BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026207
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VRQ|A Chain A, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|B Chain B, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
pdb|2VRQ|C Chain C, Structure Of An Inactive Mutant Of Arabinofuranosidase
From Thermobacillus Xylanilyticus In Complex With A
Pentasaccharide
Length = 496
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 178 ERKAPPTFYFLIEMRERHYWVTHKTEKSVDMLLRGKTPLVEIRKRDDRFNVVVDRWKTY 236
E+K P T + E +WVT K +D L+ + ++++ D R +++VD W T+
Sbjct: 249 EKKGPATGFTTDE-----WWVTLKKALFMDRLVTKHSAIMDVYDPDKRIDLIVDEWGTW 302
>pdb|2VRK|A Chain A, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|B Chain B, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
pdb|2VRK|C Chain C, Structure Of A Seleno-Methionyl Derivative Of Wild Type
Arabinofuranosidase From Thermobacillus Xylanilyticus
Length = 496
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 178 ERKAPPTFYFLIEMRERHYWVTHKTEKSVDMLLRGKTPLVEIRKRDDRFNVVVDRWKTY 236
E+K P T + E +WVT K D L+ + + ++ D R +++VD W T+
Sbjct: 249 EKKGPATGFTTDE-----WWVTLKKALFXDRLVTKHSAIXDVYDPDKRIDLIVDEWGTW 302
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 27/159 (16%)
Query: 35 PGVGKTTVMREIARVLSDEFQK-RVVIVDTSNEIGGDGDIPHSAIGTARRMQV------- 86
PG GK+T + ++L++ K V+ VD S+ G S +G RM
Sbjct: 83 PGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGG-----SLLGDKTRMTELSRDMNA 137
Query: 87 ---PEPSLQ-----HKVMIEAV---ENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGT 135
P P+ + EA+ E ++I+++ +G A + + V+L+
Sbjct: 138 YIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPP 197
Query: 136 AHGEWLENIIKNPI-LSDLIGGVDTVTLGDEEARARRCQ 173
A G+ L+ I + I ++DL+ T + GD ARR Q
Sbjct: 198 AGGDELQGIKRGIIEMADLV--AVTKSDGDLIVPARRIQ 234
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 36 GVGKTTVMREIARVLSDEF 54
G GKTTV RE+AR L EF
Sbjct: 12 GCGKTTVGRELARALGYEF 30
>pdb|2AM1|A Chain A, Sp Protein Ligand 1
pdb|2AM2|A Chain A, Sp Protein Ligand 2
Length = 454
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 23/121 (19%)
Query: 17 ALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHS 76
A Y + K D F GKTT +A +LS ++ + +NEIG +P++
Sbjct: 91 ASYYLEKTTVDVFA--VTGSNGKTTTKDXLAHLLSTRYKTYKTQGNYNNEIG----LPYT 144
Query: 77 AIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTA 136
+ PE + K+++E ++H+ ++ ++ E+ A +I V L+G A
Sbjct: 145 V------LHXPEGT--EKLVLEXGQDHLGDIHLLSEL-----ARPKTAI----VTLVGEA 187
Query: 137 H 137
H
Sbjct: 188 H 188
>pdb|4BC5|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
pdb|4BC5|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
Inhibitor 5-deoxy-5-fluoro-d-xylulose
Length = 538
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 37 VGKTTVMREIARVLSDEFQKRVVIVDTSNE------------IGGDGDIPHSAI 78
G + REI +VL+D F V ++DT+N + G D+P S +
Sbjct: 441 TGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEV 494
>pdb|4BC2|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC2|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose And Adenosine Diphosphate
pdb|4BC3|A Chain A, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|B Chain B, Crystal Structure Of Human D-xylulokinase
pdb|4BC3|C Chain C, Crystal Structure Of Human D-xylulokinase
pdb|4BC4|A Chain A, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|B Chain B, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
pdb|4BC4|C Chain C, Crystal Structure Of Human D-xylulokinase In Complex With
D- Xylulose
Length = 538
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 37 VGKTTVMREIARVLSDEFQKRVVIVDTSNE------------IGGDGDIPHSAI 78
G + REI +VL+D F V ++DT+N + G D+P S +
Sbjct: 441 TGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFSEV 494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,928,287
Number of Sequences: 62578
Number of extensions: 262694
Number of successful extensions: 1047
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 11
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)