BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026207
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51281|YCF45_PORPU Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3
SV=1
Length = 565
Score = 275 bits (703), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/205 (64%), Positives = 161/205 (78%), Gaps = 1/205 (0%)
Query: 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV 86
D L +PGVGKTT +REIARVLSDE +KRVVI+DTSNEI GDGDIPH AIG ARRMQV
Sbjct: 124 DSILLLGKPGVGKTTAVREIARVLSDEMEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQV 183
Query: 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIK 146
+P LQH+VMIEAVENHMPEVII+DEIGTE EA A R+IAERGV L+GTAHG +LE++IK
Sbjct: 184 AQPDLQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNYLESLIK 243
Query: 147 NPILSDLIGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTH-KTEKS 205
NP L+DLIGG+ VTLGD+EA+ R QKSILERKA P F IE+ +R W+ H K E++
Sbjct: 244 NPTLADLIGGIQYVTLGDDEAKRRGTQKSILERKAAPAFQIAIEIHDRKAWIVHEKVEET 303
Query: 206 VDMLLRGKTPLVEIRKRDDRFNVVV 230
+D +L+G P V+ R+ D +++
Sbjct: 304 IDQILQGHQPFVQKRQIQDNGRILI 328
>sp|P49540|YCF45_ODOSI Uncharacterized protein ycf45 OS=Odontella sinensis GN=ycf45 PE=3
SV=1
Length = 455
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/189 (64%), Positives = 148/189 (78%), Gaps = 1/189 (0%)
Query: 34 RPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 93
+PGVGKTT++REIARVLSDE +KRVVIVDTSNEI GD DIPHSAIG ARRMQV LQH
Sbjct: 131 KPGVGKTTIIREIARVLSDEMEKRVVIVDTSNEIAGDSDIPHSAIGRARRMQVATTDLQH 190
Query: 94 KVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153
++MIEAVENHMP+VI++DEIGTE EA A R+IAE+GV L+GT HG LEN+IKNP LSDL
Sbjct: 191 QIMIEAVENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHGNCLENLIKNPPLSDL 250
Query: 154 IGGVDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEK-SVDMLLRG 212
IGG+ +VTL D+EA+ R QKSI+ERKA P F IE+ + W H+ K S+D+LLR
Sbjct: 251 IGGIQSVTLSDDEAKRRGTQKSIIERKAYPAFQIAIEINTENSWTIHEDIKSSIDLLLRK 310
Query: 213 KTPLVEIRK 221
++R+
Sbjct: 311 SFTGTQVRE 319
>sp|O19920|YCF45_CYACA Uncharacterized protein ycf45 OS=Cyanidium caldarium GN=ycf45 PE=3
SV=1
Length = 335
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 145/225 (64%), Gaps = 7/225 (3%)
Query: 3 RLRNVFLLIVKFFYALYSINKIIFDFF------LSYFRPGVGKTTVMREIARVLSDEFQK 56
R N+ L + I II D L RPG+GKT+ +REI+R+LS+E K
Sbjct: 94 RYGNIVGLTYRIGREFIGIGPIIRDLIESNQSTLLIGRPGIGKTSFIREISRILSNEIMK 153
Query: 57 RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 116
RV+IVD++NEI G+G PH + G ARRM+V + QH+VMIEA+ENH PE+II+DEIGTE
Sbjct: 154 RVIIVDSANEISGEGCCPHISTGKARRMEVQSINSQHEVMIEAIENHTPEIIIIDEIGTE 213
Query: 117 AEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTLGDEEARARRCQKSI 176
E+ A SI++RG+ LIG+AH L N+ KNP L L+GG+++VTL D +A R+ +K+I
Sbjct: 214 YESQAAISISQRGIRLIGSAHSSDLFNLAKNPTLCKLVGGIESVTLSDTQAILRKTKKTI 273
Query: 177 LERKAPPTFYFLIEM-RERHYWVTHKTEKSVDMLLRGKTPLVEIR 220
LERK F IE+ ++R V E+S+D +L G+ +IR
Sbjct: 274 LERKGCSCFNATIEINKKRTVKVYTSVEQSIDAILEGRVNNSQIR 318
>sp|Q01367|SP3AA_BACSU Stage III sporulation protein AA OS=Bacillus subtilis (strain 168)
GN=spoIIIAA PE=4 SV=1
Length = 307
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 15/149 (10%)
Query: 11 IVKFFYALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVV-----IVDTSN 65
++ + Y +N +I P GKTT++R++AR LS +K ++ IVD +
Sbjct: 127 LLPYLYQNSWLNTLIIG------PPQTGKTTLLRDLAR-LSSTGKKNMLPVKTGIVDERS 179
Query: 66 EIGGD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS 124
EI G IP G +R+ V + + + ++ + + PEV+IVDEIG + A
Sbjct: 180 EIAGCLRGIPQHQFG--QRIDVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLE 237
Query: 125 IAERGVMLIGTAHGEWLENIIKNPILSDL 153
GV +I +AHG + +++K P L L
Sbjct: 238 ALHAGVSVIVSAHGWSISDLMKRPSLKRL 266
>sp|P53034|RFC2_DROME Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4
PE=2 SV=1
Length = 331
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 35 PGVGKTTVMREIARV-LSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQH 93
PGVGKTT ++ +AR+ L D +++ V+ ++ SNE G D+ + I + +V P +H
Sbjct: 58 PGVGKTTTIQCLARILLGDSYKEAVLELNASNERG--IDVVRNKIKMFAQQKVTLPRGRH 115
Query: 94 KVMIEAVENHMPE 106
K++I + M E
Sbjct: 116 KIVILDEADSMTE 128
>sp|A8XGZ9|MMAA1_CAEBR Methylmalonic aciduria type A homolog, mitochondrial
OS=Caenorhabditis briggsae GN=mmaa-1 PE=3 SV=2
Length = 412
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 35/182 (19%)
Query: 16 YALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD---TSNEIGGDGD 72
Y Y + +IF +S PGVGK++ + + L++ K+V ++ TS GG
Sbjct: 116 YKKYGRDSMIFRVGIS-GSPGVGKSSFIEALGAELTENRGKKVAVLTIDPTSAMTGG--- 171
Query: 73 IPHSAIGTARRMQVPEPSLQHKVMI-----------------EAV---ENHMPEVIIVDE 112
S +G RMQ E S + I EAV E +++I++
Sbjct: 172 ---SVLGDLTRMQ--ELSRNPRAYIRQSPTSGSLGGVTRGIHEAVILCEGAGYDIVIIET 226
Query: 113 IGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI-LSDLIGGVDTVTLGDEEARARR 171
+G + + + +L+ AHG+ L+ + + + +SDL+ V T GD +A+A+
Sbjct: 227 VGVGQSETSVSDMCDMMCLLLSPAHGDELQGVKRGIMEMSDLL--VVTKDDGDLQAKAKM 284
Query: 172 CQ 173
Q
Sbjct: 285 TQ 286
>sp|Q22111|MMAA1_CAEEL Methylmalonic aciduria type A homolog, mitochondrial
OS=Caenorhabditis elegans GN=mmaa-1 PE=3 SV=2
Length = 399
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 35/182 (19%)
Query: 16 YALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD---TSNEIGGDGD 72
Y + + +IF +S PGVGK++ + + L++ K+V ++ TS GG
Sbjct: 115 YKKFGRDSMIFRVGIS-GSPGVGKSSFIEALGAELTENRGKKVAVLTIDPTSAMTGG--- 170
Query: 73 IPHSAIGTARRMQVPEPSLQHKVMI-----------------EAV---ENHMPEVIIVDE 112
S +G RMQ E S K I EAV E +++I++
Sbjct: 171 ---SVLGDLTRMQ--ELSRNPKAYIRQSPTSGSLGGVTRGIHEAVILCEGAGYDIVIIET 225
Query: 113 IGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI-LSDLIGGVDTVTLGDEEARARR 171
+G + + + +L+ AHG+ L+ + + + +SDL+ V T GD +A+A+
Sbjct: 226 VGVGQSETSVSDMCDMMCLLLSPAHGDELQGVKRGIMEMSDLL--VVTKDDGDLKAKAKM 283
Query: 172 CQ 173
Q
Sbjct: 284 TQ 285
>sp|F4IAE9|Y1591_ARATH ATPase family AAA domain-containing protein At1g05910
OS=Arabidopsis thaliana GN=At1g05910 PE=2 SV=1
Length = 1210
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 31/152 (20%)
Query: 8 FLLIVKFFYALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 67
F L+ F+A YSI L PG GKT + R +A S QK S +
Sbjct: 399 FPLLYPEFFASYSITPP--RGVLLCGPPGTGKTLIARALACAASKAGQK------VSFYM 450
Query: 68 GGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAE 127
D+ +G A R Q K++ E + + P +I DEI
Sbjct: 451 RKGADVLSKWVGEAER--------QLKLLFEEAQRNQPSIIFFDEID------------- 489
Query: 128 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159
G+ + ++ E + N I + +L+ L+ G+D+
Sbjct: 490 -GLAPVRSSKQEQIHNSIVSTLLA-LMDGLDS 519
>sp|P75242|RUVB_MYCPN Holliday junction ATP-dependent DNA helicase RuvB OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=ruvB PE=3 SV=1
Length = 307
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 21 INKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQ 55
INK D L Y PGVGKTT+ R IA ++ + Q
Sbjct: 33 INKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQ 67
>sp|Q49425|RUVB_MYCGE Holliday junction ATP-dependent DNA helicase RuvB OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=ruvB PE=3 SV=1
Length = 307
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 21 INKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQ 55
+NK D L Y PGVGKTT+ R IA L + Q
Sbjct: 33 LNKTQLDHILLYGPPGVGKTTLARLIANELKTKLQ 67
>sp|O51558|LON2_BORBU Lon protease 2 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=lon2 PE=3 SV=2
Length = 796
Score = 32.7 bits (73), Expect = 2.1, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 15 FYALYSIN-KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQK 56
F A+Y IN K+ PG+GKT+++ IAR LS EF K
Sbjct: 333 FLAVYQINSKVKAPILCLVGPPGIGKTSLVESIARSLSREFVK 375
>sp|Q5UQ72|RFCS4_MIMIV Putative replication factor C small subunit L510 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1
Length = 363
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 29 FLSYFRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP 87
FL Y PG GKT+ + + R + + FQ RV+ + S++ G + I + V
Sbjct: 43 FLFYGPPGTGKTSAILAMGREIFKEHFQNRVIEFNASDDRGINA--VREKITNEAKKYVA 100
Query: 88 EPSLQHKVMIEAVENHMPEVIIVDEIG--TEAEAHACRSIAER 128
E L+ +I + ++II+DE T+ A R I E+
Sbjct: 101 EIKLEDGTIIPSY-----KIIILDEADSMTDEAQDALRVIIEQ 138
>sp|Q96M02|CJ090_HUMAN Centrosomal protein C10orf90 OS=Homo sapiens GN=C10orf90 PE=2 SV=2
Length = 699
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 175 SILERKAPPTFYFLIEMRERHYWVTHKTEK----SVDMLLRGKTPLV 217
S++ K P L E R+ YWVTH +K S D L GK+PLV
Sbjct: 203 SVVRLKVPEAHTGLCERRK--YWVTHADDKETSFSPDTPLSGKSPLV 247
>sp|Q5PQY6|LONP2_DANRE Lon protease homolog 2, peroxisomal OS=Danio rerio GN=lonp2 PE=2
SV=1
Length = 840
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 35 PGVGKTTVMREIARVLSDEFQK 56
PGVGKT+V R IAR L EF +
Sbjct: 377 PGVGKTSVGRSIARTLGREFHR 398
>sp|A7MZI2|PNP_VIBHB Polyribonucleotide nucleotidyltransferase OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=pnp PE=3 SV=1
Length = 710
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 5 RNVFLLIVKFFYALYSINKIIFDFFLSYFRPGVGKTTVMREIAR----VLSDEFQKRVVI 60
++ F L V + Y+ KI FF RP G+T R I R + D F+ V +
Sbjct: 55 QDFFPLTVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQV 114
Query: 61 VDTSNEIGGD--GDIPHSAIGTARRMQV 86
+ T + D DIP + IGT+ + +
Sbjct: 115 IATVVSVNPDVQPDIP-TMIGTSAALAI 141
>sp|Q6MTF4|LON_MYCMS Lon protease OS=Mycoplasma mycoides subsp. mycoides SC (strain PG1)
GN=lon PE=3 SV=1
Length = 796
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 35 PGVGKTTVMREIARVLSDEFQK-RVVIVDTSNEIGGD-----GDIPHSAIGTARRMQVPE 88
PGVGKT++ R IA L +F K + V +EI G G +P I +R +V
Sbjct: 378 PGVGKTSLARSIAEALGKKFVKVSLGGVKDESEIRGHRKTYVGSMPGRIIQALKRAKVKN 437
Query: 89 P 89
P
Sbjct: 438 P 438
>sp|P93648|LONM_MAIZE Lon protease homolog, mitochondrial OS=Zea mays GN=LON2 PE=1 SV=1
Length = 964
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 35 PGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 94
PGVGKT++ R IAR L+ +F + V GG D+ + I RR V +
Sbjct: 457 PGVGKTSIGRSIARALNRQFYRFSV--------GGLADV--AEIKGHRRTYVGAMPGKMV 506
Query: 95 VMIEAVENHMPEVIIVDEIGTEAEAHA 121
+++V P ++++DEI + H+
Sbjct: 507 QCLKSVGTANP-LVLIDEIDKLGKGHS 532
>sp|Q9LQV2|RDR1_ARATH RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2
SV=1
Length = 1107
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 86 VPEPS--LQHKVMIEAVENHMPEVIIVDEIGTEAEAH 120
PEP+ L H V IE VE + I+ D +G A AH
Sbjct: 823 TPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAH 859
>sp|Q3SXY7|LRIT3_HUMAN Leucine-rich repeat, immunoglobulin-like domain and transmembrane
domain-containing protein 3 OS=Homo sapiens GN=LRIT3
PE=2 SV=2
Length = 634
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 10/51 (19%)
Query: 157 VDTVTLGDEEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEKSVD 207
VDTV L R +K+++ R + FY+L+E+ ++ WVT+ + S+D
Sbjct: 12 VDTVKL--------RIEKTVIRRISAEAFYYLVEL--QYLWVTYNSVASID 52
>sp|O60058|AFG2_SCHPO ATPase family gene 2 protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=afg2 PE=3 SV=1
Length = 809
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 40/135 (29%)
Query: 22 NKIIFDFF--------LSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDI 73
N +F FF L Y PG GKT VMR +A E +V +D + +G
Sbjct: 301 NPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAA----EANAQVFTIDGPSVVG----- 351
Query: 74 PHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG----------TEAEAHACR 123
+ E + + + E H P +I +DEI +EAE+ R
Sbjct: 352 ----------KYLGETESRLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEAES---R 398
Query: 124 SIAERGVMLIGTAHG 138
++A +L G A+
Sbjct: 399 AVATLLTLLDGMANA 413
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 38/108 (35%), Gaps = 29/108 (26%)
Query: 30 LSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP 89
L Y PG GKT + R IA L F K V IG + G AR
Sbjct: 175 LLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR------- 227
Query: 90 SLQHKVMIEAVENHMPEVIIVDEI----------GTEAEAHACRSIAE 127
+H P VI +DEI GT A+ R++ E
Sbjct: 228 ------------DHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLME 263
>sp|P93655|LONM1_ARATH Lon protease homolog 1, mitochondrial OS=Arabidopsis thaliana
GN=LON1 PE=1 SV=2
Length = 940
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 35 PGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 94
PGVGKT++ R IAR L+ +F + V GG D+ + I RR V +
Sbjct: 466 PGVGKTSIGRSIARALNRKFFRFSV--------GGLADV--AEIKGHRRTYVGAMPGKMV 515
Query: 95 VMIEAVENHMPEVIIVDEIGTEAEAHA 121
+++V P ++++DEI HA
Sbjct: 516 QCLKSVGTANP-LVLIDEIDKLGRGHA 541
>sp|P40340|TBP7_YEAST Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YTA7 PE=1 SV=2
Length = 1379
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 35 PGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHK 94
PG GKT + R +A S + +K + DI +G A R Q +
Sbjct: 456 PGTGKTLMARALAASCSSDERKITFFMRKG------ADILSKWVGEAER--------QLR 501
Query: 95 VMIEAVENHMPEVIIVDEIGTEAEAHACR 123
++ E + H P +I DEI A + +
Sbjct: 502 LLFEEAKKHQPSIIFFDEIDGLAPVRSSK 530
>sp|Q604U6|SMC_METCA Chromosome partition protein Smc OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=smc PE=3
SV=2
Length = 1169
Score = 30.8 bits (68), Expect = 8.7, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 165 EEARARRCQKSILERKAPPTFYFLIEMRERHYWVTHKTEKSVDMLLRGKTPLVEIRKRDD 224
EE RA R + ++LE A T L + ++H + V L +TPL + R R D
Sbjct: 801 EEVRALRSRAAMLESNAALTAAHLQRLEQQHGQTADRLAAIVQRLAESQTPLEDERSRLD 860
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,668,439
Number of Sequences: 539616
Number of extensions: 3535781
Number of successful extensions: 15631
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 15608
Number of HSP's gapped (non-prelim): 42
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)