Query 026204
Match_columns 241
No_of_seqs 153 out of 1580
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 08:02:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 8.1E-42 2.8E-46 303.5 19.3 190 16-241 44-234 (325)
2 2i82_A Ribosomal large subunit 100.0 3.5E-37 1.2E-41 259.1 18.5 149 54-241 12-161 (217)
3 1v9k_A Ribosomal large subunit 100.0 7E-36 2.4E-40 253.0 18.0 148 55-241 3-152 (228)
4 1ksk_A Ribosomal small subunit 100.0 5.5E-33 1.9E-37 236.0 7.1 158 15-241 29-188 (234)
5 2oml_A Ribosomal large subunit 100.0 2E-33 6.8E-38 231.5 1.2 145 54-241 4-151 (189)
6 1vio_A Ribosomal small subunit 100.0 1.3E-32 4.4E-37 235.1 5.4 158 15-241 28-187 (243)
7 2olw_A Ribosomal large subunit 100.0 8.2E-32 2.8E-36 226.4 5.2 146 53-241 31-179 (217)
8 3dh3_A Ribosomal large subunit 100.0 1.5E-29 5.3E-34 220.7 5.1 157 15-241 32-188 (290)
9 2gml_A Ribosomal large subunit 99.9 3.5E-25 1.2E-29 187.4 4.6 123 60-241 13-135 (237)
10 1k8w_A TRNA pseudouridine synt 97.3 0.00021 7.2E-09 62.6 5.2 72 61-175 25-97 (327)
11 2aus_C Pseudouridine synthase; 97.3 0.00017 5.8E-09 63.6 4.4 71 60-173 45-115 (334)
12 1r3e_A TRNA pseudouridine synt 97.3 0.00018 6.1E-09 62.5 4.1 70 61-173 3-72 (309)
13 1sgv_A TRNA pseudouridine synt 97.2 0.00024 8.1E-09 61.9 3.9 71 60-173 5-75 (316)
14 2apo_A Probable tRNA pseudouri 97.2 0.00025 8.7E-09 62.9 4.2 71 60-173 65-135 (357)
15 3u28_A H/ACA ribonucleoprotein 97.0 0.00054 1.9E-08 61.4 4.6 74 59-175 57-131 (400)
16 2k6p_A Uncharacterized protein 96.7 0.00055 1.9E-08 48.7 1.8 49 15-63 27-83 (92)
17 1dm9_A Hypothetical 15.5 KD pr 90.5 0.22 7.5E-06 37.7 3.6 27 15-41 35-61 (133)
18 2hj1_A Hypothetical protein; s 89.9 0.16 5.6E-06 36.3 2.4 27 14-40 59-85 (97)
19 2q5w_D Molybdopterin convertin 86.0 0.81 2.8E-05 30.5 3.8 24 15-38 48-71 (77)
20 3po0_A Small archaeal modifier 83.5 0.89 3E-05 31.3 3.2 27 13-39 58-84 (89)
21 1c05_A Ribosomal protein S4 de 81.3 1 3.5E-05 35.0 3.1 26 15-40 77-103 (159)
22 1fm0_D Molybdopterin convertin 80.6 1.6 5.5E-05 29.3 3.6 24 15-38 52-75 (81)
23 1p9k_A ORF, hypothetical prote 80.5 0.58 2E-05 31.8 1.2 24 15-38 47-71 (79)
24 1vjk_A Molybdopterin convertin 80.4 1.3 4.5E-05 31.2 3.2 27 12-38 66-92 (98)
25 3hvz_A Uncharacterized protein 79.8 1.2 4E-05 30.4 2.6 30 11-40 39-68 (78)
26 1ryj_A Unknown; beta/alpha pro 79.1 2.1 7.3E-05 28.2 3.7 25 15-39 41-65 (70)
27 2cu3_A Unknown function protei 78.1 1.7 5.8E-05 28.1 2.9 25 15-39 31-59 (64)
28 2vqe_D 30S ribosomal protein S 77.9 1.4 4.9E-05 35.8 3.1 26 15-40 125-151 (209)
29 3fm8_A Kinesin-like protein KI 76.9 1.9 6.6E-05 32.0 3.3 24 14-37 90-113 (124)
30 1rws_A Hypothetical protein PF 76.7 0.67 2.3E-05 31.3 0.6 24 15-38 48-71 (77)
31 2kl0_A Putative thiamin biosyn 76.6 1.2 4.1E-05 29.9 1.9 31 8-39 26-60 (73)
32 2l32_A Small archaeal modifier 74.7 1.3 4.3E-05 29.9 1.6 29 8-38 32-60 (74)
33 3rpf_C Molybdopterin convertin 73.7 3 0.0001 27.6 3.4 27 13-39 42-69 (74)
34 2k5p_A THis protein, thiamine- 73.7 1.9 6.7E-05 29.2 2.4 24 15-38 36-63 (78)
35 1wv3_A Similar to DNA segregat 73.7 3.8 0.00013 33.8 4.6 37 16-66 137-174 (238)
36 1tyg_B YJBS; alpha beta barrel 73.5 2.8 9.5E-05 29.1 3.2 25 15-39 54-82 (87)
37 4ejq_A Kinesin-like protein KI 72.7 2.2 7.4E-05 32.8 2.7 26 12-37 108-133 (154)
38 3bbn_D Ribosomal protein S4; s 72.5 2 6.9E-05 34.7 2.5 26 15-40 115-141 (201)
39 1f0z_A THis protein; ubiquitin 72.0 1.9 6.4E-05 28.0 1.9 25 15-39 33-61 (66)
40 3dwg_C 9.5 kDa culture filtrat 71.2 3.3 0.00011 28.6 3.2 27 13-39 58-88 (93)
41 1wln_A Afadin; beta sandwich, 70.4 3 0.0001 30.4 2.9 26 12-37 78-103 (120)
42 2kmm_A Guanosine-3',5'-BIS(dip 69.7 3.4 0.00012 26.9 2.9 28 12-39 35-62 (73)
43 2g1e_A Hypothetical protein TA 67.1 4.4 0.00015 27.6 3.1 25 14-38 56-84 (90)
44 2jqj_A DNA damage response pro 66.7 3.3 0.00011 31.5 2.6 30 8-37 81-111 (151)
45 4h87_A Kanadaptin; FHA domain 66.1 4.1 0.00014 30.3 3.0 26 12-37 92-119 (130)
46 3gqs_A Adenylate cyclase-like 64.3 2.5 8.6E-05 30.0 1.4 26 12-37 67-92 (106)
47 3hx1_A SLR1951 protein; P74513 63.1 3.2 0.00011 30.9 1.8 25 12-37 80-104 (131)
48 3r8n_D 30S ribosomal protein S 62.6 1 3.5E-05 36.6 -1.1 25 15-39 121-146 (205)
49 2l52_A Methanosarcina acetivor 60.2 6 0.0002 27.8 2.8 24 15-38 66-93 (99)
50 3j20_E 30S ribosomal protein S 56.6 8.1 0.00028 32.0 3.3 23 16-38 71-94 (243)
51 3kbg_A 30S ribosomal protein S 56.3 12 0.00042 30.3 4.3 23 15-37 35-58 (213)
52 2pie_A E3 ubiquitin-protein li 55.7 7.8 0.00027 28.9 2.9 27 12-38 73-101 (138)
53 2cqj_A BRMS2, U3 small nucleol 55.1 3.5 0.00012 27.4 0.7 24 15-38 34-60 (71)
54 3po8_A RV0020C protein, putati 54.6 5.7 0.00019 27.8 1.8 25 12-37 63-87 (100)
55 1gxc_A CHK2, CDS1, serine/thre 54.2 6 0.0002 30.0 2.0 30 9-38 98-129 (149)
56 1g3g_A Protien kinase SPK1; FH 53.7 8.5 0.00029 29.7 2.9 30 9-38 102-133 (164)
57 1g6g_A Protein kinase RAD53; b 53.7 7.2 0.00025 28.6 2.4 30 9-38 74-105 (127)
58 1r21_A Antigen KI-67; beta san 53.4 4.6 0.00016 29.7 1.2 26 12-37 73-98 (128)
59 2xt9_B Putative signal transdu 53.1 8.4 0.00029 27.7 2.6 25 12-37 71-95 (115)
60 1v8c_A MOAD related protein; r 52.0 11 0.00037 29.4 3.2 25 14-38 53-81 (168)
61 1uht_A Expressed protein; FHA 51.6 5.2 0.00018 28.9 1.2 26 12-37 74-101 (118)
62 2qjl_A URM1, ubiquitin-related 50.0 13 0.00046 25.9 3.2 25 15-39 66-94 (99)
63 1lgp_A Cell cycle checkpoint p 49.5 5.3 0.00018 28.7 1.0 30 10-39 64-95 (116)
64 2csw_A Ubiquitin ligase protei 48.5 8.4 0.00029 29.0 2.0 28 12-39 81-110 (145)
65 1qu5_A Protein kinase SPK1; FH 48.4 5.5 0.00019 31.5 1.0 32 8-39 101-134 (182)
66 1dmz_A Protein (protein kinase 47.9 5 0.00017 30.8 0.7 30 9-38 78-109 (158)
67 2kb3_A Oxoglutarate dehydrogen 45.7 7.4 0.00025 29.4 1.3 25 12-37 106-130 (143)
68 1wgk_A Riken cDNA 2900073H19 p 43.2 14 0.00049 26.7 2.5 29 11-39 71-103 (114)
69 2kfu_A RV1827 PThr 22; FHA dom 42.6 12 0.00042 28.9 2.2 25 12-37 115-139 (162)
70 1mzk_A Kinase associated prote 42.5 8.6 0.00029 28.7 1.2 26 12-37 74-109 (139)
71 3kt9_A Aprataxin; FHA domain, 41.7 12 0.00041 26.7 1.8 31 8-38 58-90 (102)
72 3j20_D 30S ribosomal protein S 41.3 6.5 0.00022 31.1 0.4 24 15-38 129-155 (180)
73 2k9x_A Tburm1, uncharacterized 41.1 18 0.00061 26.1 2.7 26 14-39 68-97 (110)
74 3els_A PRE-mRNA leakage protei 40.6 8.6 0.0003 29.6 1.0 26 12-37 115-142 (158)
75 3va4_A Mediator of DNA damage 39.1 16 0.00055 27.1 2.3 26 12-37 87-116 (132)
76 2jpe_A Nuclear inhibitor of pr 38.4 8.2 0.00028 28.8 0.5 26 12-37 98-125 (140)
77 3iz6_C 40S ribosomal protein S 38.1 2.3 7.9E-05 34.2 -2.7 25 16-40 136-161 (195)
78 2xzm_D Ribosomal protein S4 co 37.6 10 0.00036 29.9 1.1 25 15-39 133-158 (181)
79 3u7z_A Putative metal binding 35.7 29 0.001 24.6 3.1 30 10-39 65-97 (101)
80 3uv0_A Mutator 2, isoform B; F 32.7 11 0.00037 27.0 0.3 26 8-34 55-81 (102)
81 2ckc_A Chromodomain-helicase-D 30.6 22 0.00074 24.0 1.5 34 60-93 24-57 (80)
82 2dl6_A Chromodomain-helicase-D 29.5 28 0.00096 23.8 2.0 35 59-93 16-50 (83)
83 3jxo_A TRKA-N domain protein; 27.1 97 0.0033 20.1 4.6 30 10-39 40-71 (86)
84 2eki_A DRG 1, developmentally- 25.3 25 0.00085 24.6 1.2 23 18-40 65-87 (93)
85 1wwt_A Threonyl-tRNA synthetas 25.2 38 0.0013 22.6 2.2 28 12-39 45-72 (88)
86 3hp7_A Hemolysin, putative; st 24.9 38 0.0013 28.6 2.5 25 15-39 33-60 (291)
87 3oug_A Aspartate 1-decarboxyla 22.0 79 0.0027 22.9 3.3 21 16-39 72-92 (114)
88 3nx6_A 10KDA chaperonin; bacte 21.2 1.1E+02 0.0037 21.3 3.8 11 28-38 58-68 (95)
89 1we3_O CPN10(groes); chaperoni 20.3 1.1E+02 0.0037 21.5 3.7 11 28-38 63-73 (100)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=8.1e-42 Score=303.51 Aligned_cols=190 Identities=39% Similarity=0.637 Sum_probs=138.4
Q ss_pred EEecCee-cCCCceecCCCEEEEEecCCCCccCCCCCCCccEEEecCcEEEEECCCCceeecCCCCCCCCHHHHHHHhcC
Q 026204 16 LFLSMDK-LSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 94 (241)
Q Consensus 16 v~vng~~-~~~~~~l~~GD~i~~~~~~~~~~~~~~~~~~~~Ilyed~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~ 94 (241)
|.|||++ .++++.|++||.|.+...........++..+++|+|||++++|+|||+||+||++.+....|+.+.+..++.
T Consensus 44 V~VNG~~v~~~~~~v~~gD~I~v~~~~~~~~~~~~~~~~~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~~~~~ 123 (325)
T 1v9f_A 44 VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYP 123 (325)
T ss_dssp --------------------------------CCCCCCCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCG
T ss_pred EEECCEEccCCCCEeCCCCEEEEeccccccccCCcccCCCeEEEECCCEEEEECCCCCeEecCCCCCCccHHHHHHHHHH
Confidence 8899998 789999999999999765433222334455688999999999999999999999887777899999887753
Q ss_pred CCccccccccccccccccccccccccccCCCCCCccccccCCCCCceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEec
Q 026204 95 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 174 (241)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~G 174 (241)
.. ....++++|||||++||||||||+|.++++.|+++|+.+.++|+|+|+|.|
T Consensus 124 ~~---------------------------~~~~~~~~vhRLD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G 176 (325)
T 1v9f_A 124 PI---------------------------ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG 176 (325)
T ss_dssp GG---------------------------GGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEES
T ss_pred hc---------------------------CCCCceeeecCCCCCCeeEEEEEcCHHHHHHHHHHHHcCCeeEEEEEEEeC
Confidence 10 012467899999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEcceeeCCCCCeeEEEecCCCCCCCCcceEEEEEEEEEecCCCEEEEEEEcCCCCCCC
Q 026204 175 VPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241 (241)
Q Consensus 175 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~~slv~~~l~TGR~HQ 241 (241)
.++. +|+|+.||.++..+..++.+.. +|+.|.|+|++++.. .++|+++|+|.||||||
T Consensus 177 ~~~~-~g~i~~~i~~~~~~~~~~~v~~------~gk~a~t~~~vl~~~--~~~slv~~~l~TGR~HQ 234 (325)
T 1v9f_A 177 HMTA-GGTVDEPISRHPTKRTHMAVHP------MGKPAVTHYRIMEHF--RVHTRLRLRLETGRTHQ 234 (325)
T ss_dssp CCCC-CEEEECCEEECSSCTTCEEECT------TSBCCEEEEEEEEEC--SSEEEEEEEESCCCTTH
T ss_pred CCCC-CCEEeeeeeECCCCCEEEEECC------CCeeEEEEEEEeEEc--CCeEEEEEEECCCCcHH
Confidence 9987 8999999999877777777754 789999999999984 57999999999999999
No 2
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=3.5e-37 Score=259.15 Aligned_cols=149 Identities=32% Similarity=0.483 Sum_probs=129.2
Q ss_pred ccEEEecCcEEEEECCCCceeecCCC-CCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCcccc
Q 026204 54 LDIVYEDDNVLVVNKPAHMVVHPAPG-NATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 132 (241)
Q Consensus 54 ~~Ilyed~~llVinKPaGl~~~~~~~-~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 132 (241)
++|+|||++++|+|||+|++||++.+ ....++.+.+...+ .++++|
T Consensus 12 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~~tl~~~l~~~~---------------------------------~~~~~v 58 (217)
T 2i82_A 12 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY---------------------------------PQAESV 58 (217)
T ss_dssp CCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHC---------------------------------TTCEES
T ss_pred ceEEEECCCEEEEECCCCCeEeCCCCCCchhHHHHHHHHHC---------------------------------CCCcee
Confidence 78999999999999999999998764 34578988887653 135789
Q ss_pred ccCCCCCceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEecccCCCccEEEcceeeCCCCCeeEEEecCCCCCCCCcce
Q 026204 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHA 212 (241)
Q Consensus 133 hRLD~~TSGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~k~a 212 (241)
||||++||||||||+|.++++.|+++|+++.++|+|+|+|.|.++.+.+.|+.||.++..+...+.+.. .+++.|
T Consensus 59 hRLD~~TSGlll~ak~~~~~~~l~~~f~~~~v~K~Y~a~v~G~~~~~~g~i~~~l~~~~~~~~~~~v~~-----~~gk~a 133 (217)
T 2i82_A 59 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCY-----ETGKPA 133 (217)
T ss_dssp SCCCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEEECT-----TTCBCC
T ss_pred ecCCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCCCcEEecceeecCCCCcEEEEeC-----CCCcEE
Confidence 999999999999999999999999999999999999999999998888999999998765544455432 378999
Q ss_pred EEEEEEEEEecCCCEEEEEEEcCCCCCCC
Q 026204 213 ASRYKVIEILAGGGSALVEWRLETGRTHQ 241 (241)
Q Consensus 213 ~T~~~vl~~~~~~~~slv~~~l~TGR~HQ 241 (241)
.|+|++++... .++|+++|+|.|||+||
T Consensus 134 ~t~~~vl~~~~-~~~slv~~~l~TGR~HQ 161 (217)
T 2i82_A 134 QTEYEVVEYAA-DNTARVVLKPITGRSHQ 161 (217)
T ss_dssp EEEEEEEEEET-TTEEEEEEEESSCCTTH
T ss_pred EEEEEEEEECC-CCeEEEEEEECCCCcHH
Confidence 99999999852 23899999999999999
No 3
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=7e-36 Score=253.03 Aligned_cols=148 Identities=30% Similarity=0.449 Sum_probs=126.2
Q ss_pred cEEEecCcEEEEECCCCceeecCCCCCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCcccccc
Q 026204 55 DIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHR 134 (241)
Q Consensus 55 ~Ilyed~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhR 134 (241)
+|+|||++++|+|||+|++|||+.+ ...++.+.+...+. ...++++|||
T Consensus 3 ~Ilyed~~~lvvnKP~G~~~~~~~~-~~~~l~~~l~~~~~------------------------------~~~~~~~VhR 51 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRP------------------------------EARFLELVHR 51 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSS-SBCCHHHHHHHHST------------------------------TCSCCEESSC
T ss_pred CEEEECCCEEEEECCCCCeEecCCC-hHHHHHHHHHHHcC------------------------------CCCccceEec
Confidence 4999999999999999999999765 45678887765532 1245788999
Q ss_pred CCCCCceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEecccCCCccEEEcceeeCCCC--CeeEEEecCCCCCCCCcce
Q 026204 135 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNN--RIRMAAIPGSNKHGQARHA 212 (241)
Q Consensus 135 LD~~TSGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~G~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~k~a 212 (241)
||++||||||||+|.++++.|+++|+++.++|+|+|+|.|.++.+.+.|+.||.++... ...+.+.. +|+.|
T Consensus 52 LD~~TSGlll~ak~~~~~~~l~~~~~~~~v~K~Y~a~v~G~~~~~~~~i~~~l~~~~~~~g~~~~~~~~------~gk~a 125 (228)
T 1v9k_A 52 LDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQ------EGKPS 125 (228)
T ss_dssp CCTTCEEEEEEESSHHHHHHHHHHHHTTCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEEEECT------TSBCC
T ss_pred CCCCCeEEEEEEeCHHHHHHHHHHHHhCCeeEEEEEEEecccCCCCCEEeCceeccCCCCCceEEEECC------CCcEE
Confidence 99999999999999999999999999999999999999999998899999999876432 23344432 68999
Q ss_pred EEEEEEEEEecCCCEEEEEEEcCCCCCCC
Q 026204 213 ASRYKVIEILAGGGSALVEWRLETGRTHQ 241 (241)
Q Consensus 213 ~T~~~vl~~~~~~~~slv~~~l~TGR~HQ 241 (241)
.|+|++++.. .++|+++|+|.||||||
T Consensus 126 ~t~~~vl~~~--~~~slv~~~l~TGR~HQ 152 (228)
T 1v9k_A 126 ETRFKVEERY--AFATLVRCSPVTGRTHQ 152 (228)
T ss_dssp CEEEEEEEEC--SSEEEEEEEESSCCTTH
T ss_pred EEEEEEEEEc--CCeEEEEEEECCCCchH
Confidence 9999999984 56999999999999999
No 4
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=99.97 E-value=5.5e-33 Score=236.04 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=121.1
Q ss_pred eEEecCeecC-CCceecCCCEEEEEecCCCCccCCCCCCCccEEEe-cCcEEEEECCCCceeecCCCCCCCCHHHHHHHh
Q 026204 15 ALFLSMDKLS-VSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYE-DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHH 92 (241)
Q Consensus 15 ~v~vng~~~~-~~~~l~~GD~i~~~~~~~~~~~~~~~~~~~~Ilye-d~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~ 92 (241)
.|.|||++++ +++.|++||.|.+.. ..|+|| |++++|+|||+||+|||..+. ..|+.+.+..+
T Consensus 29 ~V~VNG~~v~~~~~~v~~gD~I~v~~--------------~~i~~e~d~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~ 93 (234)
T 1ksk_A 29 RVTVDGEIVRNAAFKLLPEHDVAYDG--------------NPLAQQHGPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEP 93 (234)
T ss_dssp CEEETTEECCCTTCEECTTCCEEETT--------------EEECCCCCCCEEEEEECTTCBSSSSCSS-SCBGGGGCCCT
T ss_pred eEEECCEEeCCCCCCCCCCCEEEEeC--------------eEeecCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHhhhh
Confidence 4899999986 999999999998831 138999 999999999999999998764 56776654332
Q ss_pred cCCCccccccccccccccccccccccccccCCCCCCccccccCCCCCceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEE
Q 026204 93 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLT 172 (241)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV 172 (241)
+ ..++++|||||++||||||||+|.++++.|.+ +.+.++|+|+|+|
T Consensus 94 ~--------------------------------~~~~~~vhRLD~~TsGlll~ak~~~~~~~l~~--~~~~v~K~Y~a~v 139 (234)
T 1ksk_A 94 V--------------------------------AWKLHAAGRLDIDTTGLVLMTDDGQWSHRITS--PRHHCEKTYLVTL 139 (234)
T ss_dssp T--------------------------------GGGCEESSCCCTTCEEEEEEESCHHHHHHHHC--TTSCCCEEEEEEE
T ss_pred h--------------------------------cCCeeEcCCCCCCCeeEEEEEcCHHHHHHHhC--CCCCCCeEEEEEE
Confidence 1 13578999999999999999999999998876 7889999999999
Q ss_pred ecccCCCccEEEcceeeCCCCCeeEEEecCCCCCCCCcceEEEEEEEEEecCCCEEEEEEEcCCCCCCC
Q 026204 173 SGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241 (241)
Q Consensus 173 ~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~~slv~~~l~TGR~HQ 241 (241)
.|.++... |+.+.. . +.... ....+++|. |++++ +|+++|+|.||||||
T Consensus 140 ~g~~~~~~--i~~~~~--g-----~~~~~---~~~~~~~a~--~~~~~------~s~~~~~l~tGR~HQ 188 (234)
T 1ksk_A 140 ESPVADDT--AEQFAK--G-----VQLHN---EKDLTKPAV--LEVIT------PTQVRLTISEGRYHQ 188 (234)
T ss_dssp SSCCCTTH--HHHHHH--C-----CCCTT---CSSCCCCCE--EEEEE------TTEEEEEESCCCTTH
T ss_pred ccCCCHHH--HHHHHC--C-----eEECC---CCcccceEE--EEEeC------CeEEEEEEccCCCHH
Confidence 99987652 333321 0 00110 001345554 56664 489999999999999
No 5
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=99.97 E-value=2e-33 Score=231.54 Aligned_cols=145 Identities=18% Similarity=0.189 Sum_probs=106.2
Q ss_pred ccEEEecCcEEEEECCCCceeecCCCCCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCccccc
Q 026204 54 LDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVH 133 (241)
Q Consensus 54 ~~Ilyed~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh 133 (241)
..|||||++++|+|||+||+||+..+....|+.+.+. ..++++||
T Consensus 4 ~~ilyed~~~lvvnKP~G~~~~~~~~~~~~tl~~~l~-----------------------------------~~~~~~vh 48 (189)
T 2oml_A 4 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----------------------------------VQGVYAAG 48 (189)
T ss_dssp ----CCCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC-----------------------------------CSSCEESS
T ss_pred cccccCCCeEEEEECCCCCEecCCCCCCCCCHHHHcC-----------------------------------CCCceECC
Confidence 3599999999999999999999987766667654332 02468899
Q ss_pred cCCCCCceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEecccCCCc-cEEEcceeeCCCC-C-eeEEEecCCCCCCCCc
Q 026204 134 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS-GRIEVPISRDPNN-R-IRMAAIPGSNKHGQAR 210 (241)
Q Consensus 134 RLD~~TSGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~G~~~~~~-~~i~~~i~~~~~~-~-~~~~~~~~~~~~~~~k 210 (241)
|||++||||||||+|.++++.|+++ .+.++|+|+|+|.|.++.+. +.+..++..+... . ....... ....
T Consensus 49 RLD~~TSGlll~ak~~~~~~~l~~~--~~~v~K~Y~a~v~G~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~-----~~~~ 121 (189)
T 2oml_A 49 RLDRDSEGLLVLTNNGALQARLTQP--GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD-----EPAW 121 (189)
T ss_dssp CCCTTCEEEEEEESCHHHHHHHHST--TSCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEEC-----CCTT
T ss_pred CCCCCCeeEEEEEcCHHHHHHHhCc--cCCCcEEEEEEEcCCCCHHHHHHHHcCceeCCceeeeeEEEEec-----cccc
Confidence 9999999999999999999999996 67899999999999987654 3566676533211 1 1111111 1122
Q ss_pred ceEEEEEEEEEecCCCEEEEEEEcCCCCCCC
Q 026204 211 HAASRYKVIEILAGGGSALVEWRLETGRTHQ 241 (241)
Q Consensus 211 ~a~T~~~vl~~~~~~~~slv~~~l~TGR~HQ 241 (241)
.+.|.|+++... ..++|+++|+|.|||+||
T Consensus 122 ~~~t~~~v~~~~-~~~~slv~~~l~TGR~HQ 151 (189)
T 2oml_A 122 LWPRNPPIRERK-SIPTSWLKITLYEGRNRQ 151 (189)
T ss_dssp CCCCSSCCC-CT-TSCEEEEEEEESCCCTTH
T ss_pred cccccccccccc-CCCcEEEEEEEeeCCCHH
Confidence 346888888752 247999999999999999
No 6
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=99.97 E-value=1.3e-32 Score=235.05 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=119.1
Q ss_pred eEEecCeec-CCCceecCCCEEEEEecCCCCccCCCCCCCccEEEecCc-EEEEECCCCceeecCCCCCCCCHHHHHHHh
Q 026204 15 ALFLSMDKL-SVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDN-VLVVNKPAHMVVHPAPGNATGTLVNGILHH 92 (241)
Q Consensus 15 ~v~vng~~~-~~~~~l~~GD~i~~~~~~~~~~~~~~~~~~~~Ilyed~~-llVinKPaGl~~~~~~~~~~~tl~~~l~~~ 92 (241)
.|.|||+++ ++++.|.+||.|.+. +..|+|||++ ++|+|||+||+||+..+. ..|+.+.|..+
T Consensus 28 ~V~VNG~~v~~~~~~v~~gD~I~v~--------------~~~i~~ed~~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~~ 92 (243)
T 1vio_A 28 AVKINGEIVKSGSVQISQEDEIYFE--------------DELLTWIEEGQYFMLNKPQGCVCSNDDGD-YPTIYQFFDYP 92 (243)
T ss_dssp CEEETTEECCCTTCEECTTSCEEET--------------TEECCSSCCCCEEEEEECTTCBSSCCC---CCBGGGGSCTT
T ss_pred cEEECCEEeCCCCCCcCCCCEEEEe--------------ccccccCCCCEEEEEECCCCCEeCCCCCC-CCcHHHHHhHH
Confidence 489999998 599999999988873 1248999999 999999999999998764 56776654432
Q ss_pred cCCCccccccccccccccccccccccccccCCCCCCccccccCCCCCceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEE
Q 026204 93 CSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLT 172 (241)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV 172 (241)
+ ..++++|||||++||||||||+|++++..+.. +.+.++|+|+|+|
T Consensus 93 ~--------------------------------~~~~~~vhRLD~~TsGlll~ak~~~~a~~l~~--~~~~v~K~Y~a~v 138 (243)
T 1vio_A 93 L--------------------------------AGKLHSAGRLDVDTTGLVLLTDDGQWSHRITS--PKHHCEKTYLVTL 138 (243)
T ss_dssp G--------------------------------GGGCEESSCCCTTCEEEEEEESCHHHHHHHHC--TTSCCCEEEEEEE
T ss_pred h--------------------------------cCCEeEccCCCCCCeEEEEEEECHHHHHHHhC--CCCCCCEEEEEEE
Confidence 1 13578899999999999999999998888865 7889999999999
Q ss_pred ecccCCCccEEEcceeeCCCCCeeEEEecCCCCCCCCcceEEEEEEEEEecCCCEEEEEEEcCCCCCCC
Q 026204 173 SGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241 (241)
Q Consensus 173 ~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~~slv~~~l~TGR~HQ 241 (241)
.|.++.+ .|+.+.. . +.+.. ....+++|. |++++ +|+++|+|.||||||
T Consensus 139 ~g~~~~~--~i~~~~~--g-----~~~~~---~~~~~~~a~--~~~l~------~sl~~~~l~tGR~HQ 187 (243)
T 1vio_A 139 ADPVEEN--YSAACAE--G-----ILLRG---EKEPTKPAK--LEILD------DYNVNLTISEGRYHQ 187 (243)
T ss_dssp SSCCCTT--HHHHHHH--C-----CCCTT---CSSCCCCCE--EEECS------SSEEEEEESCCCTTH
T ss_pred eCCCCHH--HHHHHhC--C-----eEECC---CCccceeEE--EEEeC------CEEEEEEEccCCcHH
Confidence 9998765 2333321 0 00111 011356665 45553 599999999999999
No 7
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=99.97 E-value=8.2e-32 Score=226.39 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=99.2
Q ss_pred CccEEEecCcEEEEECCCCceeecCCCCCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCcccc
Q 026204 53 PLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIV 132 (241)
Q Consensus 53 ~~~Ilyed~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 132 (241)
.+.|||||++++|+|||+|++||+..+....|+.+.+. ..++++|
T Consensus 31 ~~~Ilyed~~~lvvnKP~Gl~~~~~~~~~~~tl~~~l~-----------------------------------~~~~~~V 75 (217)
T 2olw_A 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----------------------------------VQGVYAA 75 (217)
T ss_dssp ------CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC-----------------------------------CCSCEES
T ss_pred cCceEeeCCcEEEEECCCCCEeccCCCCCCccHHHHhC-----------------------------------cCCceEC
Confidence 56799999999999999999999987766667655332 0246889
Q ss_pred ccCCCCCceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEecccCCCc-cEEEcceeeCC-CC-CeeEEEecCCCCCCCC
Q 026204 133 HRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSS-GRIEVPISRDP-NN-RIRMAAIPGSNKHGQA 209 (241)
Q Consensus 133 hRLD~~TSGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~G~~~~~~-~~i~~~i~~~~-~~-~~~~~~~~~~~~~~~~ 209 (241)
||||++||||||||+|.++++.|++. .+.++|+|+|+|.|.++.+. +.|..++..+. .. .....+... ..
T Consensus 76 hRLDr~TSGllllAk~~~~~~~L~~~--~~~v~K~Y~A~V~G~~~~~~~~~i~~~i~~~~g~~~~~~~~~~~~-----~~ 148 (217)
T 2olw_A 76 GRLDRDSEGLLVLTNNGALQARLTQP--GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDE-----PA 148 (217)
T ss_dssp SCCCTTCEEEEEEESCHHHHHHHHCT--TCCCCEEEEEEEESCCCHHHHHHHHHCCEETTEECCCCEEEEECC-----CT
T ss_pred CCCCCCCeeEEEEEcCHHHHHHHHcc--cccCCEEEEEEEccCCCHHHHHHHhCCEEeCCCcccceEEEEecC-----Cc
Confidence 99999999999999999999999995 67899999999999987655 45666664321 11 111111110 00
Q ss_pred cceEEEEEEEEEecCCCEEEEEEEcCCCCCCC
Q 026204 210 RHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241 (241)
Q Consensus 210 k~a~T~~~vl~~~~~~~~slv~~~l~TGR~HQ 241 (241)
.+.+.+.++......++|+++|+|.|||+||
T Consensus 149 -~~~~~~~~v~~~~~~~~slv~~~l~TGRtHQ 179 (217)
T 2olw_A 149 -WLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 (217)
T ss_dssp -TCCCCSSCCC-CCSSCEEEEEEEESCCCTTH
T ss_pred -cccccccceeccCCCCcEEEEEEECcCCCHH
Confidence 1122222222222247899999999999999
No 8
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=99.95 E-value=1.5e-29 Score=220.67 Aligned_cols=157 Identities=20% Similarity=0.241 Sum_probs=116.1
Q ss_pred eEEecCeecCCCceecCCCEEEEEecCCCCccCCCCCCCccEEEecCcEEEEECCCCceeecCCCCCCCCHHHHHHHhcC
Q 026204 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCS 94 (241)
Q Consensus 15 ~v~vng~~~~~~~~l~~GD~i~~~~~~~~~~~~~~~~~~~~Ilyed~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~ 94 (241)
.|.|||+++++++.|.+||.|.+...... + ..|||++|+|+|||+|++||+.... ..|+.+.+..
T Consensus 32 ~V~VNG~~v~~~~~V~~gD~I~v~~~~i~-----~------~~~ed~~~lvvnKP~G~~~~~~~~~-~~tl~~~l~~--- 96 (290)
T 3dh3_A 32 NVFLNGKRATIGDQVKPGDVVKVNGQLIE-----P------REAEDLVLIALNKPVGIVSTTEDGE-RDNIVDFVNH--- 96 (290)
T ss_dssp CEEETTEECCTTCEECTTCCEEETTEEEC-----C------CCGGGCCEEEEEECTTCBCCCCSSC-TTBHHHHHTC---
T ss_pred CEEECCEEccCCcCcCCCCEEEecccccc-----c------cccccceEEEEECCCccccCCCCCC-CCcHHHHhhc---
Confidence 48999999999999999999999542211 1 1278999999999999999998754 5688776642
Q ss_pred CCccccccccccccccccccccccccccCCCCCCccccccCCCCCceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEec
Q 026204 95 LPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSG 174 (241)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TSGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~G 174 (241)
..++++|||||++||||||||+|.++++.|.+ +.+.++|+|+|+|.|
T Consensus 97 -------------------------------~~~~~~VhRLD~dTSGLllla~d~~~~~~L~~--~~~~v~K~Y~a~V~G 143 (290)
T 3dh3_A 97 -------------------------------SKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR--AGNDHEKEYLVTVDK 143 (290)
T ss_dssp -------------------------------SSCCEESSCCCTTCEEEEEEESCTTHHHHHHC--GGGCCCEEEEEEESS
T ss_pred -------------------------------cCceeeeccCCCCCcceEEEcCCHHHHHHHHH--hhCCcCEEEEEEECC
Confidence 14678899999999999999999999999988 567899999999999
Q ss_pred ccCCCccEEEcceeeCCCCCeeEEEecCCCCCCCCcceEEEEEEEEEecCCCEEEEEEEcCCCCCCC
Q 026204 175 VPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEWRLETGRTHQ 241 (241)
Q Consensus 175 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~~slv~~~l~TGR~HQ 241 (241)
.++++.. . .+. .+ . .. . ....+++. ++. .+.++++|.|.|||+||
T Consensus 144 ~~~~~~i--~-~l~-~G---v--~l-~----~~~~~~~~--v~~------~~~~~l~l~l~tGR~HQ 188 (290)
T 3dh3_A 144 PITEEFI--R-GMS-AG---V--PI-L----GTVTKKCK--VKK------EAPFVFRITLVQGLNRQ 188 (290)
T ss_dssp CCCHHHH--H-HHH-TC---C--BC-S----SSBCCCCE--EEE------CSSSEEEEEESCCCTTH
T ss_pred CCCHHHH--H-HHh-cC---c--cc-C----CcccceEE--EEE------cCCeEEEEEEeCCCChH
Confidence 9865431 1 010 00 0 00 1 00112232 222 24589999999999998
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.91 E-value=3.5e-25 Score=187.43 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=91.7
Q ss_pred cCcEEEEECCCCceeecCCCCCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCccccccCCCCC
Q 026204 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 139 (241)
Q Consensus 60 d~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~T 139 (241)
++.|||+|||+|++|++... ...|+.+.+.. ..++++|||||++|
T Consensus 13 ~~~~lvlnKPaG~vs~~~~~-~~~tv~dll~~----------------------------------~~rl~~VgRLD~dT 57 (237)
T 2gml_A 13 DLVLIALNKPVGIVSTTEDG-ERDNIVDFVNH----------------------------------SKRVFPIGRLDKDS 57 (237)
T ss_dssp CCCEEEEEECTTCBCCSSSS-CSSBHHHHSCC----------------------------------SSCCEEESCCCTTC
T ss_pred CCEEEEEECCCCCEeCCCCC-CCCCHHHHhhc----------------------------------cCCeeEecCCCCCC
Confidence 46799999999999998755 45677765421 13578999999999
Q ss_pred ceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEecccCCCccEEEcceeeCCCCCeeEEEecCCCCCCCCcceEEEEEEE
Q 026204 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVI 219 (241)
Q Consensus 140 SGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~G~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl 219 (241)
|||||||+|.+++.+|.+ +.+.++|+|+|+|.|.++++.. +. +. . + +.+ . +++.+.+.++++
T Consensus 58 SGLLLlT~dg~~a~~L~~--p~~~v~K~Y~a~V~G~~~~~~i--~~-l~-~--G---v~l-~------~~~~~~a~~~~l 119 (237)
T 2gml_A 58 QGLIFLTNHGDLVNKILR--AGNDHEKEYLVTVDKPITEEFI--RG-MS-A--G---VPI-L------GTVTKKCKVKKE 119 (237)
T ss_dssp EEEEEEESCHHHHHHHHH--HHHHSCEEEEEEESSCCCHHHH--HH-HS-S--C---CEE-T------TEECCCCEEEEE
T ss_pred eeEEEEEcCHHHHHHHhC--ccCCCCEEEEEEEcccCCHHHH--HH-HH-c--C---eEe-C------CcccccEEEEEe
Confidence 999999999999999988 6778999999999999865431 11 11 0 0 111 1 233344556666
Q ss_pred EEecCCCEEEEEEEcCCCCCCC
Q 026204 220 EILAGGGSALVEWRLETGRTHQ 241 (241)
Q Consensus 220 ~~~~~~~~slv~~~l~TGR~HQ 241 (241)
. .++++|.|.|||+||
T Consensus 120 ~------~s~l~i~L~tGR~HQ 135 (237)
T 2gml_A 120 A------PFVFRITLVQGLNRQ 135 (237)
T ss_dssp E------TTEEEEEECCCSTTH
T ss_pred C------CEEEEEEEecCCcHH
Confidence 3 389999999999999
No 10
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=97.32 E-value=0.00021 Score=62.58 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=56.4
Q ss_pred CcEEEEECCCCceeecCCCCCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCccccccCCCCCc
Q 026204 61 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140 (241)
Q Consensus 61 ~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TS 140 (241)
+.+++||||+||-+| .++..++..+. ..+++..+.||-..|
T Consensus 25 ~Gil~vdKP~G~TS~--------dvv~~vr~~l~-------------------------------~kKvGH~GTLDP~At 65 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYN-------------------------------ANRAGHTGALDPLAT 65 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHhhc-------------------------------cceeccCCCCCCCCe
Confidence 569999999999875 47777877654 256788999999999
Q ss_pred eEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEe-cc
Q 026204 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GV 175 (241)
Q Consensus 141 Glll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~-G~ 175 (241)
|+|+++-...+ ++...+.. ..|+|.|.+. |.
T Consensus 66 GvL~i~~G~aT--Kl~~~l~~--~~K~Y~a~~~lG~ 97 (327)
T 1k8w_A 66 GMLPICLGEAT--KFSQYLLD--SDKRYRVIARLGQ 97 (327)
T ss_dssp EEEEEEEGGGG--GGTHHHHT--SCEEEEEEEEETE
T ss_pred eEEEEEECHHH--hHHHHhcc--CCcEEEEEEEECC
Confidence 99999998753 35555554 3899999876 44
No 11
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=97.30 E-value=0.00017 Score=63.60 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=56.6
Q ss_pred cCcEEEEECCCCceeecCCCCCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCccccccCCCCC
Q 026204 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 139 (241)
Q Consensus 60 d~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~T 139 (241)
.+.+++||||+|+-+| .++..+...+. ..+.+..+-||-..
T Consensus 45 ~~Gil~vdKP~g~tS~--------~vv~~vr~~~~-------------------------------~~KvGH~GTLDP~a 85 (334)
T 2aus_C 45 QYGVINLDKPPGPTSH--------EVVAWIKRILN-------------------------------LEKAGHGGTLDPKV 85 (334)
T ss_dssp HTEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTC
T ss_pred cCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------cceeccccccCCcc
Confidence 4679999999999875 47778877764 25678899999999
Q ss_pred ceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEe
Q 026204 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 173 (241)
Q Consensus 140 SGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~ 173 (241)
||+|+++-... .++.+.+.. ..|+|.|.+.
T Consensus 86 tGvL~v~~g~a--Tk~~~~l~~--~~K~Y~~~~~ 115 (334)
T 2aus_C 86 SGVLPVALERA--TRVVQALLP--AGKEYVALMH 115 (334)
T ss_dssp EEEEEEEEGGG--GGGGGGGTT--CCEEEEEEEE
T ss_pred ceeEEEEeChh--hhhHHHhcc--cCcEEEEEEE
Confidence 99999999753 356565655 5899999876
No 12
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=97.26 E-value=0.00018 Score=62.55 Aligned_cols=70 Identities=21% Similarity=0.341 Sum_probs=56.0
Q ss_pred CcEEEEECCCCceeecCCCCCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCccccccCCCCCc
Q 026204 61 DNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGTS 140 (241)
Q Consensus 61 ~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~TS 140 (241)
+.++++|||+|+-|| .++..++..+. ..+.+..+.||-..|
T Consensus 3 ~Gil~vdKP~G~TS~--------~vv~~vrr~l~-------------------------------~kKvGH~GTLDP~At 43 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLK-------------------------------TRKVGHGGTLDPFAC 43 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTCE
T ss_pred CeEEEEECCCCCCHH--------HHHHHHHHHhc-------------------------------cceecccccCCCCcc
Confidence 469999999999875 47788887764 256788999999999
Q ss_pred eEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEe
Q 026204 141 GLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 173 (241)
Q Consensus 141 Glll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~ 173 (241)
|+|+++-.+. .++...+.. ..|+|.|.+.
T Consensus 44 GvL~i~iG~a--TKl~~~l~~--~~K~Y~a~~~ 72 (309)
T 1r3e_A 44 GVLIIGVNQG--TRILEFYKD--LKKVYWVKMR 72 (309)
T ss_dssp EEEEEEEGGG--GGGGGGGTT--SCEEEEEEEE
T ss_pred eeEEEEECHH--HhHHHHhCc--cCcEEEEEEE
Confidence 9999999874 355555554 4899999876
No 13
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2
Probab=97.18 E-value=0.00024 Score=61.93 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=56.7
Q ss_pred cCcEEEEECCCCceeecCCCCCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCccccccCCCCC
Q 026204 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 139 (241)
Q Consensus 60 d~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~T 139 (241)
.+.++++|||.||-|| .++..++..+. ..+++..+.||-..
T Consensus 5 ~~Gil~vdKP~G~TS~--------dvv~~vrr~l~-------------------------------~kKvGH~GTLDP~A 45 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFA-------------------------------TRRVGHAGTLDPMA 45 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTC
T ss_pred CCeEEEEECCCCCCHH--------HHHHHHHHHhc-------------------------------cccccccccCCCCC
Confidence 3579999999999875 47788887764 25678899999999
Q ss_pred ceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEe
Q 026204 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 173 (241)
Q Consensus 140 SGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~ 173 (241)
||+|+++-.+. .++...+.. ..|+|.|.+.
T Consensus 46 tGvL~i~iG~a--TKl~~~l~~--~~K~Y~~~~~ 75 (316)
T 1sgv_A 46 TGVLVIGIERA--TKILGLLTA--APKSYAATIR 75 (316)
T ss_dssp EEEEEEEEGGG--GGGGGGTTT--SCEEEEEEEE
T ss_pred eEEEEEEECHH--HhHHHHhCc--CCcEEEEEEE
Confidence 99999999874 345555544 5999999876
No 14
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=97.18 E-value=0.00025 Score=62.91 Aligned_cols=71 Identities=21% Similarity=0.269 Sum_probs=56.9
Q ss_pred cCcEEEEECCCCceeecCCCCCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCccccccCCCCC
Q 026204 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKGT 139 (241)
Q Consensus 60 d~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~T 139 (241)
.+.+++||||+|+-+| .++..++..+. ..+.+..+-||-..
T Consensus 65 ~~Gil~vdKP~G~TS~--------~vv~~vr~~l~-------------------------------~~KvGH~GTLDP~A 105 (357)
T 2apo_A 65 KYGVVVVDKPRGPTSH--------EVSTWVKKILN-------------------------------LDKAGHGGTLDPKV 105 (357)
T ss_dssp HTEEEEEEECSSSCHH--------HHHHHHHHHTT-------------------------------CSCEEESSCCCTTC
T ss_pred cCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------ccccccccccCCCc
Confidence 5679999999999875 47788887764 25678899999999
Q ss_pred ceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEe
Q 026204 140 SGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS 173 (241)
Q Consensus 140 SGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~ 173 (241)
||+|+++-... .++...+.. ..|+|.|.+.
T Consensus 106 tGvL~v~~G~a--Tk~~~~l~~--~~K~Y~~~~~ 135 (357)
T 2apo_A 106 TGVLPVALERA--TKTIPMWHI--PPKEYVCLMH 135 (357)
T ss_dssp EEEEEEEEGGG--GGGGGGTTS--SCEEEEEEEE
T ss_pred eeEEEEEeCHH--HhHHHHhcc--CCcEEEEEEE
Confidence 99999999753 356565655 7899999876
No 15
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=97.00 E-value=0.00054 Score=61.45 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=57.3
Q ss_pred ecCcEEEEECCCCceeecCCCCCCCCHHHHHHHhcCCCccccccccccccccccccccccccccCCCCCCccccccCCCC
Q 026204 59 EDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSLPTLASSNQEAFSDAEDISDDEEFSSSISGASIRPGIVHRLDKG 138 (241)
Q Consensus 59 ed~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vhRLD~~ 138 (241)
-.+.+|+||||+|+-+| .++..++..+. ..+.+..+-||-.
T Consensus 57 ~~~Gil~ldKP~G~TS~--------dvv~~vrr~l~-------------------------------~kKvGH~GTLDP~ 97 (400)
T 3u28_A 57 ISSGVINLDKPSNPSSH--------EVVAWIKRILR-------------------------------CEKTGHSGTLDPK 97 (400)
T ss_dssp HHTEEEEEEECSSSCHH--------HHHHHHHHHHT-------------------------------CSCEEESSCCCTT
T ss_pred ccCcEEEEECCCCCCHH--------HHHHHHHHHhC-------------------------------cCcccccCCCCCC
Confidence 34689999999999876 47788887764 2567889999999
Q ss_pred CceEEEeecCHHHHHHHHHHhhcCeeeEEEEEEEe-cc
Q 026204 139 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTS-GV 175 (241)
Q Consensus 139 TSGlll~Ak~~~~~~~L~~~f~~~~v~K~Y~AlV~-G~ 175 (241)
.||+|+++-.+. .++...+.. ..|+|.|.+. |.
T Consensus 98 AtGvL~v~iG~a--TKl~~~l~~--~~K~Y~a~~~lG~ 131 (400)
T 3u28_A 98 VTGCLIVCIDRA--TRLVKSQQG--AGKEYVCIVRLHD 131 (400)
T ss_dssp CEEEEEEEEGGG--GGGHHHHHH--SCEEEEEEEEESS
T ss_pred CeEEEEEEEChH--HhHhHHhcC--CCcEEEEEEEeCC
Confidence 999999999763 344455544 5899999875 44
No 16
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=96.71 E-value=0.00055 Score=48.73 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=34.4
Q ss_pred eEEecCeecCCCceecCCCEEEEEecCCCCc-c-------CCCCCCCccEEEecCcE
Q 026204 15 ALFLSMDKLSVSHNVKGGDMVNCTISELQPL-R-------AEAEDIPLDIVYEDDNV 63 (241)
Q Consensus 15 ~v~vng~~~~~~~~l~~GD~i~~~~~~~~~~-~-------~~~~~~~~~Ilyed~~l 63 (241)
.|+|||+++++++.|++||.|.+...+.... . .......+.++|||+++
T Consensus 27 ~V~VNg~~~~~~~~v~~gd~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~lyed~~~ 83 (92)
T 2k6p_A 27 AVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIAPKTK 83 (92)
T ss_dssp CCEETTEECCTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSEEECCC
T ss_pred cEEECCEEcCCCCCcCCCCEEEEEeCCceEEEEEeccccccCCCHHHHHHHHHhcCC
Confidence 3899999999999999999999976442211 0 01222347899998764
No 17
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=90.47 E-value=0.22 Score=37.68 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=23.9
Q ss_pred eEEecCeecCCCceecCCCEEEEEecC
Q 026204 15 ALFLSMDKLSVSHNVKGGDMVNCTISE 41 (241)
Q Consensus 15 ~v~vng~~~~~~~~l~~GD~i~~~~~~ 41 (241)
.|.|||+++++++.|..||.|.|....
T Consensus 35 ~V~VNG~~vk~s~~V~~GD~I~I~~~~ 61 (133)
T 1dm9_A 35 KVHYNGQRSKPSKIVELNATLTLRQGN 61 (133)
T ss_dssp CEEETTEECCTTCBCCTTCEEEEEETT
T ss_pred cEEECCEEcCCCCEeCCCCEEEEEeCC
Confidence 389999999999999999999997643
No 18
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=89.94 E-value=0.16 Score=36.32 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=24.6
Q ss_pred eeEEecCeecCCCceecCCCEEEEEec
Q 026204 14 LALFLSMDKLSVSHNVKGGDMVNCTIS 40 (241)
Q Consensus 14 ~~v~vng~~~~~~~~l~~GD~i~~~~~ 40 (241)
.+|-|||+.++.++.|+.||+|+|+..
T Consensus 59 ~~V~Vng~~v~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 59 NKIGIFSRPIKLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp SEEEEEECSCCTTCBCCTTCEEEECCC
T ss_pred cEEEEcCEECCCCccCCCCCEEEEEec
Confidence 578999999999999999999999754
No 19
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=85.97 E-value=0.81 Score=30.53 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=22.4
Q ss_pred eEEecCeecCCCceecCCCEEEEE
Q 026204 15 ALFLSMDKLSVSHNVKGGDMVNCT 38 (241)
Q Consensus 15 ~v~vng~~~~~~~~l~~GD~i~~~ 38 (241)
.+.|||+.+..++.|+.||+|.+.
T Consensus 48 ~v~vNg~~v~~~~~L~~gD~V~i~ 71 (77)
T 2q5w_D 48 QVAVNEEFVQKSDFIQPNDTVALI 71 (77)
T ss_dssp EEEETTEEECTTSEECTTCEEEEE
T ss_pred EEEECCEECCCCCCcCCCCEEEEE
Confidence 689999999999999999999985
No 20
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=83.46 E-value=0.89 Score=31.34 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=23.8
Q ss_pred eeeEEecCeecCCCceecCCCEEEEEe
Q 026204 13 VLALFLSMDKLSVSHNVKGGDMVNCTI 39 (241)
Q Consensus 13 ~~~v~vng~~~~~~~~l~~GD~i~~~~ 39 (241)
...+.|||+.+..++.|+.||+|.+..
T Consensus 58 ~~~v~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 58 HINVLRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp TSEEEETTEECCTTSBCCTTCEEEEEC
T ss_pred cEEEEECCEECCCCcccCCCCEEEEEC
Confidence 357899999999999999999999953
No 21
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=81.30 E-value=1 Score=34.98 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.6
Q ss_pred eEEecCeec-CCCceecCCCEEEEEec
Q 026204 15 ALFLSMDKL-SVSHNVKGGDMVNCTIS 40 (241)
Q Consensus 15 ~v~vng~~~-~~~~~l~~GD~i~~~~~ 40 (241)
.|.|||+++ ++++.|.+||.|.+...
T Consensus 77 ~V~VNG~~v~~ps~~V~~gD~I~V~~~ 103 (159)
T 1c05_A 77 HILVDGSRVNIPSYRVKPGQTIAVREK 103 (159)
T ss_dssp CEEETTEECCCSSCBCCTTCEEEECGG
T ss_pred CEEECCEEeCcCCcEeCCCCEEEEeCc
Confidence 489999998 59999999999999643
No 22
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=80.64 E-value=1.6 Score=29.30 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=22.2
Q ss_pred eEEecCeecCCCceecCCCEEEEE
Q 026204 15 ALFLSMDKLSVSHNVKGGDMVNCT 38 (241)
Q Consensus 15 ~v~vng~~~~~~~~l~~GD~i~~~ 38 (241)
.+.|||+.+..++.|+.||+|.+.
T Consensus 52 ~v~vN~~~v~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 52 LAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_dssp EEEETTEECCTTCBCCTTCEEEEE
T ss_pred EEEECCEECCCCCCCCCCCEEEEe
Confidence 599999999999999999999985
No 23
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=80.49 E-value=0.58 Score=31.76 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=20.6
Q ss_pred eEEecCeec-CCCceecCCCEEEEE
Q 026204 15 ALFLSMDKL-SVSHNVKGGDMVNCT 38 (241)
Q Consensus 15 ~v~vng~~~-~~~~~l~~GD~i~~~ 38 (241)
.|+|||+++ ++++.|.+||.|.+.
T Consensus 47 ~V~VNG~~v~~~~~~v~~gd~I~v~ 71 (79)
T 1p9k_A 47 QVKVDGAVETRKRCKIVAGQTVSFA 71 (79)
T ss_dssp HHEETTBCCCCSSCCCCSSEEEEET
T ss_pred EEEECCEEecCCCCCCCCCCEEEEC
Confidence 389999987 689999999988873
No 24
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=80.43 E-value=1.3 Score=31.22 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=24.0
Q ss_pred eeeeEEecCeecCCCceecCCCEEEEE
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNCT 38 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~~ 38 (241)
+...|.|||+.+..++.|+.||+|.+.
T Consensus 66 ~~v~v~VNg~~v~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 66 ADVNIAVNGRYVSWDEELKDGDVVGVF 92 (98)
T ss_dssp SSBEEEETTBCCCTTCBCCTTCEEEEE
T ss_pred CcEEEEECCEECCCCCCCCCCCEEEEE
Confidence 445799999999999999999999985
No 25
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=79.81 E-value=1.2 Score=30.45 Aligned_cols=30 Identities=10% Similarity=0.235 Sum_probs=25.5
Q ss_pred eeeeeEEecCeecCCCceecCCCEEEEEec
Q 026204 11 VSVLALFLSMDKLSVSHNVKGGDMVNCTIS 40 (241)
Q Consensus 11 ~~~~~v~vng~~~~~~~~l~~GD~i~~~~~ 40 (241)
..+.+..|||+.+..++.|+.||.|++.-.
T Consensus 39 ~~~v~AkVNG~~v~L~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 39 NRMIGAKVDGRIVPIDYKVKTGEIIDVLTT 68 (78)
T ss_dssp HTEEEEEETTEEECTTCBCCTTCBEEEEEC
T ss_pred cceEEEEECCEEcCCCcccCCCCEEEEEcc
Confidence 345678899999999999999999999653
No 26
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=79.10 E-value=2.1 Score=28.17 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=22.4
Q ss_pred eEEecCeecCCCceecCCCEEEEEe
Q 026204 15 ALFLSMDKLSVSHNVKGGDMVNCTI 39 (241)
Q Consensus 15 ~v~vng~~~~~~~~l~~GD~i~~~~ 39 (241)
.+-+||+.+..+..|+.||+|.+..
T Consensus 41 ~vavN~~~v~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 41 VVKKNGQIVIDEEEIFDGDIIEVIR 65 (70)
T ss_dssp EEEETTEECCTTSBCCTTCEEEEEE
T ss_pred EEEECCEECCCcccCCCCCEEEEEe
Confidence 5889999999999999999999853
No 27
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=78.14 E-value=1.7 Score=28.07 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.4
Q ss_pred eEEecCeecCCC----ceecCCCEEEEEe
Q 026204 15 ALFLSMDKLSVS----HNVKGGDMVNCTI 39 (241)
Q Consensus 15 ~v~vng~~~~~~----~~l~~GD~i~~~~ 39 (241)
+|.+||+.+..+ +.|+.||+|.+..
T Consensus 31 ~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 31 AVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 699999988754 8999999999953
No 28
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=77.86 E-value=1.4 Score=35.76 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.6
Q ss_pred eEEecCeecC-CCceecCCCEEEEEec
Q 026204 15 ALFLSMDKLS-VSHNVKGGDMVNCTIS 40 (241)
Q Consensus 15 ~v~vng~~~~-~~~~l~~GD~i~~~~~ 40 (241)
.|.|||++++ +++.|.+||.|.+...
T Consensus 125 ~V~VNG~~v~~ps~~V~~gD~I~V~~~ 151 (209)
T 2vqe_D 125 HITVNGRRVDLPSYRVRPGDEIAVAEK 151 (209)
T ss_dssp CEEETTEECCCTTCBCCTTCEEEECGG
T ss_pred CEEECCEEeCcCCcCcCCCCEEEEcCc
Confidence 4899999985 9999999999999643
No 29
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=76.88 E-value=1.9 Score=31.99 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.7
Q ss_pred eeEEecCeecCCCceecCCCEEEE
Q 026204 14 LALFLSMDKLSVSHNVKGGDMVNC 37 (241)
Q Consensus 14 ~~v~vng~~~~~~~~l~~GD~i~~ 37 (241)
...+|||+++.....|+.||+|.+
T Consensus 90 ngt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 90 TRTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CCEEETTEECCSCEEECTTCEEEE
T ss_pred CCEEECCEEcCCcEECCCCCEEEE
Confidence 468999999987799999999988
No 30
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=76.73 E-value=0.67 Score=31.32 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=22.0
Q ss_pred eEEecCeecCCCceecCCCEEEEE
Q 026204 15 ALFLSMDKLSVSHNVKGGDMVNCT 38 (241)
Q Consensus 15 ~v~vng~~~~~~~~l~~GD~i~~~ 38 (241)
.|.|||+.+..++.|+.||+|.+.
T Consensus 48 ~VavNg~~v~~~~~L~dGD~V~i~ 71 (77)
T 1rws_A 48 IAKVNGKVVLEDDEVKDGDFVEVI 71 (77)
T ss_dssp CEEETTEEECSSSCCCSSCCCBCS
T ss_pred EEEECCEECCCCCCcCCCCEEEEE
Confidence 689999999999999999999884
No 31
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=76.63 E-value=1.2 Score=29.87 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=23.8
Q ss_pred ccceeeeeEEecCeecCC----CceecCCCEEEEEe
Q 026204 8 FNQVSVLALFLSMDKLSV----SHNVKGGDMVNCTI 39 (241)
Q Consensus 8 ~~~~~~~~v~vng~~~~~----~~~l~~GD~i~~~~ 39 (241)
+....| +|-+||+.+.. ++.|+.||+|.+..
T Consensus 26 ~~~~~v-AV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 26 CTGGHF-AVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCSSSC-EEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred CCCCcE-EEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 444444 79999998764 57999999999953
No 32
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=74.73 E-value=1.3 Score=29.86 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=23.2
Q ss_pred ccceeeeeEEecCeecCCCceecCCCEEEEE
Q 026204 8 FNQVSVLALFLSMDKLSVSHNVKGGDMVNCT 38 (241)
Q Consensus 8 ~~~~~~~~v~vng~~~~~~~~l~~GD~i~~~ 38 (241)
+....+ .|.+||+.+..+..+. ||+|.+.
T Consensus 32 l~~~~V-vV~vNG~~v~~d~~l~-GD~VeIv 60 (74)
T 2l32_A 32 LSPHEV-TVLVDGRPVPEDQSVE-VDRVKVL 60 (74)
T ss_dssp CCSSCC-CEECCCCCCCTTSSSC-CCCEEEC
T ss_pred CCcceE-EEEECCEECCHHHCCC-CCEEEEE
Confidence 344455 6899999999998775 9999994
No 33
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=73.71 E-value=3 Score=27.59 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=22.7
Q ss_pred eeeEEecCee-cCCCceecCCCEEEEEe
Q 026204 13 VLALFLSMDK-LSVSHNVKGGDMVNCTI 39 (241)
Q Consensus 13 ~~~v~vng~~-~~~~~~l~~GD~i~~~~ 39 (241)
...+.|||+. ...++.|++||+|.+..
T Consensus 42 ~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 42 VCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp TCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred ccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 4568999998 66899999999999853
No 34
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=73.71 E-value=1.9 Score=29.22 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.1
Q ss_pred eEEecCeecCCC----ceecCCCEEEEE
Q 026204 15 ALFLSMDKLSVS----HNVKGGDMVNCT 38 (241)
Q Consensus 15 ~v~vng~~~~~~----~~l~~GD~i~~~ 38 (241)
+|-+||+.+..+ +.|+.||+|.+.
T Consensus 36 AVavNg~iVpr~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 36 TVELNGEVLEREAFDATTVKDGDAVEFL 63 (78)
T ss_dssp CEEETTEECCTTHHHHCEECSSBCEEEC
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEE
Confidence 799999998765 899999999994
No 35
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=73.67 E-value=3.8 Score=33.83 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=30.1
Q ss_pred EEecCeecCCCceec-CCCEEEEEecCCCCccCCCCCCCccEEEecCcEEEE
Q 026204 16 LFLSMDKLSVSHNVK-GGDMVNCTISELQPLRAEAEDIPLDIVYEDDNVLVV 66 (241)
Q Consensus 16 v~vng~~~~~~~~l~-~GD~i~~~~~~~~~~~~~~~~~~~~Ilyed~~llVi 66 (241)
+++||++++....|+ .||.|.+. .+.+.+..+++.|+
T Consensus 137 vyvNg~~i~~~~~L~~~GD~I~ig--------------~~~~~~~~~~l~i~ 174 (238)
T 1wv3_A 137 VYINYELQEQLTNKAYIGDHIYVE--------------GIWLEVQADGLNVL 174 (238)
T ss_dssp EEETTEECCSSEEEEETTCEEEET--------------TEEEEECSSEEEEE
T ss_pred EEECCEEeccceeccCCcCEEEEC--------------CEEEEEECCEEEEE
Confidence 799999999888999 99999992 34567777777773
No 36
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=73.55 E-value=2.8 Score=29.15 Aligned_cols=25 Identities=4% Similarity=0.012 Sum_probs=20.3
Q ss_pred eEEecCeecCC----CceecCCCEEEEEe
Q 026204 15 ALFLSMDKLSV----SHNVKGGDMVNCTI 39 (241)
Q Consensus 15 ~v~vng~~~~~----~~~l~~GD~i~~~~ 39 (241)
+|-|||+.+.. ++.|+.||+|.|..
T Consensus 54 aVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 54 IVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 58899998764 67899999998853
No 37
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=72.72 E-value=2.2 Score=32.83 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=22.4
Q ss_pred eeeeEEecCeecCCCceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~ 37 (241)
|-...+|||+++.....|+.||+|.+
T Consensus 108 S~ngt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 108 EGADTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp TTCCEEETTEECCSCEECCTTCEEEE
T ss_pred CCCceEECCEEcCCceECCCCCEEEE
Confidence 44568999999987789999999988
No 38
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=72.47 E-value=2 Score=34.73 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=22.4
Q ss_pred eEEecCeec-CCCceecCCCEEEEEec
Q 026204 15 ALFLSMDKL-SVSHNVKGGDMVNCTIS 40 (241)
Q Consensus 15 ~v~vng~~~-~~~~~l~~GD~i~~~~~ 40 (241)
.|.|||+++ ++++.|.+||.|.+...
T Consensus 115 ~V~VNG~~V~~pS~~V~~gD~I~V~~~ 141 (201)
T 3bbn_D 115 HILVNGRIVDIPSYRCKPQDTIMARDE 141 (201)
T ss_dssp CEEETTEECCCTTCBCCTTEEEEECSS
T ss_pred cEEeCCEEEeecceecCCCCEEEEccc
Confidence 389999987 59999999999999643
No 39
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=72.01 E-value=1.9 Score=28.00 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.5
Q ss_pred eEEecCeecCC----CceecCCCEEEEEe
Q 026204 15 ALFLSMDKLSV----SHNVKGGDMVNCTI 39 (241)
Q Consensus 15 ~v~vng~~~~~----~~~l~~GD~i~~~~ 39 (241)
+|.+||+.+.. ++.|+.||+|.+..
T Consensus 33 ~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 69999998875 78999999999853
No 40
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=71.19 E-value=3.3 Score=28.59 Aligned_cols=27 Identities=11% Similarity=0.346 Sum_probs=22.8
Q ss_pred eeeEEecCeecC----CCceecCCCEEEEEe
Q 026204 13 VLALFLSMDKLS----VSHNVKGGDMVNCTI 39 (241)
Q Consensus 13 ~~~v~vng~~~~----~~~~l~~GD~i~~~~ 39 (241)
...|.|||+.+. .++.|+.||+|.+..
T Consensus 58 ~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 58 FVNIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp TEEEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred CEEEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 457899999887 589999999999854
No 41
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=70.36 E-value=3 Score=30.44 Aligned_cols=26 Identities=8% Similarity=0.132 Sum_probs=22.3
Q ss_pred eeeeEEecCeecCCCceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~ 37 (241)
|-...+|||+++.....|+.||+|.+
T Consensus 78 S~ngt~vNg~~i~~~~~L~~GD~I~i 103 (120)
T 1wln_A 78 MDAETYVDGQRISETTMLQSGMRLQF 103 (120)
T ss_dssp SSSCEEETSCBCSSCEEECTTCEEEE
T ss_pred CCCCEEECCEEcCCCEECCCCCEEEE
Confidence 45668999999987779999999988
No 42
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=69.72 E-value=3.4 Score=26.92 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=24.2
Q ss_pred eeeeEEecCeecCCCceecCCCEEEEEe
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNCTI 39 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~~~ 39 (241)
.+.++.|||+.+..++.|..||.|.+.-
T Consensus 35 ~~vaa~vNg~lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 35 HCIGAKVNHKLVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp TEEEEEETTEECCTTCBCCSSSBEEEEE
T ss_pred ceEEEEECCEEeCCCcCcCCCCEEEEEE
Confidence 4566789999999999999999999854
No 43
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=67.11 E-value=4.4 Score=27.57 Aligned_cols=25 Identities=8% Similarity=0.356 Sum_probs=21.6
Q ss_pred eeEEecCeecC----CCceecCCCEEEEE
Q 026204 14 LALFLSMDKLS----VSHNVKGGDMVNCT 38 (241)
Q Consensus 14 ~~v~vng~~~~----~~~~l~~GD~i~~~ 38 (241)
..|.|||+.+. .++.|+.||+|.+.
T Consensus 56 v~v~vN~~~v~~~~~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 56 VIILVNGNNITSMKGLDTEIKDDDKIDLF 84 (90)
T ss_dssp CEEEESSSBGGGTCSSSCBCCTTCEEEEE
T ss_pred eEEEECCEEccccCCCCcCCCCCCEEEEe
Confidence 46999999886 68899999999884
No 44
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=66.73 E-value=3.3 Score=31.53 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=24.8
Q ss_pred ccceeeeeEEecCeecCCC-ceecCCCEEEE
Q 026204 8 FNQVSVLALFLSMDKLSVS-HNVKGGDMVNC 37 (241)
Q Consensus 8 ~~~~~~~~v~vng~~~~~~-~~l~~GD~i~~ 37 (241)
..+.|-...+|||+++..+ ..|+.||.|.+
T Consensus 81 l~DlS~NGT~VNg~~i~~~~~~L~~GD~I~l 111 (151)
T 2jqj_A 81 VIDKSRNGTFINGNRLVKKDYILKNGDRIVF 111 (151)
T ss_dssp EEECCSSCEEETTEECCSSCEEECSSEEEEE
T ss_pred EEECCCCCeEECCEEcCCCceECCCCCEEEE
Confidence 3455778899999999874 88999999988
No 45
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=66.06 E-value=4.1 Score=30.29 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.1
Q ss_pred eeeeEEecCeecCCC--ceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVS--HNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~--~~l~~GD~i~~ 37 (241)
|-+..+|||+++.++ ..|+.||.|.+
T Consensus 92 StNGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 92 STHGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp CSSCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CCCceEECCEECCCCceeECCCCCEEEE
Confidence 667789999999865 47999999998
No 46
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=64.34 E-value=2.5 Score=30.05 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=22.2
Q ss_pred eeeeEEecCeecCCCceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~ 37 (241)
|-...+|||+++.....|+.||.|.+
T Consensus 67 S~nGt~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 67 SKNGVIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp CSSCCEETTEECSSEEECCTTCCEEE
T ss_pred CCCCeEECCEECCCCeECCCCCEEEE
Confidence 55667899999887679999999988
No 47
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=63.09 E-value=3.2 Score=30.91 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.7
Q ss_pred eeeeEEecCeecCCCceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~ 37 (241)
|-+..+|||+++.. ..|+.||.|.+
T Consensus 80 S~NGT~vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 80 SVNGLMINGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp CSSCEEETTEEESE-EECCTTCEEEC
T ss_pred CCCceEECCEEeEe-EECCCCCEEEE
Confidence 88899999999876 89999999988
No 48
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=62.55 E-value=1 Score=36.56 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.8
Q ss_pred eEEecCeec-CCCceecCCCEEEEEe
Q 026204 15 ALFLSMDKL-SVSHNVKGGDMVNCTI 39 (241)
Q Consensus 15 ~v~vng~~~-~~~~~l~~GD~i~~~~ 39 (241)
.|.|||+++ ++++.|++||.|.+..
T Consensus 121 ~V~VNG~~V~~ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 121 AIMVNGRVVNIASYQVSPNDVVSIRE 146 (205)
T ss_dssp CCBSSSSBCCCTTCBCCTTBCCBCCS
T ss_pred CEEECCEEEccCCcCcCCCCEEEecC
Confidence 388999988 5999999999998854
No 49
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=60.23 E-value=6 Score=27.81 Aligned_cols=24 Identities=8% Similarity=0.264 Sum_probs=21.2
Q ss_pred eEEecCeec----CCCceecCCCEEEEE
Q 026204 15 ALFLSMDKL----SVSHNVKGGDMVNCT 38 (241)
Q Consensus 15 ~v~vng~~~----~~~~~l~~GD~i~~~ 38 (241)
.|.|||+.+ ..++.|+.||+|.+.
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 799999987 578999999999884
No 50
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.63 E-value=8.1 Score=32.04 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=20.8
Q ss_pred EEecCeecC-CCceecCCCEEEEE
Q 026204 16 LFLSMDKLS-VSHNVKGGDMVNCT 38 (241)
Q Consensus 16 v~vng~~~~-~~~~l~~GD~i~~~ 38 (241)
|.|||++++ +.+.+..+|+|++.
T Consensus 71 I~VdGKvr~d~~ypvG~mDVIsI~ 94 (243)
T 3j20_E 71 FLVDGRVRKDYKFPVGIMDVVSIP 94 (243)
T ss_dssp CEETTEECCCSSCEECTTCEEEET
T ss_pred EEECCEEeccccCCcccceEEEec
Confidence 789999876 89999999999994
No 51
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=56.29 E-value=12 Score=30.34 Aligned_cols=23 Identities=9% Similarity=-0.011 Sum_probs=20.9
Q ss_pred eEEecCeecC-CCceecCCCEEEE
Q 026204 15 ALFLSMDKLS-VSHNVKGGDMVNC 37 (241)
Q Consensus 15 ~v~vng~~~~-~~~~l~~GD~i~~ 37 (241)
.|.|||++++ +.+.+..+|.|++
T Consensus 35 ~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 35 LVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp CEEETTEECCCTTCEECTTCEEEE
T ss_pred CEEECCEEecccCCCccceeEEEe
Confidence 3889999876 8999999999999
No 52
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=55.69 E-value=7.8 Score=28.89 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=23.3
Q ss_pred eeeeEEecCeecCC--CceecCCCEEEEE
Q 026204 12 SVLALFLSMDKLSV--SHNVKGGDMVNCT 38 (241)
Q Consensus 12 ~~~~v~vng~~~~~--~~~l~~GD~i~~~ 38 (241)
|-+..+|||+++.. ...|+.||.|.+-
T Consensus 73 S~NGT~vNg~~l~~~~~~~L~~GD~I~lG 101 (138)
T 2pie_A 73 SLNGVWLNRARLEPLRVYSIHQGDYIQLG 101 (138)
T ss_dssp CSSCEEETTEECCTTCCEECCTTCEEEES
T ss_pred CCCCeEECCEEcCCCCcEECCCCCEEEEC
Confidence 67778999999887 5889999999994
No 53
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.10 E-value=3.5 Score=27.39 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=19.6
Q ss_pred eEEecCeec-CCCceecC--CCEEEEE
Q 026204 15 ALFLSMDKL-SVSHNVKG--GDMVNCT 38 (241)
Q Consensus 15 ~v~vng~~~-~~~~~l~~--GD~i~~~ 38 (241)
.|.|||+++ ++++.|.+ +|.|.+.
T Consensus 34 ~V~Vng~~v~kps~~V~~~~~d~I~~~ 60 (71)
T 2cqj_A 34 HVRVGPDVVTDPAFLVTRSMEDFVTWV 60 (71)
T ss_dssp CEEETTBCCCCTTCEEEHHHHTTEEES
T ss_pred cEEECCEEECCCCCCCCCCCCcEEEEE
Confidence 389999987 59999998 7888763
No 54
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=54.63 E-value=5.7 Score=27.76 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.2
Q ss_pred eeeeEEecCeecCCCceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~ 37 (241)
|-...+|||+++. ...|+.||.|.+
T Consensus 63 S~nGt~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 63 STNGTTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp CSSCCEETTEECS-EEECCTTCEEEE
T ss_pred CCCCEEECCEECc-eEECCCCCEEEE
Confidence 5667899999887 578999999988
No 55
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=54.18 E-value=6 Score=29.99 Aligned_cols=30 Identities=7% Similarity=0.106 Sum_probs=24.3
Q ss_pred cceeeeeEEecCeecCC--CceecCCCEEEEE
Q 026204 9 NQVSVLALFLSMDKLSV--SHNVKGGDMVNCT 38 (241)
Q Consensus 9 ~~~~~~~v~vng~~~~~--~~~l~~GD~i~~~ 38 (241)
.+.|-+..+|||+++.+ ...|+.||.|.+-
T Consensus 98 ~D~StNGT~VNg~~i~~~~~~~L~~GD~I~lG 129 (149)
T 1gxc_A 98 EDHSGNGTFVNTELVGKGKRRPLNNNSEIALS 129 (149)
T ss_dssp EECCSSCEEETTEECCTTCEEECCTTEEEEES
T ss_pred EECCCCCeEECCEECCCCCeEECCCCCEEEEC
Confidence 34577889999999885 5688999999983
No 56
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=53.73 E-value=8.5 Score=29.68 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=24.7
Q ss_pred cceeeeeEEecCeecCCC--ceecCCCEEEEE
Q 026204 9 NQVSVLALFLSMDKLSVS--HNVKGGDMVNCT 38 (241)
Q Consensus 9 ~~~~~~~v~vng~~~~~~--~~l~~GD~i~~~ 38 (241)
.+.|-+..+|||+++..+ ..|..||.|.+-
T Consensus 102 ~DlS~NGT~vNg~~i~~~~~~~L~~GD~I~iG 133 (164)
T 1g3g_A 102 NDISTNGTWLNGQKVEKNSNQLLSQGDEITVG 133 (164)
T ss_dssp EECCSSCEEETTEEECTTEEEECCTTCEEEES
T ss_pred EECCCCCeEECCEEcCCCCceEcCCCCEEEEC
Confidence 344778899999999874 789999999983
No 57
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=53.68 E-value=7.2 Score=28.61 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=24.4
Q ss_pred cceeeeeEEecCeecCC--CceecCCCEEEEE
Q 026204 9 NQVSVLALFLSMDKLSV--SHNVKGGDMVNCT 38 (241)
Q Consensus 9 ~~~~~~~v~vng~~~~~--~~~l~~GD~i~~~ 38 (241)
.+.|-...+|||+++.. ...|..||.|.+-
T Consensus 74 ~DlS~NGT~vNg~~l~~~~~~~L~~Gd~I~lG 105 (127)
T 1g6g_A 74 NDISTNGTWLNGQKVEKNSNQLLSQGDEITVG 105 (127)
T ss_dssp EECCSSCCEETTEECCTTCCEECCTTCEEEEC
T ss_pred EECCcCCeEECCEEcCCCCeEEcCCCCEEEEC
Confidence 34477788999999886 4789999999994
No 58
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=53.40 E-value=4.6 Score=29.69 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.5
Q ss_pred eeeeEEecCeecCCCceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~ 37 (241)
|-+..+|||+++.....|+.||.|.+
T Consensus 73 S~nGt~vNg~~i~~~~~L~~Gd~i~i 98 (128)
T 1r21_A 73 STNPTQVNGSVIDEPVRLKHGDVITI 98 (128)
T ss_dssp SSSCCEETTEECSSCEECCTTEEEEC
T ss_pred CCCCEEECCEECCCcEEcCCCCEEEE
Confidence 56778999999886789999999988
No 59
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=53.14 E-value=8.4 Score=27.68 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.5
Q ss_pred eeeeEEecCeecCCCceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~ 37 (241)
|-...+|||+++. ...|+.||.|.+
T Consensus 71 S~nGt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 71 SLNGTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp CSSCEEETTEECS-EEEECTTCEEEE
T ss_pred CCCCeEECCEEcc-eEECCCCCEEEE
Confidence 6677899999988 478999999988
No 60
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=51.97 E-value=11 Score=29.38 Aligned_cols=25 Identities=16% Similarity=0.273 Sum_probs=22.2
Q ss_pred eeEEecCeecCC----CceecCCCEEEEE
Q 026204 14 LALFLSMDKLSV----SHNVKGGDMVNCT 38 (241)
Q Consensus 14 ~~v~vng~~~~~----~~~l~~GD~i~~~ 38 (241)
..|.|||+.+.. ++.|+.||+|.+.
T Consensus 53 v~VaVNg~~v~~~~~~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 53 VSVFLEGRDVRYLQGLSTPLSPGATLDLF 81 (168)
T ss_dssp CEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred EEEEECCEECCCcCCCccCCCCCCEEEEE
Confidence 469999999887 8999999999985
No 61
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=51.64 E-value=5.2 Score=28.92 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.8
Q ss_pred eeeeEEecCeecCC--CceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSV--SHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~--~~~l~~GD~i~~ 37 (241)
|-+..+|||+++.+ ...|+.||.|.+
T Consensus 74 S~nGT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 74 SSNGTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp CSSCCEESSSBCCTTCEEECCTTEEEEE
T ss_pred CCCCeEECCEECCCCCeEEcCCCCEEEE
Confidence 56678999999886 467899999988
No 62
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=50.04 E-value=13 Score=25.86 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=20.6
Q ss_pred eEEecCeecC----CCceecCCCEEEEEe
Q 026204 15 ALFLSMDKLS----VSHNVKGGDMVNCTI 39 (241)
Q Consensus 15 ~v~vng~~~~----~~~~l~~GD~i~~~~ 39 (241)
-+.||++-+. .++.|+.||+|.+..
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 4999998653 688999999998853
No 63
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=49.51 E-value=5.3 Score=28.72 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=24.3
Q ss_pred ceeeeeEEecCeecCC--CceecCCCEEEEEe
Q 026204 10 QVSVLALFLSMDKLSV--SHNVKGGDMVNCTI 39 (241)
Q Consensus 10 ~~~~~~v~vng~~~~~--~~~l~~GD~i~~~~ 39 (241)
+-|-...+|||+++.. ...|+.||.|.+-.
T Consensus 64 D~S~NGt~vng~~l~~~~~~~L~~GD~i~~G~ 95 (116)
T 1lgp_A 64 DTSTSGTVINKLKVVKKQTCPLQTGDVIYLVY 95 (116)
T ss_dssp ECSSSCCCCCCCCCCCSSCCCCCTTCEEEEEC
T ss_pred ECCcCCcEECCEEcCCCCcEECCCCCEEEEec
Confidence 3566778899998876 47899999999954
No 64
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=48.48 E-value=8.4 Score=29.00 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=23.5
Q ss_pred eeeeEEecCeecCC--CceecCCCEEEEEe
Q 026204 12 SVLALFLSMDKLSV--SHNVKGGDMVNCTI 39 (241)
Q Consensus 12 ~~~~v~vng~~~~~--~~~l~~GD~i~~~~ 39 (241)
|-+..+|||+++.. ...|+.||.|.+-.
T Consensus 81 S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 81 SLNGVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp CSSCEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred CCCCeEECCEECCCCccEECCCCCEEEECC
Confidence 66778999999887 48899999999943
No 65
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=48.43 E-value=5.5 Score=31.46 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=26.0
Q ss_pred ccceeeeeEEecCeecCCC--ceecCCCEEEEEe
Q 026204 8 FNQVSVLALFLSMDKLSVS--HNVKGGDMVNCTI 39 (241)
Q Consensus 8 ~~~~~~~~v~vng~~~~~~--~~l~~GD~i~~~~ 39 (241)
..+.|-+..+|||+++..+ ..|..||.|.+..
T Consensus 101 l~DlStNGT~VNg~ri~~~~~~~L~~GD~I~l~~ 134 (182)
T 1qu5_A 101 YCHTGTNVSYLNNNRMIQGTKFLLQDGDEIKIIW 134 (182)
T ss_dssp ECCCSSSCCEETTEECCSSEEEECCTTBCCEEEE
T ss_pred EEECCcCCeEECCEEcCCCcceEcCCCCEEEEEE
Confidence 3455888899999999874 7899999999943
No 66
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=47.87 E-value=5 Score=30.84 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=24.6
Q ss_pred cceeeeeEEecCeecCCC--ceecCCCEEEEE
Q 026204 9 NQVSVLALFLSMDKLSVS--HNVKGGDMVNCT 38 (241)
Q Consensus 9 ~~~~~~~v~vng~~~~~~--~~l~~GD~i~~~ 38 (241)
.+.|-+..+|||+++..+ ..|+.||.|.+.
T Consensus 78 ~DlStNGT~VNg~ri~~~~~~~L~~GD~I~l~ 109 (158)
T 1dmz_A 78 CHTGTNVSYLNNNRMIQGTKFLLQDGDEIKII 109 (158)
T ss_dssp EECSTTCCEETTEECCSSEEEECCSSCCEESC
T ss_pred EECCcCCeEECCEEcCCCceEEcCCCCEEEEe
Confidence 445777789999999874 789999999984
No 67
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=45.74 E-value=7.4 Score=29.39 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=21.4
Q ss_pred eeeeEEecCeecCCCceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~ 37 (241)
|-+..+|||+++. ...|+.||.|.+
T Consensus 106 S~NGT~VNg~~i~-~~~L~~GD~I~i 130 (143)
T 2kb3_A 106 SLNGTYVNREPRN-AQVMQTGDEIQI 130 (143)
T ss_dssp CSSCCEETTEECS-EEECCTTEEEEE
T ss_pred CcCCeEECCEEcc-eEECCCCCEEEE
Confidence 5667889999988 578999999988
No 68
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=43.19 E-value=14 Score=26.73 Aligned_cols=29 Identities=3% Similarity=0.052 Sum_probs=22.8
Q ss_pred eeeeeEEecCeec----CCCceecCCCEEEEEe
Q 026204 11 VSVLALFLSMDKL----SVSHNVKGGDMVNCTI 39 (241)
Q Consensus 11 ~~~~~v~vng~~~----~~~~~l~~GD~i~~~~ 39 (241)
++...|+|||+-+ ..++.|+.||.|.|..
T Consensus 71 r~~i~VlVN~~di~~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 71 RPGILVLINDADWELLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp CSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred cCCeEEEECCeeeeccCCcCcCCCCCCEEEEeC
Confidence 4556799999854 3689999999998843
No 69
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=42.65 E-value=12 Score=28.87 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.5
Q ss_pred eeeeEEecCeecCCCceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~ 37 (241)
|-+..+|||+++. ...|+.||.|.+
T Consensus 115 S~NGT~VNg~~i~-~~~L~~GD~I~i 139 (162)
T 2kfu_A 115 SLNGTYVNREPVD-SAVLANGDEVQI 139 (162)
T ss_dssp CSSCEEETTBCCS-EEECCSSCEEEE
T ss_pred CCCCeEECCEEcc-eEECCCCCEEEE
Confidence 6677899999887 478999999988
No 70
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=42.47 E-value=8.6 Score=28.69 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=21.7
Q ss_pred eeeeEEecCeecCC----------CceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSV----------SHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~----------~~~l~~GD~i~~ 37 (241)
|-+..+|||+++.. ...|+.||.|.+
T Consensus 74 S~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 74 SLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp CSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred CCCCEEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 66778999999874 678999999988
No 71
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=41.67 E-value=12 Score=26.67 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=23.8
Q ss_pred ccceeeeeEEecCeecCCC--ceecCCCEEEEE
Q 026204 8 FNQVSVLALFLSMDKLSVS--HNVKGGDMVNCT 38 (241)
Q Consensus 8 ~~~~~~~~v~vng~~~~~~--~~l~~GD~i~~~ 38 (241)
.++...+-.++||+++..+ +.|+.||.+++-
T Consensus 58 vk~lg~Np~~vng~~l~k~~~~~L~~GD~l~Ll 90 (102)
T 3kt9_A 58 VKQVGVNPTSIDSVVIGKDQEVKLQPGQVLHMV 90 (102)
T ss_dssp EEECSSSCCEETTEECCBTCEEEECTTCCEEEE
T ss_pred EEECcCCCCeECCEEcCCCCeEEeCCCCEEEEc
Confidence 4455566678899988765 888999999884
No 72
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.35 E-value=6.5 Score=31.11 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=20.7
Q ss_pred eEEecCeecC-CCceecCC--CEEEEE
Q 026204 15 ALFLSMDKLS-VSHNVKGG--DMVNCT 38 (241)
Q Consensus 15 ~v~vng~~~~-~~~~l~~G--D~i~~~ 38 (241)
.|.|||+++. +++.|.+| |.|.+.
T Consensus 129 ~V~VNg~~V~~Ps~~V~~~~eD~I~v~ 155 (180)
T 3j20_D 129 HIEVNGQIIRSPSYLVLKEEEDTITYA 155 (180)
T ss_dssp CCEESSSBCCCSSCCCCTGGGGCEECS
T ss_pred CeEECCEEeCCCCcccCCCCCCEEEEe
Confidence 3889999875 99999999 888884
No 73
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=41.10 E-value=18 Score=26.08 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=21.0
Q ss_pred eeEEecCeec----CCCceecCCCEEEEEe
Q 026204 14 LALFLSMDKL----SVSHNVKGGDMVNCTI 39 (241)
Q Consensus 14 ~~v~vng~~~----~~~~~l~~GD~i~~~~ 39 (241)
.-|+|||+-+ ..++.|+.||.|.+..
T Consensus 68 IlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 68 ILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp EEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred eEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 4589999875 3689999999988843
No 74
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=40.59 E-value=8.6 Score=29.58 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.0
Q ss_pred eeeeEEecCeecCCC--ceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSVS--HNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~~--~~l~~GD~i~~ 37 (241)
|-+..+|||+++..+ ..|+.||+|.+
T Consensus 115 StNGT~VNg~ri~~~~~~~L~~GD~I~~ 142 (158)
T 3els_A 115 SSNGTCLNNVVIPGARYIELRSGDVLTL 142 (158)
T ss_dssp CSSCCEETTEECCTTCCEECCTTEEEES
T ss_pred CCCccEECCEEcCCCceEEcCCCCEEEE
Confidence 666789999998874 68999999988
No 75
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=39.13 E-value=16 Score=27.05 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=20.5
Q ss_pred eeeeEEecCeec--C--CCceecCCCEEEE
Q 026204 12 SVLALFLSMDKL--S--VSHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~--~--~~~~l~~GD~i~~ 37 (241)
|-+..+|||+++ . ....|+.||.|.+
T Consensus 87 S~NGT~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 87 SLNGTQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp CSSCEEETTTTEEECTTCCEECCTTCEEEE
T ss_pred CCCCeEECCEEcccCCCCEEECCCCCEEEE
Confidence 666789999874 3 3567999999988
No 76
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=38.35 E-value=8.2 Score=28.81 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.0
Q ss_pred eeeeEEecCeecCC--CceecCCCEEEE
Q 026204 12 SVLALFLSMDKLSV--SHNVKGGDMVNC 37 (241)
Q Consensus 12 ~~~~v~vng~~~~~--~~~l~~GD~i~~ 37 (241)
|-+..+|||+++.+ ...|..||.|.+
T Consensus 98 S~NGT~vNg~~l~~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 98 STHGTFLGHIRLEPHKPQQIPIDSTVSF 125 (140)
T ss_dssp CSSCEESSSCEECSSSCCEECTTCCBBC
T ss_pred CCCCeEECCEECCCCccEECCCCCEEEE
Confidence 66778999999884 578999999988
No 77
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.07 E-value=2.3 Score=34.19 Aligned_cols=25 Identities=12% Similarity=0.027 Sum_probs=20.9
Q ss_pred EEecCeecC-CCceecCCCEEEEEec
Q 026204 16 LFLSMDKLS-VSHNVKGGDMVNCTIS 40 (241)
Q Consensus 16 v~vng~~~~-~~~~l~~GD~i~~~~~ 40 (241)
|.|||+++. |++.|.+||.+.|.+.
T Consensus 136 V~VNG~~V~~Ps~~V~~gde~~I~~~ 161 (195)
T 3iz6_C 136 IRVGRQIVNIPSFMVRVESEKHIDFS 161 (195)
T ss_dssp TTTSCCCCCCCCCCCSSSCSSSSCSS
T ss_pred EEECCEEeCCCCcCcCCCCEEEEEec
Confidence 679999876 9999999998877543
No 78
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=37.61 E-value=10 Score=29.92 Aligned_cols=25 Identities=8% Similarity=0.044 Sum_probs=19.6
Q ss_pred eEEecCeecC-CCceecCCCEEEEEe
Q 026204 15 ALFLSMDKLS-VSHNVKGGDMVNCTI 39 (241)
Q Consensus 15 ~v~vng~~~~-~~~~l~~GD~i~~~~ 39 (241)
.|.|||+++. +++.|.+||.+.|.+
T Consensus 133 ~V~VNg~~V~~Ps~~V~~~d~~~I~v 158 (181)
T 2xzm_D 133 HIKVGKNLVNVPSFMVRTDSEKSIDF 158 (181)
T ss_dssp CCEETTEECCCSCCBCCSTTSSCEEC
T ss_pred EEEECCEEECCCCcCCCCCCceEEEE
Confidence 4899999875 999999998544443
No 79
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=35.74 E-value=29 Score=24.62 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=22.9
Q ss_pred ceeeeeEEecCeecC---CCceecCCCEEEEEe
Q 026204 10 QVSVLALFLSMDKLS---VSHNVKGGDMVNCTI 39 (241)
Q Consensus 10 ~~~~~~v~vng~~~~---~~~~l~~GD~i~~~~ 39 (241)
+++-=.+++||+.+. .++.|+.||.|.+.+
T Consensus 65 ~~~yW~~~vng~~~~~Ga~~~~v~dGD~i~~~~ 97 (101)
T 3u7z_A 65 KQQWWCITKGGEQVNTSADQTPVSDGDAFELTL 97 (101)
T ss_dssp GTEEEEEEETTEECCSCGGGCBCCTTCEEEEEE
T ss_pred CCCEEEEEECCEEhhhchhheEecCCCEEEEEE
Confidence 344444688999876 477999999999975
No 80
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=32.73 E-value=11 Score=26.98 Aligned_cols=26 Identities=4% Similarity=0.147 Sum_probs=20.1
Q ss_pred ccceeeee-EEecCeecCCCceecCCCE
Q 026204 8 FNQVSVLA-LFLSMDKLSVSHNVKGGDM 34 (241)
Q Consensus 8 ~~~~~~~~-v~vng~~~~~~~~l~~GD~ 34 (241)
|+-.|-.. |+|||+++ ....|..||.
T Consensus 55 ~~l~S~nGtVFVNGqrv-~~~~I~~gDt 81 (102)
T 3uv0_A 55 VRLAALVGKIFVNDQEE-TVVDIGMENA 81 (102)
T ss_dssp EEEEESSSCEEETTEEE-SEEEECGGGC
T ss_pred EEEEeccCcEEECCEEe-eeEEccCCcc
Confidence 33347777 99999999 6678888887
No 81
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=30.64 E-value=22 Score=24.04 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=26.5
Q ss_pred cCcEEEEECCCCceeecCCCCCCCCHHHHHHHhc
Q 026204 60 DDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 93 (241)
Q Consensus 60 d~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~ 93 (241)
|..+=|+|+|-|....+.......+|.++|..+-
T Consensus 24 e~pVPViN~~dGtrL~Ge~AP~~KdL~dWLrqhP 57 (80)
T 2ckc_A 24 DTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHP 57 (80)
T ss_dssp TCBCCEEETTTTEEECTTSSCBHHHHHHHHHHCT
T ss_pred CCccceeecCCCcccccccCccccCHHHHHHHCC
Confidence 4456789999999988776666668889888763
No 82
>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=29.48 E-value=28 Score=23.84 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=28.8
Q ss_pred ecCcEEEEECCCCceeecCCCCCCCCHHHHHHHhc
Q 026204 59 EDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 93 (241)
Q Consensus 59 ed~~llVinKPaGl~~~~~~~~~~~tl~~~l~~~~ 93 (241)
-|+.+-||||+.|...++.......+|.++|..+-
T Consensus 16 ~EerVpVi~~~tG~~l~G~~AP~~k~L~~WLk~nP 50 (83)
T 2dl6_A 16 LETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHP 50 (83)
T ss_dssp TTSBCCEECSSSCCEECGGGSCBSTTHHHHHHHCT
T ss_pred CCcceeeEeCCCCccccCCCchhHhHHHHHHhHCC
Confidence 46678899999999998877676778999997763
No 83
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=27.06 E-value=97 Score=20.14 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=15.9
Q ss_pred ceeeeeEEecCeec--CCCceecCCCEEEEEe
Q 026204 10 QVSVLALFLSMDKL--SVSHNVKGGDMVNCTI 39 (241)
Q Consensus 10 ~~~~~~v~vng~~~--~~~~~l~~GD~i~~~~ 39 (241)
+..|.+|.-+|+.. .+++.+++||.|.+..
T Consensus 40 ~~~i~~I~R~~~~~~p~~~~~l~~GD~l~v~g 71 (86)
T 3jxo_A 40 DSIIAAIVRGGVLVVPRGDTEILSGDKLYVIV 71 (86)
T ss_dssp SEEEEEEEETTEEECCCTTCBCCTTCEEEEEE
T ss_pred CCEEEEEEECCEEECCCCCCEECCCCEEEEEE
Confidence 34455555555432 2455666666666644
No 84
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=25.31 E-value=25 Score=24.63 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.1
Q ss_pred ecCeecCCCceecCCCEEEEEec
Q 026204 18 LSMDKLSVSHNVKGGDMVNCTIS 40 (241)
Q Consensus 18 vng~~~~~~~~l~~GD~i~~~~~ 40 (241)
.||+++-.++.|+.||.|+|...
T Consensus 65 ~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 65 HNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp SSSEEECSSCCCCSSEEECEEEC
T ss_pred CCCEECCCCcEecCCCEEEEEeC
Confidence 38999999999999999999653
No 85
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=25.20 E-value=38 Score=22.64 Aligned_cols=28 Identities=0% Similarity=-0.100 Sum_probs=22.9
Q ss_pred eeeeEEecCeecCCCceecCCCEEEEEe
Q 026204 12 SVLALFLSMDKLSVSHNVKGGDMVNCTI 39 (241)
Q Consensus 12 ~~~~v~vng~~~~~~~~l~~GD~i~~~~ 39 (241)
.+.+..|||+.+..++.|..|+.|++--
T Consensus 45 ~~vaakvNg~l~dL~~~l~~d~~ve~vt 72 (88)
T 1wwt_A 45 NTVIAKVNNVVWDLDRPLEEDCTLELLK 72 (88)
T ss_dssp GCCCEEESSSEECSSSCCCSSEEEEECS
T ss_pred ceEEEEECCEEECCCcCcCCCCEEEEEe
Confidence 3455689999999999999999888743
No 86
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=24.94 E-value=38 Score=28.58 Aligned_cols=25 Identities=4% Similarity=0.041 Sum_probs=21.3
Q ss_pred eEEecC-e-e-cCCCceecCCCEEEEEe
Q 026204 15 ALFLSM-D-K-LSVSHNVKGGDMVNCTI 39 (241)
Q Consensus 15 ~v~vng-~-~-~~~~~~l~~GD~i~~~~ 39 (241)
.|+||| + + .++++.|.+||.|.+..
T Consensus 33 ~V~Vng~~~~v~kp~~~V~~~d~I~v~g 60 (291)
T 3hp7_A 33 LVVNVINGERYDKPGEKIDDGTELKLKG 60 (291)
T ss_dssp CEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred eEEECCeEEEEccCCCCCCCCCEEEEcc
Confidence 389999 7 5 57999999999999964
No 87
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=22.00 E-value=79 Score=22.86 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=13.8
Q ss_pred EEecCeecCCCceecCCCEEEEEe
Q 026204 16 LFLSMDKLSVSHNVKGGDMVNCTI 39 (241)
Q Consensus 16 v~vng~~~~~~~~l~~GD~i~~~~ 39 (241)
|.+||.- ...+++||.|.+..
T Consensus 72 I~lNGAA---Ar~~~~GD~vII~a 92 (114)
T 3oug_A 72 IALNGPA---ARRCEIGDQLFIIS 92 (114)
T ss_dssp EEEEGGG---GGGCCTTCEEEEEE
T ss_pred EEeCCHH---HhccCCCCEEEEEE
Confidence 4555543 34567899998854
No 88
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=21.16 E-value=1.1e+02 Score=21.35 Aligned_cols=11 Identities=45% Similarity=0.305 Sum_probs=8.3
Q ss_pred eecCCCEEEEE
Q 026204 28 NVKGGDMVNCT 38 (241)
Q Consensus 28 ~l~~GD~i~~~ 38 (241)
.|+.||.|-+.
T Consensus 58 ~VkvGD~Vl~~ 68 (95)
T 3nx6_A 58 VVKVGDKVIYG 68 (95)
T ss_dssp SCCTTCEEEEC
T ss_pred ccCCCCEEEEC
Confidence 47888988773
No 89
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=20.30 E-value=1.1e+02 Score=21.54 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=8.4
Q ss_pred eecCCCEEEEE
Q 026204 28 NVKGGDMVNCT 38 (241)
Q Consensus 28 ~l~~GD~i~~~ 38 (241)
.|+.||.|-+.
T Consensus 63 ~VkvGD~Vlf~ 73 (100)
T 1we3_O 63 EVKEGDIVVFA 73 (100)
T ss_dssp SCCTTCEEEEC
T ss_pred ecCCCCEEEEC
Confidence 37889988773
Done!