=RNA pseudouridylate synthase; AltName:
Full=RNA-uridine isomerase
gi|2661852|emb|CAB06297.1| hypothetical protein [Prosthecochloris vibrioformis]
Length = 327
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 124/218 (56%), Gaps = 30/218 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK D ++ T L+P E EDIP+ I+YEDD+++V++K A MVVHPA GN TG
Sbjct: 49 NYRVKSCDHIHLTF--LRPPAPELAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTG 106
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TL N ILHH DA+++ E +RPGIVHRLDK TSGL+
Sbjct: 107 TLANAILHHLG------------KDADELDKTE----------MRPGIVHRLDKDTSGLI 144
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++AK+ + L+ QF +E+VY ++ GVP SG I+ I R NR MA P
Sbjct: 145 IIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKAESGTIKTNIGRSHKNRKVMANFPYE 204
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G +HA + Y+V+E L G +L++ L TGRTHQ
Sbjct: 205 GAEG--KHAITDYQVVEDL--GYFSLMDVTLHTGRTHQ 238
>gi|384920205|ref|ZP_10020220.1| ribosomal large subunit pseudouridine synthase D [Citreicella sp.
357]
gi|384465912|gb|EIE50442.1| ribosomal large subunit pseudouridine synthase D [Citreicella sp.
357]
Length = 341
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 124/231 (53%), Gaps = 44/231 (19%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V GD ++ + E + EDIPL IV+ED +++VVNKP MVVHPAPG TGTLVN
Sbjct: 58 RVSEGDEIDIILPEPEASHIGPEDIPLGIVWEDPDLVVVNKPVGMVVHPAPGTPTGTLVN 117
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGAS--IRPGIVHRLDKGTSGLLVV 145
+LHH F +SG RPGIVHR+DK TSGLLVV
Sbjct: 118 ALLHH-------------------------FGGELSGVGGVARPGIVHRIDKDTSGLLVV 152
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRI--EVPISRDPNNRIRMAAIPGS 203
AK + +H L+ QF+ H+ +R Y+++ GVP R+ +S +P + I + + G
Sbjct: 153 AKSDRAHHGLAAQFEAHSADRAYLAICHGVPDAGDPRLLGTRGVSMEPGSVILIQS--GL 210
Query: 204 NKH------------GQARHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
+H GQ RHA +R +V+E + ALVE RLETGRTHQ
Sbjct: 211 ARHRTDRQRQAVYFDGQGRHAITRARVLEHFGTPAALALVECRLETGRTHQ 261
>gi|328948139|ref|YP_004365476.1| RluA family pseudouridine synthase [Treponema succinifaciens DSM
2489]
gi|328448463|gb|AEB14179.1| pseudouridine synthase, RluA family [Treponema succinifaciens DSM
2489]
Length = 326
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 126/230 (54%), Gaps = 20/230 (8%)
Query: 13 VLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHM 72
++ + ++ K +S VK D+++ E P E E+IPLD +YED+NV VVNK M
Sbjct: 38 IVCIQVNGKKQKISCQVKANDIIDIQWEENVPDNIEPENIPLDTIYEDENVCVVNKKQGM 97
Query: 73 VVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 132
V HPA GN GTLVN +L+H E I + +E S ++ RPGIV
Sbjct: 98 VTHPAAGNWKGTLVNALLYHWG--------------RESIPELKEGQVSKILSNRRPGIV 143
Query: 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLH-TIERVYISLTSGVPSQSSGRIEVPISRDP 191
HRLDK TSG+++ AK+ + LS QF+ H +I + YI++ G P G I+ I RDP
Sbjct: 144 HRLDKETSGIIITAKNHDTEEFLSAQFRNHSSIVKEYIAICIGRPQHQHGIIQTNIIRDP 203
Query: 192 NNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R R A+ G+ + + A S Y+ I G +L++ R+ TGRTHQ
Sbjct: 204 KERKRFKAVVGTE---EGKPAESYYECISCY--GEYSLMKVRINTGRTHQ 248
>gi|225868421|ref|YP_002744369.1| RNA pseudouridylate synthase [Streptococcus equi subsp.
zooepidemicus]
gi|225701697|emb|CAW99033.1| putative RNA pseudouridylate synthase [Streptococcus equi subsp.
zooepidemicus]
Length = 296
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 32/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
V+ GD ++ I E L +A+DIPLDIVY+DD + ++NKP MVVHP+ G++TGTLVN
Sbjct: 49 VQVGDCISYHIPEESSLDYQAQDIPLDIVYQDDVLAIINKPQGMVVHPSAGHSTGTLVNA 108
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+L+H +D+ SSI+G IRPGIVHR+DK TSGLL+VAK
Sbjct: 109 LLYHV----------------KDL-------SSINGV-IRPGIVHRIDKDTSGLLMVAKT 144
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L+++ K R Y+++ G + G IE PI R +R + +
Sbjct: 145 DKAHQLLADELKAKKSLRKYVAIVHGNLPKDRGVIEAPIGRSDKDRKKQTVT------AK 198
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A +R+KV+E G +LVE +LETGRTHQ
Sbjct: 199 GKEALTRFKVLERF--GRYSLVELQLETGRTHQ 229
>gi|332557842|ref|ZP_08412164.1| ribosomal large subunit pseudouridine synthase D [Rhodobacter
sphaeroides WS8N]
gi|332275554|gb|EGJ20869.1| ribosomal large subunit pseudouridine synthase D [Rhodobacter
sphaeroides WS8N]
Length = 349
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 124/226 (54%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V G + + + A E IPL +V+ED++++V++KP MVVHPAPG TGTLVN
Sbjct: 64 KVAEGQVYEIALDAPAEVEARPEAIPLSVVWEDEDLIVIDKPVGMVVHPAPGQWTGTLVN 123
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC E S I G RPGIVHR+DK TSGLLVVAK
Sbjct: 124 ALLHHCG----------------------ESLSGIGGEK-RPGIVHRIDKDTSGLLVVAK 160
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPG 202
+ +H L+ QF+ HT+ER Y++L GVP S R+ S +P +R+A A
Sbjct: 161 TDRAHQGLAAQFEAHTVERRYLALVHGVPEVSDPRLRGVRGTSFEPGGVLRIATGLARHR 220
Query: 203 SNKHGQA------RHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
+++ QA RHA +R +++E ALVE RLETGRTHQ
Sbjct: 221 TDRQRQAVTFEGGRHAVTRARLLERFGMPSVLALVECRLETGRTHQ 266
>gi|445373337|ref|ZP_21426283.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5460]
gi|445388250|ref|ZP_21428000.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5461]
gi|444750805|gb|ELW75594.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5461]
gi|444750959|gb|ELW75739.1| Pseudouridine synthase [Streptococcus thermophilus MTCC 5460]
Length = 296
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 121/213 (56%), Gaps = 32/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK GD++ E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN
Sbjct: 49 VKEGDVITYVFPEEEVLEYKAEDIPLDIIYEDTDVAVVNKPQGMVVHPSAGHTSGTLVNA 108
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+++H +D+ SSI+G +RPGIVHR+DK TSGLL++AK+
Sbjct: 109 LMYHV----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAKN 144
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L+ + K R Y+++ G G IE PI R +R + A +
Sbjct: 145 DKAHNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSDKDRKKQAVT------AK 198
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A +R+ V+E G LVE +LETGRTHQ
Sbjct: 199 GKPAVTRFTVLERF--GNYTLVELQLETGRTHQ 229
>gi|429206621|ref|ZP_19197886.1| Ribosomal large subunit pseudouridine synthase D [Rhodobacter sp.
AKP1]
gi|428190381|gb|EKX58928.1| Ribosomal large subunit pseudouridine synthase D [Rhodobacter sp.
AKP1]
Length = 322
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 124/226 (54%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V G + + + A E IPL +V+ED++++V++KP MVVHPAPG TGTLVN
Sbjct: 37 KVAEGQVYEIALDAPAEVEARPEAIPLSVVWEDEDLIVIDKPVGMVVHPAPGQWTGTLVN 96
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC E S I G RPGIVHR+DK TSGLLVVAK
Sbjct: 97 ALLHHCG----------------------ESLSGIGGEK-RPGIVHRIDKDTSGLLVVAK 133
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPG 202
+ +H L+ QF+ HT+ER Y++L GVP S R+ S +P +R+A A
Sbjct: 134 TDRAHQGLAAQFEAHTVERRYLALVHGVPEVSDPRLRGVRGTSFEPGGVLRIATGLARHR 193
Query: 203 SNKHGQA------RHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
+++ QA RHA +R +++E ALVE RLETGRTHQ
Sbjct: 194 TDRQRQAVTFEGGRHAVTRARLLERFGTPPVLALVECRLETGRTHQ 239
>gi|381209825|ref|ZP_09916896.1| hypothetical protein LGrbi_07866 [Lentibacillus sp. Grbi]
Length = 302
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 122/219 (55%), Gaps = 32/219 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNAT 82
+ ++ + GD++ T+ E L E+IPL I+YED +++V+NKP MVVHP+ G+
Sbjct: 48 VKANYKCQNGDVIEWTVPEPDTLNVVPENIPLSIIYEDSDLMVINKPKGMVVHPSAGHQH 107
Query: 83 GTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGL 142
GTLVN +L+HC S S+ RPGIVHR+DK TSGL
Sbjct: 108 GTLVNALLYHCD------------------------SLSLVNGEERPGIVHRIDKDTSGL 143
Query: 143 LVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPG 202
LVVAK++ +H L+EQ I+R Y ++ GV +G I+ PI RD N+R +M G
Sbjct: 144 LVVAKNDQTHTILAEQLAAKDIDRRYEAIVHGVIEHETGMIDAPIGRDRNDRKKM----G 199
Query: 203 SNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
++G+A A + ++V+ VE +LETGRTHQ
Sbjct: 200 VGENGKA--AVTHFRVLTRYK--NFTHVECQLETGRTHQ 234
>gi|113475517|ref|YP_721578.1| ribosomal large subunit pseudouridine synthase D [Trichodesmium
erythraeum IMS101]
gi|110166565|gb|ABG51105.1| ribosomal large subunit pseudouridine synthase D [Trichodesmium
erythraeum IMS101]
Length = 316
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 111/194 (57%), Gaps = 29/194 (14%)
Query: 48 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 107
EA DIPLDI+YEDD +L++NKPA +VVHPAPG++ GTLVN +L HC
Sbjct: 79 EANDIPLDILYEDDALLIINKPAGLVVHPAPGHSEGTLVNALLAHCD------------- 125
Query: 108 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERV 167
S + G RPGIVHRLDK T+G ++VAK +H++ HL Q + T R
Sbjct: 126 -----------SLAGIGGVQRPGIVHRLDKDTTGAIMVAKTDHAYQHLQAQLQAKTARRE 174
Query: 168 YISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGS 227
Y+ + G P SG I +PI R +R +MA P + A + ++V E L G
Sbjct: 175 YLGVVYGSPKTDSGIINLPIGRHRVDRKKMAVTPVERG---GKIAVTHWEVKERL--GNF 229
Query: 228 ALVEWRLETGRTHQ 241
+++ +RLETGRTHQ
Sbjct: 230 SMILFRLETGRTHQ 243
>gi|383450573|ref|YP_005357294.1| 23S rRNA pseudouridine synthase [Flavobacterium indicum GPTSA100-9]
gi|380502195|emb|CCG53237.1| Probable 23S rRNA pseudouridine synthase [Flavobacterium indicum
GPTSA100-9]
Length = 344
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 122/218 (55%), Gaps = 33/218 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLR--AEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATG 83
++ VK D+V + E P + E+IP+DIVYED+ VLVVNKPA MVVHP GN +G
Sbjct: 66 NYKVKPNDVVRVML-EHPPYEHLLKGENIPIDIVYEDEQVLVVNKPAGMVVHPGHGNYSG 124
Query: 84 TLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLL 143
TLVN + +H F + +S RPG+VHR+DK TSGLL
Sbjct: 125 TLVNALAYH-------------------------FDNLPMNSSERPGLVHRIDKDTSGLL 159
Query: 144 VVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
VVAK EH+ HL++QF T ER Y+++ G + G IE I R NR++MA P
Sbjct: 160 VVAKTEHAMNHLTKQFAEKTSEREYVAIVWGNIEEEEGTIEGNIDRHQTNRMQMAVYPDG 219
Query: 204 NKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K + A + YKVIE L G +V +LETGRTHQ
Sbjct: 220 EK---GKPAVTHYKVIERL--GYVTVVSCKLETGRTHQ 252
>gi|126461841|ref|YP_001042955.1| RluA family pseudouridine synthase [Rhodobacter sphaeroides ATCC
17029]
gi|126103505|gb|ABN76183.1| ribosomal large subunit pseudouridine synthase D [Rhodobacter
sphaeroides ATCC 17029]
Length = 349
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 124/226 (54%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V G + + + A E IPL +V+ED++++V++KP MVVHPAPG TGTLVN
Sbjct: 64 KVAEGQVYEIALDAPAEVEARPEAIPLSVVWEDEDLIVIDKPVGMVVHPAPGQWTGTLVN 123
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC E S I G RPGIVHR+DK TSGLLVVAK
Sbjct: 124 ALLHHCG----------------------ESLSGIGGEK-RPGIVHRIDKDTSGLLVVAK 160
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPG 202
+ +H L+ QF+ HT+ER Y++L GVP S R+ S +P +R+A A
Sbjct: 161 TDRAHQGLAAQFEAHTVERRYLALVHGVPEVSDPRLRGVRGTSFEPGGVLRIATGLARHR 220
Query: 203 SNKHGQA------RHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
+++ QA RHA +R +++E ALVE RLETGRTHQ
Sbjct: 221 TDRQRQAVTFEGGRHAVTRARLLERFGTPPVLALVECRLETGRTHQ 266
>gi|337287215|ref|YP_004626688.1| RluA family pseudouridine synthase [Thermodesulfatator indicus DSM
15286]
gi|335360043|gb|AEH45724.1| pseudouridine synthase, RluA family [Thermodesulfatator indicus DSM
15286]
Length = 312
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 126/217 (58%), Gaps = 34/217 (15%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAED-IPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
H +K G+++ + +PL + E+ +P +I+YED ++ V+NKP +VVHP G+ GTL
Sbjct: 57 HKIKAGEIIEVFVPAPKPLEIKPEEEVPFEILYEDKHLAVINKPPGVVVHPGAGHYEGTL 116
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
V+G+L + +D+S G +RPGIVHRLDK TSGLLVV
Sbjct: 117 VHGLL----------------ARLKDLSG--------IGGELRPGIVHRLDKDTSGLLVV 152
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AKD+ +H L++ FK I+++Y++L GVP S+G+IE PI R P NR +M+
Sbjct: 153 AKDDKTHQALTQMFKDREIKKIYLALVHGVPRLSAGKIEKPIGRHPVNRQKMSV------ 206
Query: 206 HGQ-ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
H + R A + Y+V E +AL+E +TGRTHQ
Sbjct: 207 HAKTGREALTFYRVRERFP--KAALLEVEPKTGRTHQ 241
>gi|295706351|ref|YP_003599426.1| pseudouridine synthase [Bacillus megaterium DSM 319]
gi|294804010|gb|ADF41076.1| pseudouridine synthase [Bacillus megaterium DSM 319]
Length = 304
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 123/216 (56%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ K GD + + EL+ L AE++ LDI YED +VLVVNKP MVVHPAPG+ +GTL
Sbjct: 52 NYKCKTGDAIIIEVPELEELDVVAEEMDLDIYYEDQDVLVVNKPRGMVVHPAPGHHSGTL 111
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG++ HC +D+ S I+G +RPGIVHR+DK TSGLL+V
Sbjct: 112 VNGLMAHC----------------KDL-------SGINGV-MRPGIVHRIDKDTSGLLMV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L Q T+ R Y ++ G+ + G I+ PI RD +R M +
Sbjct: 148 AKNDLAHESLVSQLVAKTVTRRYKAIVHGIIAHDHGTIDAPIGRDKQDRQSMTVTDEN-- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+R A + + V++ +LVE +LETGRTHQ
Sbjct: 206 ---SRDAVTHFTVLQRFK--DFSLVECKLETGRTHQ 236
>gi|421860326|ref|ZP_16292457.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
gi|410830074|dbj|GAC42894.1| pseudouridylate synthase [Paenibacillus popilliae ATCC 14706]
Length = 324
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 130/234 (55%), Gaps = 33/234 (14%)
Query: 10 QVSVLALFLSMDKLSVSHNVK--GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVN 67
Q+ + +L ++ SV N K GD + I E IPL + YED +V+V+N
Sbjct: 54 QLWIRDAYLLVNGRSVKPNYKIGAGDEMELRIPAPTATDIVPEAIPLHVYYEDADVIVIN 113
Query: 68 KPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASI 127
KP MVVHPAPG+ + T+VN ++HHCS D+S I+G +
Sbjct: 114 KPRGMVVHPAPGHLSETVVNALMHHCS----------------DLS-------GING-EL 149
Query: 128 RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPI 187
RPGIVHR+DK TSGLL+ AK++ +H L+ Q K HT+ R Y +L G + G I+ PI
Sbjct: 150 RPGIVHRIDKDTSGLLMAAKNDRAHTELAAQLKAHTVLRKYKALVHGNLAHDQGTIDAPI 209
Query: 188 SRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
RDP++R +M A+ N ++ A + ++V E G LVE +LETGRTHQ
Sbjct: 210 GRDPHDR-KMFAVTDRN----SKRAVTHFQVAERF--GDVTLVELQLETGRTHQ 256
>gi|221638823|ref|YP_002525085.1| Ribosomal large subunit pseudouridine synthase D [Rhodobacter
sphaeroides KD131]
gi|221159604|gb|ACM00584.1| Ribosomal large subunit pseudouridine synthase D [Rhodobacter
sphaeroides KD131]
Length = 322
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 124/226 (54%), Gaps = 35/226 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V G + + + A E IPL +V+ED++++V++KP MVVHPAPG TGTLVN
Sbjct: 37 KVAEGQVYEIALDAPAEVEARPEAIPLSVVWEDEDLIVIDKPVGMVVHPAPGQWTGTLVN 96
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
+LHHC E S I G RPGIVHR+DK TSGLLVVAK
Sbjct: 97 ALLHHCG----------------------ESLSGIGGEK-RPGIVHRIDKDTSGLLVVAK 133
Query: 148 DEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPG 202
+ +H L+ QF+ HT+ER Y++L GVP S R+ S +P +R+A A
Sbjct: 134 TDRAHQGLAAQFEAHTVERRYLALVHGVPEVSDPRLRGVRGTSFEPGGVLRIATGLARHR 193
Query: 203 SNKHGQA------RHAASRYKVIEILAGGGS-ALVEWRLETGRTHQ 241
+++ QA RHA +R +++E ALVE RLETGRTHQ
Sbjct: 194 TDRQRQAVTFEGGRHAVTRARLLERFGMPPVLALVECRLETGRTHQ 239
>gi|315498779|ref|YP_004087583.1| RluA family pseudouridine synthase [Asticcacaulis excentricus CB
48]
gi|315416791|gb|ADU13432.1| pseudouridine synthase, RluA family [Asticcacaulis excentricus CB
48]
Length = 334
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 111/196 (56%), Gaps = 30/196 (15%)
Query: 48 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 107
EA+++PL+++YED +++VVNKPA M HPAPG A GTLVN +L HC
Sbjct: 90 EAQNLPLEVLYEDAHLIVVNKPAGMAAHPAPGTADGTLVNALLFHCG------------- 136
Query: 108 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERV 167
E S I G +RPGIVHRLDK TSG++V AK + +H LSE F H I+R
Sbjct: 137 ---------ESLSGIGGV-LRPGIVHRLDKDTSGVMVAAKSDAAHRGLSELFSRHDIDRA 186
Query: 168 YISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGG- 226
Y +L G P +SG + I R P++R +MA + K G R A S Y+ + G
Sbjct: 187 YEALVRGAPKTASGTVTTRIGRSPHDRKKMAVL----KSG-GREAISHYRTLNSFGGEKP 241
Query: 227 -SALVEWRLETGRTHQ 241
+A V LETGRTHQ
Sbjct: 242 VAARVRCTLETGRTHQ 257
>gi|218661228|ref|ZP_03517158.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D
[Rhizobium etli IE4771]
Length = 260
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 118/203 (58%), Gaps = 34/203 (16%)
Query: 48 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 107
+ EDIPLDI +EDD+++V++KPA +VVHP PGN TGTLVN +++HC
Sbjct: 3 QGEDIPLDIFHEDDDIIVISKPAGLVVHPGPGNWTGTLVNALIYHCG------------- 49
Query: 108 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----T 163
+ S I G RPGIVHRLDK T+G++VVAK++ +H HLS QF H
Sbjct: 50 ---------DTLSGIGGVR-RPGIVHRLDKDTTGVMVVAKNDVAHRHLSLQFADHGRTMP 99
Query: 164 IERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEIL- 222
+ER Y ++ G P +G ++ P+ R +R R A+ + H A A + Y+VIE
Sbjct: 100 LERAYQAIVWGRPRSLTGTVDAPLGRATGDRTRR-AVKRPDSH-DADEAITHYEVIERFH 157
Query: 223 ----AGGGSALVEWRLETGRTHQ 241
A +ALVE RLETGRTHQ
Sbjct: 158 ETPDATALAALVECRLETGRTHQ 180
>gi|338813367|ref|ZP_08625496.1| pseudouridine synthase, RluA family protein [Acetonema longum DSM
6540]
gi|337274726|gb|EGO63234.1| pseudouridine synthase, RluA family protein [Acetonema longum DSM
6540]
Length = 308
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 122/216 (56%), Gaps = 31/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++V+ GD + + + + E+IPLDI+YEDD+V+V+NKP MVVHPA GN GTL
Sbjct: 55 KYSVQSGDTIEVIVPKTRSCAILPEEIPLDILYEDDSVIVINKPRGMVVHPAAGNFQGTL 114
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L HC D+ S I+G +RPGIVHRLDK TSG++V
Sbjct: 115 VNALLDHC----------------RDL-------SGINGV-VRPGIVHRLDKDTSGVMVA 150
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L++Q + R Y ++ G + G + PI R P +R +MA +P ++K
Sbjct: 151 AKNDTAHLDLADQIQKRIAGRKYFAVVWGNIKEEQGVVNAPIGRHPADRKKMAVVPINSK 210
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
A + ++++E L+E +LETGRTHQ
Sbjct: 211 -----PAVTHFRILERFR--NFTLIECKLETGRTHQ 239
>gi|417810294|ref|ZP_12456973.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius GJ-24]
gi|335349090|gb|EGM50590.1| ribosomal large subunit pseudouridine synthase D [Lactobacillus
salivarius GJ-24]
Length = 298
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 33/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
D ++ V GD + E++ L E E+IPLDIVYEDD+V+VVNKP MVVHP+PG+
Sbjct: 44 DVKKANYKVNLGDEITFDKPEVKKLSLEPENIPLDIVYEDDDVIVVNKPQGMVVHPSPGH 103
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TLVN +L+H L S+I+G + RPGIVHR+DK TS
Sbjct: 104 FEHTLVNALLYHSPL------------------------STING-TYRPGIVHRIDKDTS 138
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L++Q K T R Y++L G + SG I+ P+ R +R + A +
Sbjct: 139 GLLMVAKNDMAHQSLAKQLKDKTNIREYVALVHGNIKEDSGTIDAPLGRSKVDRKKQAVV 198
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + ++V++ G LV+ LETGRTHQ
Sbjct: 199 K------DGRNAVTHFEVLK--RYGDYTLVKCVLETGRTHQ 231
>gi|421893908|ref|ZP_16324400.1| pseudouridine synthase, RluA family protein [Pediococcus
pentosaceus IE-3]
gi|385273069|emb|CCG89772.1| pseudouridine synthase, RluA family protein [Pediococcus
pentosaceus IE-3]
Length = 294
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 117/215 (54%), Gaps = 33/215 (15%)
Query: 27 HNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLV 86
H V D+++ T+ + + + E + LDIV+EDD+V+VVNKP MVVHPAPG+ GTLV
Sbjct: 46 HKVSENDVIDVTLPDPVEVSVKPEKMNLDIVFEDDDVIVVNKPQGMVVHPAPGHENGTLV 105
Query: 87 NGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVA 146
NG+L H L T+ +RPGIVHR+DK TSGLL+VA
Sbjct: 106 NGLLDHAPLATV-------------------------NGELRPGIVHRIDKDTSGLLMVA 140
Query: 147 KDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKH 206
K++ + LS Q K T +R Y+++ G + +G I PI R +R +MA +
Sbjct: 141 KNDQAMLSLSAQLKAKTNQRKYLAIVHGNFKEEAGTINAPIGRSKKDRKKMAIVE----- 195
Query: 207 GQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + +KV+E L+E LETGRTHQ
Sbjct: 196 -DGRPAVTHFKVLERFT--DYTLIECELETGRTHQ 227
>gi|341820394|emb|CCC56664.1| pseudouridylate synthase [Weissella thailandensis fsh4-2]
Length = 304
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 121/216 (56%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ V+ D+++ + E L + E++PLDIVYEDD++LVVNKP MVVHPA G+ GTL
Sbjct: 50 NYKVRPDDVISFVVPEPVTLDLKPENLPLDIVYEDDDLLVVNKPQGMVVHPAAGHPNGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H L SSI+G +RPGIVHR+DK TSGLL+V
Sbjct: 110 VNALMYHTDL------------------------SSINGV-VRPGIVHRIDKDTSGLLMV 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS K R Y +L G S++ G I+ P+ R NR + A I G
Sbjct: 145 AKNDQAHEALSSDLKNKKNLRQYYALVHGEFSENKGTIKAPLGRSKTNRKKQAVIAG--- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V++ G L+ LETGRTHQ
Sbjct: 202 ---GRDAVTHFEVVKRYV--GYTLLRVTLETGRTHQ 232
>gi|241896496|ref|ZP_04783792.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
gi|241870218|gb|EER73969.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
Length = 304
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 120/216 (55%), Gaps = 33/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ V GD+++ + E L + E++PLDIVYEDD++LVVNKP MVVHPA G+ GTL
Sbjct: 50 KYKVHAGDVISFVVPEPVVLDIKPENLPLDIVYEDDDLLVVNKPQGMVVHPAAGHPNGTL 109
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H L SSI+G IRPGIVHR+DK TSGLL+V
Sbjct: 110 VNALMYHTEL------------------------SSINGV-IRPGIVHRIDKDTSGLLMV 144
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS K R Y +L G S++ G I+ P+ R +R + A I G
Sbjct: 145 AKNDQAHEALSADLKDKKNLRQYYALVHGEFSENKGTIKAPLGRSKTDRKKQAVIAG--- 201
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + ++V++ G L+ LETGRTHQ
Sbjct: 202 ---GRDAVTHFEVVKRYV--GYTLLRVTLETGRTHQ 232
>gi|430745597|ref|YP_007204726.1| RluA family pseudouridine synthase [Singulisphaera acidiphila DSM
18658]
gi|430017317|gb|AGA29031.1| pseudouridine synthase, RluA family [Singulisphaera acidiphila DSM
18658]
Length = 336
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 129/233 (55%), Gaps = 33/233 (14%)
Query: 11 VSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPA 70
+ A+ ++ S+ V+ D + + EL E+IPL +VYED+ + VVNKP
Sbjct: 43 IDAKAVLINGQPTKASYKVRLDDEIRVWLPELADEAPIPEEIPLQVVYEDEALTVVNKPP 102
Query: 71 HMVVHPAPGNATGTLVNGI-LHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRP 129
MVVHPA G+ +GTLVN + H+ +L T+A N RP
Sbjct: 103 RMVVHPAKGHWSGTLVNALQFHYDTLSTVAGEN-------------------------RP 137
Query: 130 GIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISR 189
GIVHRLD+ T+GLL+VAKD+ +H +L++QF+ T+ + Y+++ SGVPS+ S IE PI
Sbjct: 138 GIVHRLDRDTTGLLLVAKDDLAHRNLAKQFEQRTVRKEYLAIVSGVPSRDSDYIEKPIGF 197
Query: 190 DPNNRIRMA-AIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
P NR +MA +P A+ A + Y+V+E G A + + TGRTHQ
Sbjct: 198 HPTNREKMAIRLPEDG----AKEAVTFYEVLERF--DGFAYIRCKPRTGRTHQ 244
>gi|55822493|ref|YP_140934.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus CNRZ1066]
gi|55738478|gb|AAV62119.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
thermophilus CNRZ1066]
Length = 292
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 122/213 (57%), Gaps = 32/213 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
VK GD++ + E + L +AEDIPLDI+YED +V VVNKP MVVHP+ G+ +GTLVN
Sbjct: 49 VKEGDVITYVLPEEEVLEYKAEDIPLDIIYEDADVAVVNKPQGMVVHPSAGHTSGTLVNA 108
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+++H +D+ SSI+G +RPGIVHR+DK TSGLL++AK+
Sbjct: 109 LMYHV----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMIAKN 144
Query: 149 EHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQ 208
+ +H L+ + K R Y+++ G G IE PI R +R + A +
Sbjct: 145 DKAHNALAAELKDKKSLRKYVAIVHGNLPNDRGVIEAPIGRSDKDRKKQAVT------AK 198
Query: 209 ARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A +R+ V+E G LVE +LETGRTHQ
Sbjct: 199 GKPAVTRFTVLERF--GNYTLVELQLETGRTHQ 229
>gi|390935099|ref|YP_006392604.1| RluA family pseudouridine synthase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570600|gb|AFK87005.1| pseudouridine synthase, RluA family [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 306
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 129/216 (59%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K GD ++ I E + + + E+IPLDI+YEDD+++VVNKP MVVHPAPGN +GTL
Sbjct: 54 NYKIKEGDTIDVNIPEAEEIDLKPENIPLDIIYEDDDIIVVNKPQGMVVHPAPGNLSGTL 113
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L+HC+ L+ N E +RPGIVHRLDK TSG++VV
Sbjct: 114 VNALLYHCT--NLSGINGE----------------------LRPGIVHRLDKDTSGVMVV 149
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H LS Q K TI + Y+++ GV G +E PI RD R +MA +
Sbjct: 150 AKNDKAHLELSNQIKNRTILKKYLAIVEGVIKSDEGAVEAPIGRDHIERKKMAVVK---- 205
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R+A + Y+V+E ++LVE ++TGRTHQ
Sbjct: 206 --DGRYALTLYRVLERYK--NNSLVEAVIKTGRTHQ 237
>gi|386319539|ref|YP_006015702.1| ribosomal large subunit pseudouridine synthase, RluA family
[Staphylococcus pseudintermedius ED99]
gi|323464710|gb|ADX76863.1| ribosomal large subunit pseudouridine synthase, RluA family
[Staphylococcus pseudintermedius ED99]
Length = 305
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
++ +K GD + T E+ +AE++ LDI YEDD+V +V KP MVVHP+PG+ TGTL
Sbjct: 53 NYKLKLGDRIEITEKEVVEADIQAENLNLDIYYEDDDVAIVYKPKGMVVHPSPGHYTGTL 112
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VNG+++ + L+ N E IRPGIVHR+DK TSGLL+V
Sbjct: 113 VNGLMY--QIKNLSGINSE----------------------IRPGIVHRIDKDTSGLLMV 148
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L EQ T++R YI+L G G I+ PI R+ N+R MA +
Sbjct: 149 AKNDVAHRSLVEQLMAKTVKRKYIALVHGHIPHEFGTIDAPIGRNKNDRQSMAVV----- 203
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ A + + VIE LVE LETGRTHQ
Sbjct: 204 -DDGKEAVTHFNVIETFK--NYTLVECELETGRTHQ 236
>gi|333377526|ref|ZP_08469260.1| hypothetical protein HMPREF9456_00855 [Dysgonomonas mossii DSM
22836]
gi|332884260|gb|EGK04528.1| hypothetical protein HMPREF9456_00855 [Dysgonomonas mossii DSM
22836]
Length = 355
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 110/192 (57%), Gaps = 28/192 (14%)
Query: 50 EDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDA 109
EDIPLD+VYED++++V+NKP +VVHP GN GT+VN I A
Sbjct: 102 EDIPLDVVYEDEDLMVINKPPGLVVHPGFGNYQGTMVNAI-------------------A 142
Query: 110 EDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYI 169
+ D E+ S R GIVHR+DK TSGL++VAK+ ++ HLS QF T +R YI
Sbjct: 143 YRLKDTPEYDSK----DPRLGIVHRIDKDTSGLILVAKNAYAKTHLSAQFFNKTTKRQYI 198
Query: 170 SLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSAL 229
+L G S GRIE I R NR+ M P ++ +HA + YKV+E L G L
Sbjct: 199 ALVWGNISDDEGRIEANIGRSLKNRMLMTVFPEAD---YGKHAVTHYKVLERL--GYVTL 253
Query: 230 VEWRLETGRTHQ 241
++ RLETGRTHQ
Sbjct: 254 IQCRLETGRTHQ 265
>gi|212639635|ref|YP_002316155.1| Pseudouridylate synthase, 23S RNA-specific [Anoxybacillus
flavithermus WK1]
gi|212561115|gb|ACJ34170.1| Pseudouridylate synthase, 23S RNA-specific [Anoxybacillus
flavithermus WK1]
Length = 303
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 116/209 (55%), Gaps = 32/209 (15%)
Query: 33 DMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 92
D V +I +PL E IPLDI YED +VLVVNKP MVVHPAPG+ GTLVN +L H
Sbjct: 59 DEVVISIPSPEPLDVAPEPIPLDIYYEDADVLVVNKPRGMVVHPAPGHMHGTLVNALLAH 118
Query: 93 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSH 152
C +D+ S I+G +RPGIVHR+DK TSGLL+VAK++ +H
Sbjct: 119 C----------------QDL-------SGINGV-LRPGIVHRIDKDTSGLLMVAKNDLAH 154
Query: 153 AHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHA 212
L Q T+ R Y+++ GV G I+ PI RDP +R MA + + A
Sbjct: 155 ESLVNQLVNKTVTRKYVAIVHGVIPHDYGTIDAPIGRDPRDRQSMAVV------ENGKEA 208
Query: 213 ASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ ++V+E VE +LETGRTHQ
Sbjct: 209 VTHFRVLERFE--HYTFVECQLETGRTHQ 235
>gi|408401446|ref|YP_006859409.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|407967674|dbj|BAM60912.1| ribosomal large subunit pseudouridine synthase D [Streptococcus
dysgalactiae subsp. equisimilis RE378]
Length = 297
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 132/233 (56%), Gaps = 32/233 (13%)
Query: 9 NQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 68
+Q+ + ++ + + V+ GD++ + + + L +A+DIPL+I+YED+ + ++NK
Sbjct: 29 DQIKQGLVLVNGQQKKAKYTVQAGDVIQFELPKEEVLEYQAQDIPLNIIYEDEALAIINK 88
Query: 69 PAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 128
P MVVHP+ G+ +GT+VN +++H +D+ SSI+G +R
Sbjct: 89 PQGMVVHPSAGHPSGTMVNALMYHI----------------KDL-------SSINGV-VR 124
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 188
PGIVHR+DKGTSGLL+VAK + +H L+ + K R Y+++ G G IE PI
Sbjct: 125 PGIVHRIDKGTSGLLMVAKTDEAHQALAAELKAKKSLRKYLAIVHGNLPNDRGMIEAPIG 184
Query: 189 RDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R +R + A I + + A +R+ V+E G +LVE +LETGRTHQ
Sbjct: 185 RSEKDRKKQAVIT------KGKEAVTRFTVLERF--GDYSLVELQLETGRTHQ 229
>gi|423711105|ref|ZP_17685425.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
gi|395415019|gb|EJF81454.1| RluA family pseudouridine synthase [Bartonella washoensis Sb944nv]
Length = 334
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 125/222 (56%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K M+ TI L + E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN
Sbjct: 56 LKPNQMIELTIPVLSDAKPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+++HC + S I G RPGIVHRLDK TSG++VVAK+
Sbjct: 116 LIYHC----------------------HDSLSGIGGIK-RPGIVHRLDKNTSGVMVVAKN 152
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+ +H LS QF H ++R Y +L G PS++ I+ + R P+NR + A + +
Sbjct: 153 DLAHQSLSAQFSDHGRTSALDRRYHALIWGSPSRNVLTIDASLGRSPHNRTKQAVVHSQS 212
Query: 205 KHGQARHAASRYKVIE---ILAGGGS--ALVEWRLETGRTHQ 241
H ARHA + ++E LA S +L+E RLETGRTHQ
Sbjct: 213 SH--ARHAITHISLLEKYGTLADTTSFASLLECRLETGRTHQ 252
>gi|299134311|ref|ZP_07027504.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2]
gi|298591058|gb|EFI51260.1| pseudouridine synthase, RluA family [Afipia sp. 1NLS2]
Length = 347
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 115/202 (56%), Gaps = 37/202 (18%)
Query: 48 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 107
E E+IPL+IVYEDD++LV+NKP +VVHPA G+ TGTLVN ++ HC
Sbjct: 93 EGENIPLNIVYEDDDLLVLNKPKGLVVHPAAGHETGTLVNALIAHCGT------------ 140
Query: 108 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLH----T 163
S S G RPGIVHRLDK T+GL+VVAK++ +H L+ QF H
Sbjct: 141 -----------SLSGIGGVKRPGIVHRLDKDTTGLMVVAKNDRAHQSLTAQFADHGRTGA 189
Query: 164 IERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILA 223
+ R Y++ G PS+S G I+ PI R P R +MA G RHA + ++++E
Sbjct: 190 LRRGYMAFVWGAPSRSHGTIDQPIDRHPFAREKMAVRQG------GRHAVTHWEMLESFE 243
Query: 224 GGG----SALVEWRLETGRTHQ 241
G +AL+ +LETGRTHQ
Sbjct: 244 GRDGKPLAALLACQLETGRTHQ 265
>gi|219849171|ref|YP_002463604.1| RluA family pseudouridine synthase [Chloroflexus aggregans DSM
9485]
gi|219543430|gb|ACL25168.1| pseudouridine synthase, RluA family [Chloroflexus aggregans DSM
9485]
Length = 310
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 119/216 (55%), Gaps = 34/216 (15%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
S + G +++ TI P+ E IPLDIVYED +V V+NKPA MVVHPAPG+ GTL
Sbjct: 63 SQPLHPGTIIHVTIPPPVPVELMPESIPLDIVYEDADVAVINKPAGMVVHPAPGHPRGTL 122
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L P LA S + +RPGIVHRLD+ TSGLLV+
Sbjct: 123 VNALL--ARYPDLAISGE-----------------------VRPGIVHRLDRDTSGLLVI 157
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
A+ + + L EQ + + ++Y +L G P G I+ PI RDP +R+RMA +
Sbjct: 158 ARHDAALRALVEQQQARRMRKIYQALVVGRPP-VCGTIDAPIGRDPRDRLRMAVV----- 211
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R A + Y+VI G +L+E +LETGRTHQ
Sbjct: 212 -ADGRPARTHYRVIATF--GDYSLLEVQLETGRTHQ 244
>gi|424673064|ref|ZP_18110007.1| pseudouridine synthase, RluA family [Enterococcus faecalis 599]
gi|402352874|gb|EJU87710.1| pseudouridine synthase, RluA family [Enterococcus faecalis 599]
Length = 310
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 120/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ + ++ V GD + TI E + L AEDIPL IVYED++V+VVNKP MVVHP+ G+
Sbjct: 54 ETVRANYKVTAGDEIVVTIPEPEVLDMVAEDIPLTIVYEDNDVIVVNKPQGMVVHPSVGH 113
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +LHH + S D+ +RPGIVHR+DK TS
Sbjct: 114 PNGTLVNALLHHA----------DHLSAINDV--------------VRPGIVHRIDKDTS 149
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ ++ L++Q K T R Y++L GV G I PI R +R A I
Sbjct: 150 GLLMVAKNDQAYESLAKQLKEKTSLRKYVALVHGVIPHDKGEINAPIGRSKVDRKMQAVI 209
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G + A + + V+E LVE +LETGRTHQ
Sbjct: 210 EG------GKEAVTHFTVLERF--DAFTLVELQLETGRTHQ 242
>gi|260889966|ref|ZP_05901229.1| ribosomal large subunit pseudouridine synthase D [Leptotrichia
hofstadii F0254]
gi|260860572|gb|EEX75072.1| ribosomal large subunit pseudouridine synthase D [Leptotrichia
hofstadii F0254]
Length = 326
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 29/226 (12%)
Query: 16 LFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVH 75
+ ++ K ++ ++ D + I EL+ + + E+I ++I+YED+++ V+NK A +VVH
Sbjct: 61 ILVNEKKTKPAYKIEENDTIKVVIPELETVEIKPENIDIEIIYEDNDLAVINKKAGIVVH 120
Query: 76 PAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRL 135
PA G+ +GTLVN IL++ D+S I+G IRPGIVHRL
Sbjct: 121 PANGHYSGTLVNAILYYIK----------------DLS-------GING-EIRPGIVHRL 156
Query: 136 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRI 195
DK TSGLL++AK++ +H LS+ F T+++ Y+++ G SQ SGRI I RD N+R
Sbjct: 157 DKDTSGLLIIAKNDKAHLKLSQMFHDKTVKKTYLAILKGKLSQKSGRIVTQIGRDKNDRK 216
Query: 196 RMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+M +N + A + Y+VI LV+ +ETGRTHQ
Sbjct: 217 KMTV---TNDLNSGKTAITNYEVIS--QTEKFTLVKVHIETGRTHQ 257
>gi|328957532|ref|YP_004374918.1| pseudouridylate synthase [Carnobacterium sp. 17-4]
gi|328673856|gb|AEB29902.1| pseudouridylate synthase [Carnobacterium sp. 17-4]
Length = 301
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 124/221 (56%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+K+ ++ V+ GD + EL L AEDIP++IVY+D++V+VVNK MVVHP+ G+
Sbjct: 46 EKMKANYKVQPGDEIAIVEPELVSLEVLAEDIPIEIVYQDEDVVVVNKAQGMVVHPSAGH 105
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
TGTLVN ++HH + D+ S I+G +IRPGIVHR+DK TS
Sbjct: 106 QTGTLVNALMHHIT----------------DL-------SGING-TIRPGIVHRIDKDTS 141
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL+VAK++ +H L+ Q K T R YI+L GV G I+ P+ R +R + I
Sbjct: 142 GLLMVAKNDAAHEKLAAQLKDKTSLREYIALVHGVIPHEKGTIDAPLGRSKQDRKKQDII 201
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
G R A + + V+E LV +LETGRTHQ
Sbjct: 202 DG------GRAAVTHFTVLERFK--DFTLVSLKLETGRTHQ 234
>gi|257869391|ref|ZP_05649044.1| pseudouridylate synthase [Enterococcus gallinarum EG2]
gi|357051723|ref|ZP_09112890.1| hypothetical protein HMPREF9478_02873 [Enterococcus saccharolyticus
30_1]
gi|257803555|gb|EEV32377.1| pseudouridylate synthase [Enterococcus gallinarum EG2]
gi|355379322|gb|EHG26486.1| hypothetical protein HMPREF9478_02873 [Enterococcus saccharolyticus
30_1]
Length = 301
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 121/221 (54%), Gaps = 32/221 (14%)
Query: 21 DKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
D + ++ VK GD + + E + L E EDIPL IVY+D +V V+NKP MVVHP+ G+
Sbjct: 45 DPIRANYKVKAGDQLVIQVPEPESLDLEPEDIPLTIVYQDQDVAVINKPQGMVVHPSAGH 104
Query: 81 ATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140
GTLVN +L+H +D I+D +RPGIVHR+DK TS
Sbjct: 105 PNGTLVNALLYH-------------MTDLSSIND-----------VVRPGIVHRIDKDTS 140
Query: 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAI 200
GLL++AK++H+H L++Q K T R Y++L G S G I PI R NR +M A+
Sbjct: 141 GLLMIAKNDHAHEALAKQLKDKTSLRKYVALVHGNISHEKGTINAPIGRSKVNR-KMQAV 199
Query: 201 PGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
K A + + V+E LVE +LETGRTHQ
Sbjct: 200 QEDGK-----PAVTHFTVLERF--DQFTLVELQLETGRTHQ 233
>gi|395217330|ref|ZP_10401583.1| pseudouridine synthase [Pontibacter sp. BAB1700]
gi|394455011|gb|EJF09565.1| pseudouridine synthase [Pontibacter sp. BAB1700]
Length = 361
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 122/222 (54%), Gaps = 33/222 (14%)
Query: 23 LSVSHNVKGGDMVNCTISELQPLRAE--AEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGN 80
+ VS+ VK D++ T++ P E EDIP++I+YED+ +L++NK MVVHP N
Sbjct: 83 VKVSYKVKPLDVITITLAT-PPRDTEIIPEDIPINIMYEDEELLIINKEPGMVVHPGFNN 141
Query: 81 ATGTLVNGILHHCS-LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 139
+GTLVN + +H LPT + N E RPG+VHR+DK T
Sbjct: 142 WSGTLVNALTYHLQQLPT--TRNGEG----------------------RPGLVHRIDKDT 177
Query: 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAA 199
SGLLV+AK E+S A L++QF HTIER Y +L GVP Q G I + R +R M
Sbjct: 178 SGLLVIAKTEYSMAFLAKQFFKHTIERTYYALVWGVPKQDEGTIVGHVGRSAKDRRVMTV 237
Query: 200 IPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
P +HA + YKV++ +LV+ LETGRTHQ
Sbjct: 238 YPNGEF---GKHAVTHYKVLQKYK--YVSLVQCNLETGRTHQ 274
>gi|77406381|ref|ZP_00783442.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae H36B]
gi|77175005|gb|EAO77813.1| ribosomal large subunit pseudouridine synthase, RluD subfamily
[Streptococcus agalactiae H36B]
Length = 296
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 124/216 (57%), Gaps = 32/216 (14%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ V+ GD + I + + L +AE+IPLDI+Y+DD+V VVNKP MVVHP+ G+++GTL
Sbjct: 46 KYTVQEGDRITFDIPKKEVLDYQAENIPLDIIYQDDDVAVVNKPQGMVVHPSAGHSSGTL 105
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +++H +D+ SSI+G +RPGIVHR+DK TSGLL+V
Sbjct: 106 VNALMYHI----------------KDL-------SSINGV-VRPGIVHRIDKDTSGLLMV 141
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ +H L+E+ K R Y+++ G G IE PI R +R + A
Sbjct: 142 AKNDRAHQVLAEELKDKKSLRKYLAIVHGNLPNDQGVIEAPIGRSDKDRKKQAVT----- 196
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+ + A +R+ V+E G LVE LETGRTHQ
Sbjct: 197 -AKGKPAVTRFHVLERF--GDYTLVELSLETGRTHQ 229
>gi|395780276|ref|ZP_10460743.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
gi|395419543|gb|EJF85843.1| RluA family pseudouridine synthase [Bartonella washoensis 085-0475]
Length = 337
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 125/222 (56%), Gaps = 34/222 (15%)
Query: 29 VKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNG 88
+K M+ TI L + E I LDI++EDD+V+V+NKPA +VVHP GN TGTLVN
Sbjct: 56 LKPNQMIELTIPVLSDAKPSGEAIALDILFEDDHVIVINKPAGLVVHPGNGNWTGTLVNA 115
Query: 89 ILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKD 148
+++HC + S I G RPGIVHRLDK TSG++VVAK+
Sbjct: 116 LIYHC----------------------HDSLSGIGGIK-RPGIVHRLDKNTSGVMVVAKN 152
Query: 149 EHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSN 204
+ +H LS QF H ++R Y +L G PS++ I+ + R P+NR + A + +
Sbjct: 153 DLAHQSLSAQFSDHGRTSALDRRYHALIWGSPSRNVLTIDASLGRSPHNRTKQAVVHSQS 212
Query: 205 KHGQARHAASRYKVIE---ILAGGGS--ALVEWRLETGRTHQ 241
H ARHA + ++E LA S +L+E RLETGRTHQ
Sbjct: 213 SH--ARHAITHISLLEKYGTLADTTSFASLLECRLETGRTHQ 252
>gi|386362494|ref|YP_006071825.1| pseudouridine synthase, RluA family protein [Streptococcus pyogenes
Alab49]
gi|350276903|gb|AEQ24271.1| pseudouridine synthase, RluA family protein [Streptococcus pyogenes
Alab49]
Length = 296
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 131/233 (56%), Gaps = 32/233 (13%)
Query: 9 NQVSVLALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNK 68
+Q+ + ++ + + V+ GD++ + + + L +A+DIPLDI+YEDD + ++NK
Sbjct: 29 DQIKQGLVLVNGQQKKAKYTVQAGDVICFELPKEEVLEYQAQDIPLDIIYEDDALAIINK 88
Query: 69 PAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIR 128
P MVVHP+ G+ +GT+VN +++H +D+ SSI+G +R
Sbjct: 89 PQGMVVHPSAGHPSGTMVNALMYHI----------------KDL-------SSINGV-VR 124
Query: 129 PGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPIS 188
PGIVHR+DK TSGLL+VAK + +H L+E+ K R Y+++ G G IE PI
Sbjct: 125 PGIVHRIDKDTSGLLMVAKTDAAHQALAEELKAKKSLRKYLAIVHGNLPNDRGMIEAPIG 184
Query: 189 RDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
R +R + A + + A +R+ V+E G +LVE +LETGRTHQ
Sbjct: 185 RSEKDRKKQAVT------AKGKEAVTRFTVLERF--GDYSLVELQLETGRTHQ 229
>gi|50365205|ref|YP_053630.1| 23S rRNA/tRNA pseudouridine synthase [Mesoplasma florum L1]
gi|50363761|gb|AAT75746.1| 23S rRNA/tRNA pseudouridine synthase [Mesoplasma florum L1]
Length = 311
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 120/216 (55%), Gaps = 30/216 (13%)
Query: 26 SHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTL 85
+ N+ G + I E++ E I LDIVYEDD++LVVNKP +MVVHP GN GT+
Sbjct: 51 NFNLIGDIEIEINIPEVKTSTINPEKIDLDIVYEDDDILVVNKPNNMVVHPGAGNTEGTM 110
Query: 86 VNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVV 145
VN +L D EF S+I G RPGIVHR+DK T+GLL+V
Sbjct: 111 VNALL----------------------GRDAEFLSTIGGVE-RPGIVHRIDKQTTGLLIV 147
Query: 146 AKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNK 205
AK++ SH L+E K H I + Y++L G + G I+ PI R N+R +M ++K
Sbjct: 148 AKNDKSHQVLTEMLKNHEIYKEYVALVWGEIKEDKGIIDAPIGRHQNDRKKMMVTSKNSK 207
Query: 206 HGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241
+A + ++VI+ L + LV+ +ETGRTHQ
Sbjct: 208 -----YAVTNFEVIKRL--DKTTLVKCAIETGRTHQ 236
>gi|86358939|ref|YP_470831.1| pseudouridylate synthase, ribosomal large subunit D protein
[Rhizobium etli CFN 42]
gi|86283041|gb|ABC92104.1| pseudouridylate synthase, ribosomal large subunit D protein
[Rhizobium etli CFN 42]
Length = 354
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 124/223 (55%), Gaps = 34/223 (15%)
Query: 28 NVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVN 87
V+ GD T+ E + + EDIPL+I++EDD+++V++KPA +VVHP GN TGTLVN
Sbjct: 77 KVRVGDSFEITLPEPEDPTPKGEDIPLEILHEDDDLIVISKPAGLVVHPGSGNWTGTLVN 136
Query: 88 GILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAK 147
++HHC + S I G RPGIVHRLDK T+G++VVAK
Sbjct: 137 ALIHHCG----------------------DTLSGIGGVR-RPGIVHRLDKDTTGVMVVAK 173
Query: 148 DEHSHAHLSEQFKLH----TIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGS 203
++ +H HLS QF H +ER Y ++ G P SG I+ P+ R +R R A
Sbjct: 174 NDVAHRHLSLQFADHGRTMPLERAYRAVVWGRPRTLSGTIDAPLGRATGDRTRRAVKRPD 233
Query: 204 NKHGQARHAASRYKVIEIL-----AGGGSALVEWRLETGRTHQ 241
++ A A + Y+VIE A ++LVE LETGRTHQ
Sbjct: 234 SQDADA--AITHYEVIERFQENPDATALASLVECHLETGRTHQ 274
>gi|303236145|ref|ZP_07322746.1| pseudouridine synthase, RluA family [Prevotella disiens FB035-09AN]
gi|302483651|gb|EFL46645.1| pseudouridine synthase, RluA family [Prevotella disiens FB035-09AN]
Length = 360
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 112/194 (57%), Gaps = 27/194 (13%)
Query: 48 EAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFS 107
EAE+IPLDIVYEDD ++V+NKPA +VVHP GN GTL+N I H
Sbjct: 104 EAEEIPLDIVYEDDEIMVINKPAGLVVHPGAGNFHGTLINAIAWHL-------------- 149
Query: 108 DAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERV 167
+D+ D + ++ G+VHR+DK TSGLL++AK + L +QF T R
Sbjct: 150 --KDLKDFDPNDPAV-------GLVHRIDKDTSGLLLIAKTPDAKTFLGKQFFNKTTHRS 200
Query: 168 YISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGS 227
Y +L G + GRIE I RDP +R+RMA P + G ++A + Y+V+E G +
Sbjct: 201 YNALVWGNLVEDEGRIEGNIGRDPKDRLRMAVFPPES--GIGKNAVTHYRVLERF--GYT 256
Query: 228 ALVEWRLETGRTHQ 241
LVE RLETGRTHQ
Sbjct: 257 TLVECRLETGRTHQ 270
>gi|259415714|ref|ZP_05739634.1| ribosomal large subunit pseudouridine synthase D [Silicibacter sp.
TrichCH4B]
gi|259347153|gb|EEW58930.1| ribosomal large subunit pseudouridine synthase D [Silicibacter sp.
TrichCH4B]
Length = 345
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 126/222 (56%), Gaps = 35/222 (15%)
Query: 32 GDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILH 91
G + T+ + + EDI LD++YED +++V+NKPA MVVHPAPG+ +GTLVN +LH
Sbjct: 63 GAQIVITVEDAEESHIGPEDIALDVIYEDADLIVINKPAGMVVHPAPGSPSGTLVNALLH 122
Query: 92 HCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHS 151
HC D+S G RPGIVHR+DK TSGLLVVAK + +
Sbjct: 123 HCG---------------ADLSG--------VGGVKRPGIVHRIDKETSGLLVVAKSDAA 159
Query: 152 HAHLSEQFKLHTIERVYISLTSGVPSQSSGRIE--VPISRDPNNRIRMA---AIPGSNKH 206
H L+ QF+ H++ER Y ++ GVP + R+ S +P N +++ A +++
Sbjct: 160 HQGLAAQFERHSVERYYQAVCYGVPDANDPRLRGVRGASFEPGNILKLTTQLARHKTDRQ 219
Query: 207 GQA------RHAASRYKVIEIL-AGGGSALVEWRLETGRTHQ 241
QA RHA +R ++IE A ++LVE LETGRTHQ
Sbjct: 220 RQAVLFEGGRHAVTRARIIEAFGAPAAASLVECWLETGRTHQ 261
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,776,584,895
Number of Sequences: 23463169
Number of extensions: 154812165
Number of successful extensions: 350860
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9994
Number of HSP's successfully gapped in prelim test: 2021
Number of HSP's that attempted gapping in prelim test: 321773
Number of HSP's gapped (non-prelim): 18835
length of query: 241
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 103
effective length of database: 9,121,278,045
effective search space: 939491638635
effective search space used: 939491638635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)