BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026205
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 23 KSFFVTGATGFLAKVLIEKILRTAPEVGKIFLLIKAESEEAASKRLKDEVINAELFKCLQ 82
++ +TGATGFL + L+ ++LR G++ L++AES+E A +RL+ + F
Sbjct: 74 RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLE------KTFDSGD 127
Query: 83 QTYGECYQDFMLNKLVPVVGNISESNLGLEGDLAKVIANEVDVIINSAANTTLHERYDIA 142
+++ ++L V G+ SE +LGL+ + +A VD+I++SAA +++
Sbjct: 128 PELLRHFKELAADRLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNAFPYHEL- 186
Query: 143 IDINTRGPSHVMNFAKKCKKIKVFVHMSTAYVN 175
N G + ++ A K+K F ++STA V
Sbjct: 187 FGPNVAGTAELIRIA-LTTKLKPFTYVSTADVG 218
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 26 FVTGATGFLAKVLIEKILRTAPEVGKIFLLIKAESEEAASKRLKDEVINAELFKCLQQTY 85
+TGATGFL LIE + + +I+ I+A++EE A + L L +
Sbjct: 154 LLTGATGFLGAYLIEALQGYS---HRIYCFIRADNEEIAWYK---------LMTNLNDYF 201
Query: 86 GECYQDFMLNKLVPVVGNISESNLGLEGDLAKVIANEVDVIINSAANTTLHERYDIAIDI 145
E + ML+ + +VG+ E V+ +D II++ A T D +
Sbjct: 202 SEETVEMMLSNIEVIVGD-------FECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKV 254
Query: 146 NTRGPSHVMNFAKKCKKIKVFV 167
N +G V+ A++ ++V
Sbjct: 255 NVQGTVDVIRLAQQHHARLIYV 276
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 26 FVTGATGFLAKVLIEKILRTAPEVGKIFLLIKAESEEAASKRLKDEVINAELFKCLQQTY 85
+TGATGFL LIE + + +I+ I+A++EE A +L L +
Sbjct: 73 LLTGATGFLGAYLIEALQGYS---HRIYCFIRADNEEIAWYKLXTN---------LNDYF 120
Query: 86 GECYQDFMLNKLVPVVGNISESNLGLEGDLAKVIANEVDVIINSAANTTLHERYDIAIDI 145
E + L+ + +VG+ E V+ D II++ A T D +
Sbjct: 121 SEETVEXXLSNIEVIVGD-------FECXDDVVLPENXDTIIHAGARTDHFGDDDEFEKV 173
Query: 146 NTRGPSHVMNFAKKCKKIKVFV 167
N +G V+ A++ ++V
Sbjct: 174 NVQGTVDVIRLAQQHHARLIYV 195
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 124 DVIINSAANTTL---HERYDIAIDINTRGPSHVMNFAKKCKKIKV-FVHMSTAYV-NGKR 178
+V+IN AA+T + E+YD+A IN GP N A + V +ST YV +G+
Sbjct: 65 NVVINCAAHTAVDKCEEQYDLAYKINAIGPK---NLAAAAYSVGAEIVQISTDYVFDGEA 121
Query: 179 QGRIME 184
+ I E
Sbjct: 122 KEPITE 127
>pdb|2G17|A Chain A, The Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase From Salmonella Typhimurium
Length = 337
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 62 EAASKRLKDEVINAELFKCLQQTYGECYQDFMLNKLVPVVGNI-----SESNLGLEGDLA 116
E + RLK V +A++ LQ+ YG+ + +K VP + N+ + ++G+
Sbjct: 244 ETITCRLKAGVTHAQVADVLQKAYGDKPLVRLYDKGVPALKNVVGLPFCDIGFAVQGEHL 303
Query: 117 KVIANEVDVIINSAA 131
V+A E +++ +AA
Sbjct: 304 IVVATEDNLLKGAAA 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,568,711
Number of Sequences: 62578
Number of extensions: 253172
Number of successful extensions: 854
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 9
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)