Query 026207
Match_columns 241
No_of_seqs 315 out of 2339
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1066 Sms Predicted ATP-depe 100.0 7.9E-31 1.7E-35 230.4 7.9 191 23-227 90-320 (456)
2 COG3854 SpoIIIAA ncharacterize 99.9 2.1E-23 4.6E-28 171.3 7.5 150 4-154 107-268 (308)
3 cd01121 Sms Sms (bacterial rad 99.9 2.1E-22 4.4E-27 180.2 8.5 187 28-227 84-310 (372)
4 COG1126 GlnQ ABC-type polar am 99.9 2.2E-21 4.7E-26 158.3 9.6 140 1-162 2-208 (240)
5 COG4555 NatA ABC-type Na+ tran 99.8 1.3E-21 2.8E-26 158.0 5.1 147 28-188 30-232 (245)
6 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 5.6E-20 1.2E-24 155.0 12.5 148 1-162 4-211 (254)
7 COG1120 FepC ABC-type cobalami 99.8 3.7E-20 8E-25 156.7 10.1 124 28-162 30-211 (258)
8 COG4152 ABC-type uncharacteriz 99.8 1.9E-20 4.2E-25 155.1 6.6 143 28-184 30-225 (300)
9 TIGR00416 sms DNA repair prote 99.8 4.2E-20 9.2E-25 169.4 6.2 186 28-226 96-321 (454)
10 COG1125 OpuBA ABC-type proline 99.8 3.5E-19 7.7E-24 148.5 8.5 146 1-162 1-208 (309)
11 COG2804 PulE Type II secretory 99.8 7.6E-19 1.6E-23 159.2 11.3 115 23-147 255-370 (500)
12 COG1131 CcmA ABC-type multidru 99.8 5E-19 1.1E-23 154.2 9.5 143 28-181 33-229 (293)
13 COG1116 TauB ABC-type nitrate/ 99.8 2.1E-18 4.6E-23 144.0 12.7 124 28-162 31-203 (248)
14 PRK13537 nodulation ABC transp 99.8 1.6E-18 3.4E-23 152.0 10.0 149 1-162 7-210 (306)
15 PRK13536 nodulation factor exp 99.8 2.3E-18 5E-23 152.9 10.4 139 28-177 69-260 (340)
16 PRK11823 DNA repair protein Ra 99.8 7.9E-19 1.7E-23 160.9 6.3 185 28-225 82-306 (446)
17 COG1127 Ttg2A ABC-type transpo 99.7 1.8E-17 3.9E-22 137.4 9.5 152 11-176 10-233 (263)
18 cd03216 ABC_Carb_Monos_I This 99.7 3.1E-17 6.8E-22 131.1 10.7 118 28-162 28-154 (163)
19 COG1122 CbiO ABC-type cobalt t 99.7 1.1E-17 2.4E-22 140.9 7.5 126 28-167 32-217 (235)
20 TIGR02858 spore_III_AA stage I 99.7 2E-17 4.4E-22 142.1 8.9 157 4-162 80-254 (270)
21 TIGR01288 nodI ATP-binding ABC 99.7 3E-17 6.5E-22 143.7 10.2 149 1-162 4-207 (303)
22 COG2805 PilT Tfp pilus assembl 99.7 3.5E-17 7.5E-22 139.5 9.8 118 23-145 122-239 (353)
23 cd03215 ABC_Carb_Monos_II This 99.7 4.5E-17 9.8E-22 132.4 10.2 142 1-162 4-176 (182)
24 TIGR00960 3a0501s02 Type II (G 99.7 4.5E-17 9.7E-22 135.7 9.5 151 1-162 1-210 (216)
25 COG1136 SalX ABC-type antimicr 99.7 8.1E-17 1.8E-21 134.0 10.7 148 1-162 1-214 (226)
26 COG3638 ABC-type phosphate/pho 99.7 2.8E-17 6.2E-22 135.8 7.4 139 1-143 3-212 (258)
27 cd01131 PilT Pilus retraction 99.7 2.2E-16 4.8E-21 130.1 12.7 115 26-145 1-115 (198)
28 cd03246 ABCC_Protease_Secretio 99.7 6.8E-17 1.5E-21 130.3 8.8 110 28-140 30-157 (173)
29 TIGR03522 GldA_ABC_ATP gliding 99.7 1.4E-16 3.1E-21 139.4 11.4 123 28-162 30-204 (301)
30 COG4586 ABC-type uncharacteriz 99.7 3.3E-17 7.1E-22 138.0 7.0 155 23-192 46-259 (325)
31 cd03222 ABC_RNaseL_inhibitor T 99.7 8.5E-17 1.8E-21 130.2 8.8 111 27-162 26-144 (177)
32 cd01129 PulE-GspE PulE/GspE Th 99.7 2.8E-16 6E-21 135.0 12.3 114 24-147 78-192 (264)
33 COG4559 ABC-type hemin transpo 99.7 1.7E-16 3.7E-21 129.3 10.0 148 1-162 1-213 (259)
34 cd03266 ABC_NatA_sodium_export 99.7 2E-16 4.4E-21 131.9 10.8 148 1-162 1-208 (218)
35 TIGR01188 drrA daunorubicin re 99.7 6.1E-17 1.3E-21 141.7 7.9 128 24-162 16-196 (302)
36 TIGR02673 FtsE cell division A 99.7 1.6E-16 3.6E-21 132.0 10.0 150 1-162 1-209 (214)
37 cd03230 ABC_DR_subfamily_A Thi 99.7 3.9E-16 8.4E-21 125.9 11.5 121 28-162 28-167 (173)
38 COG3839 MalK ABC-type sugar tr 99.7 1.1E-16 2.4E-21 140.4 8.9 121 28-162 31-206 (338)
39 PRK10436 hypothetical protein; 99.7 3.5E-16 7.5E-21 143.5 12.4 114 24-147 216-330 (462)
40 PRK09536 btuD corrinoid ABC tr 99.7 1.2E-16 2.6E-21 144.6 9.2 149 1-162 3-211 (402)
41 PRK11153 metN DL-methionine tr 99.7 1.2E-16 2.6E-21 142.2 9.0 151 1-162 1-213 (343)
42 cd03229 ABC_Class3 This class 99.7 5.1E-16 1.1E-20 125.7 11.5 121 28-162 28-173 (178)
43 TIGR01420 pilT_fam pilus retra 99.7 5.8E-16 1.3E-20 137.8 12.6 118 24-146 120-237 (343)
44 PRK11432 fbpC ferric transport 99.7 1.5E-16 3.2E-21 141.9 8.6 123 28-162 34-209 (351)
45 PRK11248 tauB taurine transpor 99.7 4E-16 8.7E-21 133.4 10.9 149 1-162 1-201 (255)
46 COG3842 PotA ABC-type spermidi 99.7 3.8E-16 8.2E-21 137.8 10.7 137 12-162 8-209 (352)
47 PRK13638 cbiO cobalt transport 99.7 1.6E-16 3.5E-21 137.0 8.2 149 1-162 1-208 (271)
48 COG0411 LivG ABC-type branched 99.7 1.4E-16 3E-21 132.5 7.4 151 12-178 7-239 (250)
49 COG3840 ThiQ ABC-type thiamine 99.7 6.4E-16 1.4E-20 123.3 10.9 157 1-179 1-220 (231)
50 cd03214 ABC_Iron-Siderophores_ 99.7 3.4E-16 7.3E-21 127.0 9.5 121 28-162 27-170 (180)
51 TIGR03265 PhnT2 putative 2-ami 99.7 1.8E-16 3.9E-21 141.5 8.4 148 1-162 4-207 (353)
52 TIGR02525 plasmid_TraJ plasmid 99.7 7.7E-16 1.7E-20 137.7 12.5 120 25-147 148-268 (372)
53 PRK11650 ugpC glycerol-3-phosp 99.7 2.6E-16 5.7E-21 140.6 9.3 149 1-162 3-207 (356)
54 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 8.3E-16 1.8E-20 120.5 11.0 108 28-162 28-139 (144)
55 cd03223 ABCD_peroxisomal_ALDP 99.7 1.1E-15 2.4E-20 122.6 11.7 110 28-140 29-149 (166)
56 TIGR02533 type_II_gspE general 99.7 6.2E-16 1.4E-20 143.0 11.8 114 24-147 240-354 (486)
57 TIGR02314 ABC_MetN D-methionin 99.7 7.4E-16 1.6E-20 136.9 11.8 151 1-162 1-213 (343)
58 COG1118 CysA ABC-type sulfate/ 99.7 2.9E-16 6.3E-21 134.2 8.7 147 1-162 2-210 (345)
59 COG1124 DppF ABC-type dipeptid 99.7 5.4E-16 1.2E-20 128.9 9.9 121 28-162 35-214 (252)
60 cd03226 ABC_cobalt_CbiO_domain 99.7 5.6E-16 1.2E-20 128.1 10.0 124 28-162 28-198 (205)
61 COG2884 FtsE Predicted ATPase 99.7 4.5E-16 9.7E-21 124.9 8.8 144 1-147 1-205 (223)
62 PRK11000 maltose/maltodextrin 99.7 3E-16 6.4E-21 140.9 8.8 148 2-162 4-206 (369)
63 COG1135 AbcC ABC-type metal io 99.7 3.1E-16 6.7E-21 134.3 8.1 148 1-162 1-214 (339)
64 PRK13643 cbiO cobalt transport 99.7 2.2E-16 4.8E-21 137.3 7.4 151 1-162 1-216 (288)
65 TIGR02524 dot_icm_DotB Dot/Icm 99.6 9.5E-16 2.1E-20 136.8 11.6 121 25-147 133-255 (358)
66 TIGR03258 PhnT 2-aminoethylpho 99.6 5.7E-16 1.2E-20 138.6 9.9 123 28-162 33-211 (362)
67 cd03258 ABC_MetN_methionine_tr 99.6 1E-15 2.3E-20 128.9 11.0 148 1-162 1-213 (233)
68 cd03259 ABC_Carb_Solutes_like 99.6 1E-15 2.3E-20 127.2 10.7 124 28-162 28-203 (213)
69 PRK10908 cell division protein 99.6 1.2E-15 2.6E-20 127.7 11.1 150 1-162 1-209 (222)
70 PRK13651 cobalt transporter AT 99.6 3.7E-16 8.1E-21 136.9 8.2 65 87-162 166-237 (305)
71 cd03232 ABC_PDR_domain2 The pl 99.6 1.8E-15 3.9E-20 124.0 11.7 110 28-140 35-169 (192)
72 COG0410 LivF ABC-type branched 99.6 6.6E-16 1.4E-20 127.5 9.0 132 1-140 3-198 (237)
73 PRK11264 putative amino-acid A 99.6 1.1E-15 2.3E-20 130.1 10.6 149 1-162 3-216 (250)
74 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 1.4E-15 3E-20 126.8 10.8 123 28-162 32-212 (218)
75 PRK11300 livG leucine/isoleuci 99.6 7.3E-16 1.6E-20 131.5 9.3 65 87-162 154-226 (255)
76 cd03265 ABC_DrrA DrrA is the A 99.6 2E-15 4.2E-20 126.2 11.7 125 27-162 27-204 (220)
77 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 7.1E-16 1.5E-20 130.3 9.0 138 1-140 1-194 (236)
78 PRK11144 modC molybdate transp 99.6 5.4E-16 1.2E-20 138.5 8.6 124 27-162 25-201 (352)
79 PRK09544 znuC high-affinity zi 99.6 1.2E-15 2.6E-20 130.2 10.4 149 1-162 4-193 (251)
80 cd03293 ABC_NrtD_SsuB_transpor 99.6 1.7E-15 3.8E-20 126.5 11.2 128 24-162 27-204 (220)
81 cd03213 ABCG_EPDR ABCG transpo 99.6 1.7E-15 3.7E-20 124.4 10.8 122 28-162 37-184 (194)
82 cd03296 ABC_CysA_sulfate_impor 99.6 1.3E-15 2.9E-20 128.8 10.4 148 2-162 3-209 (239)
83 TIGR02538 type_IV_pilB type IV 99.6 1.8E-15 3.9E-20 142.6 12.2 114 24-147 314-428 (564)
84 COG4604 CeuD ABC-type enteroch 99.6 3.5E-16 7.6E-21 126.3 6.3 140 1-145 1-202 (252)
85 PRK13652 cbiO cobalt transport 99.6 5.2E-16 1.1E-20 134.3 7.9 150 1-162 3-210 (277)
86 PRK10895 lipopolysaccharide AB 99.6 1.5E-15 3.3E-20 128.5 10.3 149 1-162 3-209 (241)
87 TIGR02315 ABC_phnC phosphonate 99.6 1.5E-15 3.2E-20 128.7 10.1 150 1-162 1-218 (243)
88 PF00437 T2SE: Type II/IV secr 99.6 2E-15 4.3E-20 130.0 11.1 112 26-146 127-239 (270)
89 COG1137 YhbG ABC-type (unclass 99.6 8.3E-17 1.8E-21 130.1 2.3 153 11-177 6-227 (243)
90 cd03261 ABC_Org_Solvent_Resist 99.6 1.4E-15 3E-20 128.4 9.8 124 28-162 28-209 (235)
91 PRK13538 cytochrome c biogenes 99.6 4E-15 8.7E-20 123.0 12.4 138 1-140 1-190 (204)
92 cd03225 ABC_cobalt_CbiO_domain 99.6 1.5E-15 3.2E-20 126.0 9.8 124 28-162 29-206 (211)
93 TIGR01257 rim_protein retinal- 99.6 4.7E-16 1E-20 161.6 8.2 144 28-182 1967-2163(2272)
94 PRK15112 antimicrobial peptide 99.6 9.3E-16 2E-20 132.0 8.6 124 28-162 41-222 (267)
95 PRK11247 ssuB aliphatic sulfon 99.6 3.2E-15 7E-20 128.0 11.9 124 28-162 40-206 (257)
96 cd03269 ABC_putative_ATPase Th 99.6 2.2E-15 4.7E-20 125.0 10.5 124 28-162 28-200 (210)
97 PRK13647 cbiO cobalt transport 99.6 1E-15 2.2E-20 132.2 8.9 150 1-162 4-210 (274)
98 PRK13548 hmuV hemin importer A 99.6 2.1E-15 4.6E-20 129.1 10.7 149 1-162 2-213 (258)
99 PRK11614 livF leucine/isoleuci 99.6 1.4E-15 3.1E-20 128.4 9.5 148 1-162 5-209 (237)
100 PRK10070 glycine betaine trans 99.6 9.5E-16 2.1E-20 138.6 8.8 124 28-162 56-237 (400)
101 cd03292 ABC_FtsE_transporter F 99.6 1.7E-15 3.7E-20 125.9 9.7 124 28-162 29-208 (214)
102 cd03257 ABC_NikE_OppD_transpor 99.6 2.8E-15 6.1E-20 125.6 11.1 148 1-162 1-218 (228)
103 PRK15439 autoinducer 2 ABC tra 99.6 1.5E-15 3.2E-20 141.9 10.4 149 1-162 11-212 (510)
104 cd01130 VirB11-like_ATPase Typ 99.6 4.6E-15 1E-19 121.1 11.9 117 25-147 24-143 (186)
105 PRK13644 cbiO cobalt transport 99.6 8.7E-16 1.9E-20 132.7 8.1 149 1-162 1-207 (274)
106 cd03218 ABC_YhbG The ABC trans 99.6 4.1E-15 8.9E-20 125.1 12.0 124 28-162 28-205 (232)
107 PRK11831 putative ABC transpor 99.6 1.5E-15 3.3E-20 130.8 9.5 148 1-162 7-216 (269)
108 PRK13637 cbiO cobalt transport 99.6 7.4E-16 1.6E-20 134.0 7.6 128 24-162 30-217 (287)
109 PRK09452 potA putrescine/sperm 99.6 1.3E-15 2.9E-20 136.8 9.4 123 28-162 42-217 (375)
110 cd03247 ABCC_cytochrome_bd The 99.6 8.9E-16 1.9E-20 124.3 7.5 109 28-140 30-158 (178)
111 cd03262 ABC_HisP_GlnQ_permease 99.6 3.4E-15 7.5E-20 123.9 11.2 124 28-162 28-207 (213)
112 PRK09493 glnQ glutamine ABC tr 99.6 2.6E-15 5.6E-20 127.1 10.6 149 1-162 1-208 (240)
113 cd03301 ABC_MalK_N The N-termi 99.6 3.6E-15 7.8E-20 123.9 11.2 124 28-162 28-203 (213)
114 PRK13641 cbiO cobalt transport 99.6 9.8E-16 2.1E-20 133.2 8.0 128 24-162 30-217 (287)
115 TIGR02324 CP_lyasePhnL phospho 99.6 3.4E-15 7.4E-20 125.0 10.9 54 87-140 150-210 (224)
116 PRK10619 histidine/lysine/argi 99.6 2.9E-15 6.3E-20 128.1 10.7 65 87-162 153-224 (257)
117 cd03268 ABC_BcrA_bacitracin_re 99.6 4.8E-15 1E-19 122.8 11.7 124 28-162 28-198 (208)
118 PRK13635 cbiO cobalt transport 99.6 7.1E-16 1.5E-20 133.6 6.9 117 24-140 30-202 (279)
119 PRK13540 cytochrome c biogenes 99.6 4.5E-15 9.8E-20 122.3 11.4 135 1-140 1-188 (200)
120 PRK13636 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 132.2 8.5 150 1-162 5-214 (283)
121 PRK11607 potG putrescine trans 99.6 1.7E-15 3.7E-20 136.3 9.5 123 28-162 47-222 (377)
122 cd03235 ABC_Metallic_Cations A 99.6 3.4E-15 7.3E-20 124.1 10.6 124 28-162 27-204 (213)
123 PRK10771 thiQ thiamine transpo 99.6 2E-15 4.4E-20 127.1 9.4 149 1-162 1-202 (232)
124 PRK13650 cbiO cobalt transport 99.6 9.7E-16 2.1E-20 132.7 7.5 123 28-162 35-212 (279)
125 PRK14250 phosphate ABC transpo 99.6 2.3E-15 5.1E-20 127.6 9.7 124 28-162 31-204 (241)
126 PRK11124 artP arginine transpo 99.6 2.7E-15 5.8E-20 127.1 9.8 149 1-162 2-213 (242)
127 PRK13646 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 132.4 8.0 128 24-162 30-218 (286)
128 TIGR02211 LolD_lipo_ex lipopro 99.6 4.4E-15 9.6E-20 124.0 10.9 113 28-140 33-203 (221)
129 cd03263 ABC_subfamily_A The AB 99.6 2.9E-15 6.4E-20 125.0 9.8 123 28-162 30-204 (220)
130 PRK13634 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 132.6 7.8 124 28-162 35-218 (290)
131 PRK13543 cytochrome c biogenes 99.6 8E-15 1.7E-19 122.1 12.2 124 28-162 39-209 (214)
132 PRK10938 putative molybdenum t 99.6 4.3E-15 9.4E-20 138.1 11.6 146 1-162 3-207 (490)
133 cd00267 ABC_ATPase ABC (ATP-bi 99.6 4.6E-15 1E-19 117.6 10.1 119 27-162 26-152 (157)
134 cd03224 ABC_TM1139_LivF_branch 99.6 4.7E-15 1E-19 123.9 10.4 124 28-162 28-204 (222)
135 PRK15064 ABC transporter ATP-b 99.6 4.1E-15 8.9E-20 139.5 11.2 138 1-140 1-213 (530)
136 PRK11629 lolD lipoprotein tran 99.6 4.6E-15 1E-19 125.0 10.3 113 28-140 37-207 (233)
137 PRK10584 putative ABC transpor 99.6 5.5E-15 1.2E-19 124.1 10.6 113 28-140 38-208 (228)
138 PRK11231 fecE iron-dicitrate t 99.6 4E-15 8.6E-20 127.1 9.9 148 1-162 2-210 (255)
139 TIGR03740 galliderm_ABC gallid 99.6 7E-15 1.5E-19 123.1 11.0 124 28-162 28-196 (223)
140 cd03217 ABC_FeS_Assembly ABC-t 99.6 7.3E-15 1.6E-19 121.2 10.8 121 28-162 28-177 (200)
141 PRK09700 D-allose transporter 99.6 3.4E-15 7.3E-20 139.5 9.9 149 1-162 5-217 (510)
142 PRK10762 D-ribose transporter 99.6 3.8E-15 8.3E-20 138.9 10.1 149 1-162 4-213 (501)
143 cd03219 ABC_Mj1267_LivG_branch 99.6 6.1E-15 1.3E-19 124.4 10.4 65 87-162 144-215 (236)
144 cd03264 ABC_drug_resistance_li 99.6 6.7E-15 1.5E-19 122.1 10.4 127 23-162 22-201 (211)
145 TIGR01277 thiQ thiamine ABC tr 99.6 6.2E-15 1.4E-19 122.6 10.1 125 27-162 25-201 (213)
146 TIGR02769 nickel_nikE nickel i 99.6 3.8E-15 8.2E-20 128.0 9.0 124 28-162 39-223 (265)
147 PRK10851 sulfate/thiosulfate t 99.6 7.5E-15 1.6E-19 131.1 11.2 124 28-162 30-209 (353)
148 cd03237 ABC_RNaseL_inhibitor_d 99.6 4.4E-15 9.4E-20 126.4 9.2 125 27-162 26-188 (246)
149 TIGR03411 urea_trans_UrtD urea 99.6 5.9E-15 1.3E-19 125.0 10.0 148 1-162 2-214 (242)
150 PRK13900 type IV secretion sys 99.6 1.2E-14 2.6E-19 128.6 12.2 117 26-146 160-277 (332)
151 PRK10418 nikD nickel transport 99.6 4.6E-15 9.9E-20 126.7 9.3 148 1-162 4-213 (254)
152 PRK11308 dppF dipeptide transp 99.6 3.5E-15 7.7E-20 132.0 8.9 66 86-162 154-227 (327)
153 cd03231 ABC_CcmA_heme_exporter 99.6 1.3E-14 2.8E-19 119.7 11.7 113 28-140 28-186 (201)
154 PRK15056 manganese/iron transp 99.6 1.1E-14 2.4E-19 125.6 11.8 137 1-140 6-203 (272)
155 cd03256 ABC_PhnC_transporter A 99.6 9.4E-15 2E-19 123.5 11.1 65 87-162 145-217 (241)
156 PRK10247 putative ABC transpor 99.6 6.9E-15 1.5E-19 123.4 10.1 148 1-162 7-209 (225)
157 PRK13639 cbiO cobalt transport 99.6 6.5E-15 1.4E-19 127.3 10.0 149 1-162 1-209 (275)
158 PRK11701 phnK phosphonate C-P 99.6 3.7E-15 8E-20 127.5 8.3 65 87-162 152-224 (258)
159 PRK10253 iron-enterobactin tra 99.6 7.4E-15 1.6E-19 126.2 10.2 124 28-162 35-216 (265)
160 PRK13648 cbiO cobalt transport 99.6 3E-15 6.5E-20 128.9 7.5 113 28-140 37-204 (269)
161 PRK13649 cbiO cobalt transport 99.6 5.7E-15 1.2E-19 127.9 9.3 124 28-162 35-217 (280)
162 TIGR03410 urea_trans_UrtE urea 99.6 1.7E-14 3.8E-19 121.2 11.9 124 28-162 28-204 (230)
163 PRK10575 iron-hydroxamate tran 99.6 9.2E-15 2E-19 125.6 10.3 124 28-162 39-220 (265)
164 PRK13549 xylose transporter AT 99.6 6.2E-15 1.3E-19 137.6 10.0 149 1-162 5-215 (506)
165 PRK13640 cbiO cobalt transport 99.6 2.7E-15 5.8E-20 130.1 7.0 137 1-140 5-205 (282)
166 PRK13633 cobalt transporter AT 99.6 4.9E-15 1.1E-19 128.4 8.6 140 1-140 4-206 (280)
167 PRK11819 putative ABC transpor 99.6 8.8E-15 1.9E-19 138.1 11.0 137 1-140 6-221 (556)
168 cd03294 ABC_Pro_Gly_Bertaine T 99.6 3.4E-15 7.4E-20 128.6 7.5 124 28-162 52-233 (269)
169 PRK13631 cbiO cobalt transport 99.6 2.9E-15 6.2E-20 132.1 7.1 65 87-162 177-248 (320)
170 PRK13539 cytochrome c biogenes 99.6 1.9E-14 4.1E-19 119.3 11.6 135 1-140 2-188 (207)
171 PRK13632 cbiO cobalt transport 99.6 6.9E-15 1.5E-19 126.8 9.3 113 28-140 37-204 (271)
172 PRK10419 nikE nickel transport 99.6 6.8E-15 1.5E-19 126.7 9.2 65 87-162 152-224 (268)
173 TIGR02782 TrbB_P P-type conjug 99.6 1.5E-14 3.2E-19 126.4 11.2 114 26-147 132-247 (299)
174 PRK13547 hmuV hemin importer A 99.6 4.3E-15 9.3E-20 128.2 7.8 149 1-162 1-227 (272)
175 COG1117 PstB ABC-type phosphat 99.6 2.1E-14 4.6E-19 117.3 11.3 54 87-140 150-209 (253)
176 PRK13645 cbiO cobalt transport 99.6 6.9E-15 1.5E-19 128.0 9.0 65 87-162 151-223 (289)
177 TIGR00972 3a0107s01c2 phosphat 99.6 1.3E-14 2.9E-19 123.3 10.4 148 1-162 1-215 (247)
178 cd03297 ABC_ModC_molybdenum_tr 99.6 8E-15 1.7E-19 122.0 8.8 125 27-162 24-204 (214)
179 PRK09984 phosphonate/organopho 99.6 1.3E-14 2.8E-19 124.5 10.2 65 87-162 153-225 (262)
180 PRK13851 type IV secretion sys 99.6 1.7E-14 3.7E-19 127.9 11.2 117 26-147 162-279 (344)
181 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 5.7E-15 1.2E-19 123.9 7.8 121 28-162 50-214 (224)
182 cd03298 ABC_ThiQ_thiamine_tran 99.6 1.8E-14 3.9E-19 119.5 10.7 124 28-162 26-201 (211)
183 PRK15079 oligopeptide ABC tran 99.6 1.3E-14 2.8E-19 128.6 10.3 124 28-162 49-234 (331)
184 TIGR02323 CP_lyasePhnK phospho 99.6 1.2E-14 2.6E-19 123.9 9.8 65 87-162 149-221 (253)
185 PRK13545 tagH teichoic acids e 99.6 4.9E-15 1.1E-19 136.8 7.7 122 28-162 52-215 (549)
186 PRK11288 araG L-arabinose tran 99.6 1E-14 2.2E-19 136.0 10.0 149 1-162 4-212 (501)
187 PRK14242 phosphate transporter 99.6 8.8E-15 1.9E-19 124.8 8.8 64 87-162 150-220 (253)
188 PRK11022 dppD dipeptide transp 99.6 8.1E-15 1.8E-19 129.6 8.8 65 87-162 154-226 (326)
189 TIGR01184 ntrCD nitrate transp 99.6 8.9E-15 1.9E-19 123.2 8.7 128 26-166 11-192 (230)
190 cd03228 ABCC_MRP_Like The MRP 99.6 1.5E-14 3.3E-19 116.4 9.5 109 28-140 30-156 (171)
191 PRK13409 putative ATPase RIL; 99.6 1.3E-14 2.8E-19 137.5 10.5 124 28-162 367-526 (590)
192 TIGR01186 proV glycine betaine 99.6 5.3E-15 1.2E-19 132.3 7.4 124 27-162 20-202 (363)
193 PRK14247 phosphate ABC transpo 99.6 1.2E-14 2.6E-19 123.7 9.1 64 87-162 147-217 (250)
194 TIGR03608 L_ocin_972_ABC putat 99.6 1.8E-14 4E-19 118.9 10.0 113 28-140 26-195 (206)
195 PRK13541 cytochrome c biogenes 99.6 4.8E-14 1E-18 115.7 12.3 135 1-140 1-184 (195)
196 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 1.7E-14 3.7E-19 136.0 10.8 137 1-140 4-219 (552)
197 TIGR01257 rim_protein retinal- 99.6 7.3E-15 1.6E-19 153.0 8.9 144 28-183 958-1154(2272)
198 COG1129 MglA ABC-type sugar tr 99.6 1.2E-14 2.7E-19 132.8 9.4 137 12-162 11-217 (500)
199 TIGR03873 F420-0_ABC_ATP propo 99.6 3.6E-14 7.9E-19 121.3 11.8 124 28-162 29-209 (256)
200 cd03252 ABCC_Hemolysin The ABC 99.6 8.7E-15 1.9E-19 123.6 7.7 112 28-140 30-198 (237)
201 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 1E-14 2.2E-19 123.3 8.0 122 28-162 31-209 (238)
202 cd03254 ABCC_Glucan_exporter_l 99.6 1.6E-14 3.5E-19 121.2 9.3 116 24-140 26-199 (229)
203 PRK13833 conjugal transfer pro 99.6 3.6E-14 7.9E-19 124.6 11.8 112 27-147 145-258 (323)
204 cd03238 ABC_UvrA The excision 99.6 1.7E-14 3.7E-19 116.7 8.9 114 27-162 22-160 (176)
205 PRK10982 galactose/methyl gala 99.6 1.3E-14 2.9E-19 134.9 9.5 66 86-162 391-463 (491)
206 PRK14273 phosphate ABC transpo 99.5 1.6E-14 3.5E-19 123.2 9.0 64 87-162 151-221 (254)
207 cd03260 ABC_PstB_phosphate_tra 99.5 2.3E-14 5.1E-19 120.2 9.7 66 85-162 140-212 (227)
208 PRK09473 oppD oligopeptide tra 99.5 1.6E-14 3.5E-19 127.9 9.0 65 87-162 162-234 (330)
209 PRK14262 phosphate ABC transpo 99.5 1.4E-14 3.1E-19 123.2 8.3 64 87-162 147-217 (250)
210 PRK13764 ATPase; Provisional 99.5 6E-14 1.3E-18 131.8 12.9 126 26-162 257-386 (602)
211 COG4148 ModC ABC-type molybdat 99.5 1.2E-14 2.6E-19 123.0 7.3 145 24-179 21-219 (352)
212 PRK10636 putative ABC transpor 99.5 2.2E-14 4.8E-19 137.3 10.2 138 1-140 1-207 (638)
213 TIGR02633 xylG D-xylose ABC tr 99.5 2.4E-14 5.3E-19 133.4 10.1 149 1-162 1-213 (500)
214 cd03233 ABC_PDR_domain1 The pl 99.5 3.6E-14 7.8E-19 117.2 9.9 121 28-162 35-192 (202)
215 TIGR02142 modC_ABC molybdenum 99.5 1.5E-14 3.2E-19 129.3 8.2 125 27-162 24-204 (354)
216 cd03295 ABC_OpuCA_Osmoprotecti 99.5 6.3E-14 1.4E-18 118.8 11.6 124 28-162 29-208 (242)
217 PRK13642 cbiO cobalt transport 99.5 1.5E-14 3.3E-19 125.1 8.0 113 28-140 35-202 (277)
218 cd03267 ABC_NatA_like Similar 99.5 3.4E-14 7.3E-19 120.1 9.9 124 28-162 49-226 (236)
219 PRK10261 glutathione transport 99.5 3.4E-14 7.4E-19 135.7 11.1 124 28-162 352-536 (623)
220 TIGR01189 ccmA heme ABC export 99.5 8.5E-14 1.9E-18 114.5 12.0 113 28-140 28-188 (198)
221 cd03299 ABC_ModC_like Archeal 99.5 3.9E-14 8.4E-19 119.7 10.2 124 28-162 27-202 (235)
222 PRK14248 phosphate ABC transpo 99.5 3.7E-14 8E-19 122.0 10.2 64 87-162 165-235 (268)
223 PRK14274 phosphate ABC transpo 99.5 2.3E-14 5E-19 122.7 8.9 64 87-162 156-226 (259)
224 COG4525 TauB ABC-type taurine 99.5 4.1E-14 8.8E-19 114.3 9.7 114 28-145 33-198 (259)
225 PRK14249 phosphate ABC transpo 99.5 2.9E-14 6.3E-19 121.5 9.4 64 87-162 148-218 (251)
226 PRK09580 sufC cysteine desulfu 99.5 4E-14 8.7E-19 120.2 10.2 55 86-140 145-206 (248)
227 PRK10636 putative ABC transpor 99.5 3E-14 6.6E-19 136.3 10.5 124 28-162 340-499 (638)
228 PRK15093 antimicrobial peptide 99.5 5.8E-14 1.3E-18 124.4 11.5 65 87-162 159-231 (330)
229 PRK15134 microcin C ABC transp 99.5 4.1E-14 8.8E-19 132.8 11.1 67 85-162 155-229 (529)
230 PRK15064 ABC transporter ATP-b 99.5 2.5E-14 5.5E-19 134.2 9.6 124 28-162 347-507 (530)
231 PRK14269 phosphate ABC transpo 99.5 4.9E-14 1.1E-18 119.8 10.5 64 87-162 143-213 (246)
232 TIGR02770 nickel_nikD nickel i 99.5 1.7E-14 3.6E-19 121.5 7.5 126 26-162 12-198 (230)
233 PRK14265 phosphate ABC transpo 99.5 4.1E-14 8.9E-19 122.2 10.1 64 87-162 162-232 (274)
234 COG1119 ModF ABC-type molybden 99.5 7.1E-14 1.5E-18 116.5 11.0 136 1-139 31-233 (257)
235 PRK13546 teichoic acids export 99.5 1.2E-14 2.6E-19 124.9 6.7 122 28-162 52-215 (264)
236 PRK14268 phosphate ABC transpo 99.5 2E-14 4.4E-19 123.0 8.0 64 87-162 155-225 (258)
237 PRK14272 phosphate ABC transpo 99.5 3.3E-14 7.1E-19 121.1 9.3 64 87-162 149-219 (252)
238 PRK11147 ABC transporter ATPas 99.5 3.7E-14 8.1E-19 135.7 10.6 56 85-140 155-214 (635)
239 PRK10744 pstB phosphate transp 99.5 4.9E-14 1.1E-18 120.8 10.3 64 87-162 157-227 (260)
240 cd03300 ABC_PotA_N PotA is an 99.5 1E-13 2.2E-18 116.9 11.9 123 28-162 28-203 (232)
241 cd03248 ABCC_TAP TAP, the Tran 99.5 3.9E-14 8.5E-19 118.8 9.3 112 28-140 42-210 (226)
242 TIGR03771 anch_rpt_ABC anchore 99.5 2.9E-14 6.3E-19 119.5 8.5 126 26-162 6-185 (223)
243 PRK09700 D-allose transporter 99.5 2.9E-14 6.3E-19 133.2 9.4 65 87-162 410-481 (510)
244 PRK15439 autoinducer 2 ABC tra 99.5 3.4E-14 7.4E-19 132.8 9.8 124 28-162 291-475 (510)
245 PRK14267 phosphate ABC transpo 99.5 6.8E-14 1.5E-18 119.3 10.8 64 87-162 150-220 (253)
246 TIGR03415 ABC_choXWV_ATP choli 99.5 1.6E-14 3.5E-19 129.9 7.1 122 28-162 52-237 (382)
247 COG0488 Uup ATPase components 99.5 2.8E-14 6.2E-19 132.8 9.0 113 28-141 31-212 (530)
248 TIGR01166 cbiO cobalt transpor 99.5 3.2E-14 6.9E-19 116.3 8.3 113 28-140 20-188 (190)
249 PRK14241 phosphate transporter 99.5 7.5E-14 1.6E-18 119.4 10.9 64 87-162 149-219 (258)
250 PRK14235 phosphate transporter 99.5 5.8E-14 1.3E-18 120.8 10.2 64 87-162 164-234 (267)
251 PRK14259 phosphate ABC transpo 99.5 1E-13 2.2E-18 119.5 11.6 64 87-162 155-225 (269)
252 cd03234 ABCG_White The White s 99.5 9.2E-14 2E-18 116.6 11.0 125 28-162 35-216 (226)
253 PRK14239 phosphate transporter 99.5 4E-14 8.7E-19 120.6 8.9 64 87-162 149-219 (252)
254 PRK14270 phosphate ABC transpo 99.5 6.6E-14 1.4E-18 119.3 10.3 64 87-162 148-218 (251)
255 TIGR03269 met_CoM_red_A2 methy 99.5 9.1E-14 2E-18 130.2 12.1 67 85-162 167-241 (520)
256 PRK14245 phosphate ABC transpo 99.5 2.8E-14 6.1E-19 121.5 7.9 64 87-162 147-217 (250)
257 TIGR03005 ectoine_ehuA ectoine 99.5 9.6E-14 2.1E-18 118.3 11.2 65 87-162 147-219 (252)
258 PRK10261 glutathione transport 99.5 5.9E-14 1.3E-18 134.1 10.9 65 87-162 169-241 (623)
259 cd03250 ABCC_MRP_domain1 Domai 99.5 9E-14 2E-18 114.8 10.5 113 28-140 33-189 (204)
260 COG2274 SunT ABC-type bacterio 99.5 2.9E-14 6.2E-19 136.8 8.5 140 28-179 501-697 (709)
261 COG3845 ABC-type uncharacteriz 99.5 7.4E-14 1.6E-18 126.1 10.4 120 28-162 32-212 (501)
262 TIGR02788 VirB11 P-type DNA tr 99.5 1.4E-13 3.1E-18 120.8 12.1 115 26-145 144-259 (308)
263 PRK13894 conjugal transfer ATP 99.5 1.7E-13 3.6E-18 120.6 12.4 111 26-147 148-262 (319)
264 PRK14238 phosphate transporter 99.5 3.7E-14 8E-19 122.3 8.2 64 87-162 168-238 (271)
265 cd03251 ABCC_MsbA MsbA is an e 99.5 7.4E-14 1.6E-18 117.6 9.8 112 28-140 30-198 (234)
266 PRK14240 phosphate transporter 99.5 8.3E-14 1.8E-18 118.5 10.2 64 87-162 147-217 (250)
267 PRK13549 xylose transporter AT 99.5 4.6E-14 1E-18 131.8 9.3 66 86-162 405-477 (506)
268 cd03253 ABCC_ATM1_transporter 99.5 3.9E-14 8.5E-19 119.4 8.0 112 28-140 29-197 (236)
269 PRK14253 phosphate ABC transpo 99.5 7.5E-14 1.6E-18 118.7 9.7 64 87-162 146-216 (249)
270 PRK10982 galactose/methyl gala 99.5 5.6E-14 1.2E-18 130.7 9.6 124 28-162 26-206 (491)
271 PRK14243 phosphate transporter 99.5 8.1E-14 1.8E-18 119.7 9.9 64 87-162 152-222 (264)
272 TIGR00968 3a0106s01 sulfate AB 99.5 1.9E-13 4E-18 115.6 11.9 124 28-162 28-203 (237)
273 COG4598 HisP ABC-type histidin 99.5 5.2E-14 1.1E-18 112.4 7.9 54 87-140 153-213 (256)
274 PRK14236 phosphate transporter 99.5 6E-14 1.3E-18 121.1 9.0 64 87-162 169-239 (272)
275 PRK10762 D-ribose transporter 99.5 5.2E-14 1.1E-18 131.3 9.0 66 86-162 395-467 (501)
276 COG1134 TagH ABC-type polysacc 99.5 2.3E-14 5E-19 119.4 5.8 122 28-162 55-219 (249)
277 PRK11147 ABC transporter ATPas 99.5 1E-13 2.2E-18 132.8 11.0 124 28-162 347-509 (635)
278 TIGR03269 met_CoM_red_A2 methy 99.5 5E-14 1.1E-18 131.9 8.5 65 87-162 428-500 (520)
279 TIGR02982 heterocyst_DevA ABC 99.5 1.3E-13 2.9E-18 115.2 10.1 113 28-140 33-203 (220)
280 TIGR01187 potA spermidine/putr 99.5 2.9E-14 6.3E-19 126.1 6.4 65 87-162 101-173 (325)
281 PRK15177 Vi polysaccharide exp 99.5 3.8E-14 8.2E-19 118.1 6.6 123 27-162 14-175 (213)
282 PRK14251 phosphate ABC transpo 99.5 1.2E-13 2.7E-18 117.6 9.9 64 87-162 148-218 (251)
283 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 1.1E-13 2.3E-18 130.7 10.4 124 28-162 350-512 (552)
284 PRK15134 microcin C ABC transp 99.5 1E-13 2.2E-18 130.1 10.3 66 86-162 425-498 (529)
285 TIGR03819 heli_sec_ATPase heli 99.5 2.5E-13 5.4E-18 120.5 12.1 116 26-147 178-296 (340)
286 cd03245 ABCC_bacteriocin_expor 99.5 2.1E-13 4.6E-18 113.8 10.9 122 28-162 32-210 (220)
287 PRK14264 phosphate ABC transpo 99.5 1.2E-13 2.7E-18 121.0 9.8 62 87-160 201-269 (305)
288 KOG0059 Lipid exporter ABCA1 a 99.5 5.7E-14 1.2E-18 138.7 8.4 161 9-183 564-792 (885)
289 TIGR01978 sufC FeS assembly AT 99.5 2.5E-13 5.3E-18 115.0 11.2 54 87-140 145-205 (243)
290 PRK14261 phosphate ABC transpo 99.5 7.7E-14 1.7E-18 119.0 8.1 64 87-162 150-220 (253)
291 PRK14255 phosphate ABC transpo 99.5 2E-13 4.3E-18 116.3 10.7 64 87-162 149-219 (252)
292 PRK14254 phosphate ABC transpo 99.5 1.6E-13 3.4E-18 119.3 10.1 63 86-160 180-249 (285)
293 PRK14275 phosphate ABC transpo 99.5 9E-14 2E-18 120.8 8.5 65 86-162 182-253 (286)
294 PRK14237 phosphate transporter 99.5 1.8E-13 3.8E-18 117.8 10.0 64 87-162 164-234 (267)
295 PRK03695 vitamin B12-transport 99.5 1.5E-13 3.3E-18 117.0 9.4 65 87-162 127-205 (248)
296 COG1123 ATPase components of v 99.5 1.7E-13 3.8E-18 126.2 10.4 66 86-162 154-227 (539)
297 PRK14246 phosphate ABC transpo 99.5 2.3E-13 4.9E-18 116.6 10.5 64 87-162 154-224 (257)
298 PRK11819 putative ABC transpor 99.5 1.6E-13 3.5E-18 129.5 10.4 124 28-162 352-514 (556)
299 PRK14263 phosphate ABC transpo 99.5 3E-13 6.4E-18 116.1 11.2 64 87-162 150-220 (261)
300 TIGR02633 xylG D-xylose ABC tr 99.5 9.2E-14 2E-18 129.5 8.5 66 86-162 403-475 (500)
301 COG4608 AppF ABC-type oligopep 99.5 3.8E-13 8.2E-18 113.9 11.3 119 28-162 41-182 (268)
302 COG5008 PilU Tfp pilus assembl 99.5 1.6E-13 3.5E-18 115.4 8.9 119 24-147 125-243 (375)
303 CHL00131 ycf16 sulfate ABC tra 99.5 3E-13 6.5E-18 115.2 10.9 54 87-140 152-212 (252)
304 COG0444 DppD ABC-type dipeptid 99.5 8E-13 1.7E-17 114.3 13.5 65 87-162 154-226 (316)
305 PRK14258 phosphate ABC transpo 99.5 2.3E-13 5E-18 116.7 10.1 65 87-162 151-223 (261)
306 cd03291 ABCC_CFTR1 The CFTR su 99.5 1.8E-13 3.9E-18 118.7 9.2 113 28-140 65-220 (282)
307 PRK14260 phosphate ABC transpo 99.5 2.6E-13 5.5E-18 116.3 10.1 64 87-162 151-221 (259)
308 PRK14271 phosphate ABC transpo 99.5 1E-13 2.2E-18 119.9 7.7 64 87-162 164-234 (276)
309 COG4133 CcmA ABC-type transpor 99.5 2.5E-13 5.4E-18 109.0 9.1 136 1-140 2-191 (209)
310 PRK14266 phosphate ABC transpo 99.5 2.1E-13 4.6E-18 116.0 8.8 64 87-162 147-217 (250)
311 cd03369 ABCC_NFT1 Domain 2 of 99.5 3.9E-13 8.5E-18 111.3 10.0 113 28-140 36-185 (207)
312 PLN03211 ABC transporter G-25; 99.5 1.6E-13 3.5E-18 131.6 8.7 125 28-162 96-279 (659)
313 cd03288 ABCC_SUR2 The SUR doma 99.5 2.1E-13 4.6E-18 116.7 8.3 113 28-140 49-216 (257)
314 cd03290 ABCC_SUR1_N The SUR do 99.4 4.5E-13 9.8E-18 111.8 9.7 55 86-140 140-203 (218)
315 COG0630 VirB11 Type IV secreto 99.4 6.6E-13 1.4E-17 116.6 11.1 115 28-147 145-259 (312)
316 cd03289 ABCC_CFTR2 The CFTR su 99.4 2E-13 4.3E-18 118.0 7.6 78 87-176 139-223 (275)
317 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 1.3E-13 2.9E-18 133.6 7.2 138 28-177 507-699 (710)
318 COG1123 ATPase components of v 99.4 8E-13 1.7E-17 121.9 11.9 123 28-162 319-502 (539)
319 PLN03073 ABC transporter F fam 99.4 3.6E-13 7.9E-18 130.1 10.1 124 28-162 537-696 (718)
320 cd03236 ABC_RNaseL_inhibitor_d 99.4 2.9E-13 6.4E-18 115.8 8.4 122 28-162 28-211 (255)
321 PRK14257 phosphate ABC transpo 99.4 2.2E-13 4.7E-18 120.7 7.7 65 87-162 226-296 (329)
322 PLN03073 ABC transporter F fam 99.4 5.7E-13 1.2E-17 128.7 11.0 56 85-140 343-402 (718)
323 PRK10938 putative molybdenum t 99.4 5.4E-13 1.2E-17 124.1 10.3 66 86-162 401-475 (490)
324 TIGR00954 3a01203 Peroxysomal 99.4 9.6E-13 2.1E-17 126.5 12.2 123 28-162 480-650 (659)
325 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 2.6E-13 5.7E-18 131.0 8.3 123 28-162 481-656 (686)
326 COG4175 ProV ABC-type proline/ 99.4 2.9E-13 6.3E-18 116.4 7.5 110 28-140 56-226 (386)
327 cd03244 ABCC_MRP_domain2 Domai 99.4 6.8E-13 1.5E-17 110.8 9.5 112 28-140 32-199 (221)
328 PRK14244 phosphate ABC transpo 99.4 1.4E-12 3.1E-17 111.0 11.5 64 87-162 150-220 (251)
329 KOG0058 Peptide exporter, ABC 99.4 3.3E-13 7.2E-18 126.7 8.2 120 28-162 496-674 (716)
330 PRK11176 lipid transporter ATP 99.4 2.7E-13 5.9E-18 128.5 7.7 126 28-165 371-554 (582)
331 PRK11174 cysteine/glutathione 99.4 4.8E-13 1E-17 127.0 9.3 122 28-162 378-555 (588)
332 PRK14256 phosphate ABC transpo 99.4 2.7E-12 5.8E-17 109.4 12.9 64 87-162 149-219 (252)
333 COG4618 ArpD ABC-type protease 99.4 8.2E-13 1.8E-17 119.7 10.0 125 28-166 364-548 (580)
334 PRK13409 putative ATPase RIL; 99.4 3.2E-13 6.8E-18 128.1 7.7 121 28-162 101-283 (590)
335 PRK14252 phosphate ABC transpo 99.4 9.9E-13 2.1E-17 113.0 10.0 64 87-162 162-232 (265)
336 PRK11288 araG L-arabinose tran 99.4 6.1E-13 1.3E-17 124.1 8.7 66 86-162 396-468 (501)
337 KOG0055 Multidrug/pheromone ex 99.4 4.7E-13 1E-17 132.1 8.2 120 28-162 381-559 (1228)
338 PRK11160 cysteine/glutathione 99.4 3.8E-13 8.2E-18 127.5 7.3 123 28-162 368-545 (574)
339 COG4962 CpaF Flp pilus assembl 99.4 8.7E-13 1.9E-17 114.9 8.8 113 28-147 175-291 (355)
340 COG4619 ABC-type uncharacteriz 99.4 1E-12 2.2E-17 103.9 8.1 113 25-140 28-195 (223)
341 COG4778 PhnL ABC-type phosphon 99.4 1.7E-12 3.8E-17 102.8 9.2 116 28-145 39-218 (235)
342 cd01124 KaiC KaiC is a circadi 99.4 7.6E-13 1.6E-17 107.3 7.4 130 28-162 1-161 (187)
343 KOG0057 Mitochondrial Fe/S clu 99.4 1.7E-12 3.6E-17 118.6 10.0 119 28-162 380-557 (591)
344 TIGR01192 chvA glucan exporter 99.4 1.2E-12 2.7E-17 124.2 9.3 123 28-162 363-541 (585)
345 TIGR01842 type_I_sec_PrtD type 99.4 1E-12 2.3E-17 123.7 8.5 113 28-140 346-515 (544)
346 COG4674 Uncharacterized ABC-ty 99.4 4.9E-13 1.1E-17 108.0 4.9 138 28-178 33-235 (249)
347 TIGR00955 3a01204 The Eye Pigm 99.4 1.2E-12 2.5E-17 125.1 8.3 66 87-162 167-239 (617)
348 TIGR03375 type_I_sec_LssB type 99.4 8.1E-13 1.8E-17 127.8 7.3 123 28-162 493-671 (694)
349 COG4178 ABC-type uncharacteriz 99.4 3.3E-12 7.1E-17 119.3 10.8 118 28-145 421-580 (604)
350 PRK10790 putative multidrug tr 99.4 1E-12 2.3E-17 124.8 7.5 113 28-140 369-536 (592)
351 KOG0061 Transporter, ABC super 99.4 1.1E-12 2.3E-17 124.9 7.4 71 87-167 171-249 (613)
352 COG4161 ArtP ABC-type arginine 99.4 8.3E-12 1.8E-16 98.3 10.7 54 87-140 142-202 (242)
353 TIGR02203 MsbA_lipidA lipid A 99.4 1.3E-12 2.8E-17 123.6 7.4 124 27-162 359-539 (571)
354 TIGR01846 type_I_sec_HlyB type 99.4 1.5E-12 3.2E-17 126.0 7.9 121 28-162 485-663 (694)
355 TIGR02857 CydD thiol reductant 99.4 2.4E-12 5.2E-17 120.8 9.0 113 28-140 350-518 (529)
356 COG0396 sufC Cysteine desulfur 99.4 6.8E-12 1.5E-16 103.7 10.5 66 87-153 145-217 (251)
357 TIGR00958 3a01208 Conjugate Tr 99.3 1.3E-12 2.8E-17 126.7 7.1 139 28-178 509-702 (711)
358 PRK10535 macrolide transporter 99.3 4.9E-12 1.1E-16 121.4 11.0 140 1-140 4-205 (648)
359 COG4987 CydC ABC-type transpor 99.3 3.8E-12 8.3E-17 116.1 9.5 120 28-162 366-544 (573)
360 PRK13657 cyclic beta-1,2-gluca 99.3 1.5E-12 3.2E-17 123.7 7.2 123 28-162 363-541 (588)
361 COG0488 Uup ATPase components 99.3 3.7E-12 8E-17 118.7 9.5 113 28-140 350-497 (530)
362 COG4988 CydD ABC-type transpor 99.3 4.5E-12 9.7E-17 116.8 9.4 123 28-162 349-526 (559)
363 COG1101 PhnK ABC-type uncharac 99.3 2.5E-12 5.5E-17 105.4 6.8 113 28-145 34-213 (263)
364 TIGR00956 3a01205 Pleiotropic 99.3 6.1E-12 1.3E-16 129.4 10.9 54 87-140 902-963 (1394)
365 PRK10789 putative multidrug tr 99.3 2.5E-12 5.5E-17 121.7 7.6 113 28-140 343-511 (569)
366 TIGR01193 bacteriocin_ABC ABC- 99.3 1.9E-12 4.2E-17 125.4 6.6 123 28-162 502-680 (708)
367 PRK10522 multidrug transporter 99.3 6.2E-12 1.3E-16 118.6 9.5 113 28-140 351-511 (547)
368 TIGR02868 CydC thiol reductant 99.3 3.6E-12 7.7E-17 119.6 7.8 111 28-138 363-528 (529)
369 cd03278 ABC_SMC_barmotin Barmo 99.3 7.1E-12 1.5E-16 103.2 8.6 130 10-140 4-177 (197)
370 TIGR01194 cyc_pep_trnsptr cycl 99.3 3.9E-12 8.4E-17 120.1 8.0 120 28-162 370-542 (555)
371 cd03280 ABC_MutS2 MutS2 homolo 99.3 5.2E-12 1.1E-16 104.2 6.7 113 20-139 20-151 (200)
372 cd03279 ABC_sbcCD SbcCD and ot 99.3 1.5E-11 3.3E-16 102.3 9.4 66 86-162 123-205 (213)
373 TIGR02204 MsbA_rel ABC transpo 99.3 5.6E-12 1.2E-16 119.4 7.6 123 28-162 368-546 (576)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.3 1.7E-11 3.7E-16 103.8 9.8 63 87-162 159-232 (243)
375 PLN03140 ABC transporter G fam 99.3 3.8E-12 8.1E-17 130.9 6.8 72 86-167 336-416 (1470)
376 PTZ00265 multidrug resistance 99.3 8.6E-12 1.9E-16 128.6 8.9 64 87-162 580-651 (1466)
377 PLN03232 ABC transporter C fam 99.3 7.1E-12 1.5E-16 129.8 7.9 136 28-178 1264-1458(1495)
378 KOG0055 Multidrug/pheromone ex 99.3 1E-11 2.2E-16 122.8 8.5 137 28-179 1018-1214(1228)
379 PLN03130 ABC transporter C fam 99.3 9.8E-12 2.1E-16 129.3 8.7 120 28-162 1267-1444(1622)
380 cd03240 ABC_Rad50 The catalyti 99.3 4.9E-11 1.1E-15 98.8 10.9 131 10-140 4-184 (204)
381 TIGR00956 3a01205 Pleiotropic 99.3 9.8E-12 2.1E-16 127.9 8.0 66 87-162 210-283 (1394)
382 KOG0062 ATPase component of AB 99.3 6E-12 1.3E-16 114.1 5.7 57 84-140 196-256 (582)
383 COG1618 Predicted nucleotide k 99.3 4.6E-11 9.9E-16 93.7 9.6 114 28-153 7-149 (179)
384 COG4181 Predicted ABC-type tra 99.3 3.9E-11 8.5E-16 95.3 9.3 54 87-140 147-208 (228)
385 PLN03140 ABC transporter G fam 99.2 2.9E-11 6.2E-16 124.5 9.7 55 86-140 1019-1080(1470)
386 TIGR00957 MRP_assoc_pro multi 99.2 1.9E-11 4.1E-16 126.9 8.4 136 28-178 1314-1508(1522)
387 cd03274 ABC_SMC4_euk Eukaryoti 99.2 1.2E-10 2.6E-15 97.0 11.6 65 85-162 126-201 (212)
388 cd01120 RecA-like_NTPases RecA 99.2 7.7E-11 1.7E-15 92.4 9.9 131 28-162 1-162 (165)
389 TIGR00957 MRP_assoc_pro multi 99.2 3.3E-11 7.1E-16 125.1 9.8 113 28-140 666-823 (1522)
390 COG4167 SapF ABC-type antimicr 99.2 4E-11 8.7E-16 96.2 8.0 121 28-165 41-226 (267)
391 PTZ00243 ABC transporter; Prov 99.2 2.2E-11 4.7E-16 126.5 8.4 135 28-177 1338-1532(1560)
392 COG1132 MdlB ABC-type multidru 99.2 1.9E-11 4.1E-16 115.7 7.3 136 28-178 357-552 (567)
393 PF00005 ABC_tran: ABC transpo 99.2 6.4E-12 1.4E-16 96.9 3.2 87 26-115 11-137 (137)
394 cd03239 ABC_SMC_head The struc 99.2 6.4E-11 1.4E-15 96.0 8.9 114 27-140 23-159 (178)
395 PTZ00265 multidrug resistance 99.2 4.5E-11 9.7E-16 123.4 9.9 64 87-162 1359-1430(1466)
396 COG4136 ABC-type uncharacteriz 99.2 1.5E-10 3.3E-15 90.1 10.2 115 25-139 27-195 (213)
397 PLN03232 ABC transporter C fam 99.2 3.7E-11 8E-16 124.6 8.6 113 28-140 645-801 (1495)
398 cd03276 ABC_SMC6_euk Eukaryoti 99.2 3.1E-10 6.8E-15 93.5 12.4 118 23-140 18-177 (198)
399 PLN03130 ABC transporter C fam 99.2 4.8E-11 1E-15 124.2 9.1 113 28-140 645-801 (1622)
400 cd03270 ABC_UvrA_I The excisio 99.2 1E-10 2.2E-15 98.3 9.4 64 87-162 138-210 (226)
401 cd03227 ABC_Class2 ABC-type Cl 99.2 1E-10 2.2E-15 93.4 8.8 114 23-140 17-142 (162)
402 PRK08533 flagellar accessory p 99.2 8.8E-11 1.9E-15 99.0 8.9 176 15-197 13-223 (230)
403 cd03243 ABC_MutS_homologs The 99.2 5.5E-11 1.2E-15 98.2 7.4 120 18-140 20-152 (202)
404 TIGR01271 CFTR_protein cystic 99.2 4.7E-11 1E-15 123.7 8.6 113 28-140 454-609 (1490)
405 cd03283 ABC_MutS-like MutS-lik 99.2 9.2E-11 2E-15 96.8 8.5 115 17-141 15-150 (199)
406 COG1245 Predicted ATPase, RNas 99.2 2.4E-10 5.1E-15 102.8 11.3 124 28-162 369-528 (591)
407 cd03275 ABC_SMC1_euk Eukaryoti 99.2 7.3E-11 1.6E-15 100.5 7.8 64 87-162 156-230 (247)
408 PTZ00243 ABC transporter; Prov 99.2 4.5E-11 9.7E-16 124.1 7.7 113 28-140 688-843 (1560)
409 TIGR01271 CFTR_protein cystic 99.2 7.1E-11 1.5E-15 122.4 8.9 67 87-165 1354-1427(1490)
410 cd03273 ABC_SMC2_euk Eukaryoti 99.1 2.5E-10 5.4E-15 97.4 9.7 53 87-139 167-229 (251)
411 cd03271 ABC_UvrA_II The excisi 99.1 3.9E-10 8.4E-15 96.7 10.7 64 87-162 170-243 (261)
412 COG4172 ABC-type uncharacteriz 99.1 2.2E-10 4.8E-15 101.7 9.3 123 28-162 315-499 (534)
413 KOG0060 Long-chain acyl-CoA tr 99.1 2.8E-10 6.1E-15 104.7 9.5 113 28-140 463-628 (659)
414 TIGR03877 thermo_KaiC_1 KaiC d 99.1 2.9E-10 6.4E-15 96.2 7.5 169 25-198 20-231 (237)
415 TIGR02655 circ_KaiC circadian 99.1 2E-10 4.3E-15 106.8 6.7 176 28-215 265-477 (484)
416 PRK06067 flagellar accessory p 99.1 4.7E-10 1E-14 94.6 8.2 165 28-198 27-226 (234)
417 COG4107 PhnK ABC-type phosphon 99.0 1.2E-09 2.5E-14 87.2 9.1 120 25-145 31-218 (258)
418 smart00382 AAA ATPases associa 99.0 1.6E-09 3.4E-14 81.9 9.2 111 26-138 2-125 (148)
419 COG4615 PvdE ABC-type sideroph 99.0 1.4E-09 2.9E-14 96.5 9.7 110 28-140 351-510 (546)
420 COG1245 Predicted ATPase, RNas 99.0 5.8E-10 1.3E-14 100.3 7.2 62 83-144 210-278 (591)
421 KOG0064 Peroxisomal long-chain 99.0 7.6E-10 1.6E-14 101.1 7.9 114 28-141 510-671 (728)
422 PRK04328 hypothetical protein; 99.0 6.5E-10 1.4E-14 94.8 7.1 168 26-198 23-233 (249)
423 smart00534 MUTSac ATPase domai 99.0 1.1E-09 2.4E-14 89.3 7.4 106 28-142 1-125 (185)
424 KOG0927 Predicted transporter 99.0 1.3E-09 2.8E-14 99.8 8.0 57 84-140 219-280 (614)
425 TIGR03880 KaiC_arch_3 KaiC dom 99.0 1.7E-09 3.6E-14 90.6 8.1 166 26-198 16-217 (224)
426 cd03277 ABC_SMC5_euk Eukaryoti 99.0 3.7E-09 7.9E-14 88.2 10.0 42 9-51 5-48 (213)
427 KOG0927 Predicted transporter 99.0 6.3E-10 1.4E-14 101.7 5.7 118 28-145 418-572 (614)
428 cd03281 ABC_MSH5_euk MutS5 hom 99.0 2.9E-09 6.2E-14 88.8 8.8 107 27-143 30-158 (213)
429 TIGR02655 circ_KaiC circadian 99.0 3.1E-09 6.8E-14 98.8 9.9 188 25-217 20-263 (484)
430 KOG0054 Multidrug resistance-a 99.0 3.3E-09 7.1E-14 107.2 10.4 142 24-177 544-730 (1381)
431 TIGR03878 thermo_KaiC_2 KaiC d 98.9 3.5E-09 7.7E-14 90.8 9.0 164 27-197 37-252 (259)
432 KOG0066 eIF2-interacting prote 98.9 7.9E-10 1.7E-14 99.2 5.0 112 29-140 616-762 (807)
433 KOG0056 Heavy metal exporter H 98.9 1.6E-09 3.5E-14 98.3 7.0 111 27-140 565-734 (790)
434 COG4172 ABC-type uncharacteriz 98.9 9.9E-09 2.1E-13 91.4 11.8 65 87-162 158-230 (534)
435 PRK04296 thymidine kinase; Pro 98.9 6.6E-09 1.4E-13 85.1 10.0 124 28-162 4-138 (190)
436 COG1855 ATPase (PilT family) [ 98.9 4.9E-10 1.1E-14 100.5 3.1 124 28-162 265-392 (604)
437 TIGR02237 recomb_radB DNA repa 98.9 2.1E-09 4.5E-14 88.9 6.4 165 25-196 11-208 (209)
438 PRK09361 radB DNA repair and r 98.9 3.3E-09 7.2E-14 88.8 7.6 162 27-196 24-221 (225)
439 KOG0054 Multidrug resistance-a 98.9 4.5E-09 9.8E-14 106.3 9.6 137 28-179 1168-1363(1381)
440 TIGR02239 recomb_RAD51 DNA rep 98.9 2.5E-09 5.4E-14 94.2 6.6 164 27-197 97-312 (316)
441 PRK09302 circadian clock prote 98.9 7.6E-09 1.6E-13 96.9 9.9 186 28-217 33-273 (509)
442 KOG0065 Pleiotropic drug resis 98.9 6.4E-09 1.4E-13 103.7 9.6 44 101-145 944-995 (1391)
443 cd03284 ABC_MutS1 MutS1 homolo 98.9 1.7E-08 3.6E-13 84.4 10.7 105 27-140 31-154 (216)
444 TIGR03881 KaiC_arch_4 KaiC dom 98.9 1.3E-08 2.9E-13 85.3 10.0 165 27-197 21-226 (229)
445 TIGR02236 recomb_radA DNA repa 98.9 7.3E-09 1.6E-13 91.0 8.5 165 27-196 96-308 (310)
446 COG5265 ATM1 ABC-type transpor 98.9 4.6E-09 1E-13 93.8 7.1 137 28-179 291-487 (497)
447 cd03285 ABC_MSH2_euk MutS2 hom 98.9 5.4E-09 1.2E-13 87.7 7.2 107 27-139 31-153 (222)
448 PF06745 KaiC: KaiC; InterPro 98.9 2.6E-09 5.6E-14 89.5 4.9 169 26-198 19-222 (226)
449 PRK13695 putative NTPase; Prov 98.9 2.4E-08 5.3E-13 80.3 10.2 111 29-140 3-137 (174)
450 TIGR01069 mutS2 MutS2 family p 98.8 3.8E-09 8.2E-14 103.0 6.3 110 27-141 323-447 (771)
451 cd01394 radB RadB. The archaea 98.8 9.2E-09 2E-13 85.7 7.7 163 26-196 19-217 (218)
452 cd03282 ABC_MSH4_euk MutS4 hom 98.8 1.5E-08 3.3E-13 83.9 8.1 114 27-145 30-157 (204)
453 PLN03186 DNA repair protein RA 98.8 1.7E-08 3.8E-13 89.6 8.6 164 28-197 125-338 (342)
454 PLN03187 meiotic recombination 98.8 2.5E-08 5.3E-13 88.6 8.4 167 28-196 128-339 (344)
455 PF03266 NTPase_1: NTPase; In 98.8 1.4E-09 3.1E-14 87.3 -0.0 38 103-140 94-136 (168)
456 cd01122 GP4d_helicase GP4d_hel 98.7 5.3E-08 1.2E-12 83.7 9.0 38 25-62 29-66 (271)
457 PRK04301 radA DNA repair and r 98.7 5.5E-08 1.2E-12 85.8 9.0 164 28-197 104-315 (317)
458 TIGR02238 recomb_DMC1 meiotic 98.7 6.1E-08 1.3E-12 85.3 9.1 158 28-196 98-310 (313)
459 cd01123 Rad51_DMC1_radA Rad51_ 98.7 3.8E-08 8.3E-13 82.7 7.5 174 18-196 11-234 (235)
460 PRK09302 circadian clock prote 98.7 5.1E-08 1.1E-12 91.3 8.9 183 28-216 275-488 (509)
461 COG4138 BtuD ABC-type cobalami 98.7 5.8E-08 1.3E-12 77.7 7.1 35 106-140 152-193 (248)
462 PF00004 AAA: ATPase family as 98.7 4.2E-08 9.1E-13 74.4 5.9 70 29-117 1-71 (132)
463 PTZ00035 Rad51 protein; Provis 98.7 1.1E-07 2.4E-12 84.5 9.0 163 28-196 120-332 (337)
464 cd03241 ABC_RecN RecN ATPase i 98.6 9.7E-08 2.1E-12 82.6 8.0 54 87-140 171-234 (276)
465 TIGR00630 uvra excinuclease AB 98.6 1.5E-07 3.1E-12 93.3 10.0 64 87-162 829-902 (924)
466 cd03287 ABC_MSH3_euk MutS3 hom 98.6 2.1E-07 4.5E-12 78.0 9.6 108 27-145 32-160 (222)
467 KOG0062 ATPase component of AB 98.6 1.2E-07 2.7E-12 86.5 8.7 111 29-140 393-540 (582)
468 PRK05973 replicative DNA helic 98.6 2.1E-07 4.5E-12 78.7 9.2 123 27-153 65-209 (237)
469 PRK00409 recombination and DNA 98.6 8E-08 1.7E-12 94.0 6.4 111 28-143 329-454 (782)
470 KOG2355 Predicted ABC-type tra 98.6 3.3E-07 7.1E-12 75.2 8.8 56 85-140 146-209 (291)
471 cd00984 DnaB_C DnaB helicase C 98.6 2.6E-07 5.7E-12 77.9 8.7 38 25-62 12-49 (242)
472 cd00009 AAA The AAA+ (ATPases 98.6 3.2E-07 7E-12 69.8 8.3 78 26-116 19-96 (151)
473 PRK00635 excinuclease ABC subu 98.6 3.7E-07 8E-12 94.9 11.1 54 87-140 810-873 (1809)
474 COG2401 ABC-type ATPase fused 98.6 3.2E-07 7E-12 82.2 9.2 124 22-145 405-574 (593)
475 PF13173 AAA_14: AAA domain 98.6 3E-07 6.4E-12 70.3 7.8 95 26-139 2-99 (128)
476 PRK00349 uvrA excinuclease ABC 98.5 4.1E-07 8.9E-12 90.3 10.4 54 87-140 831-894 (943)
477 COG1222 RPT1 ATP-dependent 26S 98.5 9.6E-08 2.1E-12 83.9 5.3 70 28-116 187-256 (406)
478 cd01393 recA_like RecA is a b 98.5 1.1E-07 2.4E-12 79.5 5.4 155 25-183 18-221 (226)
479 cd00983 recA RecA is a bacter 98.5 3E-07 6.5E-12 81.0 7.6 162 28-196 57-264 (325)
480 PF05496 RuvB_N: Holliday junc 98.5 1.2E-06 2.6E-11 73.0 10.5 78 27-131 51-130 (233)
481 COG1129 MglA ABC-type sugar tr 98.5 4.7E-07 1E-11 83.5 8.7 67 85-162 400-473 (500)
482 cd01125 repA Hexameric Replica 98.5 7.6E-07 1.6E-11 75.3 9.1 112 28-140 3-160 (239)
483 CHL00195 ycf46 Ycf46; Provisio 98.5 1.1E-06 2.3E-11 81.8 10.7 70 28-116 261-330 (489)
484 PRK06893 DNA replication initi 98.5 8E-07 1.7E-11 74.8 8.6 38 24-62 37-74 (229)
485 TIGR02012 tigrfam_recA protein 98.5 4.1E-07 8.9E-12 80.1 6.9 109 28-140 57-193 (321)
486 KOG0739 AAA+-type ATPase [Post 98.4 2E-07 4.4E-12 80.2 4.5 92 5-116 146-237 (439)
487 KOG0734 AAA+-type ATPase conta 98.4 2.8E-07 6.1E-12 84.6 5.5 69 28-115 339-407 (752)
488 KOG0736 Peroxisome assembly fa 98.4 5.9E-07 1.3E-11 85.5 7.4 80 18-116 697-776 (953)
489 KOG0733 Nuclear AAA ATPase (VC 98.4 3.6E-07 7.8E-12 85.1 5.8 70 28-116 225-294 (802)
490 PF03308 ArgK: ArgK protein; 98.4 1.1E-06 2.3E-11 74.6 8.0 137 27-177 30-190 (266)
491 COG3910 Predicted ATPase [Gene 98.4 8.9E-07 1.9E-11 71.6 6.9 31 21-51 32-62 (233)
492 PF13481 AAA_25: AAA domain; P 98.4 7.5E-07 1.6E-11 72.5 6.6 125 15-140 21-190 (193)
493 KOG0066 eIF2-interacting prote 98.4 5.9E-07 1.3E-11 81.0 6.0 55 86-140 412-470 (807)
494 PRK09354 recA recombinase A; P 98.3 9.5E-07 2.1E-11 78.5 6.7 109 28-140 62-198 (349)
495 KOG0730 AAA+-type ATPase [Post 98.3 3.4E-07 7.4E-12 85.8 3.9 71 28-117 470-540 (693)
496 KOG0733 Nuclear AAA ATPase (VC 98.3 4.4E-07 9.6E-12 84.5 4.5 70 28-116 547-616 (802)
497 PTZ00454 26S protease regulato 98.3 7.1E-07 1.5E-11 81.1 5.4 69 28-115 181-249 (398)
498 TIGR01241 FtsH_fam ATP-depende 98.3 6.7E-07 1.5E-11 83.6 5.0 69 28-115 90-158 (495)
499 CHL00176 ftsH cell division pr 98.3 2.1E-06 4.6E-11 82.2 8.5 70 28-116 218-287 (638)
500 KOG0727 26S proteasome regulat 98.3 2.4E-06 5.3E-11 72.1 7.6 70 28-116 191-260 (408)
No 1
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.9e-31 Score=230.39 Aligned_cols=191 Identities=24% Similarity=0.353 Sum_probs=163.4
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC------cccHHHH
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP------SLQHKVM 96 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 96 (241)
-.+..++||.|.||.||||||.+++..++.. .+|+|++ ++|+ ++|...++.|+..... +.+.+.+
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~--~~vLYVs-GEES------~~QiklRA~RL~~~~~~l~l~aEt~~e~I 160 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR--GKVLYVS-GEES------LQQIKLRADRLGLPTNNLYLLAETNLEDI 160 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhc--CcEEEEe-CCcC------HHHHHHHHHHhCCCccceEEehhcCHHHH
Confidence 3444589999999999999999999999877 4999999 9888 6777788888876544 3478889
Q ss_pred HHHHHhcCCcEEEEcCCCCHHhH-----------------HHHHHHHhCCcEEEEeecCCChhhhhcCC-cccccccccc
Q 026207 97 IEAVENHMPEVIIVDEIGTEAEA-----------------HACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIGGVD 158 (241)
Q Consensus 97 ~~~~l~~~p~vlilDE~~~~~d~-----------------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~~~d 158 (241)
++.+...+|+++|+|+||+...+ +..+.++.+|++++.+-|.++ ++.+++| .++|| +|
T Consensus 161 ~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTK-eG~IAGPrvLEHm---VD 236 (456)
T COG1066 161 IAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTK-EGAIAGPRVLEHM---VD 236 (456)
T ss_pred HHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcc-cccccCchheeee---ee
Confidence 99999999999999999987655 223367888999999999999 9999999 89999 99
Q ss_pred EEEe--CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce---------EEeec----chHHHHHHhcCCCcc-ceeeec
Q 026207 159 TVTL--GDEEARARRCQKSILERKAPPTFYFLIEMRERHY---------WVTHK----TEKSVDMLLRGKTPL-VEIRKR 222 (241)
Q Consensus 159 ~V~~--~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~---------~~~~~----~~~~~~~~l~G~~~~-~e~~~~ 222 (241)
+|++ |++...+ |++|.+|||||++++.++|+|.+.|+ |+... .++++.+.+||+||+ +|+|++
T Consensus 237 tVlyFEGd~~~~~-RiLR~vKNRFG~t~EiGvFeM~~~GL~eV~npS~lFL~er~~~~~GS~v~~~~EGtRpllvEvQAL 315 (456)
T COG1066 237 TVLYFEGDRHSRY-RILRSVKNRFGATNELGVFEMTENGLREVSNPSALFLSERGEQTPGSAVVVVMEGTRPLLVEIQAL 315 (456)
T ss_pred EEEEEeccCCCce-eeeehhcccCCcccceeEEEEecCCeeEecCcHHhHhhcCCCCCCCcEEEEEEecccceEEEeeec
Confidence 9999 8887777 99999999999999999999999998 55542 368899999999999 599999
Q ss_pred cCCCc
Q 026207 223 DDRFN 227 (241)
Q Consensus 223 ~~~~~ 227 (241)
.....
T Consensus 316 v~~s~ 320 (456)
T COG1066 316 VSPSS 320 (456)
T ss_pred ccccc
Confidence 55544
No 2
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=99.89 E-value=2.1e-23 Score=171.25 Aligned_cols=150 Identities=41% Similarity=0.563 Sum_probs=131.1
Q ss_pred ccceeeEEEEEeEEeeCcce-ee-----c-cE-EEEEeCCCchHHHHHHHHHHhcccc----CCCeEEEEcCCcccCCCC
Q 026207 4 LRNVFLLIVKFFYALYSINK-II-----F-DF-FLSYFRPGVGKTTVMREIARVLSDE----FQKRVVIVDTSNEIGGDG 71 (241)
Q Consensus 4 ~~~~~~~~~r~~~~~~~~~~-~~-----~-g~-vll~Gp~GsGKTTLl~~l~~~l~~~----~g~~v~~i~~~~e~~~~~ 71 (241)
++|+.++.||+-+..++-.. .. + .+ ++++||||+||||+|+.+++.++.. .+.+|..+|+.+|+.+.
T Consensus 107 ~rdI~slniRv~r~v~Gt~~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~- 185 (308)
T COG3854 107 IRDISSLNIRVARQVFGTANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGC- 185 (308)
T ss_pred eeeeceeeeeehhhhhccchHHHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhcc-
Confidence 67899999999999987643 11 1 13 9999999999999999999999877 67899999999999874
Q ss_pred CCccccccchhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcCCccc
Q 026207 72 DIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPILS 151 (241)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~ 151 (241)
....+..++..|+++.+.+.+...++.+..++.|+++|+||++..+|..++..+...|+.+++|.|++..++++.+|.+.
T Consensus 186 ~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaHG~~iedl~krp~lk 265 (308)
T COG3854 186 LNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALHAGVKLITTAHGNGIEDLIKRPTLK 265 (308)
T ss_pred ccCCchhhhhhhhhhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHhcCcEEEEeeccccHHHhhcChhHH
Confidence 22334444556999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 026207 152 DLI 154 (241)
Q Consensus 152 ~l~ 154 (241)
+++
T Consensus 266 dlv 268 (308)
T COG3854 266 DLV 268 (308)
T ss_pred HHH
Confidence 984
No 3
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.87 E-value=2.1e-22 Score=180.18 Aligned_cols=187 Identities=24% Similarity=0.371 Sum_probs=140.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC------cccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP------SLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l 101 (241)
+++|.|+||+|||||+.+++..+.+. +.+++|++ .+|.. .+...++.++..... ......+++.+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs-~EEs~------~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVS-GEESP------EQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-CCcCH------HHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 79999999999999999999988765 57899998 55542 222222233332211 234566677777
Q ss_pred hcCCcEEEEcCCCCHHhH-----------------HHHHHHHhCCcEEEEeecCCChhhhhcCC-ccccccccccEEEe-
Q 026207 102 NHMPEVIIVDEIGTEAEA-----------------HACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIGGVDTVTL- 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~-----------------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~~~d~V~~- 162 (241)
..+|+++|+|+++..... .....+++.|++++.+.|.++ ++.+++| .++|+ +|.|++
T Consensus 156 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk-~g~~aG~~~leh~---vD~Vi~l 231 (372)
T cd01121 156 ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTK-EGSIAGPKVLEHM---VDTVLYF 231 (372)
T ss_pred hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccC-CCcccCcccchhh---ceEEEEE
Confidence 789999999999765321 112246788999999999987 6777888 78999 999998
Q ss_pred -CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce---------EEeec----chHHHHHHhcCCCccc-eeeeccCCCc
Q 026207 163 -GDEEARARRCQKSILERKAPPTFYFLIEMRERHY---------WVTHK----TEKSVDMLLRGKTPLV-EIRKRDDRFN 227 (241)
Q Consensus 163 -~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~---------~~~~~----~~~~~~~~l~G~~~~~-e~~~~~~~~~ 227 (241)
++..... |.++.+|+|++++++...|+|++.|+ |+... .++++.+.++|+||++ |+|++.....
T Consensus 232 e~~~~~~~-R~Lri~KnR~g~~~ei~~F~i~~~Gl~~v~~ps~~fl~~~~~~~~g~~~~~~~eg~r~~~~e~qal~~~~~ 310 (372)
T cd01121 232 EGDRHSEY-RILRSVKNRFGSTNELGVFEMRENGLREVSNPSELFLSEREEDVPGSAVTVVMEGSRPLLVEVQALVSPTS 310 (372)
T ss_pred EcCCCCcE-EEEEEEeCCCCCCCCEEEEEECCCCeEEccChhhheecCCCCCCCccEEEeeccCCcceeeEeehhccCCC
Confidence 5443333 88999999999999999999999998 44331 3688999999999994 9999965544
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=2.2e-21 Score=158.29 Aligned_cols=140 Identities=20% Similarity=0.321 Sum_probs=103.7
Q ss_pred CccccceeeEEEEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~- 70 (241)
|++++|+. +.|+....++| ++.|+||+|||||||+|++.++-.++.|. ++++ +..+...
T Consensus 2 mi~i~~l~--------K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~--I~i~-g~~~~~~~ 70 (240)
T COG1126 2 MIEIKNLS--------KSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGS--ITVD-GEDVGDKK 70 (240)
T ss_pred eEEEEeee--------EEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCce--EEEC-CEeccchh
Confidence 67777774 56777666665 69999999999999999999999888665 6666 3222100
Q ss_pred ----------------CCCccccc------------------------------cch----hhcCCCCCcccHHHHHHHH
Q 026207 71 ----------------GDIPHSAI------------------------------GTA----RRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 71 ----------------~~~~~~~~------------------------------~~~----~~~~~~~~~~~~~~~~~~~ 100 (241)
...||... |.. .+-..+|+|++||++++++
T Consensus 71 ~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 11122100 000 0122357788999999999
Q ss_pred HhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 101 ENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.++|+++++|||++.+||+... ..++.|.|++.++|.+. ...++ +|+|++
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~--------FAr~V---adrviF 208 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG--------FAREV---ADRVIF 208 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH--------HHHHh---hheEEE
Confidence 99999999999999999996543 56778999999999998 56667 899998
No 5
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.3e-21 Score=157.95 Aligned_cols=147 Identities=21% Similarity=0.235 Sum_probs=105.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCc-----------cccccc--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIP-----------HSAIGT-------- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~-----------~~~~~~-------- 80 (241)
++.|.||||+||||+++.|+.++.|+.|. ++++ +-+...+ +..+ .+++.+
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~~G~--v~id-g~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPDSGK--VTID-GVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCCCce--EEEe-ecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 89999999999999999999999999655 5555 2111100 0000 000000
Q ss_pred ---------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEE
Q 026207 81 ---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVML 132 (241)
Q Consensus 81 ---------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~v 132 (241)
-+|..-+|.+++|++.+++++.|+|+++++|||.+++|..+. .+.++.|.++
T Consensus 107 ~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~v 186 (245)
T COG4555 107 RKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAV 186 (245)
T ss_pred hhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEE
Confidence 024555778899999999999999999999999999999543 3567779999
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEE
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFL 188 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~ 188 (241)
++++|.+. +++.+ ||+|++ ..++..+.+...++..+.+..+.+.+
T Consensus 187 iFSSH~m~--------Eveal---CDrvivlh~Gevv~~gs~~~l~~r~~~~~le~~ 232 (245)
T COG4555 187 IFSSHIMQ--------EVEAL---CDRVIVLHKGEVVLEGSIEALDARTVLRNLEEI 232 (245)
T ss_pred EEecccHH--------HHHHh---hheEEEEecCcEEEcCCHHHHHHHHhhcCHHHH
Confidence 99999996 78888 999998 44444344666666666555444433
No 6
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=5.6e-20 Score=155.00 Aligned_cols=148 Identities=15% Similarity=0.204 Sum_probs=102.5
Q ss_pred CccccceeeEEEEEeE-EeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCC---------------CeEEEE
Q 026207 1 MLRLRNVFLLIVKFFY-ALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQ---------------KRVVIV 61 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~-~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g---------------~~v~~i 61 (241)
|++++|++ ++.-+ .++..++ +..| ++.|+||||+|||||++.++|.++|..| .++.|+
T Consensus 4 ~i~v~nl~---v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 4 MIEVENLT---VSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred EEEEeeeE---EEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 45677774 33331 3555543 3333 8999999999999999999999887732 356777
Q ss_pred cCCcccCCC-----------CCCccc-ccc----------------------chhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 62 DTSNEIGGD-----------GDIPHS-AIG----------------------TARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 62 ~~~~e~~~~-----------~~~~~~-~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
++..++... +..... .+. .-+++..+|+|++||+.+|+|+.++|++
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 654322110 000000 000 0135677889999999999999999999
Q ss_pred EEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++||||+.+.|+... .+.++.|++|++++|... .+.+. +|+|++
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~--------~v~~~---~D~vi~ 211 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG--------LVMAY---FDRVIC 211 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH--------HhHhh---CCEEEE
Confidence 999999999999432 355666999999999997 44455 788887
No 7
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.82 E-value=3.7e-20 Score=156.75 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=87.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC---------CCCcccc-cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD---------GDIPHSA-IG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~---------~~~~~~~-~~ 79 (241)
++.|.||||||||||++++++.+++..|. ++.|+++....... +..|+.. .+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~ 109 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFG 109 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccccc
Confidence 89999999999999999999999977432 34455433222110 1111110 00
Q ss_pred ----------------------chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHH-HhCC
Q 026207 80 ----------------------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSI-AERG 129 (241)
Q Consensus 80 ----------------------~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~-~~~g 129 (241)
..+.+..+|+|.+|++.+++++.++|+++++|||++.+|.... ... .++|
T Consensus 110 ~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~ 189 (258)
T COG1120 110 RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKG 189 (258)
T ss_pred CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcC
Confidence 0023455788899999999999999999999999999999432 233 3669
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++++++|..+ ..... ||.+++
T Consensus 190 ~tvv~vlHDlN--------~A~ry---ad~~i~ 211 (258)
T COG1120 190 LTVVMVLHDLN--------LAARY---ADHLIL 211 (258)
T ss_pred CEEEEEecCHH--------HHHHh---CCEEEE
Confidence 99999999998 33333 788777
No 8
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=1.9e-20 Score=155.13 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=103.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC----C-CCCccc------------c--c----c-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----D-GDIPHS------------A--I----G----- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~----~-~~~~~~------------~--~----~----- 79 (241)
+..+.||||+||||++++|++.+.++.|. +.+. +.++.. . ++.|.. . + |
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~~G~--I~~~-g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e 106 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPTEGE--ITWN-GGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAE 106 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCccCce--EEEc-CcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHH
Confidence 79999999999999999999999987554 3333 111100 0 111110 0 0 0
Q ss_pred -------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHH-------HHHHHHhCCcEEEEe
Q 026207 80 -------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGT 135 (241)
Q Consensus 80 -------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~-------~~~~~~~~g~~vi~t 135 (241)
+. ..+..+|.+.+|+..+-+++.|+|+++|||||++++||- .+...++.|.|||.|
T Consensus 107 ~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifS 186 (300)
T COG4152 107 IQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFS 186 (300)
T ss_pred HHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEe
Confidence 00 123446677899999999999999999999999999993 334677899999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCCC
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPT 184 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~ 184 (241)
+|.+. .++.+ ||++++ .++.....+....+++.+|...
T Consensus 187 sH~Me--------~vEeL---CD~llmL~kG~~V~~G~v~~ir~~~Gkk~ 225 (300)
T COG4152 187 SHRME--------HVEEL---CDRLLMLKKGQTVLYGTVEDIRRSFGKKR 225 (300)
T ss_pred cchHH--------HHHHH---hhhhheecCCceEEeccHHHHHHhcCCce
Confidence 99998 78888 999988 4444444477777777777654
No 9
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.80 E-value=4.2e-20 Score=169.44 Aligned_cols=186 Identities=26% Similarity=0.385 Sum_probs=137.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC------CcccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE------PSLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l 101 (241)
+++|.|+||+|||||+.+++....+. +.+++|++ .+|.. .+...++.++.... .......+.+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs-~EEs~------~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVS-GEESL------QQIKMRAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEE-CcCCH------HHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 79999999999999999999887655 56899998 66552 22222222222211 1234566666777
Q ss_pred hcCCcEEEEcCCCCHHhH------------H-----HHHHHHhCCcEEEEeecCCChhhhhcCC-ccccccccccEEEe-
Q 026207 102 NHMPEVIIVDEIGTEAEA------------H-----ACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIGGVDTVTL- 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~------------~-----~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~~~d~V~~- 162 (241)
..+|+++|+|++++.... . ....+++.|++++.+.|.++ ++.+++| .++++ +|.|++
T Consensus 168 ~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtk-eg~~aG~~~le~l---vD~VI~L 243 (454)
T TIGR00416 168 EENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTK-EGSIAGPKVLEHM---VDTVLYF 243 (454)
T ss_pred hcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecccc-CCccCCcccEeee---ceEEEEE
Confidence 789999999999865321 1 11246788999999999997 7778888 68999 999998
Q ss_pred -CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce---------EEeec----chHHHHHHhcCCCcc-ceeeeccCCC
Q 026207 163 -GDEEARARRCQKSILERKAPPTFYFLIEMRERHY---------WVTHK----TEKSVDMLLRGKTPL-VEIRKRDDRF 226 (241)
Q Consensus 163 -~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~---------~~~~~----~~~~~~~~l~G~~~~-~e~~~~~~~~ 226 (241)
++..... |.++.+|+|+|+++....|+|+++|+ |+... .++++.+.++|.+|+ +|+|++....
T Consensus 244 e~~~~~~~-R~L~v~K~R~g~~~e~~~f~it~~Gl~~v~~ps~~f~~~~~~~~~g~~~~~~~~G~r~~~veVqalv~~~ 321 (454)
T TIGR00416 244 EGDRDSRF-RILRSVKNRFGATNEIGIFEMTEQGLREVLNPSAIFLSRREEPMSGSSITVTWEGTRPLLVEIQALVSPT 321 (454)
T ss_pred eccCCCcE-EEEEEecCCCCCCCcEEEEEEecCCceecCChhHhhhccCCCCCCceEEEEEEEcccCEEEEEEEEecCC
Confidence 4333333 78999999999999999999999998 33321 357889999999998 5999995444
No 10
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.78 E-value=3.5e-19 Score=148.53 Aligned_cols=146 Identities=20% Similarity=0.210 Sum_probs=100.1
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------- 69 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-------- 69 (241)
|++++||++..- -+...... .+..| ++.++||+||||||+|++|.+++.++.|. ++++ +.++..
T Consensus 1 MI~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~--I~i~-g~~i~~~d~~~LRr 75 (309)
T COG1125 1 MIEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE--ILID-GEDISDLDPVELRR 75 (309)
T ss_pred CceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCce--EEEC-CeecccCCHHHHHH
Confidence 899999974322 11122221 23333 89999999999999999999999999766 6665 333221
Q ss_pred C--------CCCccccc----c-------c-----------------------h-hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 70 D--------GDIPHSAI----G-------T-----------------------A-RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 70 ~--------~~~~~~~~----~-------~-----------------------~-~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
. +..||... . + . +.-..+|+|.+||+.+++++..+|+
T Consensus 76 ~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ 155 (309)
T COG1125 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPP 155 (309)
T ss_pred hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCC
Confidence 0 11122100 0 0 0 1122357788999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++.+|+-... .-++-|.|+++++|..+ +..++ +|+|++
T Consensus 156 ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid--------EA~kL---adri~v 208 (309)
T COG1125 156 ILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID--------EALKL---ADRIAV 208 (309)
T ss_pred eEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH--------HHHhh---hceEEE
Confidence 99999999999993322 22456899999999998 55567 788887
No 11
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=7.6e-19 Score=159.20 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=102.4
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC-cccHHHHHHHHH
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP-SLQHKVMIEAVE 101 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l 101 (241)
..++|++|++||+||||||+|.+++..+... ..++++++|+.|+..++. .|+++.+. ++.+...+++++
T Consensus 255 ~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~-~~nI~TiEDPVE~~~~gI---------~Q~qVN~k~gltfa~~LRa~L 324 (500)
T COG2804 255 NRPQGLILVTGPTGSGKTTTLYAALSELNTP-ERNIITIEDPVEYQLPGI---------NQVQVNPKIGLTFARALRAIL 324 (500)
T ss_pred hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCC-CceEEEeeCCeeeecCCc---------ceeecccccCCCHHHHHHHHh
Confidence 4788899999999999999999999988755 567999999999854432 36677666 899999999999
Q ss_pred hcCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 102 NHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
+++||+|+++||++.+.++.+.+|+.+||.|++|.|.+++.+++.|
T Consensus 325 RqDPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtnda~~ai~R 370 (500)
T COG2804 325 RQDPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPGAITR 370 (500)
T ss_pred ccCCCeEEEeccCCHHHHHHHHHHHhcCCeEeeecccCchHHHHHH
Confidence 9999999999999999999999999999999999999999888864
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=5e-19 Score=154.18 Aligned_cols=143 Identities=20% Similarity=0.283 Sum_probs=98.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCC-------------c---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDI-------------P--- 74 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~-------------~--- 74 (241)
+++|.||||||||||++++++.+.++.|. ++.|+.+.......... +
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~ 112 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEE 112 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhH
Confidence 89999999999999999999999887432 23444322221110000 0
Q ss_pred -cc-------cccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCC-cEEEE
Q 026207 75 -HS-------AIGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERG-VMLIG 134 (241)
Q Consensus 75 -~~-------~~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g-~~vi~ 134 (241)
.. .++. ..++..+|.|++++..++.++.++|+++|+|||++++|+.... ..+..| .+|++
T Consensus 113 ~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvli 192 (293)
T COG1131 113 AEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILL 192 (293)
T ss_pred HHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 00 0000 0123446778999999999999999999999999999995433 444555 89999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCC
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKA 181 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g 181 (241)
|+|..+ .++++ ||+|++ .++...+.+..+.+...++
T Consensus 193 ssH~l~--------e~~~~---~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 193 STHILE--------EAEEL---CDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred eCCcHH--------HHHHh---CCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 999998 78888 999888 5554433355555555543
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.1e-18 Score=143.98 Aligned_cols=124 Identities=18% Similarity=0.123 Sum_probs=86.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCcc------cccc--------c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIPH------SAIG--------T 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~~------~~~~--------~ 80 (241)
++.|+||+|||||||++.++|+..++.|. ++.|+.+...+..+..+.. ...+ +
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~ 110 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER 110 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHH
Confidence 89999999999999999999999988543 1222221111111000000 0000 0
Q ss_pred h--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecC
Q 026207 81 A--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHG 138 (241)
Q Consensus 81 ~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~ 138 (241)
+ .+-..+|+||+||+++++++.++|+++++|||++.+|+.... ...+++.|+++++|.
T Consensus 111 a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd 190 (248)
T COG1116 111 AKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190 (248)
T ss_pred HHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 0 112346789999999999999999999999999999994322 345678999999999
Q ss_pred CChhhhhcCCccccccccccEEEe
Q 026207 139 EWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 139 ~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+ +.-.+ +|+|++
T Consensus 191 i~--------EAv~L---sdRivv 203 (248)
T COG1116 191 VD--------EAVYL---ADRVVV 203 (248)
T ss_pred HH--------HHHhh---hCEEEE
Confidence 97 44456 888887
No 14
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.77 E-value=1.6e-18 Score=152.01 Aligned_cols=149 Identities=19% Similarity=0.175 Sum_probs=97.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~ 60 (241)
|++++|+..-.- -..++..+ .+..| ++.|.||||||||||++.|++.+.++.|. ++.|
T Consensus 7 ~i~i~~l~k~~~--~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 7 PIDFRNVEKRYG--DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred eEEEEeEEEEEC--CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 456666653211 01233332 33344 89999999999999999999999887442 2344
Q ss_pred EcCCcccCCCCCCccc------ccc--------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 61 VDTSNEIGGDGDIPHS------AIG--------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 61 i~~~~e~~~~~~~~~~------~~~--------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
+.+...+.....+... ..+ . ...+..+|.+++++..+++++.++|+++|+||
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE 164 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE 164 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 4322211110000000 000 0 01223456788999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|++++|+.... +.++.|.++|.++|..+ .++.+ ||+|++
T Consensus 165 Pt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~--------e~~~~---~d~i~i 210 (306)
T PRK13537 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFME--------EAERL---CDRLCV 210 (306)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH--------HHHHh---CCEEEE
Confidence 99999995432 44456899999999997 67777 898887
No 15
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.76 E-value=2.3e-18 Score=152.89 Aligned_cols=139 Identities=20% Similarity=0.240 Sum_probs=93.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCccc------ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPHS------AIG----- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~~------~~~----- 79 (241)
++.|+||||||||||++.|++.++++.|. .+.|+.+...+.....+... ..+
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 148 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTRE 148 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 89999999999999999999999877442 23344322211110000000 000
Q ss_pred ---c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEe
Q 026207 80 ---T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGT 135 (241)
Q Consensus 80 ---~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t 135 (241)
. ...+..+|.|++++..+++++.++|+++|+|||++++|+.... +..+.|.+++++
T Consensus 149 ~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilis 228 (340)
T PRK13536 149 IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228 (340)
T ss_pred HHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 0112335678899999999999999999999999999995433 334468999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
+|..+ .++++ ||+|++ .++.....+..++++
T Consensus 229 SH~l~--------e~~~~---~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 229 THFME--------EAERL---CDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred CCCHH--------HHHHh---CCEEEEEECCEEEEEcCHHHHH
Confidence 99997 67777 899887 444333334444443
No 16
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.75 E-value=7.9e-19 Score=160.91 Aligned_cols=185 Identities=25% Similarity=0.390 Sum_probs=135.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC------CCcccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP------EPSLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l 101 (241)
+++|.|+||+|||||+.+++...... +.+++|++ .+|.. .+...++.++... ........+++.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs-~Ees~------~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVS-GEESA------SQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-ccccH------HHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 79999999999999999999987644 67999998 55542 2222222233221 11234566667777
Q ss_pred hcCCcEEEEcCCCCHHhH------------H-----HHHHHHhCCcEEEEeecCCChhhhhcCC-ccccccccccEEEe-
Q 026207 102 NHMPEVIIVDEIGTEAEA------------H-----ACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIGGVDTVTL- 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~------------~-----~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~~~d~V~~- 162 (241)
..+|+++|+|++++.... . ....+++.|++++.+.|.++ ++.+++| .++++ +|.|++
T Consensus 154 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk-~~~~ag~~~lehl---vD~Vi~l 229 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTK-EGAIAGPRVLEHM---VDTVLYF 229 (446)
T ss_pred hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccC-CCCcCCcchhhhh---CeEEEEE
Confidence 789999999999865421 1 12246778999999999987 6667777 68999 999998
Q ss_pred -CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE---------Eeec----chHHHHHHhcCCCcc-ceeeeccCC
Q 026207 163 -GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW---------VTHK----TEKSVDMLLRGKTPL-VEIRKRDDR 225 (241)
Q Consensus 163 -~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~---------~~~~----~~~~~~~~l~G~~~~-~e~~~~~~~ 225 (241)
++..... |.++.+|+|+++++....|+|+++|+- +.+. .++++.+.++|.+|+ .|+|+....
T Consensus 230 e~~~~~~~-R~l~i~K~R~g~~~e~~~f~it~~Gi~~v~~ps~~~~~~~~~~~~g~~~~~~~~G~~~~~veVea~v~~ 306 (446)
T PRK11823 230 EGDRHSRY-RILRAVKNRFGATNEIGVFEMTEQGLREVSNPSELFLSERDENVPGSAVTVTMEGTRPLLVEIQALVSP 306 (446)
T ss_pred EcCCCCce-EEEEEccCCCCCCCceEEEEEcCCCceECCCHHHHHhcCCCCCCCceEEEEEEEcccceEEEEEEeecC
Confidence 4333333 889999999999998899999999983 3321 256778889999998 499998543
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=1.8e-17 Score=137.38 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=99.7
Q ss_pred EEEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-----------
Q 026207 11 IVKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----------- 70 (241)
Q Consensus 11 ~~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~----------- 70 (241)
.+|.++.-|+...+..+ ++.|.||+|||||||++.+.+++.|+.|. +.++ +.++..-
T Consensus 10 ~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~Ge--I~i~-G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 10 EVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE--ILID-GEDIPQLSEEELYEIRKR 86 (263)
T ss_pred EEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCe--EEEc-CcchhccCHHHHHHHHhh
Confidence 34444555555444443 79999999999999999999999999654 3333 2221100
Q ss_pred -CCCccc-----------c--------------------------ccc----h-hhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 71 -GDIPHS-----------A--------------------------IGT----A-RRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 71 -~~~~~~-----------~--------------------------~~~----~-~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
+...++ + .|. + ..-..+|++|+.|+++++|+..+|++
T Consensus 87 ~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPel 166 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPEL 166 (263)
T ss_pred eeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCE
Confidence 000000 0 000 0 01123567899999999999999999
Q ss_pred EEEcCCCCHHhHHHH-------HHHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhh
Q 026207 108 IIVDEIGTEAEAHAC-------RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSI 176 (241)
Q Consensus 108 lilDE~~~~~d~~~~-------~~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~ 176 (241)
+++|||++++||-.. .... .-|.|+++++|..+ .+..+ ||+|.+ .++.....++.+++
T Consensus 167 l~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~--------s~~~i---~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 167 LFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD--------SLLTI---ADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH--------HHHhh---hceEEEEeCCEEEEeCCHHHH
Confidence 999999999999332 2222 34889999999997 67777 899887 55544333444444
No 18
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.72 E-value=3.1e-17 Score=131.12 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=86.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCC--CccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD--IPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
+++|.||||||||||++.+++..++..|. ++++ +..+..... ......++. ..+|++++++..+++++..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~--v~~~-g~~~~~~~~~~~~~~~i~~~---~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGE--ILVD-GKEVSFASPRDARRAGIAMV---YQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEEC-CEECCcCCHHHHHhcCeEEE---EecCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999887554 5555 333321100 001112221 117889999999999999999
Q ss_pred cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 106 EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++++|||++++|+.... +..+.|.++++++|... .+..+ +|+++.
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--------~~~~~---~d~~~~ 154 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD--------EVFEI---ADRVTV 154 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999999999985432 33445889999999986 45555 777765
No 19
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.1e-17 Score=140.89 Aligned_cols=126 Identities=21% Similarity=0.286 Sum_probs=88.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC---------CC-CCCccc-------------------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---------GD-GDIPHS-------------------AI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~---------~~-~~~~~~-------------------~~ 78 (241)
.++|+||||||||||++.+++.+.|..|. ++++ +.... .. +.+.+. +.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl~p~~G~--v~~~-g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~ 108 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGE--VLVD-GLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL 108 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcCcCCCCE--EEEC-CeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc
Confidence 89999999999999999999999988544 3443 11110 00 000000 00
Q ss_pred c------------------c----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-
Q 026207 79 G------------------T----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER- 128 (241)
Q Consensus 79 ~------------------~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~- 128 (241)
+ . -+....+|++++|+++++.++.++|+++++|||++++|+.... +....
T Consensus 109 g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~ 188 (235)
T COG1122 109 GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEG 188 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 0 0 0123346788999999999999999999999999999995443 33334
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHH
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEA 167 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~ 167 (241)
|.++|.++|..+ .+... ||+++. .++..
T Consensus 189 ~~tii~~tHd~~--------~~~~~---ad~v~vl~~G~i 217 (235)
T COG1122 189 GKTIIIVTHDLE--------LVLEY---ADRVVVLDDGKI 217 (235)
T ss_pred CCeEEEEeCcHH--------HHHhh---CCEEEEEECCEE
Confidence 689999999997 55556 888887 44443
No 20
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.72 E-value=2e-17 Score=142.07 Aligned_cols=157 Identities=31% Similarity=0.478 Sum_probs=113.5
Q ss_pred ccceeeEEEEEeEEeeCcce------e---eccEEEEEeCCCchHHHHHHHHHHhccccCC------CeEEEEcCCcccC
Q 026207 4 LRNVFLLIVKFFYALYSINK------I---IFDFFLSYFRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIG 68 (241)
Q Consensus 4 ~~~~~~~~~r~~~~~~~~~~------~---~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g------~~v~~i~~~~e~~ 68 (241)
+++.+++.+|..+..++..+ . ....++|.||||||||||++.+++.+++..| .++..+++..|+.
T Consensus 80 IR~~s~~~~r~~~~~~~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~ 159 (270)
T TIGR02858 80 IKNVSSLNIRIAREKLGAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIA 159 (270)
T ss_pred EEcccccEEEeccccCCcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHH
Confidence 55666666776554443221 0 1137899999999999999999999988743 3444444344443
Q ss_pred CC-CCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 69 GD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 69 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
.. ...++...+ .+..+.+...+...++..+..++|+++++|||+...+...+..+.++|+++++|+|..++.++..+
T Consensus 160 ~~~~~~~q~~~~--~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r 237 (270)
T TIGR02858 160 GCVNGVPQHDVG--IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVEDLYKR 237 (270)
T ss_pred HHhccccccccc--ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHHHHHhC
Confidence 22 334444443 355666666677778888888999999999999988777776766789999999999998888899
Q ss_pred Ccccccccc--ccEEEe
Q 026207 148 PILSDLIGG--VDTVTL 162 (241)
Q Consensus 148 p~l~~l~~~--~d~V~~ 162 (241)
|.+..++.. +|++++
T Consensus 238 ~~~~~l~~~~~~~r~i~ 254 (270)
T TIGR02858 238 PVFKELIENEAFERYVV 254 (270)
T ss_pred hHHHHHHhcCceEEEEE
Confidence 988777652 788877
No 21
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.72 E-value=3e-17 Score=143.74 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=95.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~ 60 (241)
|++++|+..-.- -..++... .+..| +++|+||||||||||++.|++.+++..|. ++.|
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 4 AIDLVGVSKSYG--DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred EEEEEeEEEEeC--CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 567777752110 11234433 23333 89999999999999999999998776432 2334
Q ss_pred EcCCcccCCCCCCcccc------cc--------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 61 VDTSNEIGGDGDIPHSA------IG--------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 61 i~~~~e~~~~~~~~~~~------~~--------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
+.+...+.....+.... .+ . ......+|+|++++..+++++.++|+++++||
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE 161 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 33221111100000000 00 0 01123356688999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|++++|+.... .....|.++|+++|... .+..+ ||++++
T Consensus 162 Pt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~--------~~~~~---~d~i~~ 207 (303)
T TIGR01288 162 PTTGLDPHARHLIWERLRSLLARGKTILLTTHFME--------EAERL---CDRLCV 207 (303)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH--------HHHHh---CCEEEE
Confidence 99999995432 33446899999999986 56666 788776
No 22
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=3.5e-17 Score=139.47 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=97.2
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
..+.|+||++||+||||||++.++...+.......+++++|+.|+.... ......|-++......+..++.++++
T Consensus 122 ~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~s-----kkslI~QREvG~dT~sF~~aLraALR 196 (353)
T COG2805 122 ESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHES-----KKSLINQREVGRDTLSFANALRAALR 196 (353)
T ss_pred hCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcc-----hHhhhhHHHhcccHHHHHHHHHHHhh
Confidence 4667899999999999999999999999988778999999999874321 11111122333446688899999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhh
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
++||+|++.|.++.+....+..|+++||.|++|.|-+++...+
T Consensus 197 eDPDVIlvGEmRD~ETi~~ALtAAETGHLV~~TLHT~sA~~ti 239 (353)
T COG2805 197 EDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTNSAAKTI 239 (353)
T ss_pred cCCCEEEEeccccHHHHHHHHHHHhcCCEEEEecccccHHHHH
Confidence 9999999999999999999999999999999999999855544
No 23
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.71 E-value=4.5e-17 Score=132.38 Aligned_cols=142 Identities=16% Similarity=0.162 Sum_probs=95.3
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------- 69 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-------- 69 (241)
||+++|+.. ++ ++... .+..| .++|+||||||||||++.+++..++..|. ++++ +..+..
T Consensus 4 ~l~~~~l~~---~~---~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~ 74 (182)
T cd03215 4 VLEVRGLSV---KG---AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE--ITLD-GKPVTRRSPRDAIR 74 (182)
T ss_pred EEEEeccEE---Ee---eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEEC-CEECCccCHHHHHh
Confidence 577788753 22 44433 23333 89999999999999999999999887554 4444 211110
Q ss_pred -C-CCCcccc-----c---cchhhcC---CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCC
Q 026207 70 -D-GDIPHSA-----I---GTARRMQ---VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERG 129 (241)
Q Consensus 70 -~-~~~~~~~-----~---~~~~~~~---~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g 129 (241)
. ...++.. . .....+. .+|.+++++..+++++..+|+++++|||++++|+.... ...+.|
T Consensus 75 ~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 154 (182)
T cd03215 75 AGIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG 154 (182)
T ss_pred CCeEEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCC
Confidence 0 1111110 0 0000111 17788999999999999999999999999999995432 334458
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ ||+++.
T Consensus 155 ~tiii~sh~~~--------~~~~~---~d~v~~ 176 (182)
T cd03215 155 KAVLLISSELD--------ELLGL---CDRILV 176 (182)
T ss_pred CEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 89999999876 55666 788765
No 24
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.71 E-value=4.5e-17 Score=135.70 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=94.7
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-.-...+.++...+ +.. .++.|+||||||||||++.+++.+++..|.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 78888886221000012444332 333 389999999999999999999998876442
Q ss_pred eEEEEcCCcccCCCCCCccc-cc-----c--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 57 RVVIVDTSNEIGGDGDIPHS-AI-----G--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 57 ~v~~i~~~~e~~~~~~~~~~-~~-----~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
.+.|+.+...+.....+... .. + . . .....+|++++++..+++++..+|+++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 12222211111100000000 00 0 0 0 012235667899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... +.++.|.++|+++|..+ .+..+ ||+++.
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~--------~~~~~---~d~i~~ 210 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN--------LVETY---RHRTLT 210 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999999995432 33445889999999886 55556 788776
No 25
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.70 E-value=8.1e-17 Score=133.95 Aligned_cols=148 Identities=19% Similarity=0.195 Sum_probs=94.7
Q ss_pred CccccceeeEEEEEe--EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc-------------
Q 026207 1 MLRLRNVFLLIVKFF--YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD------------- 62 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~--~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~------------- 62 (241)
|++++|+.+..-... ..++... .+..| ++.|.||+||||||||+.+.+...|+.|. +++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~--v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE--VLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce--EEECCEEcCcCCHHHHH
Confidence 677888864221111 1223222 23333 89999999999999999999999987543 3332
Q ss_pred -----------CCcccCCCCCCccc------------------------cccch-----hhcCCCCCcccHHHHHHHHHh
Q 026207 63 -----------TSNEIGGDGDIPHS------------------------AIGTA-----RRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 63 -----------~~~e~~~~~~~~~~------------------------~~~~~-----~~~~~~~~~~~~~~~~~~~l~ 102 (241)
+...+.....+... .++.. .....+|+|++||+++++|+.
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 11111100000000 00000 012346778899999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------H-HHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------S-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~-~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+|++|+.|||++.+|.+... . ..+.|.++|+++|... +... ||+++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~---------lA~~---~dr~i~ 214 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE---------LAKY---ADRVIE 214 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH---------HHHh---CCEEEE
Confidence 999999999999999995432 2 3455899999999885 4445 888876
No 26
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.8e-17 Score=135.82 Aligned_cols=139 Identities=18% Similarity=0.214 Sum_probs=91.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD------- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~------- 70 (241)
||+++|+.+...-- ...+..+ .+..| ++.|+||+|||||||+++++++..+..|. +.+. +.++...
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~--i~~~-g~~i~~~~~k~lr~ 78 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE--ILFN-GVQITKLKGKELRK 78 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcce--EEec-ccchhccchHHHHH
Confidence 67888886322111 1111111 23333 89999999999999999999999887553 3333 2111100
Q ss_pred -----CC-------Cccc-------------------cccch----------------------hhcCCCCCcccHHHHH
Q 026207 71 -----GD-------IPHS-------------------AIGTA----------------------RRMQVPEPSLQHKVMI 97 (241)
Q Consensus 71 -----~~-------~~~~-------------------~~~~~----------------------~~~~~~~~~~~~~~~~ 97 (241)
+. ++.. .++.+ .+...+|++.+||+.+
T Consensus 79 ~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 79 LRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHH
Confidence 00 0000 00000 1344578889999999
Q ss_pred HHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhh
Q 026207 98 EAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~ 143 (241)
++++.++|++|+-|||.+.+|+.... .+.+.|.|++++.|..+..-
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~ 212 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAK 212 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHH
Confidence 99999999999999999999995443 34567999999999998433
No 27
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.70 E-value=2.2e-16 Score=130.14 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=87.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
+|+++|+||+||||||+++++++.+.+..+.++++++++.|...... .....+..+......+...++.+++++|
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~-----~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESK-----RSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCc-----cceeeecccCCCccCHHHHHHHHhcCCc
Confidence 48999999999999999999999987554568888987777532211 0111122222234567788999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhh
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+++++||+++......+.++..+|+.+++|+|+.+..+.+
T Consensus 76 d~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~~~ 115 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAKTI 115 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHHHHH
Confidence 9999999998887777778888999999999999855443
No 28
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.69 E-value=6.8e-17 Score=130.29 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=77.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccccc--cchhhcCCCCCcccHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHSAI--GTARRMQVPEPSLQHKVM 96 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~~~--~~~~~~~~~~~~~~~~~~ 96 (241)
+++|.||||||||||++.|++..++..|. ++++ +.++.. . ...++... .....-..+|++++++..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGR--VRLD-GADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCe--EEEC-CEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 89999999999999999999999887554 4444 322210 0 01111100 000011126789999999
Q ss_pred HHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 97 IEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 97 ~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+++++..+|+++++|||++++|+.... ...+.|.++++++|...
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 999999999999999999999995432 33445889999999875
No 29
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.69 E-value=1.4e-16 Score=139.37 Aligned_cols=123 Identities=19% Similarity=0.196 Sum_probs=85.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCccc------ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPHS------AIG----- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~~------~~~----- 79 (241)
+++|.||||||||||++.+++.++++.|. ++.|+.+...+.....+... ..+
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 109 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQL 109 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHH
Confidence 89999999999999999999998877542 13333322111110000000 000
Q ss_pred ---ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEe
Q 026207 80 ---TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGT 135 (241)
Q Consensus 80 ---~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t 135 (241)
.+ .....+|.|++++..+++++.++|+++++|||++++|+.... .. ..+.+++.+
T Consensus 110 ~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~ 188 (301)
T TIGR03522 110 LKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILS 188 (301)
T ss_pred HHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCEEEEE
Confidence 00 112335678899999999999999999999999999995433 33 347899999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|..+ .++++ ||+|++
T Consensus 189 sH~l~--------~~~~~---~d~i~~ 204 (301)
T TIGR03522 189 THIMQ--------EVEAI---CDRVII 204 (301)
T ss_pred cCCHH--------HHHHh---CCEEEE
Confidence 99997 67777 888877
No 30
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=3.3e-17 Score=137.96 Aligned_cols=155 Identities=20% Similarity=0.186 Sum_probs=109.4
Q ss_pred eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-------C-C-----------CCccc-c----
Q 026207 23 KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------D-G-----------DIPHS-A---- 77 (241)
Q Consensus 23 ~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-------~-~-----------~~~~~-~---- 77 (241)
+++.| ++++.||||+||||+++.+.|.+.|..|. +.+. +..... . + ..|.. .
T Consensus 46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~--v~V~-G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~ 122 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGK--VRVN-GKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVL 122 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCe--EEec-CcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHH
Confidence 34555 79999999999999999999999988554 2222 111000 0 0 00000 0
Q ss_pred --------------ccc-----------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------H
Q 026207 78 --------------IGT-----------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------S 124 (241)
Q Consensus 78 --------------~~~-----------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~ 124 (241)
.+. ..++..+|.|.+.+.-+++++.|+|++++||||+-++|..+.. .
T Consensus 123 ~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 123 KLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred HHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 000 0123345667799999999999999999999999999984322 2
Q ss_pred HHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEE
Q 026207 125 IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMR 192 (241)
Q Consensus 125 ~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~ 192 (241)
....++||+.|+|..+ .++.+ ||+|++ ..++..+++.+.+++.+||+-.. ..+++.
T Consensus 203 n~~~~aTVllTTH~~~--------di~~l---c~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~-~~~el~ 259 (325)
T COG4586 203 NEERQATVLLTTHIFD--------DIATL---CDRVLLIDQGQLVFDGTLAQLQEQFGPYKE-FSVELK 259 (325)
T ss_pred HHhhCceEEEEecchh--------hHHHh---hhheEEeeCCcEeecccHHHHHHHhCCceE-EEEEEc
Confidence 3456899999999998 78888 999998 77777778999999999987642 334554
No 31
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.69 E-value=8.5e-17 Score=130.24 Aligned_cols=111 Identities=16% Similarity=0.050 Sum_probs=84.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.++.|.||||||||||++.+++.++++.|. +.++ +..+ +...+...+|.+++++..+++++..+|+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~-g~~i-----------~~~~q~~~LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDN--DEWD-GITP-----------VYKPQYIDLSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcE--EEEC-CEEE-----------EEEcccCCCCHHHHHHHHHHHHHhcCCC
Confidence 389999999999999999999999887554 4444 2221 1111111278899999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... +.... +.++++++|... .+..+ ||+++.
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~--------~~~~~---~d~i~~ 144 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA--------VLDYL---SDRIHV 144 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 99999999999985432 33344 489999999886 55556 777766
No 32
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=99.69 E-value=2.8e-16 Score=134.99 Aligned_cols=114 Identities=24% Similarity=0.265 Sum_probs=93.7
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC-CcccHHHHHHHHHh
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE-PSLQHKVMIEAVEN 102 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 102 (241)
...|+++|+||+||||||++++++..+.+. +.++++++++.|+...+. .+..+.. .+..+...+..+++
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~~~-~~~iitiEdp~E~~~~~~---------~q~~v~~~~~~~~~~~l~~~lR 147 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELNTP-EKNIITVEDPVEYQIPGI---------NQVQVNEKAGLTFARGLRAILR 147 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhCCC-CCeEEEECCCceecCCCc---------eEEEeCCcCCcCHHHHHHHHhc
Confidence 345799999999999999999998888643 578999998988753321 1223222 25688999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+++++|+++...+..+.+++++|+.+++|+|+++..+++.+
T Consensus 148 ~~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~~~~ai~R 192 (264)
T cd01129 148 QDPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTNDAPGAITR 192 (264)
T ss_pred cCCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHHHHH
Confidence 999999999999999888888999999999999999998887754
No 33
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.7e-16 Score=129.34 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=96.9
Q ss_pred CccccceeeEEEEEeEEeeCcce---eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC------cccCCC-
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK---IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS------NEIGGD- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~---~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~------~e~~~~- 70 (241)
|++.+|++ +..--+.+++.++ .+..+..|+||||+|||||++.++|.+.++.|. +.+.... .++...
T Consensus 1 mi~a~nls--~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~-v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 1 MIRAENLS--YSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGE-VTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred CeeeeeeE--EEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCe-EeeCCcChhhCCHHHHHHHh
Confidence 88899986 2333344555544 233489999999999999999999999988443 2221100 000000
Q ss_pred ---------------------CCCcccc--------------------ccc-hhhcCCCCCcccHHHHHHHHHhc-----
Q 026207 71 ---------------------GDIPHSA--------------------IGT-ARRMQVPEPSLQHKVMIEAVENH----- 103 (241)
Q Consensus 71 ---------------------~~~~~~~--------------------~~~-~~~~~~~~~~~~~~~~~~~~l~~----- 103 (241)
+..|+.. .+. .+.+..+|++.+|++.+++.+.+
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence 0011100 000 02345578888999999998865
Q ss_pred -CCcEEEEcCCCCHHhHH-------HHHHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 104 -MPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 104 -~p~vlilDE~~~~~d~~-------~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++.++++|||++.+|.. .+++....|..|+.+.|..++...+ ||+|++
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~Y-----------aDrivl 213 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQY-----------ADRIVL 213 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHh-----------hheeee
Confidence 33599999999999983 3345556788899999999955544 888887
No 34
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.68 E-value=2e-16 Score=131.87 Aligned_cols=148 Identities=22% Similarity=0.185 Sum_probs=94.4
Q ss_pred CccccceeeEEEEEeE-----EeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------
Q 026207 1 MLRLRNVFLLIVKFFY-----ALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~-----~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------- 56 (241)
|++++|+.. ++-. .++... .+..| +++|.||||||||||++.|++.+++..|.
T Consensus 1 ~l~~~~v~~---~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 1 MITADALTK---RFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEAR 77 (218)
T ss_pred CeEEEEEEE---ecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHH
Confidence 788888852 2211 244443 23333 89999999999999999999998876443
Q ss_pred -eEEEEcCCcccCCCCCCccc------ccc--------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 57 -RVVIVDTSNEIGGDGDIPHS------AIG--------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 57 -~v~~i~~~~e~~~~~~~~~~------~~~--------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.+.|+.+...+.....+... ..+ . .. ....+|++++++..+++++..+|++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 12222221111110000000 000 0 00 1223566789999999999999999
Q ss_pred EEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|||++++|+.... ...+.|.++|+++|... .+..+ +|+++.
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~--------~~~~~---~d~i~~ 208 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ--------EVERL---CDRVVV 208 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 9999999999995432 33446889999999886 45555 787766
No 35
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.68 E-value=6.1e-17 Score=141.73 Aligned_cols=128 Identities=23% Similarity=0.258 Sum_probs=86.9
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCccc------ccc
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPHS------AIG 79 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~~------~~~ 79 (241)
+..| +++|+||||||||||+++|++.++++.|. ++.|+.+...+.....+... ..+
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 95 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYG 95 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 3344 89999999999999999999999877443 12233211111100000000 000
Q ss_pred --------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 80 --------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 80 --------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
. . .....+|+|++++..+++++.++|+++++|||++++|+.... ...+.|.
T Consensus 96 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ 175 (302)
T TIGR01188 96 LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175 (302)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 0 0 112336678899999999999999999999999999995432 3345689
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .++.+ ||+|++
T Consensus 176 tvi~~sH~~~--------~~~~~---~d~v~~ 196 (302)
T TIGR01188 176 TILLTTHYME--------EADKL---CDRIAI 196 (302)
T ss_pred EEEEECCCHH--------HHHHh---CCEEEE
Confidence 9999999986 66667 888877
No 36
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.68 E-value=1.6e-16 Score=132.04 Aligned_cols=150 Identities=19% Similarity=0.187 Sum_probs=94.5
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-.- .-..++... .+..| +++|+||||||||||++.+++.+++..|.
T Consensus 1 ~l~~~~l~~~~~-~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 1 MIEFHNVSKAYP-GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred CEEEEeeeEEeC-CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 788888853210 002234433 23333 89999999999999999999998776443
Q ss_pred eEEEEcCCcccCCCCCCccc-cc-----c--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 57 RVVIVDTSNEIGGDGDIPHS-AI-----G--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 57 ~v~~i~~~~e~~~~~~~~~~-~~-----~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
.+.|+.+...+.....+... .. + . . .....+|++++++..+++++..+|+++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 12222211111100000000 00 0 0 0 011235667899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... ...+.|.+++.++|... .+..+ ||++++
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~--------~~~~~---~d~i~~ 209 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS--------LVDRV---AHRVII 209 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 999999999995432 33446889999999886 55666 788765
No 37
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=3.9e-16 Score=125.88 Aligned_cols=121 Identities=21% Similarity=0.287 Sum_probs=83.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-------C-CCCcccc--cc--chhhcCCCCCcccHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------D-GDIPHSA--IG--TARRMQVPEPSLQHKV 95 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-------~-~~~~~~~--~~--~~~~~~~~~~~~~~~~ 95 (241)
+++|.||||||||||++.+++..++..|. +.++ +.++.. . ...++.. .. .....-.+|++++++.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv 104 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGE--IKVL-GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRL 104 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeE--EEEC-CEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHH
Confidence 89999999999999999999998877553 3444 222110 0 1111110 00 0000001677899999
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 96 MIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 96 ~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+++++..+|+++++|||++++|+.... ...+.|.++++++|... .+.++ +|+++.
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~--------~~~~~---~d~i~~ 167 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE--------EAERL---CDRVAI 167 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH--------HHHHh---CCEEEE
Confidence 9999999999999999999999995432 33445789999999876 45555 777765
No 38
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.1e-16 Score=140.43 Aligned_cols=121 Identities=20% Similarity=0.260 Sum_probs=84.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------------CCCCccc----cccch--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------------DGDIPHS----AIGTA-------- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------------~~~~~~~----~~~~~-------- 81 (241)
++.|.||+||||||||++|||+..++.|. ++++ +..... ....||. ++.+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~--I~i~-g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k 107 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGE--ILID-GRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK 107 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCce--EEEC-CEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence 89999999999999999999999988654 4444 221111 0111221 00000
Q ss_pred ---------------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H-HHhCCcEE
Q 026207 82 ---------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S-IAERGVML 132 (241)
Q Consensus 82 ---------------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~-~~~~g~~v 132 (241)
+....+|++++|++++++++..+|+++++|||.+.+|+.... . -.+.|.|+
T Consensus 108 ~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~ 187 (338)
T COG3839 108 AEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTT 187 (338)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 122346778999999999999999999999999999995332 2 23458899
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|.-. +..-| +|+|.+
T Consensus 188 IYVTHDq~--------EAmtl---adri~V 206 (338)
T COG3839 188 IYVTHDQV--------EAMTL---ADRIVV 206 (338)
T ss_pred EEEcCCHH--------HHHhh---CCEEEE
Confidence 99999885 34445 677666
No 39
>PRK10436 hypothetical protein; Provisional
Probab=99.68 E-value=3.5e-16 Score=143.52 Aligned_cols=114 Identities=22% Similarity=0.259 Sum_probs=96.3
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC-cccHHHHHHHHHh
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP-SLQHKVMIEAVEN 102 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 102 (241)
.+.|+++++||+||||||++.+++..+... +.++++++++.|+...+. .|.++... +..+...+..+++
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~-~~~i~TiEDPvE~~l~gi---------~Q~~v~~~~g~~f~~~lr~~LR 285 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNTA-QINICSVEDPVEIPLAGI---------NQTQIHPKAGLTFQRVLRALLR 285 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCCC-CCEEEEecCCccccCCCc---------ceEeeCCccCcCHHHHHHHHhc
Confidence 567899999999999999999988887644 578999999999854321 23344433 6789999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+|+++|+++.+.+..+.+++.+||.+++|+|++++.+++.+
T Consensus 286 ~dPDvI~vGEIRD~eta~~al~AA~TGHlVlsTlHa~~a~~ai~R 330 (462)
T PRK10436 286 QDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSETLVR 330 (462)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHcCCcEEEeeccCChHHHHHH
Confidence 999999999999999998888999999999999999998887754
No 40
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.68 E-value=1.2e-16 Score=144.59 Aligned_cols=149 Identities=16% Similarity=0.207 Sum_probs=94.3
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
||+++|+..-.- -+.++...+ +..| ++.|+||||||||||++.|++.+++..|. ++.
T Consensus 3 ~L~~~nls~~y~--~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFG--DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 577777752110 112333322 2223 89999999999999999999999876442 233
Q ss_pred EEcCCcccCCC---------CCCccc-ccc--------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 60 IVDTSNEIGGD---------GDIPHS-AIG--------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 60 ~i~~~~e~~~~---------~~~~~~-~~~--------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
++.+...+... ...++. ... .. +....+|+|++|+..+++++.++|++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i 160 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 33322111100 000000 000 00 11233567889999999999999999
Q ss_pred EEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|||++++|+.... ...+.|.++|+++|..+ .+.++ ||++++
T Consensus 161 LLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~--------~~~~~---adrii~ 211 (402)
T PRK09536 161 LLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD--------LAARY---CDELVL 211 (402)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 9999999999994322 33346889999999987 55566 788776
No 41
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.2e-16 Score=142.21 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=94.9
Q ss_pred CccccceeeEEE--EEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIV--KFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~--r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-.- ..-..++... .+..| +++|+||||||||||++.+++.+++..|.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 788888863211 0001233332 23333 89999999999999999999999877442
Q ss_pred --eEEEEcCCcccCCCCCCccc------ccc--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 --RVVIVDTSNEIGGDGDIPHS------AIG--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 --~v~~i~~~~e~~~~~~~~~~------~~~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.|+.+...+.....+... ..+ . . .....+|+|++++..+++++.++|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 12333221111100000000 000 0 0 0122356688999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... ... +.|.++|+++|..+ .+..+ ||+|++
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~--------~i~~~---~d~v~~ 213 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD--------VVKRI---CDRVAV 213 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999995432 332 34899999999986 55566 777766
No 42
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=5.1e-16 Score=125.74 Aligned_cols=121 Identities=18% Similarity=0.283 Sum_probs=84.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC----------C-CCCcccc-c----cchhhcCC-CCCc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----------D-GDIPHSA-I----GTARRMQV-PEPS 90 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~----------~-~~~~~~~-~----~~~~~~~~-~~~~ 90 (241)
++.|.||||||||||++.+++.+++..|. ++++ +.++.. . ...++.. . .....+.. +|.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G 104 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEPDSGS--ILID-GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGG 104 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceE--EEEC-CEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHH
Confidence 89999999999999999999999877554 4443 221110 0 0111110 0 00011122 7789
Q ss_pred ccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 91 LQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 91 ~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++..+++++..+|+++++|||++++|+.... ...+. |.++++++|... .+.++ ||++++
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 173 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD--------EAARL---ADRVVV 173 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 999999999999999999999999999995432 33344 789999999876 45556 787765
No 43
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=99.67 E-value=5.8e-16 Score=137.80 Aligned_cols=118 Identities=17% Similarity=0.215 Sum_probs=91.1
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
...|+++|+||+||||||+++++++.+.+..+.++++++++.|....... ....+.++......+...++.++++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~-----~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKR-----SLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCcc-----ceEEccccCCCCcCHHHHHHHhhcc
Confidence 34679999999999999999999998875445789999988776422110 0001122222345788889999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhc
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIK 146 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~ 146 (241)
+||+|++||+++......+..+.++|+.+++|+|+++..+.+.
T Consensus 195 ~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~~~~~~~ 237 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAAQTIE 237 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCCHHHHHH
Confidence 9999999999988877777788899999999999999776654
No 44
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.5e-16 Score=141.87 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=83.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcccccc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHSAIG------------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~~~~------------ 79 (241)
++.|.||||||||||+++|+|..+++.|. ++.++.+...+.....+. .++.
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~-eNi~~~l~~~~~~~~~ 112 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG-ENVGYGLKMLGVPKEE 112 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH-HHHHHHHhHcCCCHHH
Confidence 89999999999999999999999887543 222332211111100000 0000
Q ss_pred ---c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEE
Q 026207 80 ---T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIG 134 (241)
Q Consensus 80 ---~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~ 134 (241)
. -+....+|++++|++++++++..+|+++++|||.+.+|+.... .. .+.|.++|.
T Consensus 113 ~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 192 (351)
T PRK11432 113 RKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY 192 (351)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0 0112335668899999999999999999999999999995432 22 234899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|..+ .+..+ +|+|++
T Consensus 193 vTHd~~--------e~~~l---aD~i~v 209 (351)
T PRK11432 193 VTHDQS--------EAFAV---SDTVIV 209 (351)
T ss_pred EcCCHH--------HHHHh---CCEEEE
Confidence 999986 45555 777776
No 45
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=4e-16 Score=133.43 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=94.8
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCC
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTS 64 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~ 64 (241)
||+++|+..-.- -+.++...+ +..| +++|+||||||||||++.|++.+++..|. ++.|+.+.
T Consensus 1 ml~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 1 MLQISHLYADYG--GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred CEEEEEEEEEeC--CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 788888863210 012344332 3333 89999999999999999999998876443 12233222
Q ss_pred cccCCCCCCccc-c-----cc--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCH
Q 026207 65 NEIGGDGDIPHS-A-----IG--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 65 ~e~~~~~~~~~~-~-----~~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~ 116 (241)
..+.....+... . .+ . . .....+|+|++++..+++++..+|+++++|||+++
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~ 158 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA 158 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 111110000000 0 00 0 0 01223566789999999999999999999999999
Q ss_pred HhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 117 AEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 117 ~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+.... .. ...|.++|+++|..+ .+..+ ||+|+.
T Consensus 159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~--------~~~~~---~d~i~~ 201 (255)
T PRK11248 159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIE--------EAVFM---ATELVL 201 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9995432 32 335889999999886 55666 788776
No 46
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.67 E-value=3.8e-16 Score=137.79 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=92.4
Q ss_pred EEEeEEeeCcce--------eecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-------------
Q 026207 12 VKFFYALYSINK--------IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG------------- 69 (241)
Q Consensus 12 ~r~~~~~~~~~~--------~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~------------- 69 (241)
++.+++.|+... +..| ++.|.||+||||||+|++|||...|+.|. ++++ +..+..
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~--I~l~-G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGE--ILLD-GEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEEC-CEECCCCChhhcccceeec
Confidence 344455565433 3343 78999999999999999999999998654 4443 222211
Q ss_pred -CCCCcccccc----c------------------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCC
Q 026207 70 -DGDIPHSAIG----T------------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 114 (241)
Q Consensus 70 -~~~~~~~~~~----~------------------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~ 114 (241)
....||.... + .++...+|++++|++++++++..+|+++++|||.
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 0011221000 0 0122335778899999999999999999999999
Q ss_pred CHHhHHHHH--------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 115 TEAEAHACR--------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 115 ~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.+|..... ...+.|+|.|.++|.-. +...| +|+|.+
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe--------EAl~m---sDrI~V 209 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQE--------EALAM---SDRIAV 209 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH--------HHhhh---ccceEE
Confidence 999994322 23456999999999885 44445 777776
No 47
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.6e-16 Score=136.97 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=94.3
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~ 57 (241)
||+++|+..-.- -+.++... .+..| +++|.||||||||||++.|++.+++..|. .
T Consensus 1 ml~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 1 MLATSDLWFRYQ--DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred CeEEEEEEEEcC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 888888863211 01234433 23344 89999999999999999999999877442 1
Q ss_pred EEEEcCCccc-CCCCCCcc------cccc------------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 58 VVIVDTSNEI-GGDGDIPH------SAIG------------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 58 v~~i~~~~e~-~~~~~~~~------~~~~------------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.|+.+.... .....+.. ...+ .. .....+|+|++++..+++++..+|+++
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 2222211100 00000000 0000 00 012235667899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||+++.
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~--------~~~~~---~d~i~~ 208 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID--------LIYEI---SDAVYV 208 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999999995432 33445889999999886 45555 787776
No 48
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.67 E-value=1.4e-16 Score=132.47 Aligned_cols=151 Identities=20% Similarity=0.242 Sum_probs=100.5
Q ss_pred EEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccc------
Q 026207 12 VKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHS------ 76 (241)
Q Consensus 12 ~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~------ 76 (241)
++.+...|+.....++ ++.|+||||+||||+++.+.+.++|+.|. +++. +.++.... +++
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~--v~~~-G~~it~l~--p~~iar~Gi 81 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGT--VIFR-GRDITGLP--PHRIARLGI 81 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCce--EEEC-CcccCCCC--HHHHHhccc
Confidence 4444566777665555 79999999999999999999999999554 3333 32222110 000
Q ss_pred -------------------cccc--------------h---------------hhc----------CCCCCcccHHHHHH
Q 026207 77 -------------------AIGT--------------A---------------RRM----------QVPEPSLQHKVMIE 98 (241)
Q Consensus 77 -------------------~~~~--------------~---------------~~~----------~~~~~~~~~~~~~~ 98 (241)
..+. + .++ ..++.+.+.+.-++
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 0000 0 001 11233446677899
Q ss_pred HHHhcCCcEEEEcCCCCHHhHHHH-------HHHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHH
Q 026207 99 AVENHMPEVIIVDEIGTEAEAHAC-------RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARA 169 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~ 169 (241)
+++..+|++|+||||.+++.+... +...+ .|.+++..-|.++ .+..+ ||+|+. ..++..+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~--------~Vm~l---~dri~Vl~~G~~IA 230 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK--------LVMGL---ADRIVVLNYGEVIA 230 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH--------HHhhh---ccEEEeccCCcCcc
Confidence 999999999999999999877433 24444 5799999999998 77788 999998 4444444
Q ss_pred HHHHHhhhc
Q 026207 170 RRCQKSILE 178 (241)
Q Consensus 170 ~~~~~~~k~ 178 (241)
++.+.++.+
T Consensus 231 eG~P~eV~~ 239 (250)
T COG0411 231 EGTPEEVRN 239 (250)
T ss_pred cCCHHHHhc
Confidence 466666654
No 49
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.66 E-value=6.4e-16 Score=123.32 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=101.3
Q ss_pred CccccceeeEEEEEeEEeeCcce------eecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK------IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~------~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--- 70 (241)
|++|.+|. ..|+... ++.| ++.|.||+|+|||||++.++|...|..|. +.+. +.+....
T Consensus 1 ~l~L~~V~--------~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~--i~i~-g~d~t~~~P~ 69 (231)
T COG3840 1 MLALDDVR--------FSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE--ILIN-GVDHTASPPA 69 (231)
T ss_pred CccccceE--------EeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCce--EEEc-CeecCcCCcc
Confidence 77888884 2344433 2223 89999999999999999999999988554 3333 1111100
Q ss_pred -----------CCCcc----cccc----------------------------chhh-cCCCCCcccHHHHHHHHHhcCCc
Q 026207 71 -----------GDIPH----SAIG----------------------------TARR-MQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 71 -----------~~~~~----~~~~----------------------------~~~~-~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
....| ++++ ...| -..+|++.+|++++++++..+-.
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 00000 0000 0011 23467788999999999988888
Q ss_pred EEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 107 VIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
++++|||++.+|+.... .+.+++.|+++++|..+ .+.++ +|++++ .++...+.+....+.
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~--------Da~~i---a~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE--------DAARI---ADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH--------HHHHh---hhceEEEeCCEEEeeccHHHHh
Confidence 99999999999994322 35567899999999886 56666 788777 444443334444444
Q ss_pred cc
Q 026207 178 ER 179 (241)
Q Consensus 178 ~r 179 (241)
++
T Consensus 219 ~~ 220 (231)
T COG3840 219 SG 220 (231)
T ss_pred cc
Confidence 43
No 50
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.66 E-value=3.4e-16 Score=127.01 Aligned_cols=121 Identities=17% Similarity=0.292 Sum_probs=85.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCcc--ccccc----hhhcCCCCCccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPH--SAIGT----ARRMQVPEPSLQ 92 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~--~~~~~----~~~~~~~~~~~~ 92 (241)
+++|.||||||||||++.+++..+++.|. ++++ +..+... ...++ ...+. ......+|.+++
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~~G~--v~~~-g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGE--ILLD-GKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEEC-CEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 89999999999999999999999888554 4555 3322110 00000 00000 012344677899
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 93 HKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 93 ~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++..+++++..+|+++++|||++++|+.... ..++. |.++|.++|..+ .+.++ +|+++.
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~--------~~~~~---~d~~~~ 170 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN--------LAARY---ADRVIL 170 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999999999999999999999985432 33333 789999999986 55566 787776
No 51
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.66 E-value=1.8e-16 Score=141.51 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=93.4
Q ss_pred CccccceeeEEEEEeEEeeCcc--eee-ccEEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KII-FDFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIV 61 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~-~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i 61 (241)
||+++|+..-.-. ..++... .+. ..++.|.||||||||||+++|+|..+++.|. ++.|+
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 5677777532110 1123322 232 3389999999999999999999999887443 12233
Q ss_pred cCCcccCCCCCCcccccc---------------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 62 DTSNEIGGDGDIPHSAIG---------------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 62 ~~~~e~~~~~~~~~~~~~---------------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
.+...+.....+. .++. . . +....+|++++|++++++++..+|+++++||
T Consensus 82 ~Q~~~lfp~~tv~-eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDE 160 (353)
T TIGR03265 82 FQSYALFPNLTVA-DNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDE 160 (353)
T ss_pred eCCcccCCCCcHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 2221111100000 0000 0 0 1122356678999999999999999999999
Q ss_pred CCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.+.+|+.... .. .+.|.++|.++|..+ .+..+ +|+|++
T Consensus 161 P~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~--------ea~~l---~d~i~v 207 (353)
T TIGR03265 161 PLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE--------EALSM---ADRIVV 207 (353)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--------HHHHh---CCEEEE
Confidence 99999984332 22 234899999999986 55566 787776
No 52
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=99.66 E-value=7.7e-16 Score=137.68 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=92.9
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
..|+++++||+||||||++++++..+... +..++++++++.|+..... .. .....+.++......+...+..++++
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~--~~-~~~~~q~evg~~~~~~~~~l~~aLR~ 224 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSP--DD-LLPPAQSQIGRDVDSFANGIRLALRR 224 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCC--ce-eecccccccCCCccCHHHHHHHhhcc
Confidence 45689999999999999999999988532 2368999999988754321 00 11011223322334678899999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
+||+|+++|+++..+...+..+.++||.+++|+|++++.+++.|
T Consensus 225 ~PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~s~~~ai~R 268 (372)
T TIGR02525 225 APKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISR 268 (372)
T ss_pred CCCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCCCHHHHHHH
Confidence 99999999999998888888899999999999999998887754
No 53
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.6e-16 Score=140.60 Aligned_cols=149 Identities=15% Similarity=0.108 Sum_probs=93.6
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIV 61 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i 61 (241)
||+++|+..-... -..++... .+..| ++.|.||||||||||+++|+|..+++.|. ++.|+
T Consensus 3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4677777532100 01233332 23333 89999999999999999999999887443 12333
Q ss_pred cCCcccCCCCCCcccccc---------------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 62 DTSNEIGGDGDIPHSAIG---------------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 62 ~~~~e~~~~~~~~~~~~~---------------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
.+...+.....+. .++. . . +....+|+|++|++++++++..+|+++++||
T Consensus 82 ~Q~~~lfp~~tv~-eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDE 160 (356)
T PRK11650 82 FQNYALYPHMSVR-ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE 160 (356)
T ss_pred eCCccccCCCCHH-HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2221111100000 0000 0 0 0123356788999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|++.+|+.... ... +.|.++|.++|... .+..+ +|+|++
T Consensus 161 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~--------ea~~l---~D~i~v 207 (356)
T PRK11650 161 PLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV--------EAMTL---ADRVVV 207 (356)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999984332 333 34899999999886 45556 777776
No 54
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.66 E-value=8.3e-16 Score=120.49 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=81.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
+++|.||||+|||||++.+++..++..|. ++++ +. ..+++..+ +|.+++++..+++++..+|++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~-~~----------~~i~~~~~---lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGI--VTWG-ST----------VKIGYFEQ---LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceE--EEEC-Ce----------EEEEEEcc---CCHHHHHHHHHHHHHhcCCCE
Confidence 89999999999999999999999887554 5555 21 01111111 778999999999999999999
Q ss_pred EEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|||.+++|+.... .....+.++++++|..+ .+..+ +|+++.
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~--------~~~~~---~d~v~~ 139 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRY--------FLDQV---ATKIIE 139 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 9999999999985443 22233678999999876 44455 677664
No 55
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.66 E-value=1.1e-15 Score=122.56 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=78.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (241)
+++|.||||||||||++.+++.+++..|. ++.|+.+...+. ... ....+.. .....+|++++++..++++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~-~~t-v~~nl~~-~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP-LGT-LREQLIY-PWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc-ccc-HHHHhhc-cCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999887553 334444222111 000 0011100 0235578899999999999
Q ss_pred HhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 101 ENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
+..+|+++++|||++++|+.... ...+.+.++|+++|...
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~ 149 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPS 149 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChh
Confidence 99999999999999999995543 12233688999999975
No 56
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=99.66 E-value=6.2e-16 Score=143.02 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=95.0
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC-cccHHHHHHHHHh
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP-SLQHKVMIEAVEN 102 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 102 (241)
...|+++++||+||||||++++++..+.+. +.++++++++.|+...+. .+.++... +..+...+..+++
T Consensus 240 ~~~GlilitGptGSGKTTtL~a~L~~l~~~-~~~iiTiEDpvE~~~~~~---------~q~~v~~~~g~~f~~~lr~~LR 309 (486)
T TIGR02533 240 RPHGIILVTGPTGSGKTTTLYAALSRLNTP-ERNILTVEDPVEYQIEGI---------GQIQVNPKIGLTFAAGLRAILR 309 (486)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHhccCCC-CCcEEEEcCCeeeecCCC---------ceEEEccccCccHHHHHHHHHh
Confidence 356799999999999999999988888644 578999999988754321 12333332 6789999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+|+++|+++.+.+..+.+++.+||.+++|+|++++.+++.+
T Consensus 310 ~dPDvI~vGEiRd~eta~~a~~aa~tGHlvlsTlHa~sa~~ai~R 354 (486)
T TIGR02533 310 QDPDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTR 354 (486)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHH
Confidence 999999999999999888888999999999999999998887764
No 57
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.66 E-value=7.4e-16 Score=136.91 Aligned_cols=151 Identities=13% Similarity=0.161 Sum_probs=95.8
Q ss_pred CccccceeeEEEE--EeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIVK--FFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r--~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-.-. ....++..++ +..| ++.|+||||||||||+++|++..+++.|.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 8889999632210 0012344433 3333 89999999999999999999999887443
Q ss_pred --eEEEEcCCcccCCCCCC------cccccc--c----------hh----------hcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 --RVVIVDTSNEIGGDGDI------PHSAIG--T----------AR----------RMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 --~v~~i~~~~e~~~~~~~------~~~~~~--~----------~~----------~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.++.+...+.....+ +....+ . .. ....+|+|++|++.+++++..+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 12222211111100000 000000 0 00 112356678999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++.+|+.... ...+ .|.++++++|..+ .+..+ ||+|++
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~--------~v~~~---~d~v~v 213 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD--------VVKRI---CDCVAV 213 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999995432 3333 4899999999987 56666 788776
No 58
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.9e-16 Score=134.24 Aligned_cols=147 Identities=21% Similarity=0.234 Sum_probs=94.4
Q ss_pred CccccceeeEEEEEeEEeeCc--ceeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC-----cccCCC--
Q 026207 1 MLRLRNVFLLIVKFFYALYSI--NKIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-----NEIGGD-- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~--~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~-----~e~~~~-- 70 (241)
|+++.|+.+..-++.. +.. .++..| ++.+.||+||||||||+.|||+..|+.|. +.+... ......
T Consensus 2 ~i~i~~~~~~~~~~~a--~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~--I~~~~~~l~D~~~~~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAFGA--LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR--IRLNGRVLFDVSNLAVRDR 77 (345)
T ss_pred ceeehhhhhhcccccc--cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCce--EEECCEeccchhccchhhc
Confidence 5667777543322221 111 233333 89999999999999999999999988554 333211 010000
Q ss_pred --CCC-------ccc----cc--cc----------------------------h-hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 71 --GDI-------PHS----AI--GT----------------------------A-RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 71 --~~~-------~~~----~~--~~----------------------------~-~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+++ +|. ++ |. + +...-+|++++|++++++++...|+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 000 000 00 00 0 0112356778999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++||||.+.+|+.... +.. +.|++.++++|... +...+ +|+|+.
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e--------ea~~l---adrvvv 210 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE--------EALEL---ADRVVV 210 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH--------HHHhh---cceEEE
Confidence 99999999999995432 332 34999999999886 55666 888887
No 59
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.66 E-value=5.4e-16 Score=128.88 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=88.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-------------------CCCccccccc--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-------------------GDIPHSAIGT-------- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~-------------------~~~~~~~~~~-------- 80 (241)
.+.|.|++|||||||++.+++..++..|. ++++ +.+.... ...|.+..+.
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G~--I~~~-G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPSSGS--ILLD-GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCce--EEEC-CcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 79999999999999999999999988554 4444 2211110 0011110000
Q ss_pred ------------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhC
Q 026207 81 ------------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAER 128 (241)
Q Consensus 81 ------------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~ 128 (241)
.++-..+|+|..||.++++|+..+|++||+|||++.+|..... ..++.
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 0122336778899999999999999999999999999994322 23456
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++++.+|... .++++ ||+|.+
T Consensus 192 ~lt~l~IsHdl~--------~v~~~---cdRi~V 214 (252)
T COG1124 192 GLTYLFISHDLA--------LVEHM---CDRIAV 214 (252)
T ss_pred CceEEEEeCcHH--------HHHHH---hhheee
Confidence 889999999998 78899 999887
No 60
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.66 E-value=5.6e-16 Score=128.14 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=83.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------eEEEEcCCcc--cCCCC------C----Ccc--ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------RVVIVDTSNE--IGGDG------D----IPH--SAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------~v~~i~~~~e--~~~~~------~----~~~--~~~ 78 (241)
+++|.||||||||||++.+++..+++.|. ++.|+.+... +.... . ... ...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 107 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA 107 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHH
Confidence 89999999999999999999998877442 2333332210 10000 0 000 000
Q ss_pred cc-h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 79 GT-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 79 ~~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|...
T Consensus 108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 108 ETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred HHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 00 0 012235678899999999999999999999999999995432 33456889999999886
Q ss_pred hhhhhcCCccccccccccEEEe
Q 026207 141 LENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 141 ~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+++.
T Consensus 188 --------~~~~~---~d~i~~ 198 (205)
T cd03226 188 --------FLAKV---CDRVLL 198 (205)
T ss_pred --------HHHHh---CCEEEE
Confidence 45556 788765
No 61
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.65 E-value=4.5e-16 Score=124.89 Aligned_cols=144 Identities=22% Similarity=0.203 Sum_probs=92.5
Q ss_pred CccccceeeEEEEEeEEeeCc--ceeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc---------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSI--NKIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------- 62 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~--~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~--------------- 62 (241)
|++++||.+-...- ...+.. ..+..| ++.++||+|||||||++.|.+...++.|. +.+.
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~--i~~~~~dl~~l~~~~iP~L 77 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK--ILVNGHDLSRLKGREIPFL 77 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCce--EEECCeecccccccccchh
Confidence 89999997422222 111111 123344 79999999999999999999999888443 2222
Q ss_pred --------CCcccCCCC------CCccccccc---------------------hhh-cCCCCCcccHHHHHHHHHhcCCc
Q 026207 63 --------TSNEIGGDG------DIPHSAIGT---------------------ARR-MQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 63 --------~~~e~~~~~------~~~~~~~~~---------------------~~~-~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+...+..+. ..+....|. +.. -..+|++.+|++.++++..++|+
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 111110000 000000110 001 12356788999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcC
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
+++-|||+..+|+.... +....|.||++.+|...+-+.+..
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 99999999999995443 455679999999999875554433
No 62
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3e-16 Score=140.94 Aligned_cols=148 Identities=20% Similarity=0.144 Sum_probs=92.9
Q ss_pred ccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEc
Q 026207 2 LRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVD 62 (241)
Q Consensus 2 ~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~ 62 (241)
|+++|+..-.- -..++... .+..| ++.|+||||||||||++.|++..+++.|. ++.|+.
T Consensus 4 l~i~~l~~~~~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 4 VTLRNVTKAYG--DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 66777752110 11233333 23333 89999999999999999999999877442 133333
Q ss_pred CCcccCCCCCCcc-------------cc-----------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCC
Q 026207 63 TSNEIGGDGDIPH-------------SA-----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 114 (241)
Q Consensus 63 ~~~e~~~~~~~~~-------------~~-----------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~ 114 (241)
+...+.....+.. .. ++. .+....+|++++|+..+++++..+|+++++|||+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2211111000000 00 000 0112335678899999999999999999999999
Q ss_pred CHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 115 TEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 115 ~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|+.... ... +.|.++|.++|..+ .+..+ ||+|++
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~--------~~~~~---~d~i~v 206 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV--------EAMTL---ADKIVV 206 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999995432 333 34899999999886 45555 777766
No 63
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.1e-16 Score=134.30 Aligned_cols=148 Identities=20% Similarity=0.224 Sum_probs=99.3
Q ss_pred CccccceeeEEEEE---eEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC----
Q 026207 1 MLRLRNVFLLIVKF---FYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~---~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---- 70 (241)
|++|++|.+..-.- ....+..+ .+..| ++.|+|.+|+|||||+|++.++-.|+.|. +.++ +.++...
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~--v~v~-G~di~~l~~~~ 77 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGS--VFVD-GQDLTALSEAE 77 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCce--EEEc-CEecccCChHH
Confidence 88999996321110 00112222 23344 89999999999999999999999888665 4454 3222110
Q ss_pred --------CCCccc------------------cccc---------------------h-hhcCCCCCcccHHHHHHHHHh
Q 026207 71 --------GDIPHS------------------AIGT---------------------A-RRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 71 --------~~~~~~------------------~~~~---------------------~-~~~~~~~~~~~~~~~~~~~l~ 102 (241)
+.+.++ ..+. + .+...+|+|++|++.+++|+.
T Consensus 78 Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 78 LRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence 000000 0000 0 012235778899999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------H-HHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------S-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~-~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+|++++.||+++.+||+... . ..+.|.|++..+|.++ +++.+ ||+|.+
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~--------Vvk~i---c~rVav 214 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME--------VVKRI---CDRVAV 214 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH--------HHHHH---hhhheE
Confidence 999999999999999996443 2 2346999999999998 77888 888887
No 64
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2.2e-16 Score=137.33 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=95.3
Q ss_pred CccccceeeEEEEEe---EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------
Q 026207 1 MLRLRNVFLLIVKFF---YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------ 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~---~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------ 56 (241)
|++++|+..-.-... ..++..+ .+..| +++|.||||||||||++.|++.+.++.|.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 788999863221000 0133332 23333 89999999999999999999999877442
Q ss_pred ----eEEEEcCCc--ccCCCC------C------Ccccc--------c---cc-----hhhcCCCCCcccHHHHHHHHHh
Q 026207 57 ----RVVIVDTSN--EIGGDG------D------IPHSA--------I---GT-----ARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 57 ----~v~~i~~~~--e~~~~~------~------~~~~~--------~---~~-----~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
++.|+.+.. .+.... . .+... + +. ......+|++++++..+++++.
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 122332211 010000 0 00000 0 00 0011224567899999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++++|||++++|+.... ..++.|.++++++|..+ .+..+ ||+|++
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~--------~~~~~---~dri~~ 216 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD--------DVADY---ADYVYL 216 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 999999999999999995432 33446899999999986 45556 888877
No 65
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=99.65 E-value=9.5e-16 Score=136.76 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=93.0
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhcccc--CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDE--FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~--~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
..|+++|+||+||||||+++++++.+.+. .+.++++++++.|+...... ...+...+..+......+...+..+++
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~--~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIE--TISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccc--cccceeeeeeccccccCHHHHHHHHhc
Confidence 55799999999999999999999988543 24689999988886433210 001111222332234578888899999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+++++|+++...+..+..++.+||.+++|+|++++.+++.+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~R 255 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRR 255 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHH
Confidence 999999999999998888888899999999999999998777653
No 66
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.65 E-value=5.7e-16 Score=138.63 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=83.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC--CC----------------eEEEEcCCcccCCCCCCcccccc----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF--QK----------------RVVIVDTSNEIGGDGDIPHSAIG---------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~--g~----------------~v~~i~~~~e~~~~~~~~~~~~~---------- 79 (241)
++.|+||||||||||+++|++..+++. |. ++.++.+...+.....+ ..++.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv-~enl~~~l~~~~~~~ 111 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV-EDNVAFGLRAQKMPK 111 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH-HHHHHHHHHHcCCCH
Confidence 899999999999999999999998875 43 12222211111100000 00000
Q ss_pred -----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC--CcE
Q 026207 80 -----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER--GVM 131 (241)
Q Consensus 80 -----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~--g~~ 131 (241)
. . +....+|++++|++++++++..+|+++++|||++++|+.... ...+. |.+
T Consensus 112 ~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~t 191 (362)
T TIGR03258 112 ADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191 (362)
T ss_pred HHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 0 0 112235667899999999999999999999999999995432 33333 789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+..+ +|+|++
T Consensus 192 il~vTHd~~--------ea~~l---~dri~v 211 (362)
T TIGR03258 192 ILCVTHDQD--------DALTL---ADKAGI 211 (362)
T ss_pred EEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999986 55556 777776
No 67
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1e-15 Score=128.88 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=93.9
Q ss_pred CccccceeeEEEEEeE-----EeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------
Q 026207 1 MLRLRNVFLLIVKFFY-----ALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~-----~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------- 56 (241)
||+++|+.. ++-. .++...+ +..| +++|+||||||||||++.|++.+++..|.
T Consensus 1 ~i~~~~l~~---~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 1 MIELKNVSK---VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred CeEEecceE---EccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHH
Confidence 788888863 2211 2444432 3333 89999999999999999999999877443
Q ss_pred -----eEEEEcCCcccCCCCCCccc-cc-----c--------c----hh----------hcCCCCCcccHHHHHHHHHhc
Q 026207 57 -----RVVIVDTSNEIGGDGDIPHS-AI-----G--------T----AR----------RMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 57 -----~v~~i~~~~e~~~~~~~~~~-~~-----~--------~----~~----------~~~~~~~~~~~~~~~~~~l~~ 103 (241)
.+.|+.+...+.....+... .. + . .. ....+|.|++++..+++++..
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 12222211111100000000 00 0 0 00 112246678999999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 104 MPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++++|||++++|+.... ...+ .|.++|+++|..+ .+..+ ||++++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~--------~~~~~---~d~i~~ 213 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME--------VVKRI---CDRVAV 213 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999999995432 3333 4899999999876 55566 788776
No 68
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1e-15 Score=127.16 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=83.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCC-------------cccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDI-------------PHSA- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~-------------~~~~- 77 (241)
+++|+||||||||||++.+++.+++..|. ++.|+.+.........+ ....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 107 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEI 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHH
Confidence 89999999999999999999998876442 12333321111100000 0000
Q ss_pred ---cc-ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEe
Q 026207 78 ---IG-TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGT 135 (241)
Q Consensus 78 ---~~-~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t 135 (241)
.. .. .....+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.++|++
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 187 (213)
T cd03259 108 RARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV 187 (213)
T ss_pred HHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 00 00 012235668899999999999999999999999999995432 3223 48899999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ ||+|+.
T Consensus 188 sH~~~--------~~~~~---~d~v~~ 203 (213)
T cd03259 188 THDQE--------EALAL---ADRIAV 203 (213)
T ss_pred ecCHH--------HHHHh---cCEEEE
Confidence 99886 55566 788776
No 69
>PRK10908 cell division protein FtsE; Provisional
Probab=99.65 E-value=1.2e-15 Score=127.66 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=94.6
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-.-. -..++...+ +.. .+++|+||||||||||++.|++..+++.|.
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 1 MIRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7888888632200 122344332 223 389999999999999999999999876442
Q ss_pred eEEEEcCCcccCCCCCC------c-------ccc----c-cch----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 57 RVVIVDTSNEIGGDGDI------P-------HSA----I-GTA----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 57 ~v~~i~~~~e~~~~~~~------~-------~~~----~-~~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
.+.|+.+.........+ . ... . ... .....+|.+++++..+++++..+|+++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 12233221111000000 0 000 0 000 012235667899999999999999999
Q ss_pred EEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+... ....+.|.++++++|..+ .+..+ ||+|+.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 209 (222)
T PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG--------LISRR---SYRMLT 209 (222)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999532 233445889999999886 55666 788776
No 70
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.7e-16 Score=136.94 Aligned_cols=65 Identities=11% Similarity=0.216 Sum_probs=53.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+ .+.++ ||+
T Consensus 166 LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~--------~~~~~---adr 234 (305)
T PRK13651 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD--------NVLEW---TKR 234 (305)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH--------HHHHh---CCE
Confidence 4567799999999999999999999999999995432 33456899999999986 45556 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 235 v~v 237 (305)
T PRK13651 235 TIF 237 (305)
T ss_pred EEE
Confidence 877
No 71
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.8e-15 Score=124.04 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=74.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc--ccCCCeEEEEcCCccc----CCC-CCCcc-----------ccccchhhcCCCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS--DEFQKRVVIVDTSNEI----GGD-GDIPH-----------SAIGTARRMQVPEP 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~--~~~g~~v~~i~~~~e~----~~~-~~~~~-----------~~~~~~~~~~~~~~ 89 (241)
+++|+||||||||||++.+++... +..|. ++++ +..+ ... ...++ ..+........+|+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~--i~~~-g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSg 111 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGE--ILIN-GRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSV 111 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceE--EEEC-CEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCH
Confidence 899999999999999999999753 34332 3333 2111 000 00011 11111011125788
Q ss_pred cccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 90 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 90 ~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+++++..+++++..+|+++++|||++++|+.... ...+.|.++++++|..+
T Consensus 112 Ge~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 112 EQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 9999999999999999999999999999995432 33445889999999975
No 72
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.64 E-value=6.6e-16 Score=127.47 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=87.3
Q ss_pred CccccceeeEEEEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCC---------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------- 56 (241)
||+++|+ ..-|+...+.+| ++.++|+||+|||||+++|++.+++..|.
T Consensus 3 mL~v~~l--------~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENL--------SAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeE--------eecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHH
Confidence 6666666 456666666665 69999999999999999999999876332
Q ss_pred ----eEEEEcCCcccCCCCCC---------c-----------cccccchh--------hcCCCCCcccHHHHHHHHHhcC
Q 026207 57 ----RVVIVDTSNEIGGDGDI---------P-----------HSAIGTAR--------RMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 57 ----~v~~i~~~~e~~~~~~~---------~-----------~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
-+.|+.++.++...-.+ . ......++ +-..+|++.+|..++++++..+
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 12344433333211000 0 00000111 2244677889999999999999
Q ss_pred CcEEEEcCCCCHHhHHHH-------HHHH-hCCcEEEEeecCCC
Q 026207 105 PEVIIVDEIGTEAEAHAC-------RSIA-ERGVMLIGTAHGEW 140 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~-------~~~~-~~g~~vi~t~H~~~ 140 (241)
|++++||||..++.|..+ ...+ +.|.+|+.+-+.-.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 999999999999988433 3444 34778877655544
No 73
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.64 E-value=1.1e-15 Score=130.11 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=93.9
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-.- -+.++...+ +..| +++|+||||||||||++.|++.++++.|.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFH--GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 578888852211 113444432 3333 89999999999999999999998766442
Q ss_pred -----eEEEEcCCcccCCCCCCcccc------c-c--------ch--------------hhcCCCCCcccHHHHHHHHHh
Q 026207 57 -----RVVIVDTSNEIGGDGDIPHSA------I-G--------TA--------------RRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 57 -----~v~~i~~~~e~~~~~~~~~~~------~-~--------~~--------------~~~~~~~~~~~~~~~~~~~l~ 102 (241)
.+.|+.+...+.....+.... . + .+ .....+|++++++..+++++.
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh
Confidence 122222111111000000000 0 0 00 011235667899999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+|+++++|||++++|+.... ...+.|.++|+++|... .+..+ ||+++.
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~--------~~~~~---~d~i~~ 216 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS--------FARDV---ADRAIF 216 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 999999999999999995432 33445889999999886 55566 788776
No 74
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.64 E-value=1.4e-15 Score=126.81 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=81.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCcc------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPH------SAIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~------~~~~ 79 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+.........+.. ...+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 111 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG 111 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC
Confidence 89999999999999999999999876432 1233322111110000000 0000
Q ss_pred --------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CC
Q 026207 80 --------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RG 129 (241)
Q Consensus 80 --------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g 129 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... .... .|
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~ 191 (218)
T cd03255 112 VPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG 191 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 0 0 012235667899999999999999999999999999995432 3333 58
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+. + ||+++.
T Consensus 192 ~tii~~sH~~~--------~~~-~---~d~v~~ 212 (218)
T cd03255 192 TTIVVVTHDPE--------LAE-Y---ADRIIE 212 (218)
T ss_pred CeEEEEECCHH--------HHh-h---hcEEEE
Confidence 89999999886 343 5 788776
No 75
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=7.3e-16 Score=131.51 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=52.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+.... ..++ .|.++|+++|... .+.++ ||
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~--------~~~~~---~d 222 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK--------LVMGI---SD 222 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--------HHHHh---CC
Confidence 5667899999999999999999999999999995432 3333 3899999999886 55566 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 223 ~i~~ 226 (255)
T PRK11300 223 RIYV 226 (255)
T ss_pred EEEE
Confidence 8776
No 76
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=2e-15 Score=126.20 Aligned_cols=125 Identities=21% Similarity=0.235 Sum_probs=83.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCcc------cccc----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPH------SAIG---- 79 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~------~~~~---- 79 (241)
.+++|+||||||||||++.|+|.+++..|. ++.|+.+...+.....+.. ...+
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~ 106 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA 106 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHH
Confidence 389999999999999999999998776442 1233332211110000000 0000
Q ss_pred ----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEE
Q 026207 80 ----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLI 133 (241)
Q Consensus 80 ----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi 133 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.++|
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi 186 (220)
T cd03265 107 ERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTIL 186 (220)
T ss_pred HHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 0 0 012335678899999999999999999999999999995433 3333 488999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|... .+..+ ||++++
T Consensus 187 ~~tH~~~--------~~~~~---~d~i~~ 204 (220)
T cd03265 187 LTTHYME--------EAEQL---CDRVAI 204 (220)
T ss_pred EEeCCHH--------HHHHh---CCEEEE
Confidence 9999886 55556 788776
No 77
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.64 E-value=7.1e-16 Score=130.26 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=86.7
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~ 60 (241)
||+++|+..-.- -+.++...+ +..| +++|.||||||||||++.|++..++..|. .+.|
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYG--ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred CEEEEeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 678888853211 122444332 3333 89999999999999999999998877442 1223
Q ss_pred EcCCcccCCCCCCccc-c-----cc--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 61 VDTSNEIGGDGDIPHS-A-----IG--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 61 i~~~~e~~~~~~~~~~-~-----~~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
+.+...+.....+... . .+ . . .....+|+|++++..+++++..+|+++++||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 158 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3321111000000000 0 00 0 0 0122356678999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHH-hCCcEEEEeecCCC
Q 026207 113 IGTEAEAHACR-------SIA-ERGVMLIGTAHGEW 140 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~ 140 (241)
|++++|+.... ... +.|.++++++|..+
T Consensus 159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 99999995432 333 35889999999886
No 78
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.4e-16 Score=138.50 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=82.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCcccccc-----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHSAIG----- 79 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~~~~----- 79 (241)
.+++|+||||||||||++.|++..+++.|. ++.|+.+...+.....+ ..++.
T Consensus 25 e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv-~enl~~~~~~ 103 (352)
T PRK11144 25 GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV-RGNLRYGMAK 103 (352)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH-HHHHHhhhhh
Confidence 389999999999999999999998877443 11122111111000000 00000
Q ss_pred ----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEE
Q 026207 80 ----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLI 133 (241)
Q Consensus 80 ----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi 133 (241)
. . .....+|++++|+..+++++..+|+++++|||++++|+.... ...+ .|.++|
T Consensus 104 ~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii 183 (352)
T PRK11144 104 SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183 (352)
T ss_pred hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 0 0 112335667899999999999999999999999999995332 3333 488999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|..+ .+..+ ||++++
T Consensus 184 ~vTHd~~--------~~~~~---~d~i~~ 201 (352)
T PRK11144 184 YVSHSLD--------EILRL---ADRVVV 201 (352)
T ss_pred EEecCHH--------HHHHh---CCEEEE
Confidence 9999886 45556 777666
No 79
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.64 E-value=1.2e-15 Score=130.19 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=93.9
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccCCC
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGD 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~~~ 70 (241)
||+++|+..-.- -+.++... .+..| +++|+||||||||||++.|++.+++..|. .+.|+.+...+...
T Consensus 4 ~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 4 LVSLENVSVSFG--QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred EEEEeceEEEEC--CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 566777752110 01233332 23333 89999999999999999999998877442 34555432211110
Q ss_pred ---C------CCcc---ccccc-h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----
Q 026207 71 ---G------DIPH---SAIGT-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---- 123 (241)
Q Consensus 71 ---~------~~~~---~~~~~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---- 123 (241)
. ..+. ..... . .....+|++++++..+++++..+|+++++|||++++|+....
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 161 (251)
T PRK09544 82 LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161 (251)
T ss_pred cChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 0 0000 00000 0 112335678899999999999999999999999999995432
Q ss_pred ---HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 124 ---SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 124 ---~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.... .|.++|+++|..+ .+..+ ||+|++
T Consensus 162 ~L~~~~~~~g~tiiivsH~~~--------~i~~~---~d~i~~ 193 (251)
T PRK09544 162 LIDQLRRELDCAVLMVSHDLH--------LVMAK---TDEVLC 193 (251)
T ss_pred HHHHHHHhcCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 2233 3889999999986 44555 677665
No 80
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.7e-15 Score=126.51 Aligned_cols=128 Identities=18% Similarity=0.112 Sum_probs=85.2
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCccc------ccc----
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIPHS------AIG---- 79 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~~~------~~~---- 79 (241)
+..| +++|+||||||||||++.|++..++..|. .+.|+.+...+.....+... ..+
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 106 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA 106 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHH
Confidence 3444 89999999999999999999998776442 23344322111110000000 000
Q ss_pred --------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEE
Q 026207 80 --------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLI 133 (241)
Q Consensus 80 --------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi 133 (241)
.. .....+|++++++..+++++..+|+++++|||++++|+.... +. .+.|.++|
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii 186 (220)
T cd03293 107 EARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVL 186 (220)
T ss_pred HHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 00 012335668899999999999999999999999999995432 33 23588999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|... .+..+ ||++++
T Consensus 187 i~sH~~~--------~~~~~---~d~i~~ 204 (220)
T cd03293 187 LVTHDID--------EAVFL---ADRVVV 204 (220)
T ss_pred EEecCHH--------HHHHh---CCEEEE
Confidence 9999886 45556 787775
No 81
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.64 E-value=1.7e-15 Score=124.38 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc--cccCCCeEEEEcCCcccC-----CC-CCCccc-----------cccchhhcCCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL--SDEFQKRVVIVDTSNEIG-----GD-GDIPHS-----------AIGTARRMQVPE 88 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l--~~~~g~~v~~i~~~~e~~-----~~-~~~~~~-----------~~~~~~~~~~~~ 88 (241)
+++|+||||||||||++.+++.. ++..|. ++++ +..+. .. ...++. .+....+...+|
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~--i~~~-g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS 113 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGE--VLIN-GRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLS 113 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceE--EEEC-CEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCC
Confidence 89999999999999999999998 776443 3333 21110 00 001110 000001122577
Q ss_pred CcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 89 PSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 89 ~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
.+++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|... . .+.++ +|+++
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~------~~~~~---~d~v~ 183 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS-S------EIFEL---FDKLL 183 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-H------HHHHh---cCEEE
Confidence 89999999999999999999999999999995432 33445889999999874 1 23445 77776
Q ss_pred e
Q 026207 162 L 162 (241)
Q Consensus 162 ~ 162 (241)
.
T Consensus 184 ~ 184 (194)
T cd03213 184 L 184 (194)
T ss_pred E
Confidence 5
No 82
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=1.3e-15 Score=128.79 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=92.9
Q ss_pred ccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEc
Q 026207 2 LRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVD 62 (241)
Q Consensus 2 ~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~ 62 (241)
|+++|+..-.- -..++...+ +..| +++|.||||||||||++.|++..++..|. .+.|+.
T Consensus 3 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 3 IEVRNVSKRFG--DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEeEEEEEC--CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 77777752211 112344332 2233 89999999999999999999998776432 233443
Q ss_pred CCcccCCCCCC------c----------cc-----cc-cchh----------hcCCCCCcccHHHHHHHHHhcCCcEEEE
Q 026207 63 TSNEIGGDGDI------P----------HS-----AI-GTAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIV 110 (241)
Q Consensus 63 ~~~e~~~~~~~------~----------~~-----~~-~~~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlil 110 (241)
+...+.....+ . .. .. .... ....+|+|++++..+++++..+|+++++
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 160 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22111100000 0 00 00 0000 1223566889999999999999999999
Q ss_pred cCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 111 DEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 111 DE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|||++++|+.... ...+ .|.++|+++|..+ .+..+ ||+++.
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~--------~~~~~---~d~i~~ 209 (239)
T cd03296 161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE--------EALEV---ADRVVV 209 (239)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999995433 3333 4889999999886 45555 788776
No 83
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=99.63 E-value=1.8e-15 Score=142.58 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=95.9
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC-CcccHHHHHHHHHh
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE-PSLQHKVMIEAVEN 102 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 102 (241)
...|+++++||+||||||++.+++..+.+. ..++++++++.|+...+. .+.++.. .+..+...+..+++
T Consensus 314 ~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~tiEdpvE~~~~~~---------~q~~v~~~~g~~~~~~l~~~LR 383 (564)
T TIGR02538 314 KPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNISTAEDPVEINLPGI---------NQVNVNPKIGLTFAAALRSFLR 383 (564)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEEecCCceecCCCc---------eEEEeccccCCCHHHHHHHHhc
Confidence 456799999999999999999999988644 578999999998854321 2333433 26789999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++||+|+++|+++.+.+..+.+++.+||.+++|+|++++.+++.|
T Consensus 384 ~dPDvI~vGEiRd~eta~~a~~aa~tGHlv~tTlHa~~a~~~i~R 428 (564)
T TIGR02538 384 QDPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLAR 428 (564)
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHHHHH
Confidence 999999999999999888888999999999999999998887764
No 84
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.5e-16 Score=126.27 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=95.7
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCC-----
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD----- 72 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~----- 72 (241)
|++++||++..- -+.++... .++.| ++.|+||||+|||||+..++++++.+.|. ++++ +.++.....
T Consensus 1 MI~i~nv~K~y~--~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~--i~i~-g~~~~~~~s~~LAk 75 (252)
T COG4604 1 MITIENVSKSYG--TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE--ITID-GLELTSTPSKELAK 75 (252)
T ss_pred CeeehhhhHhhC--CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCce--EEEe-eeecccCChHHHHH
Confidence 888999963211 11122222 34443 89999999999999999999999988665 6665 333321100
Q ss_pred ---Cc-c-------------ccccch-----------------------------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 73 ---IP-H-------------SAIGTA-----------------------------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 73 ---~~-~-------------~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+. + ..+|++ +.+..+|+|++|++.++..+.++.|
T Consensus 76 ~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 76 KLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred HHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCc
Confidence 00 0 001111 2344577888999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhhhh
Q 026207 107 VIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
.+++|||-+.+|..... .+.+-|++++.+.|..+....+
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y 202 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY 202 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh
Confidence 99999999999984332 3456799999999999855555
No 85
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=5.2e-16 Score=134.27 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=93.7
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
|++++|+..-.-. -..++..+ .+..| +++|+||||||||||++.|++.+++..|. ++.
T Consensus 3 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSG-SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCC-CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 4777777531110 01133332 34444 89999999999999999999998877443 122
Q ss_pred EEcCCcc--cCCCCC-----Cccc--cc----------------cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEE
Q 026207 60 IVDTSNE--IGGDGD-----IPHS--AI----------------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 110 (241)
Q Consensus 60 ~i~~~~e--~~~~~~-----~~~~--~~----------------~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlil 110 (241)
|+.+... +..... .... .. +. ......+|++++++..+++++..+|+++|+
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2221110 000000 0000 00 00 011233566889999999999999999999
Q ss_pred cCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 111 DEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 111 DE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|||++++|+.... .... .|.++++++|..+ .+.++ ||+|++
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~--------~~~~~---~drv~~ 210 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD--------LVPEM---ADYIYV 210 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 9999999984332 3333 3899999999987 55566 888777
No 86
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=128.55 Aligned_cols=149 Identities=12% Similarity=0.060 Sum_probs=93.5
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
|++++|+..-.- -+.++...+ +.. .+++|+||||||||||++.|++..++..|. .+
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYK--GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 567777753210 112343332 323 389999999999999999999998876442 12
Q ss_pred EEEcCCcccCCCCCC------c---cccc------cc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEE
Q 026207 59 VIVDTSNEIGGDGDI------P---HSAI------GT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVII 109 (241)
Q Consensus 59 ~~i~~~~e~~~~~~~------~---~~~~------~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vli 109 (241)
.|+.+...+.....+ . .... .. . .....+|++++++..+++++..+|++++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL 160 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 333221111100000 0 0000 00 0 0122356678999999999999999999
Q ss_pred EcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 110 VDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 110 lDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|||++++|+.... ...+.|.++|+++|... .+.++ ||+++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~--------~~~~~---~d~v~~ 209 (241)
T PRK10895 161 LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR--------ETLAV---CERAYI 209 (241)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH--------HHHHh---cCEEEE
Confidence 99999999985432 33456899999999875 45566 788776
No 87
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.63 E-value=1.5e-15 Score=128.71 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=93.5
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
|++++|+..-.- .-..++...+ +..| +++|+||||||||||++.|++..++..|.
T Consensus 1 ~l~~~~l~~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 1 MLEVENLSKVYP-NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred CeEEEeeeeecC-CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 778888852110 0112344332 3333 89999999999999999999998776442
Q ss_pred eEEEEcCCcccCCCCCC------c----------------cccccc----h----------hhcCCCCCcccHHHHHHHH
Q 026207 57 RVVIVDTSNEIGGDGDI------P----------------HSAIGT----A----------RRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 57 ~v~~i~~~~e~~~~~~~------~----------------~~~~~~----~----------~~~~~~~~~~~~~~~~~~~ 100 (241)
.+.|+.+.........+ . ...... . .....+|+|++++..++++
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 12233211111100000 0 000000 0 0122356678999999999
Q ss_pred HhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 101 ENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+..+|+++++|||++++|+.... ... +.|.++|+++|..+ .+..+ ||++++
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~--------~~~~~---~d~v~~ 218 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD--------LAKKY---ADRIVG 218 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---cCeEEE
Confidence 99999999999999999995432 332 34889999999886 45556 788776
No 88
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=99.63 E-value=2e-15 Score=130.00 Aligned_cols=112 Identities=23% Similarity=0.314 Sum_probs=85.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.++|+||+||||||++++++..+++. ..++++++++.|+....... . .+........+...+..+++++|
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iEd~~E~~l~~~~~--~-----~~~~~~~~~~~~~~l~~~LR~~p 198 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIEDPPELRLPGPNQ--I-----QIQTRRDEISYEDLLKSALRQDP 198 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEESSS-S--SCSSE--E-----EEEEETTTBSHHHHHHHHTTS--
T ss_pred ceEEEEECCCccccchHHHHHhhhcccc-ccceEEeccccceeecccce--E-----EEEeecCcccHHHHHHHHhcCCC
Confidence 5689999999999999999999999876 57999999888886532111 0 11111457889999999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcEE-EEeecCCChhhhhc
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVML-IGTAHGEWLENIIK 146 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~v-i~t~H~~~~~~~~~ 146 (241)
|+++++|+++...... ..+.++|+.+ ++|+|++++.+++.
T Consensus 199 D~iiigEiR~~e~~~~-~~a~~tGh~~~~tT~Ha~s~~~~i~ 239 (270)
T PF00437_consen 199 DVIIIGEIRDPEAAEA-IQAANTGHLGSLTTLHANSAEDAIE 239 (270)
T ss_dssp SEEEESCE-SCHHHHH-HHHHHTT-EEEEEEEE-SSHHHHHH
T ss_pred CcccccccCCHhHHHH-HHhhccCCceeeeeeecCCHHHHHH
Confidence 9999999999987766 7888999998 99999999888775
No 89
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=8.3e-17 Score=130.09 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=103.2
Q ss_pred EEEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC----------C
Q 026207 11 IVKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----------G 71 (241)
Q Consensus 11 ~~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~----------~ 71 (241)
..+.+.+.|+.....++ +|.+.||||+||||...++.|+++++.|+ +.++ ..++... +
T Consensus 6 ~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~--i~ld-~~diT~lPm~~RArlGig 82 (243)
T COG1137 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK--ILLD-DEDITKLPMHKRARLGIG 82 (243)
T ss_pred EehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCce--EEEC-CcccccCChHHHhhcCcc
Confidence 34444555665555444 79999999999999999999999999665 5554 2222110 1
Q ss_pred CCcccccc-------------------------c---------------h--hhcCCCCCcccHHHHHHHHHhcCCcEEE
Q 026207 72 DIPHSAIG-------------------------T---------------A--RRMQVPEPSLQHKVMIEAVENHMPEVII 109 (241)
Q Consensus 72 ~~~~~~~~-------------------------~---------------~--~~~~~~~~~~~~~~~~~~~l~~~p~vli 109 (241)
..|+...- + . ..-..+|++.+.+.-+++++..+|.+++
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiL 162 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFIL 162 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEE
Confidence 12221000 0 0 0012356678999999999999999999
Q ss_pred EcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 110 VDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 110 lDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
||||+++.||-++ ...+.+|+.|+.|-|... +.-.+ ||+..+ .++...+.+.++++.
T Consensus 163 LDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR--------EtL~i---~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 163 LDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR--------ETLDI---CDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred ecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH--------HHHhh---hheEEEEecCeEEecCCHHHHh
Confidence 9999999999433 356778999999999886 45556 888766 454444445555544
No 90
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.4e-15 Score=128.36 Aligned_cols=124 Identities=17% Similarity=0.181 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcccCCCCCCc---------ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNEIGGDGDIP---------HSA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e~~~~~~~~---------~~~ 77 (241)
+++|+||||||||||++.+++.+++..|. .+.|+.+...+.....+. ...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~ 107 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR 107 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccC
Confidence 89999999999999999999999876442 122222111110000000 000
Q ss_pred cc------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CC
Q 026207 78 IG------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RG 129 (241)
Q Consensus 78 ~~------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g 129 (241)
.. . . .....+|+|++++..+++++..+|+++++|||++++|+.... ...+ .|
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 187 (235)
T cd03261 108 LSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG 187 (235)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 00 0 0 011235667899999999999999999999999999995332 3333 48
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ ||+|++
T Consensus 188 ~tvi~vsH~~~--------~~~~~---~d~v~~ 209 (235)
T cd03261 188 LTSIMVTHDLD--------TAFAI---ADRIAV 209 (235)
T ss_pred cEEEEEecCHH--------HHHHh---cCEEEE
Confidence 89999999886 55566 888877
No 91
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.63 E-value=4e-15 Score=123.02 Aligned_cols=138 Identities=20% Similarity=0.145 Sum_probs=86.5
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~ 60 (241)
||+++|+..-.- ...++...+ +..| +++|.||||||||||++.+++.+++..|. ++.+
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 1 MLEARNLACERD--ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred CeEEEEEEEEEC--CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 788888863211 122444432 3333 89999999999999999999999887543 0112
Q ss_pred EcCCcccCCCCCCcc------cccc-----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCC
Q 026207 61 VDTSNEIGGDGDIPH------SAIG-----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 61 i~~~~e~~~~~~~~~------~~~~-----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~ 115 (241)
+.+...+.....+.. ...+ . . .....+|++++++..+++++..+|+++++|||++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 211110000000000 0000 0 0 0122355677999999999999999999999999
Q ss_pred HHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 116 EAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 116 ~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
++|+.... ...+.|.++|+++|..+
T Consensus 159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 99995432 33345889999999876
No 92
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.63 E-value=1.5e-15 Score=125.99 Aligned_cols=124 Identities=22% Similarity=0.280 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc--cCCCCC------------Ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE--IGGDGD------------IPH 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e--~~~~~~------------~~~ 75 (241)
++.|+||||||||||++.|++.+++..|. .+.|+.+... +..... ...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~ 108 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPE 108 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCH
Confidence 89999999999999999999998876443 1223322111 100000 000
Q ss_pred -cccc----ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEE
Q 026207 76 -SAIG----TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLI 133 (241)
Q Consensus 76 -~~~~----~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi 133 (241)
.... .. .....+|+|++++..+++++..+|+++++|||++++|+.... .....|.++|
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi 188 (211)
T cd03225 109 EEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTII 188 (211)
T ss_pred HHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEE
Confidence 0000 00 012335667899999999999999999999999999995432 3334588999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|... .+..+ ||+++.
T Consensus 189 ~~sH~~~--------~~~~~---~d~i~~ 206 (211)
T cd03225 189 IVTHDLD--------LLLEL---ADRVIV 206 (211)
T ss_pred EEeCCHH--------HHHHh---CCEEEE
Confidence 9999876 55566 787765
No 93
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.63 E-value=4.7e-16 Score=161.63 Aligned_cols=144 Identities=16% Similarity=0.122 Sum_probs=101.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCC-------------CCcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDG-------------DIPHSA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~-------------~~~~~~ 77 (241)
++.|.||||||||||+++|+|.++++.|. .+.|+.+...+.... ..+...
T Consensus 1967 i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~ 2046 (2272)
T TIGR01257 1967 CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEE 2046 (2272)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHH
Confidence 89999999999999999999999887543 122332211111000 000000
Q ss_pred -----------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEe
Q 026207 78 -----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGT 135 (241)
Q Consensus 78 -----------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t 135 (241)
.+. -.....+|+|++++..++.++..+|+++++|||++++|+...+ ..++.|+++|.|
T Consensus 2047 ~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILt 2126 (2272)
T TIGR01257 2047 IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT 2126 (2272)
T ss_pred HHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 000 0113346778899999999999999999999999999995443 344568999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCC
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAP 182 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~ 182 (241)
+|..+ .++.+ ||+|++ .++.....+..+++|+++|.
T Consensus 2127 TH~me--------e~e~l---cDrV~IL~~G~i~~~Gs~q~Lk~~~g~ 2163 (2272)
T TIGR01257 2127 SHSME--------ECEAL---CTRLAIMVKGAFQCLGTIQHLKSKFGD 2163 (2272)
T ss_pred eCCHH--------HHHHh---CCEEEEEECCEEEEECCHHHHHHHhCC
Confidence 99997 67777 999988 55554445778888888874
No 94
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.63 E-value=9.3e-16 Score=131.96 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=82.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc--cCCC--------------CCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE--IGGD--------------GDI 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e--~~~~--------------~~~ 73 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+... +... ...
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 120 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDL 120 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCC
Confidence 89999999999999999999999877442 1223322111 0000 000
Q ss_pred cc-c---ccc-chh-----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CC
Q 026207 74 PH-S---AIG-TAR-----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RG 129 (241)
Q Consensus 74 ~~-~---~~~-~~~-----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g 129 (241)
.. . ... .+. ....+|++++++..+++++..+|+++++|||++++|+.... ...+ .|
T Consensus 121 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g 200 (267)
T PRK15112 121 EPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200 (267)
T ss_pred CHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 00 0 000 000 11235667899999999999999999999999999995432 3333 48
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ ||+++.
T Consensus 201 ~tviivsH~~~--------~~~~~---~d~i~~ 222 (267)
T PRK15112 201 ISYIYVTQHLG--------MMKHI---SDQVLV 222 (267)
T ss_pred cEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 89999999886 55556 788776
No 95
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.63 E-value=3.2e-15 Score=128.01 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=84.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCc-------cc-cccc----h-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIP-------HS-AIGT----A- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~-------~~-~~~~----~- 81 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+.....+. .. .... .
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~ 119 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALA 119 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHH
Confidence 89999999999999999999998876442 233443222111100000 00 0000 0
Q ss_pred ---------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhh
Q 026207 82 ---------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 82 ---------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~ 144 (241)
.....+|+|++++..+++++..+|+++++|||++++|+.... .. .+.|.++|+++|...
T Consensus 120 ~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~---- 195 (257)
T PRK11247 120 AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS---- 195 (257)
T ss_pred HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH----
Confidence 012335678899999999999999999999999999995432 32 335889999999986
Q ss_pred hcCCccccccccccEEEe
Q 026207 145 IKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 145 ~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|+.
T Consensus 196 ----~~~~~---~d~i~~ 206 (257)
T PRK11247 196 ----EAVAM---ADRVLL 206 (257)
T ss_pred ----HHHHh---CCEEEE
Confidence 45556 787776
No 96
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=2.2e-15 Score=125.00 Aligned_cols=124 Identities=23% Similarity=0.262 Sum_probs=83.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC--------------eEEEEcCCcccCCCCCCccc------ccc--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------RVVIVDTSNEIGGDGDIPHS------AIG-------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------~v~~i~~~~e~~~~~~~~~~------~~~-------- 79 (241)
+++|+||||||||||++.|++..++..|. .+.|+.+...+.....+... ..+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 107 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR 107 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH
Confidence 89999999999999999999998776442 23344322111110000000 000
Q ss_pred c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecC
Q 026207 80 T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHG 138 (241)
Q Consensus 80 ~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~ 138 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++++++|.
T Consensus 108 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~ 187 (210)
T cd03269 108 RIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187 (210)
T ss_pred HHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 0 0 012235667899999999999999999999999999995332 334458899999998
Q ss_pred CChhhhhcCCccccccccccEEEe
Q 026207 139 EWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 139 ~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.. .+.++ ||+++.
T Consensus 188 ~~--------~~~~~---~d~i~~ 200 (210)
T cd03269 188 ME--------LVEEL---CDRVLL 200 (210)
T ss_pred HH--------HHHHh---hhEEEE
Confidence 76 45556 787766
No 97
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1e-15 Score=132.20 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=93.8
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
|++++|+..-.- ....++..+ .+..| ++.|.||||||||||++.|++.+++..|. ++.
T Consensus 4 ~l~~~~l~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeC-CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 566777752110 001233332 23333 89999999999999999999998876442 123
Q ss_pred EEcCCcc--cCCCC------C------Ccc-c---cc-------cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEE
Q 026207 60 IVDTSNE--IGGDG------D------IPH-S---AI-------GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIV 110 (241)
Q Consensus 60 ~i~~~~e--~~~~~------~------~~~-~---~~-------~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlil 110 (241)
|+.+... +.... . ... . .. +. ......+|++++++..+++++..+|+++++
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3332210 00000 0 000 0 00 00 001233566789999999999999999999
Q ss_pred cCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 111 DEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 111 DE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|||++++|+.... ...+.|.+++.++|..+ .+.+. ||+++.
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~--------~~~~~---~d~i~~ 210 (274)
T PRK13647 163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD--------LAAEW---ADQVIV 210 (274)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999995432 34445899999999986 45556 888776
No 98
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.63 E-value=2.1e-15 Score=129.13 Aligned_cols=149 Identities=19% Similarity=0.202 Sum_probs=93.2
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
||+++|+..-.- -+.++...+ +..| +++|+||||||||||++.|++..++..|. .+.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLG--GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 677788753211 112344332 3333 89999999999999999999998876442 122
Q ss_pred EEcCCcccCCCCCC------ccccc--------cc----h----------hhcCCCCCcccHHHHHHHHHh------cCC
Q 026207 60 IVDTSNEIGGDGDI------PHSAI--------GT----A----------RRMQVPEPSLQHKVMIEAVEN------HMP 105 (241)
Q Consensus 60 ~i~~~~e~~~~~~~------~~~~~--------~~----~----------~~~~~~~~~~~~~~~~~~~l~------~~p 105 (241)
|+.+...+.....+ ..... .. . .....+|++++++..+++++. .+|
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p 159 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP 159 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 33322111000000 00000 00 0 012235667899999999998 499
Q ss_pred cEEEEcCCCCHHhHHHH-------HHHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 106 EVIIVDEIGTEAEAHAC-------RSIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~-------~~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++++|||++++|+... .... +.|.++|+++|... .+..+ ||+|++
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 213 (258)
T PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN--------LAARY---ADRIVL 213 (258)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------HHHHh---cCEEEE
Confidence 99999999999999543 2333 56889999999886 45556 788776
No 99
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.4e-15 Score=128.38 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=92.7
Q ss_pred CccccceeeEEEEEe-EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------e
Q 026207 1 MLRLRNVFLLIVKFF-YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~-~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~ 57 (241)
|++++|+.. ++- ..+++.. .+..| +++|+||||||||||++.+++..++..|. .
T Consensus 5 ~l~~~~l~~---~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSA---HYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEE---eeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 566777752 211 1233332 22333 89999999999999999999998876442 1
Q ss_pred EEEEcCCcccCCCCCC----------ccc-----c----ccch--------hhcCCCCCcccHHHHHHHHHhcCCcEEEE
Q 026207 58 VVIVDTSNEIGGDGDI----------PHS-----A----IGTA--------RRMQVPEPSLQHKVMIEAVENHMPEVIIV 110 (241)
Q Consensus 58 v~~i~~~~e~~~~~~~----------~~~-----~----~~~~--------~~~~~~~~~~~~~~~~~~~l~~~p~vlil 110 (241)
+.|+.+.........+ ... . .... .....+|++++++..+++++..+|+++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 2233221111100000 000 0 0000 01122566789999999999999999999
Q ss_pred cCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 111 DEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 111 DE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|||++++|+.... ...+.|.++|.++|..+ .+..+ ||+++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 209 (237)
T PRK11614 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN--------QALKL---ADRGYV 209 (237)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH--------HHHhh---CCEEEE
Confidence 9999999995432 33456899999999875 55666 788776
No 100
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=9.5e-16 Score=138.64 Aligned_cols=124 Identities=14% Similarity=0.175 Sum_probs=82.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccc-c-----cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHS-A-----IG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~-~-----~~ 79 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+.....+... . .+
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~ 135 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG 135 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC
Confidence 79999999999999999999999877443 12233221111100000000 0 00
Q ss_pred --------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 80 --------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 80 --------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
. . .....+|+|++|+..+++++..+|+++++|||++++|+.... ... +.|
T Consensus 136 ~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g 215 (400)
T PRK10070 136 INAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215 (400)
T ss_pred CCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC
Confidence 0 0 012335668899999999999999999999999999995432 332 358
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ +|+|++
T Consensus 216 ~TIIivTHd~~--------~~~~~---~Dri~v 237 (400)
T PRK10070 216 RTIVFISHDLD--------EAMRI---GDRIAI 237 (400)
T ss_pred CeEEEEECCHH--------HHHHh---CCEEEE
Confidence 89999999886 44455 677665
No 101
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.62 E-value=1.7e-15 Score=125.87 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=82.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcccCCCCCCccc-cc-----c-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNEIGGDGDIPHS-AI-----G- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e~~~~~~~~~~-~~-----~- 79 (241)
+++|.||||||||||++.+++.+++..|. .+.|+.+...+.....+... .. +
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~ 108 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGV 108 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCC
Confidence 89999999999999999999998876442 12222211111100000000 00 0
Q ss_pred -------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcE
Q 026207 80 -------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVM 131 (241)
Q Consensus 80 -------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~ 131 (241)
. .. ....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.+
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t 188 (214)
T cd03292 109 PPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCE
Confidence 0 00 11235667899999999999999999999999999995432 33445889
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++|... .+..+ ||+++.
T Consensus 189 iiivtH~~~--------~~~~~---~d~i~~ 208 (214)
T cd03292 189 VVVATHAKE--------LVDTT---RHRVIA 208 (214)
T ss_pred EEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999876 55556 787765
No 102
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.62 E-value=2.8e-15 Score=125.64 Aligned_cols=148 Identities=17% Similarity=0.170 Sum_probs=94.3
Q ss_pred CccccceeeEEEEEeE-----EeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------
Q 026207 1 MLRLRNVFLLIVKFFY-----ALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~-----~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------- 56 (241)
||+++|+.. ++-. .++... .+..| +++|.||||||||||++.+++.+++..|.
T Consensus 1 ~l~~~~v~~---~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 1 LLEVKNLSV---SFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred CeEEEeeeE---eccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhH
Confidence 678888852 2211 344443 33344 89999999999999999999998776432
Q ss_pred -----eEEEEcCCcc--cCCCCC--------------Ccc-cccc-----chh-----------hcCCCCCcccHHHHHH
Q 026207 57 -----RVVIVDTSNE--IGGDGD--------------IPH-SAIG-----TAR-----------RMQVPEPSLQHKVMIE 98 (241)
Q Consensus 57 -----~v~~i~~~~e--~~~~~~--------------~~~-~~~~-----~~~-----------~~~~~~~~~~~~~~~~ 98 (241)
.+.|+.+... +..... ... .... ... ....+|++++++..++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 2334332211 100000 000 0000 000 1122456789999999
Q ss_pred HHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 99 AVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++..+|+++++|||++++|+.... +.... |.++|+++|..+ .+..+ ||+++.
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~--------~~~~~---~d~i~~ 218 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG--------VVAKI---ADRVAV 218 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---cCeEEE
Confidence 9999999999999999999995432 33333 889999999886 45556 788776
No 103
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.62 E-value=1.5e-15 Score=141.91 Aligned_cols=149 Identities=15% Similarity=0.118 Sum_probs=92.8
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
||+++|+..-.- -+.++... .+..| +++|+||||||||||++.|+|.+++..|. .+
T Consensus 11 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYS--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 566677652110 01233332 23344 89999999999999999999999876432 12
Q ss_pred EEEcCCcccCCCCCCc---------ccc-----------cc----chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCC
Q 026207 59 VIVDTSNEIGGDGDIP---------HSA-----------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 114 (241)
Q Consensus 59 ~~i~~~~e~~~~~~~~---------~~~-----------~~----~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~ 114 (241)
.|+.+...+.....+. ... ++ .......+|+|+++++.+++++..+|+++++|||+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 2332211111000000 000 00 00112345678899999999999999999999999
Q ss_pred CHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 115 TEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 115 ~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|+.... ...+.|.++|+++|... .+..+ ||+|++
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~--------~~~~~---~d~i~~ 212 (510)
T PRK15439 169 ASLTPAETERLFSRIRELLAQGVGIVFISHKLP--------EIRQL---ADRISV 212 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999995432 34456899999999986 44555 666665
No 104
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.62 E-value=4.6e-15 Score=121.06 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=87.1
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcC--CCCCcccHHHHHHHHHh
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQ--VPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 102 (241)
....++|+|||||||||+++++++.++++ .+++++++..|+.... + .......+.. ...........+..+++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAELQLPH--P-NWVRLVTRPGNVEGSGEVTMADLLRSALR 98 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCccccCCCC--C-CEEEEEEecCCCCCCCccCHHHHHHHHhc
Confidence 35589999999999999999999999876 5678888777764321 0 0011100111 11235678889999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
++||+++++|+++.+ +..+.++.++|+. +++|+|++++.+++.+
T Consensus 99 ~~pd~i~igEir~~e-a~~~~~a~~tGh~g~~~T~Ha~s~~~~~~R 143 (186)
T cd01130 99 MRPDRIIVGEVRGGE-ALDLLQAMNTGHPGGMTTIHANSAEEALTR 143 (186)
T ss_pred cCCCEEEEEccCcHH-HHHHHHHHhcCCCCceeeecCCCHHHHHHH
Confidence 999999999999886 4456677799999 9999999998777643
No 105
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=8.7e-16 Score=132.67 Aligned_cols=149 Identities=19% Similarity=0.163 Sum_probs=92.7
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
|++++|+..-.-. ...++..+ .+..| +++|.||||||||||++.|++.+++..|. .+
T Consensus 1 ml~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7888888632110 01234433 33444 89999999999999999999998877443 12
Q ss_pred EEEcCCcc--cCCCCC-----Ccccccc--------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEE
Q 026207 59 VIVDTSNE--IGGDGD-----IPHSAIG--------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVII 109 (241)
Q Consensus 59 ~~i~~~~e--~~~~~~-----~~~~~~~--------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vli 109 (241)
.|+.+... +..... ......+ .. .....+|++++++..+++++..+|++++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 22221110 000000 0000000 00 0122356678999999999999999999
Q ss_pred EcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 110 VDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 110 lDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|||++++|+.... .....|.++++++|..+ .+ .. ||+|+.
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~--------~~-~~---~d~v~~ 207 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE--------EL-HD---ADRIIV 207 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--------HH-hh---CCEEEE
Confidence 99999999985432 33456899999999986 33 33 677776
No 106
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.62 E-value=4.1e-15 Score=125.11 Aligned_cols=124 Identities=16% Similarity=0.153 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCCCCCcc------cccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGDGDIPH------SAIG--- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~~~~~~------~~~~--- 79 (241)
+++|.||||||||||++.+++.+++..|. .+.|+.+...+.....+.. ...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 107 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSK 107 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCH
Confidence 89999999999999999999998876442 1223221111100000000 0000
Q ss_pred -----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEE
Q 026207 80 -----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLI 133 (241)
Q Consensus 80 -----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi 133 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... +..+.|.++|
T Consensus 108 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii 187 (232)
T cd03218 108 KEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVL 187 (232)
T ss_pred HHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 0 0 011235667799999999999999999999999999995432 3344688999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|..+ .+..+ ||+++.
T Consensus 188 ~~sH~~~--------~~~~~---~d~i~~ 205 (232)
T cd03218 188 ITDHNVR--------ETLSI---TDRAYI 205 (232)
T ss_pred EEeCCHH--------HHHHh---CCEEEE
Confidence 9999875 45566 788776
No 107
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.62 E-value=1.5e-15 Score=130.81 Aligned_cols=148 Identities=14% Similarity=0.144 Sum_probs=92.1
Q ss_pred CccccceeeEEEEEe-EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------
Q 026207 1 MLRLRNVFLLIVKFF-YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~-~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------- 56 (241)
||+++|+.. ++- +.++..+ .+..| +++|+||||||||||++.|++..++..|.
T Consensus 7 ~l~~~~l~~---~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEE---EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 567777752 211 1233332 23333 89999999999999999999998876442
Q ss_pred -eEEEEcCCcccCCCCCCccc------cc-c--c----------hh----------hcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 -RVVIVDTSNEIGGDGDIPHS------AI-G--T----------AR----------RMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 -~v~~i~~~~e~~~~~~~~~~------~~-~--~----------~~----------~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.|+.+...+.....+... .. . . .. ....+|+|++++..+++++..+|+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ 163 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 12233221111100000000 00 0 0 00 112356678999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... ...+ .|.++|+++|... .+..+ ||++++
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~--------~~~~~---~d~v~~ 216 (269)
T PRK11831 164 LIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP--------EVLSI---ADHAYI 216 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH--------HHHHh---hCEEEE
Confidence 99999999999995433 3323 4889999999875 45556 777766
No 108
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=7.4e-16 Score=133.98 Aligned_cols=128 Identities=18% Similarity=0.208 Sum_probs=84.7
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------eEEEEcCCcc--cCCCC------C--
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------RVVIVDTSNE--IGGDG------D-- 72 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~v~~i~~~~e--~~~~~------~-- 72 (241)
+..| +++|.||||||||||++.+++.+++..|. ++.|+.+..+ +.... .
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 109 (287)
T PRK13637 30 IEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGP 109 (287)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHH
Confidence 3344 89999999999999999999999877442 1233322111 00000 0
Q ss_pred ----Cccc-----------cccc------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H
Q 026207 73 ----IPHS-----------AIGT------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S 124 (241)
Q Consensus 73 ----~~~~-----------~~~~------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~ 124 (241)
.... ..+. -.....+|++++++..+++++..+|+++|+|||++++|+.... .
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~ 189 (287)
T PRK13637 110 INLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKE 189 (287)
T ss_pred HHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0000 0000 0012234567899999999999999999999999999995432 3
Q ss_pred HHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 125 IAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 125 ~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
..+ .|.++|+++|... .+..+ ||+|++
T Consensus 190 l~~~~g~tvi~vtHd~~--------~~~~~---~drv~~ 217 (287)
T PRK13637 190 LHKEYNMTIILVSHSME--------DVAKL---ADRIIV 217 (287)
T ss_pred HHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 333 4899999999986 45556 888877
No 109
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.62 E-value=1.3e-15 Score=136.80 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcccccc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHSAIG------------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~~~~------------ 79 (241)
++.|.||||||||||+++|+|..+++.|. ++.++.+...+.....+. .++.
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~-eNi~~~l~~~~~~~~~ 120 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF-ENVAFGLRMQKTPAAE 120 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH-HHHHHHHhhcCCCHHH
Confidence 89999999999999999999999877442 123332221111100000 0000
Q ss_pred ---c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEE
Q 026207 80 ---T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIG 134 (241)
Q Consensus 80 ---~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~ 134 (241)
. . +....+|++++|++++++++..+|+++++|||.+.+|+.... ... +.|.++|.
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~ 200 (375)
T PRK09452 121 ITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVF 200 (375)
T ss_pred HHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0 0 012235668899999999999999999999999999994332 222 35899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+..+ +|+|++
T Consensus 201 vTHd~~--------ea~~l---aDri~v 217 (375)
T PRK09452 201 VTHDQE--------EALTM---SDRIVV 217 (375)
T ss_pred EeCCHH--------HHHHh---CCEEEE
Confidence 999986 44555 777766
No 110
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.62 E-value=8.9e-16 Score=124.28 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=76.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-------CC-CCCcccc-c--cchh-h-cCCCCCcccHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-------GD-GDIPHSA-I--GTAR-R-MQVPEPSLQHK 94 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-------~~-~~~~~~~-~--~~~~-~-~~~~~~~~~~~ 94 (241)
+++|.||||||||||++.+++..++..|. +.++ +.++. .. ...++.. + .... . ...+|.+++++
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGE--ITLD-GVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCE--EEEC-CEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 89999999999999999999999887554 3444 22211 00 1111110 0 0000 0 34567789999
Q ss_pred HHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 95 VMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 95 ~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
..+++++..+|+++++|||++++|+.... .. ..+.++++++|...
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~ 158 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLT 158 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHH
Confidence 99999999999999999999999985432 22 34788999999885
No 111
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.62 E-value=3.4e-15 Score=123.92 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------eEEEEcCCcccCCCCCCcccc-c------c-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------RVVIVDTSNEIGGDGDIPHSA-I------G- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~v~~i~~~~e~~~~~~~~~~~-~------~- 79 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+.........+.... . +
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~ 107 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGM 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCC
Confidence 89999999999999999999998876442 122222111111000000000 0 0
Q ss_pred -------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcE
Q 026207 80 -------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVM 131 (241)
Q Consensus 80 -------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~ 131 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.+
T Consensus 108 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 187 (213)
T cd03262 108 SKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT 187 (213)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCE
Confidence 0 0 012235667899999999999999999999999999995432 33446889
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+..+ ||++++
T Consensus 188 vi~~sh~~~--------~~~~~---~d~i~~ 207 (213)
T cd03262 188 MVVVTHEMG--------FAREV---ADRVIF 207 (213)
T ss_pred EEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999886 55566 787765
No 112
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.62 E-value=2.6e-15 Score=127.08 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=93.7
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~ 57 (241)
||+++|+..-.- -+.++... .+..| +++|+||||||||||++.+++.+++..|. .
T Consensus 1 ~l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 1 MIEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred CEEEEeEEEEEC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 788888863210 01234333 23333 89999999999999999999998876442 1
Q ss_pred EEEEcCCcccCCCCCCccc-cc------c------------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 58 VVIVDTSNEIGGDGDIPHS-AI------G------------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 58 v~~i~~~~e~~~~~~~~~~-~~------~------------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.|+.+...+.....+... .. + .. .....+|++++++..+++++..+|+++
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 158 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLM 158 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 2233221111100000000 00 0 00 011234567799999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... ..++.|.++|+++|... .+..+ ||++++
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 208 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG--------FAEKV---ASRLIF 208 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999999995432 33446889999999886 45555 788776
No 113
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.62 E-value=3.6e-15 Score=123.87 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=82.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCC-------------cccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDI-------------PHSA- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~-------------~~~~- 77 (241)
+++|.||||||||||++.+++.+++..|. ++.|+.+...+.....+ ....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 107 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI 107 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHH
Confidence 89999999999999999999998776432 13333322111100000 0000
Q ss_pred ---cc-chh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEe
Q 026207 78 ---IG-TAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGT 135 (241)
Q Consensus 78 ---~~-~~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t 135 (241)
.. ... ....+|++++++..+++++..+|+++++|||++++|+.... ... +.|.++|++
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~ 187 (213)
T cd03301 108 DERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187 (213)
T ss_pred HHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 00 000 11235667899999999999999999999999999995433 323 348999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ +|+++.
T Consensus 188 sH~~~--------~~~~~---~d~i~~ 203 (213)
T cd03301 188 THDQV--------EAMTM---ADRIAV 203 (213)
T ss_pred eCCHH--------HHHHh---cCeEEE
Confidence 99886 45555 777765
No 114
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=9.8e-16 Score=133.19 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=85.5
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcc--cCCCC-----C-
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNE--IGGDG-----D- 72 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e--~~~~~-----~- 72 (241)
+..| ++.|.||||||||||++.|++.+++..|. .+.|+.+... +.... .
T Consensus 30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~ 109 (287)
T PRK13641 30 LEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEF 109 (287)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHH
Confidence 3344 89999999999999999999999887442 1223321110 00000 0
Q ss_pred --Cccc-----c----------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------
Q 026207 73 --IPHS-----A----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------- 123 (241)
Q Consensus 73 --~~~~-----~----------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------- 123 (241)
.... . ++. ......+|++++++..+++++..+|+++++|||++++|+....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~ 189 (287)
T PRK13641 110 GPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFK 189 (287)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 0000 0 000 0112235667899999999999999999999999999995432
Q ss_pred HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 124 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 124 ~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
...+.|.++|+++|... .+..+ ||+|++
T Consensus 190 ~l~~~g~tvlivsH~~~--------~~~~~---~d~v~~ 217 (287)
T PRK13641 190 DYQKAGHTVILVTHNMD--------DVAEY---ADDVLV 217 (287)
T ss_pred HHHhCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 33456899999999886 55666 888877
No 115
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.62 E-value=3.4e-15 Score=125.02 Aligned_cols=54 Identities=24% Similarity=0.193 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|++++++..+++++..+|+++++|||++++|+.... .....|.++|+++|...
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~ 210 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE 210 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4557799999999999999999999999999995433 33445899999999975
No 116
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.62 E-value=2.9e-15 Score=128.09 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=52.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ..++.|.++|+++|... .+..+ ||+
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~--------~~~~~---~d~ 221 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG--------FARHV---SSH 221 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---cCE
Confidence 4557799999999999999999999999999995432 34456899999999876 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|+.
T Consensus 222 i~~ 224 (257)
T PRK10619 222 VIF 224 (257)
T ss_pred EEE
Confidence 776
No 117
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.62 E-value=4.8e-15 Score=122.75 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcc-------------ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPH-------------SAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~-------------~~~ 78 (241)
+++|.||||||||||++.+++..++..|. .+.|+.+...+.....+.. ...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 107 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRI 107 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHH
Confidence 89999999999999999999998876442 1223332211110000000 000
Q ss_pred cc-h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 79 GT-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 79 ~~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|...
T Consensus 108 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 108 DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred HHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 00 0 012235667899999999999999999999999999995432 33346889999999886
Q ss_pred hhhhhcCCccccccccccEEEe
Q 026207 141 LENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 141 ~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ +|+++.
T Consensus 188 --------~~~~~---~d~v~~ 198 (208)
T cd03268 188 --------EIQKV---ADRIGI 198 (208)
T ss_pred --------HHHHh---cCEEEE
Confidence 45555 777766
No 118
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=7.1e-16 Score=133.56 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=76.8
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc-cCCCCCCccc-cc----
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE-IGGDGDIPHS-AI---- 78 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e-~~~~~~~~~~-~~---- 78 (241)
+..| +++|+||||||||||++.|++.+++..|. .+.|+.+... ......+... ..
T Consensus 30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~ 109 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLEN 109 (279)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhh
Confidence 3344 89999999999999999999999877543 1222221110 0000000000 00
Q ss_pred ---c------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-
Q 026207 79 ---G------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE- 127 (241)
Q Consensus 79 ---~------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~- 127 (241)
. .+ .....+|++++++..+++++..+|+++++|||++++|+.... ...+
T Consensus 110 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 189 (279)
T PRK13635 110 IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ 189 (279)
T ss_pred CCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 0 00 012235667899999999999999999999999999995432 3333
Q ss_pred CCcEEEEeecCCC
Q 026207 128 RGVMLIGTAHGEW 140 (241)
Q Consensus 128 ~g~~vi~t~H~~~ 140 (241)
.|.++++++|...
T Consensus 190 ~~~tilivsH~~~ 202 (279)
T PRK13635 190 KGITVLSITHDLD 202 (279)
T ss_pred CCCEEEEEecCHH
Confidence 3899999999986
No 119
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.62 E-value=4.5e-15 Score=122.32 Aligned_cols=135 Identities=15% Similarity=0.109 Sum_probs=86.6
Q ss_pred CccccceeeEEEEEeEEeeCcce--e-eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-------C
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--I-IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-------D 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~-~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-------~ 70 (241)
||+++|+..-. . -..++...+ + ...+++|.||||||||||++.+++..++..|. ++++ +..+.. .
T Consensus 1 ml~~~~l~~~~-~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~--v~~~-g~~~~~~~~~~~~~ 75 (200)
T PRK13540 1 MLDVIELDFDY-H-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE--ILFE-RQSIKKDLCTYQKQ 75 (200)
T ss_pred CEEEEEEEEEe-C-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee--EEEC-CCccccCHHHHHhh
Confidence 78888886321 1 122444332 2 22389999999999999999999999877553 3333 111100 0
Q ss_pred -CCC-------cc----cccc----------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCC
Q 026207 71 -GDI-------PH----SAIG----------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 114 (241)
Q Consensus 71 -~~~-------~~----~~~~----------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~ 114 (241)
... +. ..+. . . .....+|++++++..+++++..+|+++++|||+
T Consensus 76 i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 76 LCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred eEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 000 00 0000 0 0 011235667899999999999999999999999
Q ss_pred CHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 115 TEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 115 ~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+++|+.... ..++.|.++|+++|...
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 188 (200)
T PRK13540 156 VALDELSLLTIITKIQEHRAKGGAVLLTSHQDL 188 (200)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 999995432 33456889999999875
No 120
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.3e-15 Score=132.21 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=93.9
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~ 57 (241)
||+++|+..-.- .-..++..+ .+..| +++|.||||||||||++.|++.+++..|. .
T Consensus 5 ~l~~~~l~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYS-DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeC-CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 567777752110 001234332 33344 89999999999999999999999877442 1
Q ss_pred EEEEcCCcc--cCCCC------------CCcccc-ccc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 58 VVIVDTSNE--IGGDG------------DIPHSA-IGT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 58 v~~i~~~~e--~~~~~------------~~~~~~-~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.|+.+... +.... ..+... ... . .....+|++++++..+++++..+|+++
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 233322110 00000 000000 000 0 012235667899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+|||++++|+.... ...+ .|.++++++|..+ .+..+ ||++++
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~--------~~~~~---~dri~~ 214 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID--------IVPLY---CDNVFV 214 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 999999999995432 3333 3899999999987 45556 788776
No 121
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=1.7e-15 Score=136.27 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=83.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcccccc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHSAIG------------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~~~~------------ 79 (241)
++.|.||||||||||+++|++..+++.|. .+.|+.+...+.....+. .++.
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~-eNi~~~l~~~~~~~~~ 125 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE-QNIAFGLKQDKLPKAE 125 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH-HHHHHHHHHcCCCHHH
Confidence 89999999999999999999999877442 123333222111110000 0000
Q ss_pred ---ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEE
Q 026207 80 ---TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIG 134 (241)
Q Consensus 80 ---~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~ 134 (241)
+. ++...+|++++|++++++++..+|+++++|||.+.+|..... .. .+.|.++|.
T Consensus 126 ~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 205 (377)
T PRK11607 126 IASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205 (377)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 00 012235667899999999999999999999999999995432 22 345899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+..+ +|++++
T Consensus 206 vTHd~~--------ea~~l---aDri~v 222 (377)
T PRK11607 206 VTHDQE--------EAMTM---AGRIAI 222 (377)
T ss_pred EcCCHH--------HHHHh---CCEEEE
Confidence 999886 44555 777766
No 122
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.61 E-value=3.4e-15 Score=124.11 Aligned_cols=124 Identities=17% Similarity=0.240 Sum_probs=84.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccC---CCC--------CCc---------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIG---GDG--------DIP--------- 74 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~---~~~--------~~~--------- 74 (241)
++.|+||||||||||++.+++..+++.|. ++.|+.+..... ... ...
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 106 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS 106 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCC
Confidence 89999999999999999999998876442 234444322110 000 000
Q ss_pred cccccch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEE
Q 026207 75 HSAIGTA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLI 133 (241)
Q Consensus 75 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi 133 (241)
......+ .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|
T Consensus 107 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi 186 (213)
T cd03235 107 KADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTIL 186 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 0000000 112345678899999999999999999999999999995432 3344688999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|..+ .+..+ ||+++.
T Consensus 187 ~~sH~~~--------~~~~~---~d~i~~ 204 (213)
T cd03235 187 VVTHDLG--------LVLEY---FDRVLL 204 (213)
T ss_pred EEeCCHH--------HHHHh---cCEEEE
Confidence 9999986 55666 788775
No 123
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=2e-15 Score=127.13 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=92.7
Q ss_pred CccccceeeEEEEEeEEeeCcceeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcC
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDT 63 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~ 63 (241)
||+++|+..-.-.... .. ...+..| +++|+||||||||||++.+++..++..|. .+.|+.+
T Consensus 1 ~l~~~~l~~~~~~~~~-~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLPM-RF-DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCccc-ee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 7888888632211010 01 1223333 89999999999999999999998876442 1333332
Q ss_pred CcccCCC-C--------CCcccc--------cc-chh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCC
Q 026207 64 SNEIGGD-G--------DIPHSA--------IG-TAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 64 ~~e~~~~-~--------~~~~~~--------~~-~~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~ 115 (241)
...+... . ..+... .. ... ....+|++++++..+++++..+|+++++|||++
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 158 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFS 158 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2111100 0 000000 00 000 122356678999999999999999999999999
Q ss_pred HHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 116 EAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 116 ~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+.... ... +.|.++|+++|... .+..+ ||+++.
T Consensus 159 gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 202 (232)
T PRK10771 159 ALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE--------DAARI---APRSLV 202 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 99995432 333 34889999999987 45555 777766
No 124
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=9.7e-16 Score=132.71 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=81.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc--cCCCC-----CCcccccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE--IGGDG-----DIPHSAIG--- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e--~~~~~-----~~~~~~~~--- 79 (241)
+++|+||||||||||++.+++.+++..|. ++.|+.+... +.... .......+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~ 114 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPH 114 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCH
Confidence 89999999999999999999999877543 1222221110 00000 00000000
Q ss_pred -----ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEE
Q 026207 80 -----TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVML 132 (241)
Q Consensus 80 -----~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~v 132 (241)
.+ .....+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.++
T Consensus 115 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 194 (279)
T PRK13650 115 EEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTV 194 (279)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 00 012235667899999999999999999999999999995432 3333 48999
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+++|... .+ .. ||++++
T Consensus 195 livtH~~~--------~~-~~---~dri~~ 212 (279)
T PRK13650 195 ISITHDLD--------EV-AL---SDRVLV 212 (279)
T ss_pred EEEecCHH--------HH-Hh---CCEEEE
Confidence 99999986 33 24 777766
No 125
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.3e-15 Score=127.56 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC---------CC-cc--cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG---------DI-PH--SA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~---------~~-~~--~~ 77 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+...+.... .. .. ..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 110 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVD 110 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHH
Confidence 89999999999999999999998876442 123332221110000 00 00 00
Q ss_pred -------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeec
Q 026207 78 -------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAH 137 (241)
Q Consensus 78 -------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H 137 (241)
.+. ......+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.++|+++|
T Consensus 111 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH 190 (241)
T PRK14250 111 VEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190 (241)
T ss_pred HHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 000 0112235668899999999999999999999999999995432 3333 4889999999
Q ss_pred CCChhhhhcCCccccccccccEEEe
Q 026207 138 GEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 138 ~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
... .+..+ ||+|+.
T Consensus 191 ~~~--------~~~~~---~d~i~~ 204 (241)
T PRK14250 191 NME--------QAKRI---GDYTAF 204 (241)
T ss_pred cHH--------HHHHh---CCEEEE
Confidence 886 45556 788776
No 126
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=2.7e-15 Score=127.12 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=92.3
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-.- -+.++...+ +.. .+++|.||||||||||++.|+|..++..|.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYG--AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEEC--CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 566777742110 013344332 223 389999999999999999999998876442
Q ss_pred ---eEEEEcCCcccCCCCCCcccc-c------c--------c----h----------hhcCCCCCcccHHHHHHHHHhcC
Q 026207 57 ---RVVIVDTSNEIGGDGDIPHSA-I------G--------T----A----------RRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 57 ---~v~~i~~~~e~~~~~~~~~~~-~------~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
.+.|+.+...+.....+.... . + . . .....+|++++++..+++++..+
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 122232211111000000000 0 0 0 0 01223566789999999999999
Q ss_pred CcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 105 PEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+++++|||++++|+.... ...++|.++++++|... .+..+ +|++++
T Consensus 160 p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--------~~~~~---~d~i~~ 213 (242)
T PRK11124 160 PQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE--------VARKT---ASRVVY 213 (242)
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 9999999999999995432 33446899999999886 44555 777766
No 127
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.3e-15 Score=132.39 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=84.2
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcc--cCCC------CC
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNE--IGGD------GD 72 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e--~~~~------~~ 72 (241)
+..| ++.|.||||||||||++.|++.+++..|. ++.|+.+..+ +... ..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~ 109 (286)
T PRK13646 30 FEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIF 109 (286)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHh
Confidence 3444 89999999999999999999999877542 1223222110 0000 00
Q ss_pred ------Ccc-c----------cccch-----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------
Q 026207 73 ------IPH-S----------AIGTA-----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------- 123 (241)
Q Consensus 73 ------~~~-~----------~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------- 123 (241)
... . ..+.. .....+|++++++..+++++..+|+++++|||++++|+....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~ 189 (286)
T PRK13646 110 GPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLK 189 (286)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 000 0 00000 012234567799999999999999999999999999995432
Q ss_pred HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 124 SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 124 ~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
... +.|.++++++|..+ .+..+ ||+|+.
T Consensus 190 ~l~~~~g~tvl~vtH~~~--------~~~~~---~dri~~ 218 (286)
T PRK13646 190 SLQTDENKTIILVSHDMN--------EVARY---ADEVIV 218 (286)
T ss_pred HHHHhCCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 333 35899999999986 45555 788776
No 128
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.61 E-value=4.4e-15 Score=124.01 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=75.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDI------------ 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~------------ 73 (241)
+++|+||||||||||++.|++..++..|. ++.|+.+...+.....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 112 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK 112 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC
Confidence 89999999999999999999998876442 13333322111100000
Q ss_pred -cccc-ccc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 74 -PHSA-IGT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 74 -~~~~-~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
.... ... . .....+|++++++..+++++..+|+++++|||++++|+.... ... +.|
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ 192 (221)
T TIGR02211 113 KSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN 192 (221)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 0000 000 0 012235667899999999999999999999999999995432 232 348
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
.++|+++|..+
T Consensus 193 ~tii~~tH~~~ 203 (221)
T TIGR02211 193 TSFLVVTHDLE 203 (221)
T ss_pred CEEEEEeCCHH
Confidence 89999999875
No 129
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.61 E-value=2.9e-15 Score=125.00 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=81.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCC-------------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDI-------------PHSA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~-------------~~~~ 77 (241)
+++|+||||||||||++.+++..++..|. ++.|+.+.........+ +...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 109 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSE 109 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHH
Confidence 89999999999999999999998877442 12233211111100000 0000
Q ss_pred c-cc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEe
Q 026207 78 I-GT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGT 135 (241)
Q Consensus 78 ~-~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t 135 (241)
. .. . .....+|.+++++..+++++..+|+++++|||++++|+.... ... .+.++|++
T Consensus 110 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~ 188 (220)
T cd03263 110 IKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSIILT 188 (220)
T ss_pred HHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEE
Confidence 0 00 0 012235567799999999999999999999999999995432 333 35889999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ ||++++
T Consensus 189 sH~~~--------~~~~~---~d~i~~ 204 (220)
T cd03263 189 THSMD--------EAEAL---CDRIAI 204 (220)
T ss_pred cCCHH--------HHHHh---cCEEEE
Confidence 99886 45556 788776
No 130
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.3e-15 Score=132.64 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=83.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCc--ccCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSN--EIGGDG------------ 71 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~--e~~~~~------------ 71 (241)
+++|.||||||||||++.|++.+++..|. ++.|+.+.. .+....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~ 114 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF 114 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc
Confidence 89999999999999999999998876442 133333211 010000
Q ss_pred CCccc-----------cccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-h
Q 026207 72 DIPHS-----------AIGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-E 127 (241)
Q Consensus 72 ~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~ 127 (241)
..... ..+. -.....+|++++++..+++++..+|+++|+|||++++|+.... ... +
T Consensus 115 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~ 194 (290)
T PRK13634 115 GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE 194 (290)
T ss_pred CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 00000 0000 0012235667899999999999999999999999999995433 332 3
Q ss_pred CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 128 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 128 ~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.|.+||+++|..+ .+..+ ||+|++
T Consensus 195 ~g~tviiitHd~~--------~~~~~---~drv~~ 218 (290)
T PRK13634 195 KGLTTVLVTHSME--------DAARY---ADQIVV 218 (290)
T ss_pred cCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 4899999999987 55566 888877
No 131
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=8e-15 Score=122.12 Aligned_cols=124 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------eEEEEcCCcccCCCCCCc--------------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------RVVIVDTSNEIGGDGDIP--------------HSAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------~v~~i~~~~e~~~~~~~~--------------~~~~ 78 (241)
+++|.||||||||||++.+++..++..|. .+.|+.+...+....... ....
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~ 118 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMP 118 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHH
Confidence 89999999999999999999998877442 133333221111100000 0000
Q ss_pred -cchh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 79 -GTAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 79 -~~~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.... ....+|++++++..+++++..+|+++++|||++++|+.... ..++.|.++|+++|..+
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 119 GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred HHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 0000 11235667899999999999999999999999999995432 34456889999999886
Q ss_pred hhhhhcCCccccccccccEEEe
Q 026207 141 LENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 141 ~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+.++ ||+++.
T Consensus 199 --------~~~~~---~~~i~~ 209 (214)
T PRK13543 199 --------AAPPV---RTRMLT 209 (214)
T ss_pred --------hhhhh---cceEEE
Confidence 55556 677654
No 132
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.61 E-value=4.3e-15 Score=138.10 Aligned_cols=146 Identities=15% Similarity=0.104 Sum_probs=93.8
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC--------C
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG--------G 69 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~--------~ 69 (241)
||+++|+..-.- -+.++...+ +..| +++|+||||||||||++.+++.++++.|. +.++ +.++. .
T Consensus 3 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~--i~~~-~~~~~~~~~~~~~~ 77 (490)
T PRK10938 3 SLQISQGTFRLS--DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGE--RQSQ-FSHITRLSFEQLQK 77 (490)
T ss_pred eEEEEeEEEEcC--CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCce--EEEC-CcccccCCHHHHHH
Confidence 578888863210 112444432 3333 89999999999999999999999877543 2222 11000 0
Q ss_pred C-CCCcc-------------------ccc-------cc--------------hhhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 70 D-GDIPH-------------------SAI-------GT--------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 70 ~-~~~~~-------------------~~~-------~~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
. +.+++ ..+ .+ ......+|+|++++..+++++..+|+++
T Consensus 78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (490)
T PRK10938 78 LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLL 157 (490)
T ss_pred HhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 0 00000 000 00 0123346778899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... ...+.|.++|+++|... .+.++ ||+|++
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~--------~~~~~---~d~v~~ 207 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD--------EIPDF---VQFAGV 207 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--------HHHhh---CCEEEE
Confidence 999999999995432 34455889999999876 45555 676665
No 133
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=4.6e-15 Score=117.59 Aligned_cols=119 Identities=19% Similarity=0.258 Sum_probs=84.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-CCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+++|+||||+|||||++.+++.+.+..|. ++++ +...... ........+...+ +|.+++++..++.++..+|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~--i~~~-~~~~~~~~~~~~~~~i~~~~q---lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGE--ILID-GKDIAKLPLEELRRRIGYVPQ---LSGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccE--EEEC-CEEcccCCHHHHHhceEEEee---CCHHHHHHHHHHHHHhcCC
Confidence 389999999999999999999999877544 5665 3332110 0000011111111 7789999999999999999
Q ss_pred cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 106 EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++++|||++++|..... .....+.++++++|..+ .+..+ ||.++.
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--------~~~~~---~d~i~~ 152 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE--------LAELA---ADRVIV 152 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999999999984432 33344689999999986 44555 677654
No 134
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.60 E-value=4.7e-15 Score=123.87 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=82.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCCCCCc------cccc----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGDGDIP------HSAI---- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~~~~~------~~~~---- 78 (241)
+++|+||||||||||++.+++.+++..|. .+.|+.+...+.....+. ....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~ 107 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAK 107 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchh
Confidence 89999999999999999999998876442 123332211111000000 0000
Q ss_pred ---------cch--------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEE
Q 026207 79 ---------GTA--------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIG 134 (241)
Q Consensus 79 ---------~~~--------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~ 134 (241)
... .....+|++++++..+++++..+|+++++|||++++|+.... .....|.++|+
T Consensus 108 ~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 187 (222)
T cd03224 108 RKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILL 187 (222)
T ss_pred HHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 000 011225667899999999999999999999999999995432 33446889999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+..+ ||++++
T Consensus 188 ~sH~~~--------~~~~~---~d~i~~ 204 (222)
T cd03224 188 VEQNAR--------FALEI---ADRAYV 204 (222)
T ss_pred EeCCHH--------HHHHh---ccEEEE
Confidence 999876 55566 788776
No 135
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.1e-15 Score=139.54 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=90.2
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccCCC
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGD 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~~~ 70 (241)
||+++|+..-. . -+.++...+ +..| +++|+||||||||||++.|++.++++.|. ++.|+.+.......
T Consensus 1 ml~i~~ls~~~-~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 1 MLSTANITMQF-G-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred CEEEEEEEEEe-C-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 78888886311 0 123444433 3333 89999999999999999999998876443 23344322111100
Q ss_pred CCC------------------------c-----------------------c--c-------cccc---h--hhcCCCCC
Q 026207 71 GDI------------------------P-----------------------H--S-------AIGT---A--RRMQVPEP 89 (241)
Q Consensus 71 ~~~------------------------~-----------------------~--~-------~~~~---~--~~~~~~~~ 89 (241)
..+ + . . .++. . .....+|+
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 000 0 0 0 0000 0 12344677
Q ss_pred cccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 90 SLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 90 ~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
|+++++.+++++..+|+++++|||++++|+.... ...+.|.+||+++|...
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~ 213 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRH 213 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 8999999999999999999999999999996554 23345889999999987
No 136
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=4.6e-15 Score=125.03 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=75.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCcccc-c-----c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHSA-I-----G 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~~-~-----~ 79 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+...+.....+.... . +
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 116 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK 116 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 89999999999999999999998766332 233443221111100000000 0 0
Q ss_pred --------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 80 --------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 80 --------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
. .. ....+|++++++..+++++..+|+++++|||++++|+.... ... ..|
T Consensus 117 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g 196 (233)
T PRK11629 117 KKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 0 00 11235567899999999999999999999999999995432 333 358
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
.++|+++|..+
T Consensus 197 ~tvii~sH~~~ 207 (233)
T PRK11629 197 TAFLVVTHDLQ 207 (233)
T ss_pred CEEEEEeCCHH
Confidence 99999999886
No 137
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.60 E-value=5.5e-15 Score=124.07 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=75.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDI------------ 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~------------ 73 (241)
+++|+||||||||||++.|++..++..|. .+.|+.+...+.....+
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~ 117 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG 117 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC
Confidence 89999999999999999999998776432 23333221111100000
Q ss_pred -ccc----c-------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 74 -PHS----A-------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 74 -~~~----~-------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
... . .+. ......+|++++++..+++++..+|+++++|||++++|+.... +.. +.|
T Consensus 118 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 197 (228)
T PRK10584 118 ESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG 197 (228)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 000 0 000 0012235667899999999999999999999999999984332 332 348
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
.++|+++|...
T Consensus 198 ~tii~~sH~~~ 208 (228)
T PRK10584 198 TTLILVTHDLQ 208 (228)
T ss_pred CEEEEEecCHH
Confidence 89999999985
No 138
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=4e-15 Score=127.11 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=94.3
Q ss_pred CccccceeeEEEEEe-EEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eE
Q 026207 1 MLRLRNVFLLIVKFF-YALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~-~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v 58 (241)
||+++|+.. ++- +.++..++ +..| +++|+||||||||||++.+++.+++..|. .+
T Consensus 2 ~l~~~~l~~---~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTV---GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEE---EECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 677888753 211 12344332 3333 89999999999999999999998776442 13
Q ss_pred EEEcCCcccCCC-C------CC-----------ccccccc----h----------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 59 VIVDTSNEIGGD-G------DI-----------PHSAIGT----A----------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 59 ~~i~~~~e~~~~-~------~~-----------~~~~~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.|+.+...+... . .. ....... . .....+|+|++++..+++++..+|+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 333322111100 0 00 0000000 0 0122356688999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... .....|.++|+++|... .+..+ ||++++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~--------~~~~~---~d~i~~ 210 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN--------QASRY---CDHLVV 210 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH--------HHHHh---cCEEEE
Confidence 99999999999995432 33345889999999886 45556 777766
No 139
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.60 E-value=7e-15 Score=123.08 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=83.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC--------------eEEEEcCCcccCCCCCCccc------ccc----c---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------RVVIVDTSNEIGGDGDIPHS------AIG----T--- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------~v~~i~~~~e~~~~~~~~~~------~~~----~--- 80 (241)
+++|.||||||||||++.+++.+++..|. .+.|+.+.........+... ..+ .
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 107 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDE 107 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHH
Confidence 89999999999999999999998877542 12333322111110000000 000 0
Q ss_pred -hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChh
Q 026207 81 -AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLE 142 (241)
Q Consensus 81 -~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~ 142 (241)
.. ....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 108 ~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-- 185 (223)
T TIGR03740 108 VLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-- 185 (223)
T ss_pred HHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--
Confidence 00 12235667899999999999999999999999999995432 33445889999999876
Q ss_pred hhhcCCccccccccccEEEe
Q 026207 143 NIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 143 ~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+++.
T Consensus 186 ------~~~~~---~d~i~~ 196 (223)
T TIGR03740 186 ------EVQQL---ADHIGI 196 (223)
T ss_pred ------HHHHh---cCEEEE
Confidence 44555 787766
No 140
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.60 E-value=7.3e-15 Score=121.16 Aligned_cols=121 Identities=17% Similarity=0.105 Sum_probs=82.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc--cccCCCeEEEEcCCcccCC--------C--CCCccccc-------cc-hhhc-CC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL--SDEFQKRVVIVDTSNEIGG--------D--GDIPHSAI-------GT-ARRM-QV 86 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l--~~~~g~~v~~i~~~~e~~~--------~--~~~~~~~~-------~~-~~~~-~~ 86 (241)
+++|.||||||||||++.+++.. .+..|. ++++ +.++.. . ...++... .. .... ..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~--i~~~-g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~ 104 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGE--ILFK-GEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEG 104 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCccE--EEEC-CEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcccc
Confidence 89999999999999999999984 455443 4443 222110 0 01111100 00 0122 35
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccc-cccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSD-LIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~-l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++++++|..+ .+.+ + +|
T Consensus 105 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~--------~~~~~~---~d 173 (200)
T cd03217 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR--------LLDYIK---PD 173 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHhh---CC
Confidence 6778999999999999999999999999999984332 33445889999999875 3344 4 67
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 174 ~i~~ 177 (200)
T cd03217 174 RVHV 177 (200)
T ss_pred EEEE
Confidence 7665
No 141
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.60 E-value=3.4e-15 Score=139.50 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=93.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
||+++|+..-.- -+.++... .+..| +++|+||||||||||++.|++.++++.|. .+
T Consensus 5 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFG--PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 567777752110 11234433 23344 89999999999999999999998776432 13
Q ss_pred EEEcCCcccCCC-C-----CCc--------c------cc-ccc--------------hhhcCCCCCcccHHHHHHHHHhc
Q 026207 59 VIVDTSNEIGGD-G-----DIP--------H------SA-IGT--------------ARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 59 ~~i~~~~e~~~~-~-----~~~--------~------~~-~~~--------------~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
.|+.+...+... . ... . .. ... ......+|+|++|++.+++++..
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 333321111000 0 000 0 00 000 01123356788999999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 104 MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++++|||++++|+.... +..+.|.++|+++|... .+..+ ||+|++
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~--------~~~~~---~d~v~~ 217 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA--------EIRRI---CDRYTV 217 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999999995432 34456899999999876 44455 666655
No 142
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.60 E-value=3.8e-15 Score=138.87 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=93.9
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
||+++|+..-.- -..++...+ +..| +++|+||||||||||++.+++.++++.|. .+
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFP--GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeC--CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 677777753210 112344332 3333 89999999999999999999999876442 12
Q ss_pred EEEcCCcccCCC-C------C--Ccc---ccc------cc----h----------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 59 VIVDTSNEIGGD-G------D--IPH---SAI------GT----A----------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 59 ~~i~~~~e~~~~-~------~--~~~---~~~------~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.|+.+....... . . ... ... .. . .....+|+|++++..+++++..+|+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 333221111000 0 0 000 000 00 0 0123356688999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... ...+.|.++|+++|..+ .+.++ ||+|++
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~--------~~~~~---~d~i~~ 213 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK--------EIFEI---CDDVTV 213 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999995432 34456889999999886 55556 777766
No 143
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.60 E-value=6.1e-15 Score=124.39 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=53.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|+|++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||+
T Consensus 144 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~--------~~~~~---~d~ 212 (236)
T cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD--------VVMSL---ADR 212 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995332 33446889999999886 55566 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 213 i~~ 215 (236)
T cd03219 213 VTV 215 (236)
T ss_pred EEE
Confidence 776
No 144
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=6.7e-15 Score=122.14 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=83.8
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCcccccc------
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPHSAIG------ 79 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~~~~~------ 79 (241)
.+..|+++|.||||||||||++.+++.+++..|. .+.|+.+.........+. ..+.
T Consensus 22 ~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~-~~l~~~~~~~ 100 (211)
T cd03264 22 TLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR-EFLDYIAWLK 100 (211)
T ss_pred EEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH-HHHHHHHHHh
Confidence 3445699999999999999999999998876442 122332111111000000 0000
Q ss_pred ---------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCC
Q 026207 80 ---------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERG 129 (241)
Q Consensus 80 ---------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g 129 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... .... +
T Consensus 101 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 179 (211)
T cd03264 101 GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-D 179 (211)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-C
Confidence 0 0 012235667899999999999999999999999999995432 3333 5
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|... .+.++ +|+++.
T Consensus 180 ~tii~vsH~~~--------~~~~~---~d~i~~ 201 (211)
T cd03264 180 RIVILSTHIVE--------DVESL---CNQVAV 201 (211)
T ss_pred CEEEEEcCCHH--------HHHHh---CCEEEE
Confidence 88999999886 45556 787776
No 145
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.59 E-value=6.2e-15 Score=122.61 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=83.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCC---------cc------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDI---------PH------ 75 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~---------~~------ 75 (241)
.+++|.||||||||||++.+++.+++..|. .+.|+.+...+...... +.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~ 104 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAE 104 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCCccHH
Confidence 389999999999999999999999877442 12333322111110000 00
Q ss_pred --cccc-ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEE
Q 026207 76 --SAIG-TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIG 134 (241)
Q Consensus 76 --~~~~-~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~ 134 (241)
.... .. .....+|.+++++..+++++..+|+++++|||++++|+.... ...+ .|.++|+
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~ 184 (213)
T TIGR01277 105 QQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184 (213)
T ss_pred HHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0000 00 012235667899999999999999999999999999995433 3333 4889999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+.++ ||+++.
T Consensus 185 vsh~~~--------~~~~~---~d~v~~ 201 (213)
T TIGR01277 185 VTHHLS--------DARAI---ASQIAV 201 (213)
T ss_pred EeCCHH--------HHHhh---cCeEEE
Confidence 999986 45556 788776
No 146
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.59 E-value=3.8e-15 Score=128.01 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=81.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcc--cCCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNE--IGGDGD------------ 72 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e--~~~~~~------------ 72 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+... +.....
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 118 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL 118 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999998876442 1333332110 100000
Q ss_pred --Ccc-cc----ccchh-----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh
Q 026207 73 --IPH-SA----IGTAR-----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE 127 (241)
Q Consensus 73 --~~~-~~----~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~ 127 (241)
... .. ..... ....+|++++++..+++++..+|+++++|||++++|+.... ...+
T Consensus 119 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (265)
T TIGR02769 119 TSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ 198 (265)
T ss_pred cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 000 00 00000 11224557799999999999999999999999999995332 3333
Q ss_pred -CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 128 -RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 128 -~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.|.++|+++|..+ .+..+ ||++++
T Consensus 199 ~~g~tiiivsH~~~--------~~~~~---~d~i~~ 223 (265)
T TIGR02769 199 AFGTAYLFITHDLR--------LVQSF---CQRVAV 223 (265)
T ss_pred hcCcEEEEEeCCHH--------HHHHH---hcEEEE
Confidence 4889999999886 44555 777776
No 147
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.59 E-value=7.5e-15 Score=131.10 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=83.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCC------cccc------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDI------PHSA------IG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~------~~~~------~~ 79 (241)
++.|.||||||||||+++|++..+++.|. ++.|+.+...+.....+ +... ..
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~ 109 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPN 109 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCC
Confidence 89999999999999999999999877442 22333322111110000 0000 00
Q ss_pred ------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcE
Q 026207 80 ------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVM 131 (241)
Q Consensus 80 ------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~ 131 (241)
. . .....+|++++|++.+++++..+|+++++|||++++|+.... +.. +.|.+
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~t 189 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFT 189 (353)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 0 0 012235667899999999999999999999999999994432 333 34899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|... .+..+ ||+|++
T Consensus 190 ii~vTHd~~--------ea~~~---~Dri~v 209 (353)
T PRK10851 190 SVFVTHDQE--------EAMEV---ADRVVV 209 (353)
T ss_pred EEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999986 55566 787776
No 148
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.59 E-value=4.4e-15 Score=126.41 Aligned_cols=125 Identities=16% Similarity=0.167 Sum_probs=86.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC------eEEEEcCCcccCCCCCCcc----------c--c--------ccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGGDGDIPH----------S--A--------IGT 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------~v~~i~~~~e~~~~~~~~~----------~--~--------~~~ 80 (241)
.+++|+||||||||||++.|++.+++..|. ++.|+.+.........+.. . . ++.
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l 105 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI 105 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence 489999999999999999999999877442 4455543221111000000 0 0 000
Q ss_pred ----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCC
Q 026207 81 ----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p 148 (241)
......+|++++++..+++++..+|+++++|||++.+|+.... ... +.|.++|+++|...
T Consensus 106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-------- 177 (246)
T cd03237 106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII-------- 177 (246)
T ss_pred HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------
Confidence 0122346778899999999999999999999999999995432 322 34899999999986
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|++
T Consensus 178 ~~~~~---~d~i~~ 188 (246)
T cd03237 178 MIDYL---ADRLIV 188 (246)
T ss_pred HHHHh---CCEEEE
Confidence 45556 787776
No 149
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.59 E-value=5.9e-15 Score=124.98 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=92.4
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
||+++|+..-.-. +.++...+ +.. .+++|.||||||||||++.|++.+++..|. .+
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 6777888532110 12344332 223 389999999999999999999998776442 12
Q ss_pred EEEcCCcccCCCCCCcc---------------------c-cccc----h----------hhcCCCCCcccHHHHHHHHHh
Q 026207 59 VIVDTSNEIGGDGDIPH---------------------S-AIGT----A----------RRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 59 ~~i~~~~e~~~~~~~~~---------------------~-~~~~----~----------~~~~~~~~~~~~~~~~~~~l~ 102 (241)
.|+.+...+.....+.. . .... . .....+|++++++..+++++.
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 23321111110000000 0 0000 0 012235667899999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+|+++++|||++++|+.... ... .+.++|+++|..+ .+.++ ||+++.
T Consensus 160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~--------~~~~~---~d~i~~ 214 (242)
T TIGR03411 160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLA-GKHSVVVVEHDME--------FVRSI---ADKVTV 214 (242)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 999999999999999995433 222 3689999999886 55566 788776
No 150
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=99.59 E-value=1.2e-14 Score=128.59 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=89.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.++|+|++||||||++++++..++++ .+++++++..|+..... +........+.........+...+..+++++|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~--~ri~tiEd~~El~l~~~-~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~P 236 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI--ERLITVEDAREIVLSNH-PNRVHLLASKGGQGRAKVTTQDLIEACLRLRP 236 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCC--CeEEEecCCCccccccC-CCEEEEEecCCCCCcCcCcHHHHHHHHhccCC
Confidence 5589999999999999999999999876 79999998888854211 11110000111112235678899999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhc
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIK 146 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~ 146 (241)
|+|+++|+++.+ +..+.++.++||. +++|+|++++.+++.
T Consensus 237 D~IivGEiR~~e-a~~~l~a~~tGh~G~~tTiHa~s~~~ai~ 277 (332)
T PRK13900 237 DRIIVGELRGAE-AFSFLRAINTGHPGSISTLHADSPAMAIE 277 (332)
T ss_pred CeEEEEecCCHH-HHHHHHHHHcCCCcEEEEEecCCHHHHHH
Confidence 999999999875 4556778899997 999999999877764
No 151
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.59 E-value=4.6e-15 Score=126.72 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=93.1
Q ss_pred CccccceeeEEEEEeEEeeCcce--eec-cEEEEEeCCCchHHHHHHHHHHhccc----cCCC----------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIF-DFFLSYFRPGVGKTTVMREIARVLSD----EFQK----------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~----~~g~----------------~ 57 (241)
||+++|+..-. -..++...+ +.. .+++|+||||||||||++.|++..++ +.|. .
T Consensus 4 ~l~~~~l~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA---AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred EEEEeCeEEEe---ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 56778886322 123444433 233 38999999999999999999999877 4332 2
Q ss_pred EEEEcCCcc--cCCCCCCccc------cccc----------hh-------------hcCCCCCcccHHHHHHHHHhcCCc
Q 026207 58 VVIVDTSNE--IGGDGDIPHS------AIGT----------AR-------------RMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 58 v~~i~~~~e--~~~~~~~~~~------~~~~----------~~-------------~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+.|+.+... +.....+... ..+. .. ....+|++++++..+++++..+|+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 334432211 0000000000 0000 00 112356688999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+|||++++|+.... ... +.|.++++++|... .+..+ ||++++
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~--------~~~~~---~d~v~~ 213 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG--------VVARL---ADDVAV 213 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH--------HHHHh---CCEEEE
Confidence 99999999999985432 332 34889999999876 44555 787766
No 152
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=3.5e-15 Score=131.95 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=52.9
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
.+|++++|+..+++++..+|++||+|||++++|..... ... +.|.++|+++|... .+.++ |
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~--------~~~~~---a 222 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS--------VVEHI---A 222 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---C
Confidence 35668899999999999999999999999999984332 333 34899999999987 55556 7
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+|++
T Consensus 223 drv~v 227 (327)
T PRK11308 223 DEVMV 227 (327)
T ss_pred CEEEE
Confidence 77665
No 153
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.59 E-value=1.3e-14 Score=119.72 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=74.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCC------c--cc---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDI------P--HS---AIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~------~--~~---~~~ 79 (241)
++.|.||||||||||++.+++.+++..|. .+.|+.+...+.....+ . .. ...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 107 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVE 107 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHH
Confidence 89999999999999999999998877442 11222211111000000 0 00 000
Q ss_pred c-h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 80 T-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 80 ~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|...
T Consensus 108 ~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 108 EALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred HHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 0 0 012235667899999999999999999999999999995432 33445889999999764
No 154
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=125.58 Aligned_cols=137 Identities=14% Similarity=0.140 Sum_probs=86.7
Q ss_pred CccccceeeEEEEEe--EEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------eEEE
Q 026207 1 MLRLRNVFLLIVKFF--YALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~--~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------~v~~ 60 (241)
||+++|+.. ++. +.++...+ +..| +++|+||||||||||++.|++.+++..|. .+.|
T Consensus 6 ~l~~~~l~~---~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTV---TWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred eEEEEeEEE---EecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEE
Confidence 456677752 221 22343332 3333 89999999999999999999998876432 2445
Q ss_pred EcCCcccC------CCCCC-------------ccc----cccc-h----------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 61 VDTSNEIG------GDGDI-------------PHS----AIGT-A----------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 61 i~~~~e~~------~~~~~-------------~~~----~~~~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+.+..... ..... +.. .... . .....+|++++++..+++++..+|+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 54221110 00000 000 0000 0 0123356678999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
++++|||++++|+.... ..+..|.++|+++|..+
T Consensus 163 llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 99999999999995332 33445889999999876
No 155
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=9.4e-15 Score=123.54 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=52.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... +.|.++|+++|..+ .+..+ ||
T Consensus 145 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~--------~~~~~---~d 213 (241)
T cd03256 145 LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD--------LAREY---AD 213 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CC
Confidence 5667899999999999999999999999999995432 333 34889999999886 55556 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 214 ~v~~ 217 (241)
T cd03256 214 RIVG 217 (241)
T ss_pred EEEE
Confidence 8776
No 156
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.59 E-value=6.9e-15 Score=123.43 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=90.3
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
||+++|+..-.- -+.++...+ +..| +++|+||||||||||++.|++..++..|. ++.
T Consensus 7 ~i~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeC--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 566777752110 112333332 2223 89999999999999999999998776442 122
Q ss_pred EEcCCcccCCCC------C----Cc-c---ccc-cch-----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCC
Q 026207 60 IVDTSNEIGGDG------D----IP-H---SAI-GTA-----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 113 (241)
Q Consensus 60 ~i~~~~e~~~~~------~----~~-~---~~~-~~~-----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~ 113 (241)
|+.+...+.... . .. . ... ... .....+|.+++++..+++++..+|+++++|||
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEI 164 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 222111110000 0 00 0 000 000 01222455779999999999999999999999
Q ss_pred CCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 114 GTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 114 ~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|+.... ... +.|.++|+++|... .+. . ||+++.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~--------~~~-~---~d~i~~ 209 (225)
T PRK10247 165 TSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD--------EIN-H---ADKVIT 209 (225)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH--------HHH-h---CCEEEE
Confidence 9999995433 332 34889999999986 342 4 788776
No 157
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=6.5e-15 Score=127.28 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=93.4
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~ 57 (241)
||+++|+..-.-. ...++..+ .+..| +++|.||||||||||++.+++.+++..|. .
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 7888888632110 01133332 23333 89999999999999999999998876442 1
Q ss_pred EEEEcCCcc--cCCCCCCccc-ccc-------------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 58 VVIVDTSNE--IGGDGDIPHS-AIG-------------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 58 v~~i~~~~e--~~~~~~~~~~-~~~-------------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
+.|+.+... +.... +... ..+ . .. ....+|++++++..+++++..+|++
T Consensus 80 i~~v~q~~~~~~~~~t-v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 80 VGIVFQNPDDQLFAPT-VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred eEEEeeChhhhhcccc-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 223322110 00000 0000 000 0 00 1123456779999999999999999
Q ss_pred EEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|||++++|+.... ...+.|.+++.++|... .+..+ ||++++
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~--------~~~~~---~d~i~~ 209 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD--------LVPVY---ADKVYV 209 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 9999999999995432 33345899999999986 45555 787766
No 158
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.59 E-value=3.7e-15 Score=127.53 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=52.4
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++++..+++++..+|+++++|||++++|+.... ...+ .|.++|+++|... .+.++ ||
T Consensus 152 LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~--------~~~~~---~d 220 (258)
T PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA--------VARLL---AH 220 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH--------HHHHh---cC
Confidence 5567899999999999999999999999999995432 3333 4889999999987 55556 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 221 ~i~~ 224 (258)
T PRK11701 221 RLLV 224 (258)
T ss_pred EEEE
Confidence 8776
No 159
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.59 E-value=7.4e-15 Score=126.22 Aligned_cols=124 Identities=16% Similarity=0.237 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC-C------C--Ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD-G------D--IPH----- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~-~------~--~~~----- 75 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+...+... . . .+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~ 114 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFT 114 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCccccccccc
Confidence 89999999999999999999998876442 12333221111100 0 0 000
Q ss_pred ---c-cccc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CC
Q 026207 76 ---S-AIGT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RG 129 (241)
Q Consensus 76 ---~-~~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g 129 (241)
. .... . .....+|+|++++..+++++..+|+++++|||++++|+.... ...+ .|
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~ 194 (265)
T PRK10253 115 RWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG 194 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 0 0000 0 112335667899999999999999999999999999995432 3333 48
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|... .+..+ ||+++.
T Consensus 195 ~tiii~tH~~~--------~~~~~---~d~i~~ 216 (265)
T PRK10253 195 YTLAAVLHDLN--------QACRY---ASHLIA 216 (265)
T ss_pred CEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 89999999986 45566 787766
No 160
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3e-15 Score=128.93 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=74.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc-cCCCCCC-------------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE-IGGDGDI-------------PH 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e-~~~~~~~-------------~~ 75 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+... ......+ ..
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~ 116 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY 116 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCH
Confidence 89999999999999999999999876442 1222221110 0000000 00
Q ss_pred c----cc-cch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEE
Q 026207 76 S----AI-GTA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVML 132 (241)
Q Consensus 76 ~----~~-~~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~v 132 (241)
. .. ... .....+|++++++..+++++..+|+++++|||++++|+.... .... .|.++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ti 196 (269)
T PRK13648 117 DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI 196 (269)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 0 00 000 012235667899999999999999999999999999995432 3333 48899
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
|+++|...
T Consensus 197 iivtH~~~ 204 (269)
T PRK13648 197 ISITHDLS 204 (269)
T ss_pred EEEecCch
Confidence 99999875
No 161
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=5.7e-15 Score=127.85 Aligned_cols=124 Identities=14% Similarity=0.182 Sum_probs=82.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCc--ccCCCCC-----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSN--EIGGDGD----------- 72 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~--e~~~~~~----------- 72 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+.. .+.....
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~ 114 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF 114 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc
Confidence 89999999999999999999998776432 123333211 0100000
Q ss_pred -Ccccc-----------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC
Q 026207 73 -IPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER 128 (241)
Q Consensus 73 -~~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~ 128 (241)
..... .+. ......+|+|++++..+++++..+|+++++|||++++|+.... ...+.
T Consensus 115 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (280)
T PRK13649 115 GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS 194 (280)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 00000 000 0011235567899999999999999999999999999995432 33345
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|+++|..+ .+..+ ||++++
T Consensus 195 ~~tiiivsH~~~--------~~~~~---~d~i~~ 217 (280)
T PRK13649 195 GMTIVLVTHLMD--------DVANY---ADFVYV 217 (280)
T ss_pred CCEEEEEeccHH--------HHHHh---CCEEEE
Confidence 889999999886 45556 787776
No 162
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.58 E-value=1.7e-14 Score=121.20 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=82.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCCCCC---------cc-c--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGDGDI---------PH-S-- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~~~~---------~~-~-- 76 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+.........+ .. .
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 107 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRS 107 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcch
Confidence 89999999999999999999999876442 12333211111100000 00 0
Q ss_pred ------cccch--------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEE
Q 026207 77 ------AIGTA--------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIG 134 (241)
Q Consensus 77 ------~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~ 134 (241)
..... .....+|++++++..+++++..+|+++++|||++++|+.... +..+ .|.++|+
T Consensus 108 ~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 187 (230)
T TIGR03410 108 RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILL 187 (230)
T ss_pred HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 00000 011225667799999999999999999999999999995432 3333 4889999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+..+ ||+|+.
T Consensus 188 ~sH~~~--------~~~~~---~d~v~~ 204 (230)
T TIGR03410 188 VEQYLD--------FAREL---ADRYYV 204 (230)
T ss_pred EeCCHH--------HHHHh---CCEEEE
Confidence 999986 55556 777776
No 163
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=9.2e-15 Score=125.63 Aligned_cols=124 Identities=12% Similarity=0.134 Sum_probs=83.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC-CC-----Cc---------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD-GD-----IP--------- 74 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~-~~-----~~--------- 74 (241)
+++|+||||||||||++.|++..++..|. .+.|+.+....... .. ..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 118 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALG 118 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccccccccc
Confidence 89999999999999999999998766432 13344322111100 00 00
Q ss_pred ---ccc---cc-chh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CC
Q 026207 75 ---HSA---IG-TAR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RG 129 (241)
Q Consensus 75 ---~~~---~~-~~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g 129 (241)
... .. ... ....+|+|++++..+++++..+|+++|+|||++++|+.... .... .|
T Consensus 119 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~ 198 (265)
T PRK10575 119 RFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG 198 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 000 00 000 12235668899999999999999999999999999995432 3333 48
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ ||+|+.
T Consensus 199 ~tiii~sH~~~--------~i~~~---~d~i~~ 220 (265)
T PRK10575 199 LTVIAVLHDIN--------MAARY---CDYLVA 220 (265)
T ss_pred CEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 89999999886 55666 788766
No 164
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=6.2e-15 Score=137.60 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=93.0
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccc--cCCC-------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSD--EFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~--~~g~------------------- 56 (241)
||+++|+..-.- -+.+++.+ .+..| +++|+||||||||||++.|++.+++ ..|.
T Consensus 5 ~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeC--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 677788753210 11244443 33344 8999999999999999999999875 3222
Q ss_pred eEEEEcCCcccCCC-C--------C-------Ccccc-ccc----h----------hhcCCCCCcccHHHHHHHHHhcCC
Q 026207 57 RVVIVDTSNEIGGD-G--------D-------IPHSA-IGT----A----------RRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 57 ~v~~i~~~~e~~~~-~--------~-------~~~~~-~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.|+.+...+... . . ..... ... . .....+|+|++|+..+++++..+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 13333322111100 0 0 00000 000 0 012335667899999999999999
Q ss_pred cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 106 EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|+|||++++|+.... ...+.|.++|+++|... .+..+ ||+|++
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~--------~~~~~---~d~v~~ 215 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN--------EVKAI---SDTICV 215 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH--------HHHHh---cCEEEE
Confidence 999999999999995432 33456889999999886 44445 666655
No 165
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2.7e-15 Score=130.14 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=84.6
Q ss_pred CccccceeeEEEEEe---EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccC---CC---------------
Q 026207 1 MLRLRNVFLLIVKFF---YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEF---QK--------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~---~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~---g~--------------- 56 (241)
||+++|+.. ++. ..++... .+..| ++.|.||||||||||++.|+|.+.+.. |.
T Consensus 5 ~l~i~~l~~---~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 5 IVEFKHVSF---TYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred eEEEEEEEE---EcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 566777642 221 1133332 33444 899999999999999999999987763 21
Q ss_pred ---eEEEEcCCcc-cCCCCCC------cccccc------------ch----------hhcCCCCCcccHHHHHHHHHhcC
Q 026207 57 ---RVVIVDTSNE-IGGDGDI------PHSAIG------------TA----------RRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 57 ---~v~~i~~~~e-~~~~~~~------~~~~~~------------~~----------~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
++.|+.+... ......+ .....+ .+ .....+|++++++..+++++..+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 1223321110 0000000 000000 00 01223566789999999999999
Q ss_pred CcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCC
Q 026207 105 PEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEW 140 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~ 140 (241)
|+++++|||++++|+.... ...+ .|.++++++|..+
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~ 205 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID 205 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 9999999999999995432 3333 4899999999986
No 166
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=4.9e-15 Score=128.36 Aligned_cols=140 Identities=20% Similarity=0.205 Sum_probs=86.0
Q ss_pred CccccceeeEEEEE----eEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------
Q 026207 1 MLRLRNVFLLIVKF----FYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~----~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------- 56 (241)
||+++|+..-.-.. -..++..+ .+..| +++|+||||||||||++.++|.+++..|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 67777775221100 01244433 23344 89999999999999999999999877443
Q ss_pred --eEEEEcCCcc--cCCCC------C------Ccccc-----------ccc----hhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 57 --RVVIVDTSNE--IGGDG------D------IPHSA-----------IGT----ARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 57 --~v~~i~~~~e--~~~~~------~------~~~~~-----------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.|+.+... +.... . ..... .+. ......+|++++++..+++++..+|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 163 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 1122221110 00000 0 00000 000 0012335667899999999999999
Q ss_pred cEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCC
Q 026207 106 EVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEW 140 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~ 140 (241)
+++++|||++++|+.... ...+ .|.+++.++|..+
T Consensus 164 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 164 ECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 999999999999995432 3333 5899999999986
No 167
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.58 E-value=8.8e-15 Score=138.07 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=89.2
Q ss_pred CccccceeeEEEEEe--EEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccC
Q 026207 1 MLRLRNVFLLIVKFF--YALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIG 68 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~--~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~ 68 (241)
||+++|+.. ++- +.++..++ +..| +++|+||||||||||++.|++.+++..|. ++.|+.+...+.
T Consensus 6 ~l~i~~l~~---~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 6 IYTMNRVSK---VVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEeeEEE---EeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 577777752 221 23444433 3333 89999999999999999999999876443 345554332211
Q ss_pred CC-C---CC--ccc----------------c----------------------------------------c-cchhhcC
Q 026207 69 GD-G---DI--PHS----------------A----------------------------------------I-GTARRMQ 85 (241)
Q Consensus 69 ~~-~---~~--~~~----------------~----------------------------------------~-~~~~~~~ 85 (241)
.. . .+ ... . + .......
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 162 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT 162 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchh
Confidence 10 0 00 000 0 0 0001223
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
.+|+|+++++.+++++..+|+++++|||++++|+.... ...+.+.++|+++|...
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~ 221 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRY 221 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46778999999999999999999999999999996554 22333458999999886
No 168
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=3.4e-15 Score=128.61 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccc-cc-----c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHS-AI-----G 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~-~~-----~ 79 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+.....+... .. +
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 131 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG 131 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcC
Confidence 89999999999999999999999876442 12222211111100000000 00 0
Q ss_pred --------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 80 --------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 80 --------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
. . .....+|+|++++..+++++..+|+++|+|||++++|+.... ... +.|
T Consensus 132 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g 211 (269)
T cd03294 132 VPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 0 0 012235668899999999999999999999999999995432 333 348
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++|..+ .+..+ ||++++
T Consensus 212 ~tiii~tH~~~--------~~~~~---~d~v~~ 233 (269)
T cd03294 212 KTIVFITHDLD--------EALRL---GDRIAI 233 (269)
T ss_pred CEEEEEeCCHH--------HHHHh---cCEEEE
Confidence 89999999876 45566 788776
No 169
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2.9e-15 Score=132.14 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=53.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .....|.++|+++|..+ .+..+ ||+
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~--------~~~~~---adr 245 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME--------HVLEV---ADE 245 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHh---CCE
Confidence 5567899999999999999999999999999995432 33446899999999986 44555 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 246 i~v 248 (320)
T PRK13631 246 VIV 248 (320)
T ss_pred EEE
Confidence 777
No 170
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.58 E-value=1.9e-14 Score=119.27 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=85.5
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-----CC-C
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-----GD-G 71 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-----~~-~ 71 (241)
||+++|+..-.- -..++... .+..| +++|+||||||||||++.+++..++..|. ++++ +.... .. .
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRG--GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT--IKLD-GGDIDDPDVAEACH 76 (207)
T ss_pred EEEEEeEEEEEC--CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEEC-CEeCcchhhHhhcE
Confidence 677888863210 11234433 23333 89999999999999999999998877543 2222 11100 00 0
Q ss_pred CCcc-----------ccc-------cc--------h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCC
Q 026207 72 DIPH-----------SAI-------GT--------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 72 ~~~~-----------~~~-------~~--------~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~ 115 (241)
.+++ ..+ +. . .....+|.+++++..+++++..+|+++++|||++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 156 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTA 156 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 0000 000 00 0 0112355677999999999999999999999999
Q ss_pred HHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 116 EAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 116 ~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
++|+.... +.++.|.+++.++|...
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 157 ALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 99984332 33456899999999875
No 171
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=6.9e-15 Score=126.81 Aligned_cols=113 Identities=20% Similarity=0.273 Sum_probs=74.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCc--ccCCCC------C------Ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSN--EIGGDG------D------IPH 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~--e~~~~~------~------~~~ 75 (241)
+++|.||||||||||++.+++..++..|. ++.|+.+.. .+.... . ...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~ 116 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPP 116 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCH
Confidence 89999999999999999999998876442 123332111 010000 0 000
Q ss_pred cc-----------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEE
Q 026207 76 SA-----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVML 132 (241)
Q Consensus 76 ~~-----------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~v 132 (241)
.. .+. ......+|++++++..+++++..+|+++++|||++++|+.... ...+. +.++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~ti 196 (271)
T PRK13632 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTL 196 (271)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 00 000 0012335667899999999999999999999999999995432 33333 5899
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
|+++|...
T Consensus 197 ii~sH~~~ 204 (271)
T PRK13632 197 ISITHDMD 204 (271)
T ss_pred EEEEechh
Confidence 99999886
No 172
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.58 E-value=6.8e-15 Score=126.69 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=52.8
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+... ....+ .|.++|+++|... .+..+ ||
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~--------~i~~~---~d 220 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR--------LVERF---CQ 220 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH--------HHHHh---CC
Confidence 566789999999999999999999999999999532 23333 4889999999986 55666 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 221 ~i~~ 224 (268)
T PRK10419 221 RVMV 224 (268)
T ss_pred EEEE
Confidence 8876
No 173
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=99.58 E-value=1.5e-14 Score=126.36 Aligned_cols=114 Identities=19% Similarity=0.238 Sum_probs=88.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
.+.++|+||+||||||+++++++.+++. ++.+++++++..|+.... ... .++........+..++..+++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~----~~~---v~~~~~~~~~~~~~~l~~aLR~~ 204 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAA----PNV---VQLRTSDDAISMTRLLKATLRLR 204 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCC----CCE---EEEEecCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999998652 347899999888875321 111 11222222238889999999999
Q ss_pred CcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 105 PEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
||.|+++|+++.+ +..+.++.++||. +++|+|++++.+++.+
T Consensus 205 pD~iivGEiR~~e-a~~~l~a~~tGh~G~~tTiHa~~~~~ai~R 247 (299)
T TIGR02782 205 PDRIIVGEVRGGE-ALDLLKAWNTGHPGGIATIHANNAKAALDR 247 (299)
T ss_pred CCEEEEeccCCHH-HHHHHHHHHcCCCCeEEeeccCCHHHHHHH
Confidence 9999999999886 4556788899997 9999999998887753
No 174
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.57 E-value=4.3e-15 Score=128.25 Aligned_cols=149 Identities=16% Similarity=0.183 Sum_probs=92.3
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhcccc--------CCC-------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDE--------FQK------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~--------~g~------------- 56 (241)
||+++|+..-. . -+.++...+ +..| +++|+||||||||||++.|++.+++. .|.
T Consensus 1 ml~~~nl~~~~-~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVAR-R-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEE-C-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 78888886321 1 123444433 3334 89999999999999999999998764 332
Q ss_pred -----eEEEEcCCcccCCC---------CCCccc---------cccch--------------hhcCCCCCcccHHHHHHH
Q 026207 57 -----RVVIVDTSNEIGGD---------GDIPHS---------AIGTA--------------RRMQVPEPSLQHKVMIEA 99 (241)
Q Consensus 57 -----~v~~i~~~~e~~~~---------~~~~~~---------~~~~~--------------~~~~~~~~~~~~~~~~~~ 99 (241)
.+.|+.+....... ...+.. ..... .....+|++++++..+++
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 01222211110000 000000 00000 012235567799999999
Q ss_pred HHh---------cCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 100 VEN---------HMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 100 ~l~---------~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++. .+|+++++|||++++|+.... ...+. |.++|+++|..+ .+..+ ||++++
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~--------~~~~~---~d~i~~ 227 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN--------LAARH---ADRIAM 227 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 999 499999999999999995432 33333 889999999876 45556 788776
No 175
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=2.1e-14 Score=117.29 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=44.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH------HHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~------~~~~~~g~~vi~t~H~~~ 140 (241)
+|+|++|+..+++++..+|++|++|||++.+||-+. ..-.+..-||+.++|.+.
T Consensus 150 LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq 209 (253)
T COG1117 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ 209 (253)
T ss_pred CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence 577889999999999999999999999999999332 222335789999999884
No 176
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=6.9e-15 Score=127.97 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++++..+++++..+|+++++|||++++|+.... ... ..|.++|+++|..+ .+..+ ||
T Consensus 151 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~--------~~~~~---~d 219 (289)
T PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD--------QVLRI---AD 219 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH--------HHHHh---CC
Confidence 5567899999999999999999999999999995443 233 34889999999886 45556 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 220 ~i~~ 223 (289)
T PRK13645 220 EVIV 223 (289)
T ss_pred EEEE
Confidence 8776
No 177
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.57 E-value=1.3e-14 Score=123.26 Aligned_cols=148 Identities=16% Similarity=0.080 Sum_probs=92.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhcccc-----CCC----------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDE-----FQK---------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~---------------- 56 (241)
||+++|+..-.- -..++... .+..| +++|+||||||||||++.|++.+++. .|.
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 1 AIEIENLNLFYG--EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred CEEEEEEEEEEC--CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 788888863211 01234433 23333 89999999999999999999998764 332
Q ss_pred ----eEEEEcCCcccCCCC-----C--------Ccccc-----------ccch--------hhcCCCCCcccHHHHHHHH
Q 026207 57 ----RVVIVDTSNEIGGDG-----D--------IPHSA-----------IGTA--------RRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 57 ----~v~~i~~~~e~~~~~-----~--------~~~~~-----------~~~~--------~~~~~~~~~~~~~~~~~~~ 100 (241)
.+.|+.+...+.... . ..... .+.. .....+|++++++..++++
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 158 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARA 158 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHH
Confidence 122222111110000 0 00000 0000 0112346678999999999
Q ss_pred HhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 101 ENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+..+|+++++|||++++|+.... ...+ +.++|.++|..+ .+..+ ||++++
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~--------~~~~~---~d~i~~ 215 (247)
T TIGR00972 159 LAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ--------QAARI---SDRTAF 215 (247)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH--------HHHHh---CCEEEE
Confidence 99999999999999999995432 3333 478999999886 55666 888876
No 178
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=8e-15 Score=122.00 Aligned_cols=125 Identities=15% Similarity=0.112 Sum_probs=83.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCcc------cc-
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPH------SA- 77 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~------~~- 77 (241)
.+++|.||||||||||++.+++.+++..|. .+.|+.+...+.....+.. ..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 899999999999999999999998876442 1223322111110000000 00
Q ss_pred -----ccc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCc
Q 026207 78 -----IGT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGV 130 (241)
Q Consensus 78 -----~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~ 130 (241)
... . .....+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (214)
T cd03297 104 RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183 (214)
T ss_pred CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCc
Confidence 000 0 012235667899999999999999999999999999995433 3333 388
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+..+ ||++++
T Consensus 184 tiii~sH~~~--------~~~~~---~d~i~~ 204 (214)
T cd03297 184 PVIFVTHDLS--------EAEYL---ADRIVV 204 (214)
T ss_pred EEEEEecCHH--------HHHHh---cCEEEE
Confidence 9999999986 55566 788776
No 179
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.57 E-value=1.3e-14 Score=124.46 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=52.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ...+ .|.++|+++|... .+..+ ||
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~--------~~~~~---~d 221 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD--------YALRY---CE 221 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CC
Confidence 5667899999999999999999999999999995432 3333 4899999999986 45555 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 222 ~i~~ 225 (262)
T PRK09984 222 RIVA 225 (262)
T ss_pred EEEE
Confidence 7766
No 180
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=99.57 E-value=1.7e-14 Score=127.92 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=89.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.++|+||+||||||+++++++.++++ .+++++++..|+...... +..... .+-........+..++..+++++|
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~--~rivtiEd~~El~l~~~~-~v~l~~-~~~~~~~~~~t~~~ll~~~LR~~p 237 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQ--ERLITIEDTLELVIPHEN-HVRLLY-SKNGAGLGAVTAEHLLQASLRMRP 237 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCC--CCEEEECCCccccCCCCC-EEEEEe-eccccCcCccCHHHHHHHHhcCCC
Confidence 4579999999999999999999999876 788999988887542110 000100 111112235788999999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
|.|+++|+++.+ +..+.++.++|+. +++|+|++++.+++.+
T Consensus 238 D~IivGEiR~~e-a~~~l~a~~tGh~G~ltTiHa~s~~~a~~R 279 (344)
T PRK13851 238 DRILLGEMRDDA-AWAYLSEVVSGHPGSISTIHGANPVQGFKK 279 (344)
T ss_pred CeEEEEeeCcHH-HHHHHHHHHhCCCcEEECCCCCCHHHHHHH
Confidence 999999999886 5556678888997 9999999998877653
No 181
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.57 E-value=5.7e-15 Score=123.91 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=82.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC--C--CCCCcc------------------cc--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG--G--DGDIPH------------------SA-------- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~--~--~~~~~~------------------~~-------- 77 (241)
+++|+||||||||||++.+++..++..|. ++++ +.... . ....+. ..
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~~p~~G~--i~~~-g~~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYPPDSGT--VTVR-GRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEI 126 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceE--EEEC-CEEchhhcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 89999999999999999999998877543 3333 11100 0 000000 00
Q ss_pred ---ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhh
Q 026207 78 ---IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 78 ---~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~ 143 (241)
.+. ......+|.+++++..+++++..+|+++|+|||++++|+.... ...+.|.++|+++|...
T Consensus 127 l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~--- 203 (224)
T cd03220 127 IEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS--- 203 (224)
T ss_pred HHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH---
Confidence 000 0112335667899999999999999999999999999995322 33445789999999986
Q ss_pred hhcCCccccccccccEEEe
Q 026207 144 IIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 144 ~~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ +|+++.
T Consensus 204 -----~~~~~---~d~i~~ 214 (224)
T cd03220 204 -----SIKRL---CDRALV 214 (224)
T ss_pred -----HHHHh---CCEEEE
Confidence 45555 777765
No 182
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=1.8e-14 Score=119.53 Aligned_cols=124 Identities=15% Similarity=0.083 Sum_probs=83.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCC-C--------CCcccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGD-G--------DIPHSA----- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~-~--------~~~~~~----- 77 (241)
+++|.||||||||||++.+++..++..|. .+.|+.+....... . ......
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 105 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAED 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccCccHHH
Confidence 89999999999999999999999876442 13333322111100 0 000000
Q ss_pred ccc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEe
Q 026207 78 IGT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGT 135 (241)
Q Consensus 78 ~~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t 135 (241)
... . .....+|++++++..+++++..+|+++++|||++++|+.... +.. +.|.+++++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 185 (211)
T cd03298 106 RQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV 185 (211)
T ss_pred HHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 000 0 012335667899999999999999999999999999995432 332 358999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ ||+++.
T Consensus 186 sH~~~--------~~~~~---~d~i~~ 201 (211)
T cd03298 186 THQPE--------DAKRL---AQRVVF 201 (211)
T ss_pred ecCHH--------HHHhh---hCEEEE
Confidence 99886 55566 788776
No 183
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.57 E-value=1.3e-14 Score=128.58 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=82.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCc--ccCCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSN--EIGGDGD------------ 72 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~--e~~~~~~------------ 72 (241)
++.|+|+||||||||+++|++.+++..|. ++.|+.+.. .+.....
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~ 128 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY 128 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999999876432 233332221 0110000
Q ss_pred ---Ccccc-----------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH
Q 026207 73 ---IPHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA 126 (241)
Q Consensus 73 ---~~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~ 126 (241)
..... ++. ......+|+|++|++.+++++..+|++||+|||++++|+.... ...
T Consensus 129 ~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 129 HPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 00000 000 0011235668899999999999999999999999999984332 333
Q ss_pred h-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 127 E-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 127 ~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+ .|.++|+++|... .+.++ ||+|++
T Consensus 209 ~~~~~til~iTHdl~--------~~~~~---~dri~v 234 (331)
T PRK15079 209 REMGLSLIFIAHDLA--------VVKHI---SDRVLV 234 (331)
T ss_pred HHcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 3 4899999999997 45555 677665
No 184
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.57 E-value=1.2e-14 Score=123.94 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=51.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++++..+++++..+|+++++|||++++|+.... ... +.|.++|+++|... .+..+ ||
T Consensus 149 LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~--------~~~~~---~d 217 (253)
T TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG--------VARLL---AQ 217 (253)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---cC
Confidence 4557799999999999999999999999999985432 333 34889999999876 44455 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 218 ~~~~ 221 (253)
T TIGR02323 218 RLLV 221 (253)
T ss_pred EEEE
Confidence 7766
No 185
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.57 E-value=4.9e-15 Score=136.83 Aligned_cols=122 Identities=13% Similarity=0.148 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCc-------ccCCCCC-------------Ccccc----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-------EIGGDGD-------------IPHSA---------- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~-------e~~~~~~-------------~~~~~---------- 77 (241)
+++|+||||||||||+++|+|.+++..|. ++++... .+..... .....
T Consensus 52 ivgIiGpNGSGKSTLLkiLaGLl~P~sGe--I~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe 129 (549)
T PRK13545 52 IVGIIGLNGSGKSTLSNLIAGVTMPNKGT--VDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIE 129 (549)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCceE--EEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999887543 2232100 0000000 00000
Q ss_pred -ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhh
Q 026207 78 -IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 78 -~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
.+. ......+|+|++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 130 ~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~----- 204 (549)
T PRK13545 130 FADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS----- 204 (549)
T ss_pred HcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-----
Confidence 000 0122346778899999999999999999999999999995332 33456889999999886
Q ss_pred cCCccccccccccEEEe
Q 026207 146 KNPILSDLIGGVDTVTL 162 (241)
Q Consensus 146 ~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||++++
T Consensus 205 ---~i~~l---~DrIiv 215 (549)
T PRK13545 205 ---QVKSF---CTKALW 215 (549)
T ss_pred ---HHHHh---CCEEEE
Confidence 45555 677665
No 186
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1e-14 Score=136.01 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=93.1
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RV 58 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v 58 (241)
||+++|+..-.- -+.++..+ .+..| +++|+||||||||||++.|++.+++..|. .+
T Consensus 4 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFP--GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEEC--CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 577777753210 11233332 33444 89999999999999999999998776442 13
Q ss_pred EEEcCCcccCCCCCC------cc--cccc---------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 59 VIVDTSNEIGGDGDI------PH--SAIG---------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 59 ~~i~~~~e~~~~~~~------~~--~~~~---------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.|+.+.........+ .. ...+ . ......+|+|++|+..+++++..+|++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV 161 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 333221111100000 00 0000 0 011233567889999999999999999
Q ss_pred EEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|||++++|+.... ...+.|.++|+++|... .+..+ ||+|+.
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~--------~~~~~---~d~i~~ 212 (501)
T PRK11288 162 IAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME--------EIFAL---CDAITV 212 (501)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999999995432 33456899999999876 44455 666655
No 187
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=8.8e-15 Score=124.75 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=52.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|+|++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|..+ .+..+ ||+
T Consensus 150 LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~--------~~~~~---~d~ 217 (253)
T PRK14242 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQ--------QAARV---SDV 217 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 33 34789999999886 55566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 218 v~~ 220 (253)
T PRK14242 218 TAF 220 (253)
T ss_pred EEE
Confidence 776
No 188
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=8.1e-15 Score=129.62 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=52.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++|++++++++..+|++||+|||++++|+.... ... +.|.++|+++|..+ .+..+ +|
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~--------~~~~~---ad 222 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA--------LVAEA---AH 222 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CC
Confidence 5668899999999999999999999999999994332 333 35899999999997 44555 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 223 ri~v 226 (326)
T PRK11022 223 KIIV 226 (326)
T ss_pred EEEE
Confidence 7666
No 189
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.57 E-value=8.9e-15 Score=123.19 Aligned_cols=128 Identities=18% Similarity=0.154 Sum_probs=85.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc---------------CCcccCCCCCCcc----------cccc-
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------TSNEIGGDGDIPH----------SAIG- 79 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~---------------~~~e~~~~~~~~~----------~~~~- 79 (241)
..+++|+||||||||||++.+++.+++..|. ++++ +...+.....+.. ....
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~ 88 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGG--VILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSK 88 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCce--EEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCCH
Confidence 3489999999999999999999999877543 2222 1110000000000 0000
Q ss_pred -----c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEE
Q 026207 80 -----T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVML 132 (241)
Q Consensus 80 -----~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~v 132 (241)
. . .....+|+|++++..+++++..+|+++++|||++++|+.... .... .|.++
T Consensus 89 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~ti 168 (230)
T TIGR01184 89 SERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168 (230)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 0 0 012235667899999999999999999999999999995432 3333 48899
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe-CChH
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEE 166 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~ 166 (241)
|+++|... .+.++ ||+|++ .++.
T Consensus 169 i~~sH~~~--------~~~~~---~d~v~~l~~G~ 192 (230)
T TIGR01184 169 LMVTHDVD--------EALLL---SDRVVMLTNGP 192 (230)
T ss_pred EEEeCCHH--------HHHHh---cCEEEEEeCCc
Confidence 99999886 55666 888887 4433
No 190
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=1.5e-14 Score=116.38 Aligned_cols=109 Identities=16% Similarity=0.277 Sum_probs=76.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCcccc-c-cchhhcCCCCCcccHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHSA-I-GTARRMQVPEPSLQHKVM 96 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 96 (241)
+++|.||||||||||++.+++..++..|. ++++ +..+.. . ...++.. . .....-..+|.+++++..
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~~~G~--i~~~-g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~ 106 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGE--ILID-GVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIA 106 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCE--EEEC-CEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHH
Confidence 89999999999999999999999887554 4444 222110 0 0111110 0 000001117778999999
Q ss_pred HHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 97 IEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 97 ~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+++++..+|+++++|||++++|+.... .. ..+.++++++|...
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~ 156 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLS 156 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHH
Confidence 999999999999999999999985432 22 24688999999886
No 191
>PRK13409 putative ATPase RIL; Provisional
Probab=99.56 E-value=1.3e-14 Score=137.50 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=85.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCCCCc-----------cc-c-------ccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDIP-----------HS-A-------IGT--- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~~~~-----------~~-~-------~~~--- 80 (241)
++.|+||||||||||++.|++.++++.|. ++.|+.+.........+. .. . ++.
T Consensus 367 iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~ 446 (590)
T PRK13409 367 VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL 446 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHH
Confidence 89999999999999999999999877543 234444322211100000 00 0 000
Q ss_pred -hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccc
Q 026207 81 -ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILS 151 (241)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~ 151 (241)
......+|+|++|++.+++++.++|+++++|||++++|+.... .. .+.|.++|+++|... .+.
T Consensus 447 ~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~--------~~~ 518 (590)
T PRK13409 447 LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY--------MID 518 (590)
T ss_pred HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHH
Confidence 0123457788999999999999999999999999999995432 22 235889999999986 445
Q ss_pred cccccccEEEe
Q 026207 152 DLIGGVDTVTL 162 (241)
Q Consensus 152 ~l~~~~d~V~~ 162 (241)
.+ +|+|+.
T Consensus 519 ~~---aDrviv 526 (590)
T PRK13409 519 YI---SDRLMV 526 (590)
T ss_pred Hh---CCEEEE
Confidence 55 777766
No 192
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.56 E-value=5.3e-15 Score=132.26 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=83.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccccc------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHSAI------ 78 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~~~------ 78 (241)
.++.|.||||||||||+++|++.+++..|. .+.|+.+...+.....+. .++
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~-eNi~~~~~~ 98 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTIL-QNTSLGPEL 98 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHH-HHHHHHHHH
Confidence 389999999999999999999999887543 122222111111100000 000
Q ss_pred -c--c----------h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-h
Q 026207 79 -G--T----------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-E 127 (241)
Q Consensus 79 -~--~----------~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~ 127 (241)
+ . . .....+|+|++|++.+++++..+|+++++|||++.+|+.... ... .
T Consensus 99 ~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~ 178 (363)
T TIGR01186 99 LGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178 (363)
T ss_pred cCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0 0 0 012235678899999999999999999999999999995432 232 3
Q ss_pred CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 128 RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 128 ~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.|.|+|+++|..+ .+..+ ||+|++
T Consensus 179 ~~~Tii~vTHd~~--------ea~~~---~drI~v 202 (363)
T TIGR01186 179 LQKTIVFITHDLD--------EAIRI---GDRIVI 202 (363)
T ss_pred cCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 4899999999997 45555 777766
No 193
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.2e-14 Score=123.72 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..|.++|+++|... .+..+ ||+
T Consensus 147 LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~--------~~~~~---~d~ 214 (250)
T PRK14247 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQ--------QAARI---SDY 214 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHH--------HHHHh---cCE
Confidence 4567799999999999999999999999999995432 22 34789999999886 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 215 i~~ 217 (250)
T PRK14247 215 VAF 217 (250)
T ss_pred EEE
Confidence 776
No 194
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.56 E-value=1.8e-14 Score=118.94 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=74.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccc-cc-----c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHS-AI-----G 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~-~~-----~ 79 (241)
+++|+||||||||||++.+++.+++..|. .+.|+.+...+.....+... .. +
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~ 105 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKK 105 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcC
Confidence 89999999999999999999999876443 11222111111000000000 00 0
Q ss_pred ------------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 80 ------------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 80 ------------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
.+ .....+|.+++++..+++++..+|+++++|||++++|+.... ...+.|.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 185 (206)
T TIGR03608 106 LSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185 (206)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 00 012235567799999999999999999999999999995432 3334588
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++++++|...
T Consensus 186 tii~~sh~~~ 195 (206)
T TIGR03608 186 TIIIVTHDPE 195 (206)
T ss_pred EEEEEeCCHH
Confidence 9999999875
No 195
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.56 E-value=4.8e-14 Score=115.74 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=85.5
Q ss_pred CccccceeeEEEEEeEEeeC-cceeec-cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC----------
Q 026207 1 MLRLRNVFLLIVKFFYALYS-INKIIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---------- 68 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~-~~~~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~---------- 68 (241)
||+++|+..-.-. +.+++ ...+.. .+++|.||||||||||++.+++..++..|. ++++ +.++.
T Consensus 1 ~l~~~~l~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~--i~~~-g~~i~~~~~~~~~~~ 75 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGN--IYYK-NCNINNIAKPYCTYI 75 (195)
T ss_pred CeEEEEeeEEECC--cEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEEC-CcccChhhhhhEEec
Confidence 7888888632210 11222 112223 389999999999999999999998877553 3333 11110
Q ss_pred C-C-CCCcc----ccc-------c---c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHh
Q 026207 69 G-D-GDIPH----SAI-------G---T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAE 118 (241)
Q Consensus 69 ~-~-~~~~~----~~~-------~---~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d 118 (241)
. . ...+. ..+ + . . .....+|.+++++..+++++..+|+++++|||++++|
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 0 0 00000 000 0 0 0 0122356678999999999999999999999999999
Q ss_pred HHHHH-------HHHhCCcEEEEeecCCC
Q 026207 119 AHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 119 ~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+.... ...+.|.++++++|..+
T Consensus 156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 84432 23356889999999886
No 196
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.56 E-value=1.7e-14 Score=135.98 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=89.8
Q ss_pred CccccceeeEEEEEe--EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccC
Q 026207 1 MLRLRNVFLLIVKFF--YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIG 68 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~--~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~ 68 (241)
|++++|+.. ++- +.++... .+..| +++|+||||||||||++.|+|.+++..|. ++.|+.+...+.
T Consensus 4 ~i~~~nls~---~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 4 IYTMNRVSK---VVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80 (552)
T ss_pred EEEEeeEEE---ecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCC
Confidence 677888853 221 2345443 33444 89999999999999999999999876442 345554332211
Q ss_pred CC-C----C---C-------------------cccc---------------------------------cc---chhhcC
Q 026207 69 GD-G----D---I-------------------PHSA---------------------------------IG---TARRMQ 85 (241)
Q Consensus 69 ~~-~----~---~-------------------~~~~---------------------------------~~---~~~~~~ 85 (241)
.. . . . +... .+ ......
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 160 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVT 160 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchh
Confidence 10 0 0 0 0000 00 001223
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
.+|+|++++..+++++..+|+++++|||++.+|+.... ...+.+.++|+++|..+
T Consensus 161 ~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~ 219 (552)
T TIGR03719 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRY 219 (552)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46778999999999999999999999999999996554 22334568999999886
No 197
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.56 E-value=7.3e-15 Score=152.96 Aligned_cols=144 Identities=14% Similarity=0.075 Sum_probs=97.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCccc------ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPHS------AIG----- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~~------~~~----- 79 (241)
+++|.||||||||||++.|+|.++|+.|. .+.++.+...+.....+... ..+
T Consensus 958 i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~ 1037 (2272)
T TIGR01257 958 ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEE 1037 (2272)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHH
Confidence 79999999999999999999999887443 11222211111000000000 000
Q ss_pred -------ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEe
Q 026207 80 -------TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGT 135 (241)
Q Consensus 80 -------~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t 135 (241)
.. .....+|+|++++..+++++..+|+++++|||++++|+.... +. ..|.++|.+
T Consensus 1038 ~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIlt 1116 (2272)
T TIGR01257 1038 AQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMS 1116 (2272)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEE
Confidence 00 112346678899999999999999999999999999995443 33 358999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCC
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPP 183 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~ 183 (241)
+|..+ .+..+ +|+|++ .++.....+....+|+++|..
T Consensus 1117 THdmd--------ea~~l---aDrI~iL~~GkL~~~Gs~~~Lk~~~g~g 1154 (2272)
T TIGR01257 1117 THHMD--------EADLL---GDRIAIISQGRLYCSGTPLFLKNCFGTG 1154 (2272)
T ss_pred ECCHH--------HHHHh---CCEEEEEECCEEEEecCHHHHHHhcCCc
Confidence 99997 56666 899887 554443346777888888754
No 198
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.2e-14 Score=132.83 Aligned_cols=137 Identities=18% Similarity=0.238 Sum_probs=93.3
Q ss_pred EEEeEEeeCcceeecc---------EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-------------
Q 026207 12 VKFFYALYSINKIIFD---------FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG------------- 69 (241)
Q Consensus 12 ~r~~~~~~~~~~~~~g---------~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~------------- 69 (241)
++...+.|+.+..+.+ +..|.|.||||||||++.|+|.++|+.|. +.++ +.+...
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~--I~~~-G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE--ILID-GKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCce--EEEC-CEEccCCCHHHHHhCCcEE
Confidence 3333567777666555 79999999999999999999999988553 3333 211100
Q ss_pred ---------C---------CCCccccccc-------------hhhcC----------CCCCcccHHHHHHHHHhcCCcEE
Q 026207 70 ---------D---------GDIPHSAIGT-------------ARRMQ----------VPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 70 ---------~---------~~~~~~~~~~-------------~~~~~----------~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
. +..+....+. ..++. .++.+.+|.+.++.++..++++|
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 0 0000000000 00111 12334588889999999999999
Q ss_pred EEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+|||++.++.... +..+..|+++|..+|..+ ++.++ ||+|++
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~--------Ei~~i---~DritV 217 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD--------EVFEI---ADRITV 217 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH--------HHHHh---cCEEEE
Confidence 99999999888433 367789999999999886 67777 898887
No 199
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.56 E-value=3.6e-14 Score=121.26 Aligned_cols=124 Identities=19% Similarity=0.285 Sum_probs=83.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCCC---------cc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGDI---------PH----- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~~---------~~----- 75 (241)
+++|.||||+|||||++.|++.+++..|. .+.|+.+.........+ ..
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 108 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWA 108 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhcc
Confidence 89999999999999999999998876442 13344322111100000 00
Q ss_pred ----ccccc----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 76 ----SAIGT----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 76 ----~~~~~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
..... .. ....+|++++++..+++++..+|+++++|||++++|+.... +.++.|.
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (256)
T TIGR03873 109 GDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188 (256)
T ss_pred CCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence 00000 00 12235667899999999999999999999999999995432 3344588
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++++|..+ .+..+ ||+|++
T Consensus 189 tiii~sH~~~--------~~~~~---~d~i~~ 209 (256)
T TIGR03873 189 TVVAALHDLN--------LAASY---CDHVVV 209 (256)
T ss_pred EEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999886 55556 788776
No 200
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.56 E-value=8.7e-15 Score=123.57 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=76.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC------C----Cccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG------D----IPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~------~----~~~~~~- 78 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+...+.... . ......
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~ 109 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVI 109 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCHHHHH
Confidence 89999999999999999999998776442 233433221111000 0 000000
Q ss_pred ------cc---------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------GT---------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~~---------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+. ......+|++++++..+++++..+|+++++|||++++|+.... ... .|.
T Consensus 110 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~ 188 (237)
T cd03252 110 EAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGR 188 (237)
T ss_pred HHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCC
Confidence 00 0012346678899999999999999999999999999995432 333 488
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|...
T Consensus 189 tiii~sH~~~ 198 (237)
T cd03252 189 TVIIIAHRLS 198 (237)
T ss_pred EEEEEeCCHH
Confidence 9999999886
No 201
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.55 E-value=1e-14 Score=123.28 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=81.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-----CC--cc---ccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-----DI--PH---SAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-----~~--~~---~~~- 78 (241)
+++|+||||||||||++.|++.+++..|. .+.|+.+...+.... .. .. ...
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 110 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVE 110 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCHHHHH
Confidence 89999999999999999999998877442 123332111110000 00 00 000
Q ss_pred ------cch---------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------GTA---------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~~~---------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+.. .....+|++++++..+++++..+|+++++|||++++|+.... ... .|.
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~ 189 (238)
T cd03249 111 EAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGR 189 (238)
T ss_pred HHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCC
Confidence 000 011235678899999999999999999999999999995433 333 688
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+. . ||+++.
T Consensus 190 ~vi~~sh~~~--------~~~-~---~d~v~~ 209 (238)
T cd03249 190 TTIVIAHRLS--------TIR-N---ADLIAV 209 (238)
T ss_pred EEEEEeCCHH--------HHh-h---CCEEEE
Confidence 9999999886 343 4 788776
No 202
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=1.6e-14 Score=121.22 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=77.1
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----------CCc
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----------DIP 74 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----------~~~ 74 (241)
+..| +++|.||||||||||++.|++.+++..|. .+.|+.+...+.... ...
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~~ 105 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNAT 105 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHhccCCCCC
Confidence 3344 89999999999999999999999876442 133333211110000 000
Q ss_pred cccc-------cc---h------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH
Q 026207 75 HSAI-------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI 125 (241)
Q Consensus 75 ~~~~-------~~---~------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~ 125 (241)
.... +. . .....+|++++++..+++++..+|+++++|||++++|+.... ..
T Consensus 106 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 185 (229)
T cd03254 106 DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL 185 (229)
T ss_pred HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 0000 00 0 012346678899999999999999999999999999985432 33
Q ss_pred HhCCcEEEEeecCCC
Q 026207 126 AERGVMLIGTAHGEW 140 (241)
Q Consensus 126 ~~~g~~vi~t~H~~~ 140 (241)
. .|.++|+++|...
T Consensus 186 ~-~~~tii~~sh~~~ 199 (229)
T cd03254 186 M-KGRTSIIIAHRLS 199 (229)
T ss_pred c-CCCEEEEEecCHH
Confidence 2 4789999999875
No 203
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=99.55 E-value=3.6e-14 Score=124.63 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=87.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
+.++|+|++||||||++++++..+... ++.+++++++..|+... +... ..+. ......+..++..+++++|
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~----~~n~---v~l~-~~~~~~~~~lv~~aLR~~P 216 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCA----AENA---VALH-TSDTVDMARLLKSTMRLRP 216 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccC----CCCE---EEec-cCCCcCHHHHHHHHhCCCC
Confidence 468999999999999999999987311 23689999999887532 1111 0111 1235788899999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
|.|+++|+++.+ +..+.++.++||. .++|+|++++.+++.+
T Consensus 217 D~IivGEiRg~e-a~~~l~a~~tGh~G~itTiHA~s~~~a~~R 258 (323)
T PRK13833 217 DRIIVGEVRDGA-ALTLLKAWNTGHPGGVTTIHSNTAMSALRR 258 (323)
T ss_pred CEEEEeecCCHH-HHHHHHHHcCCCCceEEEECCCCHHHHHHH
Confidence 999999999885 5566788899997 8999999998887753
No 204
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.55 E-value=1.7e-14 Score=116.73 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=76.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCcccccc---chhhcCCCCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIPHSAIG---TARRMQVPEPS 90 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~ 90 (241)
.++.|.||||||||||++.++. ..|. ++.++.+ .+... ...+. .-.....+|.+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q-~~~l~-----~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ-LQFLI-----DVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH-HHHHH-----HcCCCccccCCCcCcCCHH
Confidence 3899999999999999999863 1122 1222221 00000 00000 00123446678
Q ss_pred ccHHHHHHHHHhcC--CcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 91 LQHKVMIEAVENHM--PEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 91 ~~~~~~~~~~l~~~--p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
++++..+++++..+ |+++++|||++.+|+.... ...+.|.++|+++|..+ .+ .. +|+++
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~--------~~-~~---~d~i~ 159 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD--------VL-SS---ADWII 159 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HH-Hh---CCEEE
Confidence 89999999999999 9999999999999995432 33346899999999986 22 24 78877
Q ss_pred e
Q 026207 162 L 162 (241)
Q Consensus 162 ~ 162 (241)
.
T Consensus 160 ~ 160 (176)
T cd03238 160 D 160 (176)
T ss_pred E
Confidence 6
No 205
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=134.90 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=55.1
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||
T Consensus 391 ~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~--------~~~~~---~d 459 (491)
T PRK10982 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP--------ELLGI---TD 459 (491)
T ss_pred cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH--------HHHhh---CC
Confidence 35678899999999999999999999999999995432 34556899999999987 56666 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 460 ~v~~ 463 (491)
T PRK10982 460 RILV 463 (491)
T ss_pred EEEE
Confidence 8876
No 206
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=1.6e-14 Score=123.24 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=51.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|..+ .+..+ +|+
T Consensus 151 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~--------~~~~~---~d~ 218 (254)
T PRK14273 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQ--------QAGRI---SDR 218 (254)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 33 34789999999886 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 219 i~~ 221 (254)
T PRK14273 219 TAF 221 (254)
T ss_pred EEE
Confidence 776
No 207
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.55 E-value=2.3e-14 Score=120.17 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=52.7
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
..+|++++++..+++++..+|+++++|||++++|+.... +..+. .++|+++|..+ .+..+ |
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--------~~~~~---~ 207 (227)
T cd03260 140 LGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ--------QAARV---A 207 (227)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH--------HHHHh---C
Confidence 446668899999999999999999999999999995432 33344 78999999886 45556 7
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+++.
T Consensus 208 d~i~~ 212 (227)
T cd03260 208 DRTAF 212 (227)
T ss_pred CEEEE
Confidence 88776
No 208
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.55 E-value=1.6e-14 Score=127.89 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=52.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++|++.+++++..+|++||+|||++++|..... ... +.|.++|+++|..+ .+..+ +|
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~--------~~~~~---~D 230 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG--------VVAGI---CD 230 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH--------HHHHh---CC
Confidence 4668899999999999999999999999999994432 333 34899999999987 45556 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 231 ri~v 234 (330)
T PRK09473 231 KVLV 234 (330)
T ss_pred EEEE
Confidence 7665
No 209
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.4e-14 Score=123.22 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++++++|... .+..+ +|+
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tili~sH~~~--------~~~~~---~d~ 214 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-ENYTIVIVTHNIG--------QAIRI---ADY 214 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-cCcEEEEEeCCHH--------HHHHh---CCE
Confidence 4557799999999999999999999999999995432 222 3688999999875 44555 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 215 i~~ 217 (250)
T PRK14262 215 IAF 217 (250)
T ss_pred EEE
Confidence 776
No 210
>PRK13764 ATPase; Provisional
Probab=99.54 E-value=6e-14 Score=131.77 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=92.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.++++|||||||||++++++..++.. ++.|.+++++.|+.....+. ++... +.........+++++|
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~-~riV~TiEDp~El~~~~~i~--------q~~~~--~~~~~~~~~~lLR~rP 325 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADM-GKIVKTMESPRDLQVPPEIT--------QYSKL--EGSMEETADILLLVRP 325 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhC-CCEEEEECCCccccCCCcce--------EEeec--cccHHHHHHHHHhhCC
Confidence 4579999999999999999999998754 56677999998885321111 11111 1233455566789999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcCCc----cccccccccEEEe
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNPI----LSDLIGGVDTVTL 162 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~----l~~l~~~~d~V~~ 162 (241)
|++++||++...+...+..+...|+.+++|+|++++.+++.|.. +..+..-+|+|++
T Consensus 326 D~IivGEiRd~Et~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~ 386 (602)
T PRK13764 326 DYTIYDEMRKTEDFKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIF 386 (602)
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEE
Confidence 99999999999887777666677889999999999999887752 1111123898888
No 211
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.2e-14 Score=123.02 Aligned_cols=145 Identities=15% Similarity=0.125 Sum_probs=98.0
Q ss_pred eec-cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccc-ccc
Q 026207 24 IIF-DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHS-AIG 79 (241)
Q Consensus 24 ~~~-g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~-~~~ 79 (241)
.+. |++.|+|++||||||++++++|+..|+.|. ++.|+.+...+..+..+... ..|
T Consensus 21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG 100 (352)
T COG4148 21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYG 100 (352)
T ss_pred CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhh
Confidence 344 799999999999999999999999988432 33343322222111000000 000
Q ss_pred c---------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHH---HH----H-HHHhCCc
Q 026207 80 T---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---AC----R-SIAERGV 130 (241)
Q Consensus 80 ~---------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~---~~----~-~~~~~g~ 130 (241)
. -++-..+|++.+|++++.+++...|+++++|||-+.+|.. ++ . ...+.++
T Consensus 101 ~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~I 180 (352)
T COG4148 101 MWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI 180 (352)
T ss_pred hcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCC
Confidence 0 0123446788999999999999999999999999998872 11 1 2345678
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
.|+.++|..+ ++.++ +|+|++ .++...+.+..+++.++
T Consensus 181 PIlYVSHS~~--------Ev~RL---Ad~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 181 PILYVSHSLD--------EVLRL---ADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred CEEEEecCHH--------HHHhh---hheEEEecCCeEEecCcHHHHhcC
Confidence 8999999997 78888 999888 55443333555555544
No 212
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.2e-14 Score=137.25 Aligned_cols=138 Identities=12% Similarity=0.066 Sum_probs=87.8
Q ss_pred CccccceeeEEEEEeEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCc-ccCC
Q 026207 1 MLRLRNVFLLIVKFFYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-EIGG 69 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~-e~~~ 69 (241)
||.++|+..-. .-+.++..++ +..| .++|+||||||||||++.|+|.++++.|. ++.|+.+.. ....
T Consensus 1 ~i~i~nls~~~--g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRR--GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred CEEEEEEEEEe--CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 78888885221 0123444432 3333 89999999999999999999998877543 222333210 0000
Q ss_pred C--CCCcc------------------------------------c-----------cccc-----hhhcCCCCCcccHHH
Q 026207 70 D--GDIPH------------------------------------S-----------AIGT-----ARRMQVPEPSLQHKV 95 (241)
Q Consensus 70 ~--~~~~~------------------------------------~-----------~~~~-----~~~~~~~~~~~~~~~ 95 (241)
. ..+.+ . .++. ...+..+|+|+++++
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv 158 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL 158 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH
Confidence 0 00000 0 0000 001233567889999
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 96 MIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 96 ~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
.+++++..+|++++||||++++|+.... .....+.+||+++|...
T Consensus 159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~ 207 (638)
T PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRD 207 (638)
T ss_pred HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 9999999999999999999999996554 22344678999999987
No 213
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.54 E-value=2.4e-14 Score=133.41 Aligned_cols=149 Identities=16% Similarity=0.162 Sum_probs=94.2
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccc--cCCC-------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSD--EFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~--~~g~------------------- 56 (241)
||+++|+..-.- -+.++..+ .+..| +++|+||||||||||++.|++.+++ ..|.
T Consensus 1 ~l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 1 LLEMKGIVKTFG--GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred CEEEEeEEEEeC--CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 577788753211 12244443 33444 8999999999999999999999875 3221
Q ss_pred eEEEEcCCcccCCC---------CC--------Ccccc-----------ccc---h--hhcCCCCCcccHHHHHHHHHhc
Q 026207 57 RVVIVDTSNEIGGD---------GD--------IPHSA-----------IGT---A--RRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 57 ~v~~i~~~~e~~~~---------~~--------~~~~~-----------~~~---~--~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
.+.|+.+....... .. ..... .+. . .....+|+|+++++.+++++..
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 23444322111100 00 00000 000 0 1123467788999999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 104 MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++++|||++++|+.... ...+.|.++|+++|... .+.++ ||+|++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~--------~~~~~---~d~i~~ 213 (500)
T TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN--------EVKAV---CDTICV 213 (500)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--------HHHHh---CCEEEE
Confidence 99999999999999995432 33456899999999886 44555 666665
No 214
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=3.6e-14 Score=117.23 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=77.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc---ccCCCeEEEEcCCcccC-------CC-CCCcc-----------ccccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS---DEFQKRVVIVDTSNEIG-------GD-GDIPH-----------SAIGT----- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~---~~~g~~v~~i~~~~e~~-------~~-~~~~~-----------~~~~~----- 80 (241)
+++|+||||||||||++.|++..+ +..|. ++++ +..+. .. ...++ ..+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~--i~i~-g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGD--IHYN-GIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceE--EEEC-CEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc
Confidence 899999999999999999999987 45332 2332 11110 00 00010 00100
Q ss_pred -hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEE-eecCCChhhhhcCCcc
Q 026207 81 -ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIG-TAHGEWLENIIKNPIL 150 (241)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~-t~H~~~~~~~~~~p~l 150 (241)
......+|.+++++..+++++..+|+++++|||++++|+.... +..+. +.++++ +.|..+ .+
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~--------~~ 183 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASD--------EI 183 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHH--------HH
Confidence 0122346778899999999999999999999999999995432 33333 566444 455543 44
Q ss_pred ccccccccEEEe
Q 026207 151 SDLIGGVDTVTL 162 (241)
Q Consensus 151 ~~l~~~~d~V~~ 162 (241)
.++ ||++++
T Consensus 184 ~~~---~d~i~~ 192 (202)
T cd03233 184 YDL---FDKVLV 192 (202)
T ss_pred HHh---CCeEEE
Confidence 555 788776
No 215
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.54 E-value=1.5e-14 Score=129.34 Aligned_cols=125 Identities=18% Similarity=0.167 Sum_probs=82.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC----------------------eEEEEcCCcccCCCCCCccc-ccc----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK----------------------RVVIVDTSNEIGGDGDIPHS-AIG---- 79 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------------~v~~i~~~~e~~~~~~~~~~-~~~---- 79 (241)
.+++|+||||||||||++.|++..+++.|. ++.|+.+...+.....+... ..+
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 389999999999999999999999876442 11222211111000000000 000
Q ss_pred -------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCc
Q 026207 80 -------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGV 130 (241)
Q Consensus 80 -------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~ 130 (241)
. . .....+|+|++|+..+++++..+|+++++|||++++|+.... +... .|.
T Consensus 104 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 183 (354)
T TIGR02142 104 RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI 183 (354)
T ss_pred ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 0 0 011235667899999999999999999999999999995432 3333 489
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+..+ +|++++
T Consensus 184 tiiivtH~~~--------~~~~~---~d~i~~ 204 (354)
T TIGR02142 184 PILYVSHSLQ--------EVLRL---ADRVVV 204 (354)
T ss_pred EEEEEecCHH--------HHHHh---CCEEEE
Confidence 9999999886 45556 777766
No 216
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=6.3e-14 Score=118.76 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=81.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCCCccc------c--cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGDIPHS------A--IG-- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~~~~~------~--~~-- 79 (241)
+++|.||||||||||++.+++..++..|. .+.|+.+...+.....+... . ..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 108 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE 108 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHH
Confidence 89999999999999999999998876442 12233221111100000000 0 00
Q ss_pred ----c----hhh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcE
Q 026207 80 ----T----ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVM 131 (241)
Q Consensus 80 ----~----~~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~ 131 (241)
. ... ...+|++++++..+++++..+|+++++|||++++|+.... .... .|.+
T Consensus 109 ~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~t 188 (242)
T cd03295 109 KIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKT 188 (242)
T ss_pred HHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 0 001 1224557899999999999999999999999999995432 3333 4889
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++|... .+..+ ||+|+.
T Consensus 189 vii~sH~~~--------~~~~~---~d~i~~ 208 (242)
T cd03295 189 IVFVTHDID--------EAFRL---ADRIAI 208 (242)
T ss_pred EEEEecCHH--------HHHHh---CCEEEE
Confidence 999999875 45556 788776
No 217
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=1.5e-14 Score=125.10 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=75.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcc--cCCCCC------------Ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNE--IGGDGD------------IPH 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e--~~~~~~------------~~~ 75 (241)
+++|.||||||||||++.|++..++..|. .+.|+.+... +..... ...
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~ 114 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPR 114 (277)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCH
Confidence 89999999999999999999999877543 1222221110 000000 000
Q ss_pred ccc-cc----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEE
Q 026207 76 SAI-GT----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVML 132 (241)
Q Consensus 76 ~~~-~~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~v 132 (241)
... .. . .....+|++++++..+++++..+|+++|+|||++++|+.... ...+ .|.++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~ti 194 (277)
T PRK13642 115 EEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTV 194 (277)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 000 00 0 012235667799999999999999999999999999995432 3333 48999
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
|.++|..+
T Consensus 195 il~sH~~~ 202 (277)
T PRK13642 195 LSITHDLD 202 (277)
T ss_pred EEEeCCHH
Confidence 99999986
No 218
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.54 E-value=3.4e-14 Score=120.12 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=82.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEc-CCcccCCCCCCc------ccccc----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVD-TSNEIGGDGDIP------HSAIG---- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~-~~~e~~~~~~~~------~~~~~---- 79 (241)
+++|+||||||||||++.|++.+++..|. ++.|+. +...+.....+. ....+
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 128 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA 128 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHH
Confidence 89999999999999999999998776442 122322 111110000000 00000
Q ss_pred -------c-h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEE
Q 026207 80 -------T-A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLI 133 (241)
Q Consensus 80 -------~-~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi 133 (241)
. . .....+|++++++..+++++..+|+++++|||++++|+.... +.. +.|.++|
T Consensus 129 ~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 208 (236)
T cd03267 129 RFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208 (236)
T ss_pred HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 0 0 011235667899999999999999999999999999995433 222 3478999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|... .+..+ ||+++.
T Consensus 209 ivsH~~~--------~~~~~---~d~i~~ 226 (236)
T cd03267 209 LTSHYMK--------DIEAL---ARRVLV 226 (236)
T ss_pred EEecCHH--------HHHHh---CCEEEE
Confidence 9999986 55666 788776
No 219
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.54 E-value=3.4e-14 Score=135.69 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=83.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcc--cCCCCCC-----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNE--IGGDGDI----------- 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e--~~~~~~~----------- 73 (241)
++.|+||||||||||+++|++.+++..|. ++.|+.+... +.....+
T Consensus 352 ~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~ 431 (623)
T PRK10261 352 TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH 431 (623)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc
Confidence 89999999999999999999998766332 2333332210 1000000
Q ss_pred ---cccc-----------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-
Q 026207 74 ---PHSA-----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA- 126 (241)
Q Consensus 74 ---~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~- 126 (241)
.... ++. ......+|+|++|++.+++++..+|++||+|||++++|+.... ...
T Consensus 432 ~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 432 GLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0000 000 0112345668899999999999999999999999999994332 333
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.|.++|+++|..+ .+.++ ||+|++
T Consensus 512 ~~g~tvi~isHdl~--------~v~~~---~dri~v 536 (623)
T PRK10261 512 DFGIAYLFISHDMA--------VVERI---SHRVAV 536 (623)
T ss_pred hcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 34899999999886 55666 788776
No 220
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.54 E-value=8.5e-14 Score=114.49 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=74.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCCCCcc------cccc--c--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDGDIPH------SAIG--T-- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~~~~~------~~~~--~-- 80 (241)
+++|+||||||||||++.+++..++..|. .+.|+.+...+.....+.. .... .
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~ 107 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT 107 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHH
Confidence 89999999999999999999998777442 1223322111100000000 0000 0
Q ss_pred ----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCC
Q 026207 81 ----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGE 139 (241)
Q Consensus 81 ----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~ 139 (241)
. .....+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|.++|..
T Consensus 108 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 108 IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 0 012235667799999999999999999999999999984332 3345688999999976
Q ss_pred C
Q 026207 140 W 140 (241)
Q Consensus 140 ~ 140 (241)
.
T Consensus 188 ~ 188 (198)
T TIGR01189 188 L 188 (198)
T ss_pred c
Confidence 4
No 221
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=3.9e-14 Score=119.66 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=82.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCc---c---ccc-------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIP---H---SAI------- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~---~---~~~------- 78 (241)
.++|.||||||||||++.+++..++..|. .+.++.+.........+. . ...
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~ 106 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEI 106 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHH
Confidence 89999999999999999999998877542 123333221111100000 0 000
Q ss_pred ----c-ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEe
Q 026207 79 ----G-TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGT 135 (241)
Q Consensus 79 ----~-~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t 135 (241)
. .. .....+|++++++..+++++..+|+++++|||++++|+.... ... +.|.+++.+
T Consensus 107 ~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~ 186 (235)
T cd03299 107 ERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV 186 (235)
T ss_pred HHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 0 00 012235678899999999999999999999999999995432 222 248999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+.++ ||+++.
T Consensus 187 tH~~~--------~~~~~---~d~i~~ 202 (235)
T cd03299 187 THDFE--------EAWAL---ADKVAI 202 (235)
T ss_pred ecCHH--------HHHHh---CCEEEE
Confidence 99875 45555 787776
No 222
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=3.7e-14 Score=122.04 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|+|++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|... .+..+ ||+
T Consensus 165 LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~--------~~~~~---~d~ 232 (268)
T PRK14248 165 LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQ--------QALRV---SDR 232 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995433 22 23688999999986 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|+.
T Consensus 233 v~~ 235 (268)
T PRK14248 233 TAF 235 (268)
T ss_pred EEE
Confidence 776
No 223
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.3e-14 Score=122.67 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|... .+..+ ||+
T Consensus 156 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~--------~~~~~---~d~ 223 (259)
T PRK14274 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-EKYTIVIVTHNMQ--------QAARV---SDQ 223 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEEcCHH--------HHHHh---CCE
Confidence 4567899999999999999999999999999995432 222 3688999999876 45566 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 224 i~~ 226 (259)
T PRK14274 224 TAF 226 (259)
T ss_pred EEE
Confidence 776
No 224
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=4.1e-14 Score=114.28 Aligned_cols=114 Identities=21% Similarity=0.272 Sum_probs=79.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC----CCC-------ccc------ccc-------ch--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----GDI-------PHS------AIG-------TA-- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~----~~~-------~~~------~~~-------~~-- 81 (241)
++++.||+|||||||++.+++.+.|..|. +.++ +..+.++ +.+ |.. .++ .+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~--i~l~-~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R 109 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGS--IQLN-GRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR 109 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccce--EEEC-CEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHH
Confidence 89999999999999999999999988433 3333 2111111 000 000 000 00
Q ss_pred ------------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEe
Q 026207 82 ------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGT 135 (241)
Q Consensus 82 ------------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t 135 (241)
..+..+|++++|++.+++++..+|+++++|||.+.+|+-.. ..+..+|+.++..
T Consensus 110 ~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lli 189 (259)
T COG4525 110 REIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI 189 (259)
T ss_pred HHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 12334678999999999999999999999999999999322 2456789999999
Q ss_pred ecCCChhhhh
Q 026207 136 AHGEWLENII 145 (241)
Q Consensus 136 ~H~~~~~~~~ 145 (241)
+|... +.++
T Consensus 190 TH~ie-EAlf 198 (259)
T COG4525 190 THDIE-EALF 198 (259)
T ss_pred eccHH-HHHh
Confidence 99986 4443
No 225
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=2.9e-14 Score=121.48 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=52.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|..+ .+.++ ||+
T Consensus 148 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~--------~~~~~---~d~ 215 (251)
T PRK14249 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQ--------QAARA---SDW 215 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999985432 33 35789999999886 55566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 216 i~~ 218 (251)
T PRK14249 216 TGF 218 (251)
T ss_pred EEE
Confidence 876
No 226
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.54 E-value=4e-14 Score=120.24 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=46.2
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.+|++++++..+++++..+|+++++|||++++|+.... .....|.++|+++|...
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 36778899999999999999999999999999995433 33445789999999875
No 227
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3e-14 Score=136.31 Aligned_cols=124 Identities=15% Similarity=0.220 Sum_probs=84.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCc-c-cCCCCCC--------ccc-------c---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-E-IGGDGDI--------PHS-------A---IGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~-e-~~~~~~~--------~~~-------~---~~~ 80 (241)
.++|+||||||||||++.|++.++++.|. ++.|+.+.. . +...... +.. . ++.
T Consensus 340 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l 419 (638)
T PRK10636 340 RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGF 419 (638)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCC
Confidence 89999999999999999999999876442 455665421 1 1111000 000 0 000
Q ss_pred -----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----HHhCCcEEEEeecCCChhhhhcCCccc
Q 026207 81 -----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNPILS 151 (241)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~~~~g~~vi~t~H~~~~~~~~~~p~l~ 151 (241)
...+..+|+|+++++.++.++..+|+++|+|||++++|+..... ...-+.+||+++|... .+.
T Consensus 420 ~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~--------~~~ 491 (638)
T PRK10636 420 QGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRH--------LLR 491 (638)
T ss_pred ChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHH--------HHH
Confidence 01234467788999999999999999999999999999965431 1222448999999886 555
Q ss_pred cccccccEEEe
Q 026207 152 DLIGGVDTVTL 162 (241)
Q Consensus 152 ~l~~~~d~V~~ 162 (241)
.+ ||+|+.
T Consensus 492 ~~---~d~i~~ 499 (638)
T PRK10636 492 ST---TDDLYL 499 (638)
T ss_pred Hh---CCEEEE
Confidence 56 777766
No 228
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=5.8e-14 Score=124.41 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=52.8
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++|++++++++..+|++||+|||++++|+.... ...+ .|.++|+++|... .+..+ ||
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~--------~v~~~---~d 227 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ--------MLSQW---AD 227 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH--------HHHHh---CC
Confidence 5668899999999999999999999999999994432 3333 4899999999987 55556 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 228 ri~v 231 (330)
T PRK15093 228 KINV 231 (330)
T ss_pred EEEE
Confidence 7766
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.53 E-value=4.1e-14 Score=132.81 Aligned_cols=67 Identities=22% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
..+|+|++|++.+++++.++|+++++|||++++|+.... .... .|.++|+++|... .+..+
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~--------~~~~~--- 223 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS--------IVRKL--- 223 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH--------HHHHh---
Confidence 345678899999999999999999999999999995442 3333 4899999999986 44445
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||+|+.
T Consensus 224 ~dri~~ 229 (529)
T PRK15134 224 ADRVAV 229 (529)
T ss_pred cCEEEE
Confidence 666655
No 230
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.5e-14 Score=134.20 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=85.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCCcc--cCCCCCC---------c---cc-------ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNE--IGGDGDI---------P---HS-------AIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~~e--~~~~~~~---------~---~~-------~~~ 79 (241)
+++|.||||||||||++.|++..++..| .++.|+.+... +.....+ . .. .++
T Consensus 347 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~ 426 (530)
T PRK15064 347 RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLL 426 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcC
Confidence 8999999999999999999999877643 23556653321 1110000 0 00 000
Q ss_pred c-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCChhhhhcCCcc
Q 026207 80 T-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPIL 150 (241)
Q Consensus 80 ~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~~~~~~~~p~l 150 (241)
. ......+|+|++++..+++++..+|+++++|||++++|+.... ...+.+.++|+++|... .+
T Consensus 427 l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~--------~~ 498 (530)
T PRK15064 427 FSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDRE--------FV 498 (530)
T ss_pred CChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHH--------HH
Confidence 0 0123345678899999999999999999999999999996543 22223558999999986 55
Q ss_pred ccccccccEEEe
Q 026207 151 SDLIGGVDTVTL 162 (241)
Q Consensus 151 ~~l~~~~d~V~~ 162 (241)
..+ ||+++.
T Consensus 499 ~~~---~d~i~~ 507 (530)
T PRK15064 499 SSL---ATRIIE 507 (530)
T ss_pred HHh---CCEEEE
Confidence 666 788776
No 231
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=4.9e-14 Score=119.78 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=51.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..|.++|+++|..+ .+.++ +|+
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~--------~~~~~---~d~ 210 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQ--------QGKRV---ADY 210 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHH--------HHHhh---CcE
Confidence 4667899999999999999999999999999995433 22 24889999999886 55566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 211 i~~ 213 (246)
T PRK14269 211 TAF 213 (246)
T ss_pred EEE
Confidence 776
No 232
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.53 E-value=1.7e-14 Score=121.47 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=84.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc----cCCC----------------eEEEEcCCcc--cCCCCC-----------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD----EFQK----------------RVVIVDTSNE--IGGDGD----------- 72 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~----~~g~----------------~v~~i~~~~e--~~~~~~----------- 72 (241)
..+++|.||||||||||++.|++.+++ ..|. .+.|+.+... +.....
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~ 91 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRS 91 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHH
Confidence 348999999999999999999999987 4332 2334432211 000000
Q ss_pred --Ccccc-------------cc-----chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH
Q 026207 73 --IPHSA-------------IG-----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI 125 (241)
Q Consensus 73 --~~~~~-------------~~-----~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~ 125 (241)
..... +. .......+|++++++..+++++..+|+++++|||++++|+.... +.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~ 171 (230)
T TIGR02770 92 LGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171 (230)
T ss_pred cCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 00000 00 00012235667899999999999999999999999999985432 33
Q ss_pred Hh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 126 AE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 126 ~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+ .|.++|+++|..+ .+..+ +|++++
T Consensus 172 ~~~~~~tiii~sH~~~--------~~~~~---~d~i~~ 198 (230)
T TIGR02770 172 RQLFGTGILLITHDLG--------VVARI---ADEVAV 198 (230)
T ss_pred HHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 33 4889999999886 55566 788877
No 233
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=4.1e-14 Score=122.25 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=51.8
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++|+|||++++|+.... ... .+.++|+++|..+ .+..+ ||+
T Consensus 162 LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~--------~~~~~---~d~ 229 (274)
T PRK14265 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-EQYTIIMVTHNMQ--------QASRV---ADW 229 (274)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 333 3688999999986 55566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 230 i~~ 232 (274)
T PRK14265 230 TAF 232 (274)
T ss_pred EEE
Confidence 776
No 234
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.53 E-value=7.1e-14 Score=116.46 Aligned_cols=136 Identities=19% Similarity=0.177 Sum_probs=82.2
Q ss_pred CccccceeeEEEEEeEEeeCccee--ecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEE-------cCCcccCCC
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKI--IFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIV-------DTSNEIGGD 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~--~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i-------~~~~e~~~~ 70 (241)
+|.++||+ ..|.-+.+++.++. ..| -+.|+||||||||||++.+++..+|..+. +..+ +...|+...
T Consensus 31 li~l~~v~--v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~-~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVS--VRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD-VTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceE--EEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCc-eeeeeeeccCCcchHHHHHH
Confidence 36677775 45555555555432 222 59999999999999999999999886221 1111 000000000
Q ss_pred -CC----------------------------Ccc-----ccccc--------------hhhcCCCCCcccHHHHHHHHHh
Q 026207 71 -GD----------------------------IPH-----SAIGT--------------ARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 71 -~~----------------------------~~~-----~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
+. ..+ ..... -+.+..+|.+.++++++++++.
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv 187 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALV 187 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHh
Confidence 00 000 00000 0123445667799999999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHH-------HHHh--CCcEEEEeecCC
Q 026207 103 HMPEVIIVDEIGTEAEAHACR-------SIAE--RGVMLIGTAHGE 139 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~-------~~~~--~g~~vi~t~H~~ 139 (241)
.+|+++|||||.+++|..... .... .+.++++++|..
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~ 233 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch
Confidence 999999999999999995442 2222 255566666655
No 235
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.53 E-value=1.2e-14 Score=124.95 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=81.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcC-------CcccCCCCC-------------Cc-cccc--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDT-------SNEIGGDGD-------------IP-HSAI-------- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~-------~~e~~~~~~-------------~~-~~~~-------- 78 (241)
.++|+||||||||||+++++|.+++..|. +.++. ...+..... .. ....
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl~~p~~G~--I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 129 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSLSPTVGK--VDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIE 129 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCceE--EEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999887553 22221 111110000 00 0000
Q ss_pred --cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhh
Q 026207 79 --GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 79 --~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+. ......+|+|++++..+++++..+|+++++|||++++|+... ....+.|.++|+++|...
T Consensus 130 ~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~----- 204 (264)
T PRK13546 130 FSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG----- 204 (264)
T ss_pred HcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-----
Confidence 00 001233567889999999999999999999999999998532 233456899999999876
Q ss_pred cCCccccccccccEEEe
Q 026207 146 KNPILSDLIGGVDTVTL 162 (241)
Q Consensus 146 ~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|+.
T Consensus 205 ---~i~~~---~d~i~~ 215 (264)
T PRK13546 205 ---QVRQF---CTKIAW 215 (264)
T ss_pred ---HHHHH---cCEEEE
Confidence 44555 676655
No 236
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2e-14 Score=123.00 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... +.. .|.++|+++|... .+.++ ||+
T Consensus 155 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~--------~~~~~---~d~ 222 (258)
T PRK14268 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQ--------QAARI---SDY 222 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHH--------HHHHh---CCE
Confidence 5567899999999999999999999999999995432 232 4789999999886 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 223 i~~ 225 (258)
T PRK14268 223 TGF 225 (258)
T ss_pred EEE
Confidence 776
No 237
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3.3e-14 Score=121.13 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ..+ .+.++|+++|... .+..+ ||+
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~--------~~~~~---~d~ 216 (252)
T PRK14272 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMH--------QAARV---SDT 216 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 233 4688999999886 55556 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 217 i~~ 219 (252)
T PRK14272 217 TSF 219 (252)
T ss_pred EEE
Confidence 776
No 238
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.53 E-value=3.7e-14 Score=135.72 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=46.2
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
..+|+|+++++.+++++..+|+++++|||++.+|+.... .....+.+||+++|...
T Consensus 155 ~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~ 214 (635)
T PRK11147 155 SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRS 214 (635)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 346778899999999999999999999999999996554 22333568999999886
No 239
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=4.9e-14 Score=120.78 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... +.. .+.++|.++|... .+..+ +|+
T Consensus 157 LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~--------~~~~~---~d~ 224 (260)
T PRK10744 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ--------QAARC---SDY 224 (260)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH--------HHHHh---CCE
Confidence 5668899999999999999999999999999995432 332 4678999999876 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 225 i~~ 227 (260)
T PRK10744 225 TAF 227 (260)
T ss_pred EEE
Confidence 776
No 240
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=1e-13 Score=116.85 Aligned_cols=123 Identities=19% Similarity=0.194 Sum_probs=82.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCcccccc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHSAIG------------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~~~~------------ 79 (241)
+++|+||||+|||||++.|++.+++..|. .+.++.+.........+ ...+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~-~~nl~~~~~~~~~~~~~ 106 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV-FENIAFGLRLKKLPKAE 106 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcH-HHHHHHHHHhcCCCHHH
Confidence 89999999999999999999999877442 12222211111000000 00000
Q ss_pred ---c----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEE
Q 026207 80 ---T----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIG 134 (241)
Q Consensus 80 ---~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~ 134 (241)
. .. ....+|.+++++..+++++..+|+++++|||++++|+.... ..++ .|.++|+
T Consensus 107 ~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii 186 (232)
T cd03300 107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186 (232)
T ss_pred HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 0 00 11224557799999999999999999999999999994432 3333 4899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|... .+.++ ||+++.
T Consensus 187 ~sh~~~--------~~~~~---~d~i~~ 203 (232)
T cd03300 187 VTHDQE--------EALTM---SDRIAV 203 (232)
T ss_pred EeCCHH--------HHHHh---cCEEEE
Confidence 999986 55566 788776
No 241
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.53 E-value=3.9e-14 Score=118.75 Aligned_cols=112 Identities=17% Similarity=0.158 Sum_probs=74.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC--------CCCcc--cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD--------GDIPH--SA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~--------~~~~~--~~-- 77 (241)
+++|+||||||||||++.+++..++..|. .+.|+.+...+... ..... ..
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~ 121 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVK 121 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHH
Confidence 89999999999999999999998876442 13333322111000 00000 00
Q ss_pred --------------c--cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 78 --------------I--GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 78 --------------~--~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+ +. ......+|++++++..+++++..+|+++++|||++++|+.... ... .+.
T Consensus 122 ~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~ 200 (226)
T cd03248 122 EAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP-ERR 200 (226)
T ss_pred HHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCC
Confidence 0 00 0012235667899999999999999999999999999985433 322 367
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|...
T Consensus 201 tii~~sh~~~ 210 (226)
T cd03248 201 TVLVIAHRLS 210 (226)
T ss_pred EEEEEECCHH
Confidence 8999999986
No 242
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.53 E-value=2.9e-14 Score=119.52 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=83.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCC--CCC-----------------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGD--GDI----------------- 73 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~--~~~----------------- 73 (241)
..+++|.||||||||||++.+++..++..|. ++.|+.+....... ..+
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~ 85 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRR 85 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccccC
Confidence 3489999999999999999999998876442 24444432111000 000
Q ss_pred cc-cc---ccc-hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcE
Q 026207 74 PH-SA---IGT-AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVM 131 (241)
Q Consensus 74 ~~-~~---~~~-~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~ 131 (241)
+. .. ... .. ....+|.+++++..+++++..+|+++|+|||++++|+.... ...+.|.+
T Consensus 86 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~t 165 (223)
T TIGR03771 86 PCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165 (223)
T ss_pred CcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 00 00 000 00 12235567799999999999999999999999999995432 34456889
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+++|..+ .+.++ ||++++
T Consensus 166 vii~sH~~~--------~~~~~---~d~i~~ 185 (223)
T TIGR03771 166 ILMTTHDLA--------QAMAT---CDRVVL 185 (223)
T ss_pred EEEEeCCHH--------HHHHh---CCEEEE
Confidence 999999886 44555 666654
No 243
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.9e-14 Score=133.21 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=53.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|+|+++++.+++++..+|+++|+|||++++|+.... ...+.|.++|+++|... .+..+ ||+
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~--------~~~~~---~d~ 478 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP--------EIITV---CDR 478 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995332 33456899999999886 55666 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 479 i~~ 481 (510)
T PRK09700 479 IAV 481 (510)
T ss_pred EEE
Confidence 776
No 244
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.53 E-value=3.4e-14 Score=132.78 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=84.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCc---ccCCCCCC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSN---EIGGDGDI------------ 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~---e~~~~~~~------------ 73 (241)
++.|+||||||||||++.|++.+++..|. .+.|+.+.. .+......
T Consensus 291 ~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~ 370 (510)
T PRK15439 291 ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRR 370 (510)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhh
Confidence 89999999999999999999998766332 133443211 00000000
Q ss_pred c----cc-c----------ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH
Q 026207 74 P----HS-A----------IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA 126 (241)
Q Consensus 74 ~----~~-~----------~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~ 126 (241)
. .. . ++. ......+|+|++++..+++++..+|+++|+|||++++|+.... ...
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~ 450 (510)
T PRK15439 371 GFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA 450 (510)
T ss_pred ccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHH
Confidence 0 00 0 000 0112336678899999999999999999999999999994432 334
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.|.++|+++|..+ .+.++ ||++++
T Consensus 451 ~~g~tiIivsHd~~--------~i~~~---~d~i~~ 475 (510)
T PRK15439 451 AQNVAVLFISSDLE--------EIEQM---ADRVLV 475 (510)
T ss_pred hCCCEEEEECCCHH--------HHHHh---CCEEEE
Confidence 46899999999987 66677 888876
No 245
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=6.8e-14 Score=119.28 Aligned_cols=64 Identities=11% Similarity=0.215 Sum_probs=51.2
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|... .+..+ ||+
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~--------~~~~~---~d~ 217 (253)
T PRK14267 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK-KEYTIVLVTHSPA--------QAARV---SDY 217 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-hCCEEEEEECCHH--------HHHhh---CCE
Confidence 4557799999999999999999999999999995432 222 3689999999886 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 218 i~~ 220 (253)
T PRK14267 218 VAF 220 (253)
T ss_pred EEE
Confidence 776
No 246
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.52 E-value=1.6e-14 Score=129.89 Aligned_cols=122 Identities=11% Similarity=0.139 Sum_probs=82.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC---cccC------------CC-C-------CCccc----cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS---NEIG------------GD-G-------DIPHS----AI-- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~---~e~~------------~~-~-------~~~~~----~~-- 78 (241)
+++|.||||||||||+++|++.+++..|. ++++.. ..+. .. . ..++. ++
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~--I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~ 129 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVSRGS--VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAF 129 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcE--EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHH
Confidence 79999999999999999999999887554 444410 0000 00 0 00100 00
Q ss_pred c-------------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H
Q 026207 79 G-------------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S 124 (241)
Q Consensus 79 ~-------------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~ 124 (241)
+ . .. ....+|++++|+..+++++..+|+++++|||++++|+.... .
T Consensus 130 ~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~ 209 (382)
T TIGR03415 130 GLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLE 209 (382)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 0 0 00 11225667899999999999999999999999999995432 3
Q ss_pred HHh-CCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 125 IAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 125 ~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
... .|.++++++|..+ .+..+ +|+|++
T Consensus 210 l~~~~~~TII~iTHdl~--------e~~~l---~DrI~v 237 (382)
T TIGR03415 210 LQAKLNKTIIFVSHDLD--------EALKI---GNRIAI 237 (382)
T ss_pred HHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 333 4899999999987 44555 676665
No 247
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=2.8e-14 Score=132.78 Aligned_cols=113 Identities=16% Similarity=0.250 Sum_probs=81.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCCcccCCCCCCcc-------------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGDGDIPH------------------------- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~~e~~~~~~~~~------------------------- 75 (241)
-+.|+|+|||||||||+.|+|...++.| .++.|+.+.........+..
T Consensus 31 riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~ 110 (530)
T COG0488 31 RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110 (530)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhccc
Confidence 6999999999999999999999987743 35667764443322100000
Q ss_pred ----------------------c-------cccc---hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH
Q 026207 76 ----------------------S-------AIGT---ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR 123 (241)
Q Consensus 76 ----------------------~-------~~~~---~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~ 123 (241)
. .++. ...+..+|+|.+.++.++.++..+||+++||||++.+|..++.
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~ 190 (530)
T COG0488 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIE 190 (530)
T ss_pred chhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHH
Confidence 0 0000 1234556788999999999999999999999999999997776
Q ss_pred H----HHh-CCcEEEEeecCCCh
Q 026207 124 S----IAE-RGVMLIGTAHGEWL 141 (241)
Q Consensus 124 ~----~~~-~g~~vi~t~H~~~~ 141 (241)
. .++ .| ++|+++|....
T Consensus 191 WLe~~L~~~~g-tviiVSHDR~F 212 (530)
T COG0488 191 WLEDYLKRYPG-TVIVVSHDRYF 212 (530)
T ss_pred HHHHHHHhCCC-cEEEEeCCHHH
Confidence 2 222 45 89999998873
No 248
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.52 E-value=3.2e-14 Score=116.25 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=74.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------eEEEEcCCc--ccCCCCC------------C
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------RVVIVDTSN--EIGGDGD------------I 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~v~~i~~~~--e~~~~~~------------~ 73 (241)
+++|+||||||||||++.+++..++..|. .+.|+.+.. .+..... .
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~ 99 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL 99 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHHHHHHHHHHHcCC
Confidence 89999999999999999999998876442 122222111 0000000 0
Q ss_pred ccc----c-------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcE
Q 026207 74 PHS----A-------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVM 131 (241)
Q Consensus 74 ~~~----~-------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~ 131 (241)
... . ++. ......+|++++++..+++++..+|+++++|||++++|+.... ..++.|.+
T Consensus 100 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~t 179 (190)
T TIGR01166 100 SEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179 (190)
T ss_pred CHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCE
Confidence 000 0 000 0012234567799999999999999999999999999995432 34456889
Q ss_pred EEEeecCCC
Q 026207 132 LIGTAHGEW 140 (241)
Q Consensus 132 vi~t~H~~~ 140 (241)
+++++|..+
T Consensus 180 ili~sH~~~ 188 (190)
T TIGR01166 180 VVISTHDVD 188 (190)
T ss_pred EEEEeeccc
Confidence 999999875
No 249
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=7.5e-14 Score=119.44 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|.++|... .+..+ ||+
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tviivsH~~~--------~~~~~---~d~ 216 (258)
T PRK14241 149 LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQ--------QAARV---SDQ 216 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHH--------HHHHh---CCE
Confidence 5567899999999999999999999999999985432 22 24688999999886 45555 777
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 217 i~~ 219 (258)
T PRK14241 217 TAF 219 (258)
T ss_pred EEE
Confidence 765
No 250
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=5.8e-14 Score=120.81 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|..+ .+..+ ||+
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~~~tiiivtH~~~--------~~~~~---~d~ 231 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-QNYTIVIVTHSMQ--------QAARV---SQR 231 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-cCCeEEEEEcCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995432 222 3678999999876 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 232 v~~ 234 (267)
T PRK14235 232 TAF 234 (267)
T ss_pred EEE
Confidence 776
No 251
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1e-13 Score=119.49 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=51.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|... .+..+ ||+
T Consensus 155 LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~--------~~~~~---~d~ 222 (269)
T PRK14259 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQ--------QAVRV---SDM 222 (269)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHH--------HHHHh---cCE
Confidence 5667899999999999999999999999999995432 22 34688999999876 55666 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 223 i~~ 225 (269)
T PRK14259 223 TAF 225 (269)
T ss_pred EEE
Confidence 776
No 252
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.52 E-value=9.2e-14 Score=116.59 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=81.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc---ccCCC---------------eEEEEcCCcccCCC-C-----------CC----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS---DEFQK---------------RVVIVDTSNEIGGD-G-----------DI---- 73 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~---~~~g~---------------~v~~i~~~~e~~~~-~-----------~~---- 73 (241)
+++|+||||||||||++.+++.++ +..|. .+.|+.+...+... . ..
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~ 114 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS 114 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc
Confidence 899999999999999999999987 55332 23333322111100 0 00
Q ss_pred ccc----cc-c-ch----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 74 PHS----AI-G-TA----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 74 ~~~----~~-~-~~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
... .. . .. .....+|.+++++..+++++..+|+++++|||++++|+.... +..+.|.
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~ 194 (226)
T cd03234 115 SDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194 (226)
T ss_pred chHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 000 00 0 00 012235667799999999999999999999999999995432 3344588
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++++|... . .+.++ +|+++.
T Consensus 195 tiii~sh~~~-~------~~~~~---~d~i~~ 216 (226)
T cd03234 195 IVILTIHQPR-S------DLFRL---FDRILL 216 (226)
T ss_pred EEEEEecCCC-H------HHHHh---CCEEEE
Confidence 9999999872 0 45556 788776
No 253
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=4e-14 Score=120.59 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=51.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|..+ .+..+ ||+
T Consensus 149 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~--------~~~~~---~d~ 216 (252)
T PRK14239 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLLVTRSMQ--------QASRI---SDR 216 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-hCCeEEEEECCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 222 3678999999886 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 217 i~~ 219 (252)
T PRK14239 217 TGF 219 (252)
T ss_pred EEE
Confidence 776
No 254
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=6.6e-14 Score=119.27 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ...+ +.++|+++|..+ .+..+ ||+
T Consensus 148 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~--------~~~~~---~d~ 215 (251)
T PRK14270 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ--------QASRV---SDY 215 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH--------HHHHh---cCE
Confidence 5567799999999999999999999999999995432 3333 578999999876 55566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 216 v~~ 218 (251)
T PRK14270 216 TAF 218 (251)
T ss_pred EEE
Confidence 776
No 255
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.52 E-value=9.1e-14 Score=130.18 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=53.7
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
..+|+|+++++.+++++..+|+++++|||++++|+.... .. ++.|.+||+++|... .+.++
T Consensus 167 ~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~--------~~~~~--- 235 (520)
T TIGR03269 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE--------VIEDL--- 235 (520)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH--------HHHHh---
Confidence 345678899999999999999999999999999995443 33 345899999999987 45555
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||+|+.
T Consensus 236 ~d~i~~ 241 (520)
T TIGR03269 236 SDKAIW 241 (520)
T ss_pred cCEEEE
Confidence 677666
No 256
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=2.8e-14 Score=121.49 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=52.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|..+ .+..+ ||+
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~--------~~~~~---~d~ 214 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQ--------QAARV---SDK 214 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995432 33 34789999999886 45566 888
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 215 v~~ 217 (250)
T PRK14245 215 TAF 217 (250)
T ss_pred EEE
Confidence 776
No 257
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.52 E-value=9.6e-14 Score=118.33 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=51.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+ .|.++|+++|..+ .+..+ +|
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~--------~~~~~---~d 215 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG--------FAREF---AD 215 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH--------HHHHh---cC
Confidence 4567799999999999999999999999999985432 3333 4899999999886 44555 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 216 ~i~~ 219 (252)
T TIGR03005 216 RVCF 219 (252)
T ss_pred EEEE
Confidence 7766
No 258
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.52 E-value=5.9e-14 Score=134.06 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=53.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++|++.+++++..+|++||+|||++++|+.... ... +.|.++|+++|... .+..+ ||
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~--------~~~~~---ad 237 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG--------VVAEI---AD 237 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--------HHHHh---CC
Confidence 5668899999999999999999999999999995422 333 34899999999986 55566 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 238 ri~v 241 (623)
T PRK10261 238 RVLV 241 (623)
T ss_pred EEEE
Confidence 8777
No 259
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.52 E-value=9e-14 Score=114.81 Aligned_cols=113 Identities=11% Similarity=0.075 Sum_probs=76.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCC---------CCCCccccc-------cc---h--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGG---------DGDIPHSAI-------GT---A-- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~---------~~~~~~~~~-------~~---~-- 81 (241)
+++|+||||||||||++.+++..++..|. ++.|+.+...+.. ......... +. .
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEI 112 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHh
Confidence 89999999999999999999999887553 2455543321110 000000000 00 0
Q ss_pred ----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCC
Q 026207 82 ----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 82 ----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~ 140 (241)
.....+|.+++++..+++++..+|+++++|||++++|+.... .....|.++|+++|...
T Consensus 113 ~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~ 189 (204)
T cd03250 113 LPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189 (204)
T ss_pred ccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH
Confidence 011335668899999999999999999999999999995322 12234789999999875
No 260
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.52 E-value=2.9e-14 Score=136.77 Aligned_cols=140 Identities=12% Similarity=0.154 Sum_probs=92.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCc-cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIP-HS-- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~-~~-- 76 (241)
.++|+|++|||||||+|.+++...|..|. .|.|+.+..-+... .... .+
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~ 580 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEII 580 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999988553 23333322111100 0000 00
Q ss_pred ---------------cccchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 77 ---------------AIGTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 77 ---------------~~~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
..|+-..+ ..+|+|++|+.++++++.++|.++++||+++.+|.+.-. .....|+|
T Consensus 581 ~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T 660 (709)
T COG2274 581 EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRT 660 (709)
T ss_pred HHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCe
Confidence 00000011 125678899999999999999999999999999995433 22345799
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
+|..+|..+ .+.+ ||+|++ ..+....+++.+++.+.
T Consensus 661 ~I~IaHRl~--------ti~~----adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 661 VIIIAHRLS--------TIRS----ADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred EEEEEccch--------Hhhh----ccEEEEccCCceeccCCHHHHHHh
Confidence 999999886 3443 799888 55544444566666554
No 261
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.51 E-value=7.4e-14 Score=126.06 Aligned_cols=120 Identities=22% Similarity=0.255 Sum_probs=86.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC----------CCCccccc--------------cc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD----------GDIPHSAI--------------GT--- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~----------~~~~~~~~--------------~~--- 80 (241)
+-.|+|+||+|||||++.|.|.+.|+.|. ++++ +.+..-. +.+ +|.+ +.
T Consensus 32 IHaLLGENGAGKSTLm~iL~G~~~P~~Ge--I~v~-G~~v~~~sP~dA~~~GIGMV-hQHF~Lv~~lTV~ENiiLg~e~~ 107 (501)
T COG3845 32 IHALLGENGAGKSTLMKILFGLYQPDSGE--IRVD-GKEVRIKSPRDAIRLGIGMV-HQHFMLVPTLTVAENIILGLEPS 107 (501)
T ss_pred EEEEeccCCCCHHHHHHHHhCcccCCcce--EEEC-CEEeccCCHHHHHHcCCcEE-eeccccccccchhhhhhhcCccc
Confidence 78999999999999999999999999765 5554 3222100 000 0100 00
Q ss_pred ---------h--------h----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHH
Q 026207 81 ---------A--------R----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIA 126 (241)
Q Consensus 81 ---------~--------~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~ 126 (241)
+ . .+.-++-+.+|++-+-.++..+|++||+|||++.+.|..+ +..+
T Consensus 108 ~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~ 187 (501)
T COG3845 108 KGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA 187 (501)
T ss_pred cccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0 1122334569999999999999999999999999988544 3667
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
..|++||..+|-.+ ++..+ ||++.+
T Consensus 188 ~~G~tIi~ITHKL~--------Ev~~i---aDrvTV 212 (501)
T COG3845 188 AEGKTIIFITHKLK--------EVMAI---ADRVTV 212 (501)
T ss_pred HCCCEEEEEeccHH--------HHHHh---hCeeEE
Confidence 78999999999987 66666 787776
No 262
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.51 E-value=1.4e-13 Score=120.80 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=83.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||+||||||+++++++.+++. .+++++++..|+.... +......................+..+++++|
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~--~~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKD--ERIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcc--ccEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 4589999999999999999999999876 5788898777764331 11100000111111235678889999999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhh
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENII 145 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~ 145 (241)
+++++|||++.. ......+.++|+. +++|+|+.+..+.+
T Consensus 220 d~ii~gE~r~~e-~~~~l~a~~~g~~~~i~T~Ha~~~~~~~ 259 (308)
T TIGR02788 220 DRIILGELRGDE-AFDFIRAVNTGHPGSITTLHAGSPEEAF 259 (308)
T ss_pred CeEEEeccCCHH-HHHHHHHHhcCCCeEEEEEeCCCHHHHH
Confidence 999999999865 4445566678886 69999999966654
No 263
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=99.51 E-value=1.7e-13 Score=120.64 Aligned_cols=111 Identities=18% Similarity=0.193 Sum_probs=86.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhc---cccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVL---SDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l---~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
.+.++|+|++||||||++++++..+ ++. .+++++++..|+... +.+. .++. ......+..++..+++
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~--~rivtIEd~~El~~~----~~~~---v~~~-~~~~~~~~~ll~~aLR 217 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPT--ERVFIIEDTGEIQCA----AENY---VQYH-TSIDVNMTALLKTTLR 217 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCC--ceEEEEcCCCccccC----CCCE---EEEe-cCCCCCHHHHHHHHhc
Confidence 3479999999999999999999874 333 689999988887532 1111 0111 1235678899999999
Q ss_pred cCCcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 103 HMPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
++||.|+++|+++.+ +..+.++.++|+. .++|+|++++.+++.+
T Consensus 218 ~~PD~IivGEiR~~E-a~~~l~A~~tGh~G~~tTiHa~s~~~ai~R 262 (319)
T PRK13894 218 MRPDRILVGEVRGPE-ALDLLMAWNTGHEGGAATLHANNAKAGLDR 262 (319)
T ss_pred CCCCEEEEeccCCHH-HHHHHHHHHcCCCceEEEECCCCHHHHHHH
Confidence 999999999999986 5556788899997 8999999998887753
No 264
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.7e-14 Score=122.32 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|..+ .+..+ ||+
T Consensus 168 LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivsH~~~--------~i~~~---~d~ 235 (271)
T PRK14238 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-KDYSIIIVTHNMQ--------QAARI---SDK 235 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-cCCEEEEEEcCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 333 3689999999886 45556 787
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 236 i~~ 238 (271)
T PRK14238 236 TAF 238 (271)
T ss_pred EEE
Confidence 766
No 265
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=7.4e-14 Score=117.62 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=74.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-----CC-----ccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-----DI-----PHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-----~~-----~~~~~- 78 (241)
+++|+||||||||||++.+++..++..|. .+.|+.+...+.... .. .....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~ 109 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVE 109 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCHHHHH
Confidence 89999999999999999999999877442 122332111110000 00 00000
Q ss_pred ------cc---h------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------GT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~~---~------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+. . .....+|.+++++..+++++..+|+++++|||++++|+.... .. ..+.
T Consensus 110 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~ 188 (234)
T cd03251 110 EAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL-MKNR 188 (234)
T ss_pred HHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCC
Confidence 00 0 012235667899999999999999999999999999995432 22 2478
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|...
T Consensus 189 tii~~sh~~~ 198 (234)
T cd03251 189 TTFVIAHRLS 198 (234)
T ss_pred EEEEEecCHH
Confidence 9999999886
No 266
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=8.3e-14 Score=118.54 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=51.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|... .+..+ +|+
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~--------~~~~~---~d~ 214 (250)
T PRK14240 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQ--------QASRI---SDK 214 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995432 22 34789999999875 45556 787
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 215 v~~ 217 (250)
T PRK14240 215 TAF 217 (250)
T ss_pred EEE
Confidence 776
No 267
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=4.6e-14 Score=131.77 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=54.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++|++.+++++..+|+++++|||++++|+.... ..++.|.++|+++|..+ .+.++ ||
T Consensus 405 ~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~--------~~~~~---~d 473 (506)
T PRK13549 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP--------EVLGL---SD 473 (506)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH--------HHHHh---CC
Confidence 35668899999999999999999999999999995432 34456899999999987 56667 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 474 ~v~~ 477 (506)
T PRK13549 474 RVLV 477 (506)
T ss_pred EEEE
Confidence 8776
No 268
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=3.9e-14 Score=119.44 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=75.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----------CCccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----------DIPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----------~~~~~~~- 78 (241)
+++|+||||||||||++.|+|..++..|. .+.|+.+...+.... .......
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~ 108 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVI 108 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCCHHHHH
Confidence 89999999999999999999999877542 122332111111000 0000000
Q ss_pred ------cch---h------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------GTA---R------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~~~---~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+.. . ....+|.+++++..+++++..+|+++++|||++++|+.... ...+ |.
T Consensus 109 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ 187 (236)
T cd03253 109 EAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GR 187 (236)
T ss_pred HHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CC
Confidence 000 0 11246668899999999999999999999999999995432 2333 88
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|..+
T Consensus 188 tiii~sh~~~ 197 (236)
T cd03253 188 TTIVIAHRLS 197 (236)
T ss_pred EEEEEcCCHH
Confidence 9999999886
No 269
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=7.5e-14 Score=118.74 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=51.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|... .+..+ ||+
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~--------~~~~~---~d~ 213 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK-KNYTIVIVTHSMQ--------QARRI---SDR 213 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEecCHH--------HHHHh---CCE
Confidence 5567899999999999999999999999999995432 333 3588999999876 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 214 i~~ 216 (249)
T PRK14253 214 TAF 216 (249)
T ss_pred EEE
Confidence 776
No 270
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.51 E-value=5.6e-14 Score=130.75 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCC-C--------CCcccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGD-G--------DIPHSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~-~--------~~~~~~-- 77 (241)
+++|+||||||||||++.+++.+++..|. .+.|+.+....... . ......
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 105 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF 105 (491)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccc
Confidence 89999999999999999999998776332 13333322111100 0 000000
Q ss_pred cc------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 78 IG------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 78 ~~------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
.. . ......+|+|+++++.+++++..+|+++|+|||++++|+.... ...+.|.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 185 (491)
T PRK10982 106 VDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGC 185 (491)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 00 0 0112335678899999999999999999999999999995432 3445689
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|... .+.++ ||+|++
T Consensus 186 tvii~tH~~~--------~~~~~---~d~i~~ 206 (491)
T PRK10982 186 GIVYISHKME--------EIFQL---CDEITI 206 (491)
T ss_pred EEEEEecCHH--------HHHHh---CCEEEE
Confidence 9999999886 44555 676665
No 271
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=8.1e-14 Score=119.73 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=51.4
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|... .+.++ ||+
T Consensus 152 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tvi~vtH~~~--------~~~~~---~d~ 219 (264)
T PRK14243 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK-EQYTIIIVTHNMQ--------QAARV---SDM 219 (264)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 222 3578999999876 55666 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 220 v~~ 222 (264)
T PRK14243 220 TAF 222 (264)
T ss_pred EEE
Confidence 776
No 272
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.51 E-value=1.9e-13 Score=115.62 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=82.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCccc-cc------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHS-AI------------ 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~-~~------------ 78 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+............. ..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~ 107 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHH
Confidence 89999999999999999999998776442 12333321111100000000 00
Q ss_pred -cc----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEe
Q 026207 79 -GT----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGT 135 (241)
Q Consensus 79 -~~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t 135 (241)
.. .. ....+|.+++++..+++++..+|+++++|||++++|+.... +.... |.+++.+
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~ 187 (237)
T TIGR00968 108 KARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187 (237)
T ss_pred HHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 00 00 11235667799999999999999999999999999995432 22333 7899999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|..+ .+..+ ||+++.
T Consensus 188 sH~~~--------~~~~~---~d~i~~ 203 (237)
T TIGR00968 188 THDQE--------EAMEV---ADRIVV 203 (237)
T ss_pred eCCHH--------HHHhh---cCEEEE
Confidence 99886 55666 788766
No 273
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.51 E-value=5.2e-14 Score=112.35 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=48.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
+|++.+|++.+++++.++|+++++|||++.+|++.. ...++.|.|++.++|.+.
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~ 213 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence 466789999999999999999999999999999644 356778999999999998
No 274
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=6e-14 Score=121.07 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++|+|||++++|+.... ..++ +.++|+++|..+ .+..+ ||+
T Consensus 169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~--------~~~~~---~d~ 236 (272)
T PRK14236 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ--------QAARV---SDY 236 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH--------HHHhh---CCE
Confidence 5567899999999999999999999999999995432 3333 688999999986 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 237 i~~ 239 (272)
T PRK14236 237 TAF 239 (272)
T ss_pred EEE
Confidence 776
No 275
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.50 E-value=5.2e-14 Score=131.25 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=54.0
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++++..+++++..+|+++++|||++++|+.... .....|.++|+++|..+ .+..+ ||
T Consensus 395 ~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~--------~~~~~---~d 463 (501)
T PRK10762 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP--------EVLGM---SD 463 (501)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH--------HHHhh---CC
Confidence 35667899999999999999999999999999995432 34456899999999886 55666 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 464 ~v~~ 467 (501)
T PRK10762 464 RILV 467 (501)
T ss_pred EEEE
Confidence 8776
No 276
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=2.3e-14 Score=119.35 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=87.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC---CCCCCccc----------------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---GDGDIPHS---------------------------- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~---~~~~~~~~---------------------------- 76 (241)
.+.|+|+||||||||++.|++.++|+.|. +.+....... +.+..|..
T Consensus 55 ~vGiiG~NGaGKSTLlkliaGi~~Pt~G~--v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIi 132 (249)
T COG1134 55 RVGIIGHNGAGKSTLLKLIAGIYKPTSGK--VKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEII 132 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCccCCCCce--EEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 69999999999999999999999999665 3333111000 00111110
Q ss_pred ---cccch--hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhh
Q 026207 77 ---AIGTA--RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 77 ---~~~~~--~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~ 144 (241)
.++.+ ..+..+|.+|..|.+++.+...+||++++||+-+.-|+.-. .+..+.+.+++.++|...
T Consensus 133 eFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~---- 208 (249)
T COG1134 133 EFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG---- 208 (249)
T ss_pred HHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH----
Confidence 01111 12445778999999999999999999999999988887322 234456789999999997
Q ss_pred hcCCccccccccccEEEe
Q 026207 145 IKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 145 ~~~p~l~~l~~~~d~V~~ 162 (241)
.+.+. ||+++.
T Consensus 209 ----~I~~~---Cd~~i~ 219 (249)
T COG1134 209 ----AIKQY---CDRAIW 219 (249)
T ss_pred ----HHHHh---cCeeEE
Confidence 67777 999887
No 277
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.50 E-value=1e-13 Score=132.76 Aligned_cols=124 Identities=10% Similarity=0.146 Sum_probs=84.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcc-cCCC-C------C-Cc----c--c-----cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE-IGGD-G------D-IP----H--S-----AI-- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e-~~~~-~------~-~~----~--~-----~~-- 78 (241)
.++|+||||||||||++.|++.++++.|. ++.|+.+... +... . . .. . . .+
T Consensus 347 ~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~ 426 (635)
T PRK11147 347 KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQD 426 (635)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHh
Confidence 89999999999999999999998876442 3456653221 1110 0 0 00 0 0 00
Q ss_pred -cc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH-HhCCcEEEEeecCCChhhhhcCC
Q 026207 79 -GT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-AERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 79 -~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~-~~~g~~vi~t~H~~~~~~~~~~p 148 (241)
+. ...+..+|+|++++..+++++..+|+++|+|||++++|+.... .+ .+.+.++|+++|...
T Consensus 427 ~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~-------- 498 (635)
T PRK11147 427 FLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQ-------- 498 (635)
T ss_pred cCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH--------
Confidence 00 0123446778899999999999999999999999999996543 22 233568999999886
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+++.
T Consensus 499 ~~~~~---~d~i~~ 509 (635)
T PRK11147 499 FVDNT---VTECWI 509 (635)
T ss_pred HHHHh---cCEEEE
Confidence 44555 666665
No 278
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.50 E-value=5e-14 Score=131.92 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=53.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++++..+++++..+|+++++|||++++|+.... ... +.|.++|+++|... .+..+ ||
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~--------~~~~~---~d 496 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD--------FVLDV---CD 496 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH--------HHHHh---CC
Confidence 4567899999999999999999999999999995433 332 34889999999987 55666 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 497 ~i~~ 500 (520)
T TIGR03269 497 RAAL 500 (520)
T ss_pred EEEE
Confidence 8876
No 279
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.50 E-value=1.3e-13 Score=115.17 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=74.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcccCCCCCCcc---------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNEIGGDGDIPH---------SA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e~~~~~~~~~---------~~ 77 (241)
+++|.||||||||||++.|++.+++..|. .+.|+.+...+........ ..
T Consensus 33 ~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~ 112 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPN 112 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccC
Confidence 89999999999999999999998876442 1222221111111000000 00
Q ss_pred cc------c----hh----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 78 IG------T----AR----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 78 ~~------~----~~----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
.. . +. ....+|.+++++..+++++..+|+++++|||++++|+.... ... +.|
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ 192 (220)
T TIGR02982 113 LSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQG 192 (220)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcC
Confidence 00 0 00 11224557799999999999999999999999999995532 233 358
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
.++|+++|..+
T Consensus 193 ~tii~~sh~~~ 203 (220)
T TIGR02982 193 CTILIVTHDNR 203 (220)
T ss_pred CEEEEEeCCHH
Confidence 99999999985
No 280
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.50 E-value=2.9e-14 Score=126.09 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=52.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++|+..+++++..+|+++++|||++++|+.... +.. +.|.++|.++|... .+..+ ||
T Consensus 101 LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~--------e~~~~---~d 169 (325)
T TIGR01187 101 LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE--------EAMTM---SD 169 (325)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CC
Confidence 5667899999999999999999999999999995432 222 34899999999886 45555 77
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 170 ~i~v 173 (325)
T TIGR01187 170 RIAI 173 (325)
T ss_pred EEEE
Confidence 7766
No 281
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.49 E-value=3.8e-14 Score=118.09 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=80.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-C-C-CCCcc----ccc-------cc------------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-G-D-GDIPH----SAI-------GT------------ 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~-~-~~~~~----~~~-------~~------------ 80 (241)
.+++|.||||||||||++.+++..++..|. +..+. +.... . . ...+. ..+ +.
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~-i~~~~-~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 91 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPDEGD-FIGLR-GDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQL 91 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCCCCC-EEEec-CceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 489999999999999999999999888665 22122 11110 0 0 00000 000 00
Q ss_pred -------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H-H--HhCCcEEEEeecCCChhhhhcC
Q 026207 81 -------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-I--AERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 81 -------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~-~--~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
......+|.+++++..+++++..+|+++++|||.+..|+.... . . ...+.++|+++|...
T Consensus 92 ~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~------- 164 (213)
T PRK15177 92 TQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR------- 164 (213)
T ss_pred hChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH-------
Confidence 0012335667899999999999999999999998888884322 1 1 113456888999986
Q ss_pred CccccccccccEEEe
Q 026207 148 PILSDLIGGVDTVTL 162 (241)
Q Consensus 148 p~l~~l~~~~d~V~~ 162 (241)
.+..+ ||++++
T Consensus 165 -~~~~~---~d~i~~ 175 (213)
T PRK15177 165 -LIKEH---CHAFGV 175 (213)
T ss_pred -HHHHh---cCeeEE
Confidence 44555 777666
No 282
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.2e-13 Score=117.55 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=51.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|... .+..+ +|+
T Consensus 148 LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~--------~~~~~---~d~ 215 (251)
T PRK14251 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQ--------QAGRI---SDQ 215 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHH--------HHHhh---cCE
Confidence 4567899999999999999999999999999995432 22 24688999999886 45555 787
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 216 i~~ 218 (251)
T PRK14251 216 TAF 218 (251)
T ss_pred EEE
Confidence 766
No 283
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.49 E-value=1.1e-13 Score=130.65 Aligned_cols=124 Identities=15% Similarity=0.219 Sum_probs=83.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcc-cCCC-C--------C----Ccc-c-----c---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNE-IGGD-G--------D----IPH-S-----A--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e-~~~~-~--------~----~~~-~-----~--- 77 (241)
+++|+||||||||||++.+++.+++..|. ++.|+.+... +... . . ... . .
T Consensus 350 ~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~ 429 (552)
T TIGR03719 350 IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGR 429 (552)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHh
Confidence 89999999999999999999998876442 3556654321 1110 0 0 000 0 0
Q ss_pred ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----HHhCCcEEEEeecCCChhhhhcCC
Q 026207 78 IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 78 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~~~~g~~vi~t~H~~~~~~~~~~p 148 (241)
++. ......+|+|++++..+++++..+|+++++|||++++|+..... ..+.+.++|+++|...
T Consensus 430 ~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~-------- 501 (552)
T TIGR03719 430 FNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRW-------- 501 (552)
T ss_pred CCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHH--------
Confidence 000 01123456788999999999999999999999999999955431 2222347899999886
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|+.
T Consensus 502 ~~~~~---~d~i~~ 512 (552)
T TIGR03719 502 FLDRI---ATHILA 512 (552)
T ss_pred HHHHh---CCEEEE
Confidence 45555 777665
No 284
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.49 E-value=1e-13 Score=130.07 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=53.7
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
.+|+|++|++.+++++..+|+++|+|||++++|+.... ...+ .|.++|+++|... .+..+ |
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~--------~~~~~---~ 493 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH--------VVRAL---C 493 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH--------HHHHh---c
Confidence 45678899999999999999999999999999995432 3333 4889999999886 55566 8
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|++++
T Consensus 494 d~i~~ 498 (529)
T PRK15134 494 HQVIV 498 (529)
T ss_pred CeEEE
Confidence 88877
No 285
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=99.49 E-value=2.5e-13 Score=120.53 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=88.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC--CCCcccHHHHHHHHHhc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV--PEPSLQHKVMIEAVENH 103 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 103 (241)
.+.++|+|++|+||||+++++++.+++. .+++++++..|+.... +.. .....+... ......+..++..++++
T Consensus 178 ~~~ili~G~tGsGKTTll~al~~~i~~~--~riv~iEd~~El~~~~--~~~-~~l~~r~~~~~g~~~~t~~~ll~~aLR~ 252 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSALLALVAPD--ERIVLVEDAAELRPDH--PHV-VRLEARPANVEGAGAVTLTDLVRQALRM 252 (340)
T ss_pred CCeEEEECCCCCCHHHHHHHHHccCCCC--CcEEEECCcceecCCC--CCe-eeEEeccccccCcCccCHHHHHHHHhcc
Confidence 4589999999999999999999999876 6789999888885321 110 000001111 12357889999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
+||.|+++|+++.+. ..+.++.++||. .++|+|++++.+++.+
T Consensus 253 ~PD~IivGEiRg~Ea-~~~l~a~~tGh~G~~tTiHA~s~~~~~~R 296 (340)
T TIGR03819 253 RPDRIVVGEVRGAEV-VDLLAALNTGHDGGAGTLHANSPADVPAR 296 (340)
T ss_pred CCCeEEEeCcCcHHH-HHHHHHHHcCCCceEEeeCCCCHHHHHHH
Confidence 999999999998864 455788899997 8999999998887754
No 286
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.49 E-value=2.1e-13 Score=113.76 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=80.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----C------Cccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----D------IPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----~------~~~~~~- 78 (241)
+++|.||||||||||++.|++..++..|. .+.|+.+...+.... . ......
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~ 111 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERIL 111 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhhcCCCCCCHHHHH
Confidence 89999999999999999999998766442 133333221111000 0 000000
Q ss_pred ------cc---hhh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------GT---ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~~---~~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+. ..+ ...+|++++++..+++++..+|+++++|||++++|+.... ...+ +.
T Consensus 112 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 190 (220)
T cd03245 112 RAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DK 190 (220)
T ss_pred HHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CC
Confidence 00 000 1256778899999999999999999999999999995443 2223 47
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+ .+ ||+++.
T Consensus 191 tii~~sH~~~--------~~-~~---~d~v~~ 210 (220)
T cd03245 191 TLIIITHRPS--------LL-DL---VDRIIV 210 (220)
T ss_pred EEEEEeCCHH--------HH-Hh---CCEEEE
Confidence 8999999986 33 34 777765
No 287
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.2e-13 Score=121.04 Aligned_cols=62 Identities=21% Similarity=0.241 Sum_probs=49.8
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++.++|+++++|||++++|+.... ...+ +.++|+++|..+ .+..+ ||+
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~--------~i~~~---~d~ 268 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ--------QAARI---SDQ 268 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH--------HHHHh---cCE
Confidence 5667899999999999999999999999999995432 3333 578999999886 55566 787
Q ss_pred E
Q 026207 160 V 160 (241)
Q Consensus 160 V 160 (241)
+
T Consensus 269 i 269 (305)
T PRK14264 269 T 269 (305)
T ss_pred E
Confidence 5
No 288
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.49 E-value=5.7e-14 Score=138.66 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=112.4
Q ss_pred eEEEEEeEEeeCcce-ee---------ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------
Q 026207 9 LLIVKFFYALYSINK-II---------FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-------- 70 (241)
Q Consensus 9 ~~~~r~~~~~~~~~~-~~---------~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~-------- 70 (241)
.+.+..+...++..+ .. .....+.|||||||||+++++.|..+++.|. +++. +..+...
T Consensus 564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~--a~i~-g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGE--ALIK-GHDITVSTDFQQVRK 640 (885)
T ss_pred eEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcce--EEEe-cCccccccchhhhhh
Confidence 345555555555433 22 2368999999999999999999999999766 4442 3322211
Q ss_pred --CCCccccc------------------c-------c---------------hhhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 71 --GDIPHSAI------------------G-------T---------------ARRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 71 --~~~~~~~~------------------~-------~---------------~~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.-|+.+. | . ..+...+++|.+.+..++.++.-+|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi 720 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI 720 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE
Confidence 11222100 0 0 0123456778888999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccC
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERK 180 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~ 180 (241)
++|||.++.||.+.+ .+.++|..++.|+|.++ +.+.+ ||++.+ -++...+-+...++|+||
T Consensus 721 ~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe--------E~EaL---CtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 721 LLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME--------EAEAL---CTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--------HHHHH---hhhhheeecCeeEEecChHHHHhhc
Confidence 999999999995544 45556669999999998 67778 999887 444433338889999999
Q ss_pred CCC
Q 026207 181 APP 183 (241)
Q Consensus 181 g~~ 183 (241)
|..
T Consensus 790 G~g 792 (885)
T KOG0059|consen 790 GSG 792 (885)
T ss_pred CCc
Confidence 875
No 289
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.49 E-value=2.5e-13 Score=114.99 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=45.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~ 205 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH
Confidence 6668899999999999999999999999999995432 33446889999999876
No 290
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=7.7e-14 Score=119.00 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=51.2
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ..+ .+.++|+++|... .+..+ +|+
T Consensus 150 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~-~~~tvii~sh~~~--------~~~~~---~d~ 217 (253)
T PRK14261 150 LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK-KEYTVIIVTHNMQ--------QAARV---SDY 217 (253)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-hCceEEEEEcCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995432 333 3578999999876 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 218 v~~ 220 (253)
T PRK14261 218 TGF 220 (253)
T ss_pred EEE
Confidence 766
No 291
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=2e-13 Score=116.32 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ...+ +.++|+++|... .+... ||+
T Consensus 149 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~--------~~~~~---~d~ 216 (252)
T PRK14255 149 LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH--------QASRI---SDK 216 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 2233 578999999886 45555 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|+.
T Consensus 217 i~~ 219 (252)
T PRK14255 217 TAF 219 (252)
T ss_pred EEE
Confidence 776
No 292
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.6e-13 Score=119.25 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=49.7
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|++++++..+++++..+|+++++|||++++|+.... ...+ +.++|+++|... .+..+ +|
T Consensus 180 ~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~--------~i~~~---~d 247 (285)
T PRK14254 180 DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ--------QAARI---SD 247 (285)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--------HHHhh---cC
Confidence 35667899999999999999999999999999995432 2333 478999999886 45556 77
Q ss_pred EE
Q 026207 159 TV 160 (241)
Q Consensus 159 ~V 160 (241)
++
T Consensus 248 ri 249 (285)
T PRK14254 248 KT 249 (285)
T ss_pred EE
Confidence 74
No 293
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=9e-14 Score=120.83 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=51.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++++..+++++..+|+++|+|||++++|+.... ... .+.++|+++|... .+..+ ||
T Consensus 182 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tvIivsH~~~--------~~~~~---~d 249 (286)
T PRK14275 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-GSYTIMIVTHNMQ--------QASRV---SD 249 (286)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH--------HHHHh---CC
Confidence 35667899999999999999999999999999995432 222 3678999999876 45556 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 250 ~i~~ 253 (286)
T PRK14275 250 YTMF 253 (286)
T ss_pred EEEE
Confidence 8776
No 294
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.8e-13 Score=117.83 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=51.2
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..+.++|+++|... .+..+ ||+
T Consensus 164 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~--------~~~~~---~d~ 231 (267)
T PRK14237 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQ--------QAARA---SDY 231 (267)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHH--------HHHHh---cCE
Confidence 5567899999999999999999999999999995432 33 34788999999875 45555 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 232 i~~ 234 (267)
T PRK14237 232 TAF 234 (267)
T ss_pred EEE
Confidence 776
No 295
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.48 E-value=1.5e-13 Score=116.97 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhc-------CCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccc
Q 026207 87 PEPSLQHKVMIEAVENH-------MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSD 152 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~-------~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~ 152 (241)
+|.+++++..+++++.. +|+++++|||++++|+.... ...+.|.++|+++|..+ .+..
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~--------~~~~ 198 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN--------HTLR 198 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--------HHHH
Confidence 56678999999999987 67999999999999995432 33446889999999986 4556
Q ss_pred ccccccEEEe
Q 026207 153 LIGGVDTVTL 162 (241)
Q Consensus 153 l~~~~d~V~~ 162 (241)
+ ||++++
T Consensus 199 ~---~d~i~~ 205 (248)
T PRK03695 199 H---ADRVWL 205 (248)
T ss_pred h---CCEEEE
Confidence 6 787776
No 296
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.48 E-value=1.7e-13 Score=126.23 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=56.3
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HH-HHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RS-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~-~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
.+|+|++|+++++.++..+|++||.|||++.+|+... +. ..+.|.++|.++|... .+.++ |
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~--------Vva~~---a 222 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG--------VVAEL---A 222 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH--------HHHHh---c
Confidence 4678999999999999999999999999999999432 22 2467999999999997 77888 9
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+|+.
T Consensus 223 Drv~V 227 (539)
T COG1123 223 DRVVV 227 (539)
T ss_pred CeEEE
Confidence 99887
No 297
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2.3e-13 Score=116.56 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=50.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|..... +.. .+.++|+++|..+ .+..+ ||+
T Consensus 154 LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiilvsh~~~--------~~~~~---~d~ 221 (257)
T PRK14246 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-NEIAIVIVSHNPQ--------QVARV---ADY 221 (257)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCcEEEEEECCHH--------HHHHh---CCE
Confidence 3556789999999999999999999999999995432 232 3689999999986 44555 777
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 222 v~~ 224 (257)
T PRK14246 222 VAF 224 (257)
T ss_pred EEE
Confidence 665
No 298
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.48 E-value=1.6e-13 Score=129.48 Aligned_cols=124 Identities=14% Similarity=0.213 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCc-ccCCC-C--------C----Ccc-c-----c---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-EIGGD-G--------D----IPH-S-----A--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~-e~~~~-~--------~----~~~-~-----~--- 77 (241)
++.|+||||||||||++.|++.+++..|. ++.|+.+.. .+... . . ... . .
T Consensus 352 ~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~ 431 (556)
T PRK11819 352 IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGR 431 (556)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHh
Confidence 89999999999999999999998876442 345555332 11110 0 0 000 0 0
Q ss_pred ccc-----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----HHhCCcEEEEeecCCChhhhhcCC
Q 026207 78 IGT-----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 78 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~~~~g~~vi~t~H~~~~~~~~~~p 148 (241)
++. ......+|+|++++..+++++..+|+++++|||++++|+..... ..+...++|+++|...
T Consensus 432 ~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~-------- 503 (556)
T PRK11819 432 FNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRW-------- 503 (556)
T ss_pred CCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHH--------
Confidence 000 01233466788999999999999999999999999999955431 1222237889999886
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|+.
T Consensus 504 ~~~~~---~d~i~~ 514 (556)
T PRK11819 504 FLDRI---ATHILA 514 (556)
T ss_pred HHHHh---CCEEEE
Confidence 45555 777665
No 299
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=3e-13 Score=116.10 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=51.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... +. ..+.++|+++|..+ .+..+ ||+
T Consensus 150 LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~--------~i~~~---~d~ 217 (261)
T PRK14263 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQ--------QAIRV---ADT 217 (261)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHH--------HHHHh---CCE
Confidence 5668899999999999999999999999999995432 33 34688999999886 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
|++
T Consensus 218 v~~ 220 (261)
T PRK14263 218 TAF 220 (261)
T ss_pred EEE
Confidence 776
No 300
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.48 E-value=9.2e-14 Score=129.54 Aligned_cols=66 Identities=23% Similarity=0.212 Sum_probs=54.6
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||
T Consensus 403 ~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~--------~~~~~---~d 471 (500)
T TIGR02633 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA--------EVLGL---SD 471 (500)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH--------HHHHh---CC
Confidence 35667899999999999999999999999999995432 34456899999999987 56667 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
++++
T Consensus 472 ~v~~ 475 (500)
T TIGR02633 472 RVLV 475 (500)
T ss_pred EEEE
Confidence 8876
No 301
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.48 E-value=3.8e-13 Score=113.94 Aligned_cols=119 Identities=15% Similarity=0.170 Sum_probs=87.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCC---------------CccccccchhhcCCCCCccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD---------------IPHSAIGTARRMQVPEPSLQ 92 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 92 (241)
.+.|.|++||||||+.+.++++..++.|. ++++ +.++..... .+.... .+.-..+|++++
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~--i~f~-g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~--~ryPhelSGGQr 115 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGE--ILFE-GKDITKLSKEERRERVLELLEKVGLPEEFL--YRYPHELSGGQR 115 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCce--EEEc-CcchhhcchhHHHHHHHHHHHHhCCCHHHh--hcCCcccCchhh
Confidence 69999999999999999999999998665 5555 333211000 000001 122344678999
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 93 HKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 93 ~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+..+++++..+|++++.|||.+.+|..... .....|.+.+..+|..+ .++++ +|+|..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~--------vv~~i---sdri~V 182 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS--------VVRYI---SDRIAV 182 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH--------hhhhh---cccEEE
Confidence 9999999999999999999999999983222 22345899999999998 77888 888776
No 302
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.47 E-value=1.6e-13 Score=115.42 Aligned_cols=119 Identities=15% Similarity=0.219 Sum_probs=95.4
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
...|++++.|++||||||.+.++.+.-.......+++|+++.|+.... +.-+ ..+-++.-....+..++...+++
T Consensus 125 ~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~h---~~CI--vTQREvGvDTesw~~AlkNtlRQ 199 (375)
T COG5008 125 AKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHKH---KRCI--VTQREVGVDTESWEVALKNTLRQ 199 (375)
T ss_pred ccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhcc---ccee--EEeeeeccchHHHHHHHHHHHhc
Confidence 456799999999999999999999988777667899999998874321 0001 11222222356889999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
.||+|++.|+++.+..+.+...+++||.+++|.|+++..+++.+
T Consensus 200 apDvI~IGEvRsretMeyAi~fAeTGHLcmaTLHAN~anQaleR 243 (375)
T COG5008 200 APDVILIGEVRSRETMEYAIQFAETGHLCMATLHANNANQALER 243 (375)
T ss_pred CCCeEEEeecccHhHHHHHHHHHhcCceEEEEeccCCchHHHHH
Confidence 99999999999999888888888999999999999997776653
No 303
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.47 E-value=3e-13 Score=115.18 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=45.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|...
T Consensus 152 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 6678899999999999999999999999999995432 33446889999999875
No 304
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.47 E-value=8e-13 Score=114.27 Aligned_cols=65 Identities=23% Similarity=0.383 Sum_probs=54.4
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHH-HhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++||++++.++..+|++||-|||++.+|.... ... .+.|.++|..+|... .+.++ ||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~--------vva~~---aD 222 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG--------VVAEI---AD 222 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---cc
Confidence 577899999999999999999999999999999322 222 357999999999998 66777 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|.+
T Consensus 223 ri~V 226 (316)
T COG0444 223 RVAV 226 (316)
T ss_pred eEEE
Confidence 8776
No 305
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=2.3e-13 Score=116.69 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=52.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... ..|.++|+++|... .+..+ ||
T Consensus 151 LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~--------~i~~~---~d 219 (261)
T PRK14258 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH--------QVSRL---SD 219 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH--------HHHHh---cC
Confidence 5667899999999999999999999999999995432 222 34889999999987 56666 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 220 ~i~~ 223 (261)
T PRK14258 220 FTAF 223 (261)
T ss_pred EEEE
Confidence 8877
No 306
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.47 E-value=1.8e-13 Score=118.67 Aligned_cols=113 Identities=10% Similarity=-0.060 Sum_probs=76.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC------C---Ccccc-c------cchh----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG------D---IPHSA-I------GTAR---- 82 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~------~---~~~~~-~------~~~~---- 82 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+.... . ..... . +...
T Consensus 65 ~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~ 144 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITK 144 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHh
Confidence 89999999999999999999999887553 244555332211100 0 00000 0 0000
Q ss_pred -----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H----HHhCCcEEEEeecCCC
Q 026207 83 -----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S----IAERGVMLIGTAHGEW 140 (241)
Q Consensus 83 -----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~----~~~~g~~vi~t~H~~~ 140 (241)
....+|++++++..+++++..+|+++|+|||++++|+.... . ....+.++|+++|...
T Consensus 145 ~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~ 220 (282)
T cd03291 145 FPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKME 220 (282)
T ss_pred ccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChH
Confidence 01246778899999999999999999999999999985432 1 1234788999999875
No 307
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=2.6e-13 Score=116.25 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=51.4
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ... .+.++|+++|..+ .+.++ ||+
T Consensus 151 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~--------~i~~~---~d~ 218 (259)
T PRK14260 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-SELTIAIVTHNMQ--------QATRV---SDF 218 (259)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--------HHHHh---cCe
Confidence 5567899999999999999999999999999985432 233 3689999999886 55666 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 219 i~~ 221 (259)
T PRK14260 219 TAF 221 (259)
T ss_pred EEE
Confidence 776
No 308
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1e-13 Score=119.89 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=51.4
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... ...+ +.++|+++|... .+..+ +|+
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~--------~~~~~---~dr 231 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA--------QAARI---SDR 231 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH--------HHHHh---CCE
Confidence 5667899999999999999999999999999995432 2333 578999999886 55666 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 232 i~~ 234 (276)
T PRK14271 232 AAL 234 (276)
T ss_pred EEE
Confidence 776
No 309
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.5e-13 Score=108.96 Aligned_cols=136 Identities=20% Similarity=0.139 Sum_probs=84.7
Q ss_pred CccccceeeEEEEEeEEeeCcceee---ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc-CCcccCCC------
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKII---FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD-TSNEIGGD------ 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~---~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~-~~~e~~~~------ 70 (241)
|++.+|+. ..|.-+.+|...+.. ...+.|.||||||||||+|.++|++.|+.|. +++. ++.....+
T Consensus 2 ~L~a~~L~--~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~--v~~~~~~i~~~~~~~~~~l 77 (209)
T COG4133 2 MLEAENLS--CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGE--VYWQGEPIQNVRESYHQAL 77 (209)
T ss_pred cchhhhhh--hccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCe--EEecCCCCccchhhHHHHH
Confidence 34444443 334444555555432 2389999999999999999999999999665 4444 11100000
Q ss_pred CCCccc-----------c-------ccc---------------h--h--hcCCCCCcccHHHHHHHHHhcCCcEEEEcCC
Q 026207 71 GDIPHS-----------A-------IGT---------------A--R--RMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 113 (241)
Q Consensus 71 ~~~~~~-----------~-------~~~---------------~--~--~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~ 113 (241)
...-|+ + .+. . . ....+|.+++.+++++++....+++.|+|||
T Consensus 78 ~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred HHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 000000 0 000 0 0 1122455678889999999999999999999
Q ss_pred CCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 114 GTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 114 ~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.+.+|.+... .-..+|-.|+.|+|..-
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l 191 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Confidence 9999985433 22345667888888774
No 310
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=2.1e-13 Score=116.01 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=50.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... .. ..+.++++++|... .+... +|+
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~--------~~~~~---~~~ 214 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQ--------QATRV---SKY 214 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEECCHH--------HHHhh---cCE
Confidence 5667899999999999999999999999999995432 23 34789999999875 45555 777
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 215 i~~ 217 (250)
T PRK14266 215 TSF 217 (250)
T ss_pred EEE
Confidence 654
No 311
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.46 E-value=3.9e-13 Score=111.25 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=75.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC---------Ccccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD---------IPHSA--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~---------~~~~~--- 77 (241)
+++|.||||||||||++.|++..++..|. .+.|+.+...+..... .....
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~ 115 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYG 115 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhcccCCCCHHHHHH
Confidence 89999999999999999999998776442 2333332211110000 00000
Q ss_pred -ccchhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCC
Q 026207 78 -IGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~ 140 (241)
.........+|++++++..+++++..+|+++++|||++++|+.... .....|.++|.++|...
T Consensus 116 ~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~ 185 (207)
T cd03369 116 ALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLR 185 (207)
T ss_pred HhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 0000122345667899999999999999999999999999995433 11134789999999875
No 312
>PLN03211 ABC transporter G-25; Provisional
Probab=99.46 E-value=1.6e-13 Score=131.59 Aligned_cols=125 Identities=19% Similarity=0.261 Sum_probs=83.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc--CC--------------CeEEEEcCCcccCCCCCC------------cc----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE--FQ--------------KRVVIVDTSNEIGGDGDI------------PH---- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~--~g--------------~~v~~i~~~~e~~~~~~~------------~~---- 75 (241)
+++|.||||||||||++.|++...+. .| .++.|+.+...+.....+ +.
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~ 175 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCH
Confidence 89999999999999999999998653 12 124455432211110000 00
Q ss_pred cc-----------ccch---------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC
Q 026207 76 SA-----------IGTA---------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER 128 (241)
Q Consensus 76 ~~-----------~~~~---------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~ 128 (241)
.. ++.. ......|+|++++..++.++..+|+++++|||++++|..... ..++.
T Consensus 176 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~ 255 (659)
T PLN03211 176 QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255 (659)
T ss_pred HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 00 0000 001236778899999999999999999999999999995432 33446
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|.++|..+ . .+.++ +|++++
T Consensus 256 g~TvI~~sH~~~-~------~i~~~---~D~iil 279 (659)
T PLN03211 256 GKTIVTSMHQPS-S------RVYQM---FDSVLV 279 (659)
T ss_pred CCEEEEEecCCC-H------HHHHh---hceEEE
Confidence 899999999986 1 23455 677766
No 313
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.45 E-value=2.1e-13 Score=116.67 Aligned_cols=113 Identities=13% Similarity=0.032 Sum_probs=75.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----CCccc-----cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----DIPHS-----AI-- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----~~~~~-----~~-- 78 (241)
+++|+|+||||||||++.|++.+++..|. .+.|+.+...+.... ..+.. ..
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~ 128 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWE 128 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHH
Confidence 89999999999999999999998876442 123333221111000 00000 00
Q ss_pred -----cch---h------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEE
Q 026207 79 -----GTA---R------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVML 132 (241)
Q Consensus 79 -----~~~---~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~v 132 (241)
+.. . ....+|.+++++..+++++..+|+++++|||++++|+.... .....+.++
T Consensus 129 ~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~ti 208 (257)
T cd03288 129 ALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTV 208 (257)
T ss_pred HHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEE
Confidence 000 0 01235667899999999999999999999999999995433 112347899
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
|+++|..+
T Consensus 209 ii~sh~~~ 216 (257)
T cd03288 209 VTIAHRVS 216 (257)
T ss_pred EEEecChH
Confidence 99999986
No 314
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.45 E-value=4.5e-13 Score=111.75 Aligned_cols=55 Identities=7% Similarity=0.096 Sum_probs=45.6
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---------HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---------~~~~~g~~vi~t~H~~~ 140 (241)
.+|++++++..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 140 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~ 203 (218)
T cd03290 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ 203 (218)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 35667899999999999999999999999999995321 23345789999999986
No 315
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=6.6e-13 Score=116.59 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=90.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.++++|++|+||||++++++..+++. .+++++++..|+......+.+...+ .-...+........+.++++++||.
T Consensus 145 siii~G~t~sGKTt~lnall~~Ip~~--~rivtIEdt~E~~~~~~n~~~l~~r--~~~~~~~~v~~~dll~aalR~rPd~ 220 (312)
T COG0630 145 SIIICGGTASGKTTLLNALLDFIPPE--ERIVTIEDTPELKLPHENWVQLVTR--EGESGSSEVSLEDLLRAALRQRPDY 220 (312)
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCch--hcEEEEeccccccCCCCCEEEEEec--CCCCCccccCHHHHHHHHHhcCCCe
Confidence 69999999999999999999999988 7999999998886441111111111 0011134579999999999999999
Q ss_pred EEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 108 IIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 108 lilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
||++|+++.+ +....++..+||..++|.|+.+.+.++.+
T Consensus 221 IivgEvrg~e-~~~~~~a~~tGh~~isT~ha~s~~~~~~r 259 (312)
T COG0630 221 IIVGELRGRE-AFVLFQAMQTGHGTISTIHADSPELVLDR 259 (312)
T ss_pred EEEeeeecHH-HHHHHHHHhcCCCceeEEecCCHHHHHHH
Confidence 9999999886 56677888999999999999998777654
No 316
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.44 E-value=2e-13 Score=118.00 Aligned_cols=78 Identities=8% Similarity=0.069 Sum_probs=55.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 160 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V 160 (241)
+|.+++++..+++++..+|+++++|||++.+|+.... .....++++|+++|..+ .+. . ||+|
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~--------~i~-~---~dri 206 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIE--------AML-E---CQRF 206 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHH--------HHH-h---CCEE
Confidence 6678899999999999999999999999999995432 11234789999999875 222 2 7887
Q ss_pred Ee-CChHHHHHHHHHhh
Q 026207 161 TL-GDEEARARRCQKSI 176 (241)
Q Consensus 161 ~~-~~~~~~~~~~~~~~ 176 (241)
+. .++.....+.++.+
T Consensus 207 ~vl~~G~i~~~g~~~~l 223 (275)
T cd03289 207 LVIEENKVRQYDSIQKL 223 (275)
T ss_pred EEecCCeEeecCCHHHH
Confidence 76 44433222344444
No 317
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.44 E-value=1.3e-13 Score=133.56 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=88.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----------CCccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----------DIPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----------~~~~~~~- 78 (241)
.++|+||+|||||||++.++|.+.|..|. .+.|+.+...+.... ......+
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~ 586 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLV 586 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHH
Confidence 79999999999999999999999888553 223333221111000 0000000
Q ss_pred -----------------cchh----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEE
Q 026207 79 -----------------GTAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLI 133 (241)
Q Consensus 79 -----------------~~~~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi 133 (241)
|... +-..+|+|++|+..+++++..+|+++++|||++.+|..... ...+.++|+|
T Consensus 587 ~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~I 666 (710)
T TIGR03796 587 RACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCI 666 (710)
T ss_pred HHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEE
Confidence 0000 01225667899999999999999999999999999995433 2334689999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
.++|..+ .+. . ||+|+. .++.....+..+++.
T Consensus 667 iitHrl~--------~i~-~---~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 667 IVAHRLS--------TIR-D---CDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred EEecCHH--------HHH-h---CCEEEEEeCCEEEEecCHHHHH
Confidence 9999886 222 2 788887 444332224444443
No 318
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.44 E-value=8e-13 Score=121.89 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=86.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC------------------CCCCcccccc----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG------------------DGDIPHSAIG---------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~------------------~~~~~~~~~~---------- 79 (241)
.+.|.|++|||||||++.++++..|+.| .+.+......... ....|+..++
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~P~~G-~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLPPSSG-SIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 6999999999999999999999998743 3333221100000 0001111000
Q ss_pred ----c---------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H-HH
Q 026207 80 ----T---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S-IA 126 (241)
Q Consensus 80 ----~---------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~-~~ 126 (241)
. .++...+|+|++|+..+++++..+|++||+|||.+.+|+.... . -.
T Consensus 398 ~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~ 477 (539)
T COG1123 398 GGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477 (539)
T ss_pred cccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH
Confidence 0 0112346778899999999999999999999999999994332 2 23
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.|.+.++.+|... .++++ ||+|.+
T Consensus 478 e~g~t~lfISHDl~--------vV~~i---~drv~v 502 (539)
T COG1123 478 ELGLTYLFISHDLA--------VVRYI---ADRVAV 502 (539)
T ss_pred HhCCEEEEEeCCHH--------HHHhh---CceEEE
Confidence 45999999999998 88888 999987
No 319
>PLN03073 ABC transporter F family; Provisional
Probab=99.44 E-value=3.6e-13 Score=130.05 Aligned_cols=124 Identities=16% Similarity=0.246 Sum_probs=84.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCc-c-cCCC-C-C------Ccc---c-------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSN-E-IGGD-G-D------IPH---S-------AIGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~-e-~~~~-~-~------~~~---~-------~~~~ 80 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+.. + .... . . .+. . .++.
T Consensus 537 ~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl 616 (718)
T PLN03073 537 RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 616 (718)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCC
Confidence 89999999999999999999999877442 344555321 0 0000 0 0 000 0 0000
Q ss_pred -----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H-HHhCCcEEEEeecCCChhhhhcCCccc
Q 026207 81 -----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-IAERGVMLIGTAHGEWLENIIKNPILS 151 (241)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~-~~~~g~~vi~t~H~~~~~~~~~~p~l~ 151 (241)
......+|+|++++..+++++..+|+++++|||++++|+.... . ..+.+.++|+++|... .+.
T Consensus 617 ~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~--------~i~ 688 (718)
T PLN03073 617 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEH--------LIS 688 (718)
T ss_pred ChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH--------HHH
Confidence 0123446778999999999999999999999999999995443 2 2222348999999886 556
Q ss_pred cccccccEEEe
Q 026207 152 DLIGGVDTVTL 162 (241)
Q Consensus 152 ~l~~~~d~V~~ 162 (241)
.+ ||+++.
T Consensus 689 ~~---~drv~~ 696 (718)
T PLN03073 689 GS---VDELWV 696 (718)
T ss_pred Hh---CCEEEE
Confidence 66 788776
No 320
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.44 E-value=2.9e-13 Score=115.76 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=82.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEE----------EEcCCcccCC-----------------C-CCCccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSNEIGG-----------------D-GDIPHS--- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~----------~i~~~~e~~~-----------------~-~~~~~~--- 76 (241)
++.|.||||||||||++.+++..+++.|. +. .++ +.++.. . ...+..
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~-I~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 105 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKPNLGK-FDDPPDWDEILDEFR-GSELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKG 105 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCCCce-Eeeccccchhhhhcc-CchhhhhhHHhhhcccceeeecchhccCchHHHH
Confidence 89999999999999999999999888554 32 122 111100 0 000000
Q ss_pred c----ccc----------h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHH
Q 026207 77 A----IGT----------A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSI 125 (241)
Q Consensus 77 ~----~~~----------~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~ 125 (241)
. +.. . .....+|.+++++..+++++..+|+++++|||++++|+... ...
T Consensus 106 ~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l 185 (255)
T cd03236 106 KVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL 185 (255)
T ss_pred HHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 0 000 0 01122455779999999999999999999999999999532 234
Q ss_pred HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 126 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 126 ~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++.|+++|+++|... .+..+ ||+|+.
T Consensus 186 ~~~~~tIIiiSHd~~--------~~~~~---ad~i~~ 211 (255)
T cd03236 186 AEDDNYVLVVEHDLA--------VLDYL---SDYIHC 211 (255)
T ss_pred HhcCCEEEEEECCHH--------HHHHh---CCEEEE
Confidence 446899999999986 45555 777765
No 321
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.2e-13 Score=120.67 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=52.8
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 160 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V 160 (241)
+|+|++++..+++++..+|+++++|||++++|+.... .....++++|+++|... .+.++ ||+|
T Consensus 226 LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~--------~i~~~---~Dri 294 (329)
T PRK14257 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMA--------QAQRI---SDET 294 (329)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEE
Confidence 5567899999999999999999999999999995432 11234689999999987 56666 8888
Q ss_pred Ee
Q 026207 161 TL 162 (241)
Q Consensus 161 ~~ 162 (241)
++
T Consensus 295 iv 296 (329)
T PRK14257 295 VF 296 (329)
T ss_pred EE
Confidence 87
No 322
>PLN03073 ABC transporter F family; Provisional
Probab=99.44 E-value=5.7e-13 Score=128.73 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=47.0
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~ 140 (241)
..+|+|++++..+++++..+|+++++|||++++|+.... .....+.++|+++|...
T Consensus 343 ~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~ 402 (718)
T PLN03073 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHARE 402 (718)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 346778899999999999999999999999999996554 23344789999999886
No 323
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.43 E-value=5.4e-13 Score=124.08 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=51.0
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCC-cEEEEeecCCChhhhhcCCcccc-cccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERG-VMLIGTAHGEWLENIIKNPILSD-LIGG 156 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g-~~vi~t~H~~~~~~~~~~p~l~~-l~~~ 156 (241)
.+|+|++++..+++++..+|+++++|||++++|+.... ...+.| .++|+++|..+ .+.. +
T Consensus 401 ~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~--------~~~~~~--- 469 (490)
T PRK10938 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE--------DAPACI--- 469 (490)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh--------hhhhhh---
Confidence 35667899999999999999999999999999995443 333344 46999999986 4443 4
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
+|++++
T Consensus 470 ~d~v~~ 475 (490)
T PRK10938 470 THRLEF 475 (490)
T ss_pred heeEEE
Confidence 677776
No 324
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.43 E-value=9.6e-13 Score=126.48 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=84.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------eEEEEcCCcccCCCC-----CC---------c---cccccc-h-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------RVVIVDTSNEIGGDG-----DI---------P---HSAIGT-A- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------~v~~i~~~~e~~~~~-----~~---------~---~~~~~~-~- 81 (241)
.++|+||||||||||++.+++..++..|. ++.++.+...+.... .. + ...... .
T Consensus 480 ~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~ 559 (659)
T TIGR00954 480 HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILD 559 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHH
Confidence 79999999999999999999998876442 355555332111100 00 0 000000 0
Q ss_pred --------hh----------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCC
Q 026207 82 --------RR----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGE 139 (241)
Q Consensus 82 --------~~----------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~ 139 (241)
.+ ...+|+|++|+..+++++.++|+++++|||++++|+.... ...+.|.++|+++|..
T Consensus 560 ~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~ 639 (659)
T TIGR00954 560 NVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRK 639 (659)
T ss_pred HcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCch
Confidence 00 1346778999999999999999999999999999996443 2234588999999998
Q ss_pred ChhhhhcCCccccccccccEEEe
Q 026207 140 WLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 140 ~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+ .+ +. ||+++.
T Consensus 640 ~--------~~-~~---~d~il~ 650 (659)
T TIGR00954 640 S--------LW-KY---HEYLLY 650 (659)
T ss_pred H--------HH-Hh---CCEEEE
Confidence 6 22 33 788776
No 325
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.43 E-value=2.6e-13 Score=131.02 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=81.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------C--Cccccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------D--IPHSAIGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~--~~~~~~~~ 80 (241)
.++|+||+|||||||++.+++.+.|..|. .+.++.+...+.... . .....+..
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~ 560 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWE 560 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHH
Confidence 79999999999999999999999988553 122332221111000 0 00000000
Q ss_pred h------------------hhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEE
Q 026207 81 A------------------RRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIG 134 (241)
Q Consensus 81 ~------------------~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~ 134 (241)
+ ..+ ..+|+|++|+..+++++..+|+++++|||++.+|+.... ...+.+.|+|+
T Consensus 561 al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~Ii 640 (686)
T TIGR03797 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIV 640 (686)
T ss_pred HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEE
Confidence 0 001 125667899999999999999999999999999995433 22333689999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|..+ .+. . +|+|+.
T Consensus 641 ItHr~~--------~i~-~---~D~Iiv 656 (686)
T TIGR03797 641 IAHRLS--------TIR-N---ADRIYV 656 (686)
T ss_pred EecChH--------HHH-c---CCEEEE
Confidence 999875 332 3 688877
No 326
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.43 E-value=2.9e-13 Score=116.40 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=78.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------------------CCCccccc------c--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------------------GDIPHSAI------G-- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------------------~~~~~~~~------~-- 79 (241)
+++|.|-+|||||||++++.+++.|+.|. +.++ +.++... ...|+... |
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept~G~--ilv~-g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPTRGE--ILVD-GKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCCCce--EEEC-CcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 69999999999999999999999998665 4444 2222100 01111100 0
Q ss_pred ------------------------ch-hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHH
Q 026207 80 ------------------------TA-RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIA 126 (241)
Q Consensus 80 ------------------------~~-~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~ 126 (241)
+. .+...+|++++|++.+++++..+|+++++||+++.+||... ..-+
T Consensus 133 v~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~ 212 (386)
T COG4175 133 VQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212 (386)
T ss_pred ecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHH
Confidence 00 12334678899999999999999999999999999999322 2234
Q ss_pred hCCcEEEEeecCCC
Q 026207 127 ERGVMLIGTAHGEW 140 (241)
Q Consensus 127 ~~g~~vi~t~H~~~ 140 (241)
+..+|+++.+|..+
T Consensus 213 ~l~KTIvFitHDLd 226 (386)
T COG4175 213 KLKKTIVFITHDLD 226 (386)
T ss_pred HhCCeEEEEecCHH
Confidence 45789999999987
No 327
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.43 E-value=6.8e-13 Score=110.79 Aligned_cols=112 Identities=11% Similarity=0.116 Sum_probs=74.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC---------CCcccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG---------DIPHSA--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~---------~~~~~~--- 77 (241)
+++|.||||||||||++.|++..++..|. .+.|+.+...+.... ......
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~ 111 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQ 111 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhCcCCCCCHHHHHH
Confidence 89999999999999999999998877442 123333221111000 000000
Q ss_pred ----ccc---h------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcE
Q 026207 78 ----IGT---A------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVM 131 (241)
Q Consensus 78 ----~~~---~------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~ 131 (241)
.+. . .....+|.+++++..+++++..+|+++++|||++++|+.... .. ..+.+
T Consensus 112 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~t 190 (221)
T cd03244 112 ALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA-FKDCT 190 (221)
T ss_pred HHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCCE
Confidence 000 0 012335667899999999999999999999999999995433 22 24678
Q ss_pred EEEeecCCC
Q 026207 132 LIGTAHGEW 140 (241)
Q Consensus 132 vi~t~H~~~ 140 (241)
+|.++|...
T Consensus 191 ii~~sh~~~ 199 (221)
T cd03244 191 VLTIAHRLD 199 (221)
T ss_pred EEEEeCCHH
Confidence 999999875
No 328
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1.4e-12 Score=111.03 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=51.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... .. ..|.++|+++|... .+.++ ||+
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~--------~~~~~---~d~ 217 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMK--------QAKKV---SDR 217 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHH--------HHHhh---cCE
Confidence 4557799999999999999999999999999994332 33 34789999999886 45566 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 218 i~~ 220 (251)
T PRK14244 218 VAF 220 (251)
T ss_pred EEE
Confidence 776
No 329
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.3e-13 Score=126.66 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC-CCCcccc-----------------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD-GDIPHSA----------------------------- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~-~~~~~~~----------------------------- 77 (241)
++++.||+|+||||++..+.+.+.|..|. +.+| +..+..- ....+..
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~PtsG~--IllD-G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e 572 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPTSGR--ILLD-GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDE 572 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCCe--EEEC-CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHH
Confidence 79999999999999999999999999654 4444 3222110 0000000
Q ss_pred -------------------ccchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHH---HHHHH---hC
Q 026207 78 -------------------IGTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CRSIA---ER 128 (241)
Q Consensus 78 -------------------~~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~---~~~~~---~~ 128 (241)
.|+...+ ..+|+|++||.++++|+..+|.++||||.++.+|++. +.++. ..
T Consensus 573 ~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 573 EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ 652 (716)
T ss_pred HHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence 0000001 1256678999999999999999999999999999942 22332 34
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+.|++...|-.+ .+++ +|.|++
T Consensus 653 ~rTVlvIAHRLS--------TV~~----Ad~Ivv 674 (716)
T KOG0058|consen 653 GRTVLVIAHRLS--------TVRH----ADQIVV 674 (716)
T ss_pred CCeEEEEehhhh--------Hhhh----ccEEEE
Confidence 789999999987 5555 577776
No 330
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.42 E-value=2.7e-13 Score=128.53 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-----CC--cc----cc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-----DI--PH----SA- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-----~~--~~----~~- 77 (241)
.++|+||+|||||||++.++|.++|..|. .+.|+++...+.... .. +. ..
T Consensus 371 ~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i 450 (582)
T PRK11176 371 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHH
Confidence 79999999999999999999999887443 123333221111000 00 00 00
Q ss_pred ------cc-----------chhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCc
Q 026207 78 ------IG-----------TARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGV 130 (241)
Q Consensus 78 ------~~-----------~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~ 130 (241)
.+ .-..+ ..+|+|++|+..+++++..+|+++++|||++.+|+.... .....++
T Consensus 451 ~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~ 530 (582)
T PRK11176 451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530 (582)
T ss_pred HHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCC
Confidence 00 00001 125667899999999999999999999999999995433 1123478
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe-CCh
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDE 165 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~ 165 (241)
|+|.++|..+ .+ +. ||+|+. .++
T Consensus 531 tvI~VtHr~~--------~~-~~---~D~Ii~l~~g 554 (582)
T PRK11176 531 TSLVIAHRLS--------TI-EK---ADEILVVEDG 554 (582)
T ss_pred EEEEEecchH--------HH-Hh---CCEEEEEECC
Confidence 9999999885 22 33 788887 443
No 331
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.42 E-value=4.8e-13 Score=127.02 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=80.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCcc---cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIPH---SA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~~---~~-- 77 (241)
.++|+||+|||||||++.+++.+ |..|. .+.|+++...+.... ..+. ..
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~ 456 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQ 456 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHH
Confidence 79999999999999999999999 66443 233443322111100 0000 00
Q ss_pred -----------c-----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ |....+ ..+|+|++||..+++++..+|+++++|||++.+|.+... .....+.|
T Consensus 457 ~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~T 536 (588)
T PRK11174 457 QALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQT 536 (588)
T ss_pred HHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 0 000011 125667899999999999999999999999999995443 11235789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|..+|..+ .+.+ +|.|+.
T Consensus 537 vIiItHrl~--------~i~~----aD~Iiv 555 (588)
T PRK11174 537 TLMVTHQLE--------DLAQ----WDQIWV 555 (588)
T ss_pred EEEEecChH--------HHHh----CCEEEE
Confidence 999999885 3322 688777
No 332
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=2.7e-12 Score=109.44 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=51.2
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|++++++..+++++..+|+++++|||++++|+.... +.. .+.++|+++|... .+..+ ||+
T Consensus 149 LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiiivsH~~~--------~~~~~---~d~ 216 (252)
T PRK14256 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-EKYTIIIVTHNMQ--------QAARV---SDY 216 (252)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCcEEEEECCHH--------HHHhh---CCE
Confidence 5667899999999999999999999999999995432 333 3678999999876 45556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 217 i~~ 219 (252)
T PRK14256 217 TAF 219 (252)
T ss_pred EEE
Confidence 776
No 333
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.42 E-value=8.2e-13 Score=119.67 Aligned_cols=125 Identities=16% Similarity=0.174 Sum_probs=89.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC------------------CCeEEEEcCCcccCCCCCCccccccch--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF------------------QKRVVIVDTSNEIGGDGDIPHSAIGTA-------- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~------------------g~~v~~i~~~~e~~~~~~~~~~~~~~~-------- 81 (241)
.+.|+||+|||||||.|.+.+..++.. |+.|.|+.+..|+.... + .+++.++
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT-I-aeNIaRf~~~~d~~k 441 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT-I-AENIARFGEEADPEK 441 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc-H-HHHHHhccccCCHHH
Confidence 699999999999999999999998773 44556665555543211 0 0011110
Q ss_pred ----------------------hhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH-------HHHHHHHhC
Q 026207 82 ----------------------RRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAER 128 (241)
Q Consensus 82 ----------------------~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~-------~~~~~~~~~ 128 (241)
..+ ..+|++++|+..+++++--+|.+++||||.+.+|. .++..++..
T Consensus 442 IieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r 521 (580)
T COG4618 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR 521 (580)
T ss_pred HHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc
Confidence 111 12456789999999999999999999999999988 234467888
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChH
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEE 166 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~ 166 (241)
|.++++.+|-.+ +-.. +|.|++ .++.
T Consensus 522 G~~vvviaHRPs---------~L~~---~Dkilvl~~G~ 548 (580)
T COG4618 522 GGTVVVIAHRPS---------ALAS---VDKILVLQDGR 548 (580)
T ss_pred CCEEEEEecCHH---------HHhh---cceeeeecCCh
Confidence 999999999876 2222 788888 4443
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=99.42 E-value=3.2e-13 Score=128.07 Aligned_cols=121 Identities=20% Similarity=0.191 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEE----------EEcCCcccC-------------C--CC---CCcc----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVV----------IVDTSNEIG-------------G--DG---DIPH---- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~----------~i~~~~e~~-------------~--~~---~~~~---- 75 (241)
++.|+||||||||||++.|+|.++|+.|. +. ++. +.++. . .. ..+.
T Consensus 101 v~gLvG~NGaGKSTLlkiL~G~l~p~~G~-i~~~~~~~~~~~~~~-G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~ 178 (590)
T PRK13409 101 VTGILGPNGIGKTTAVKILSGELIPNLGD-YEEEPSWDEVLKRFR-GTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKG 178 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCcc-ccCCCcHHHHHHHhC-ChHHHHHHHHHhccCcceeecccchhhhhhhhcc
Confidence 89999999999999999999999887554 21 021 11110 0 00 0000
Q ss_pred ---ccc------cc--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH
Q 026207 76 ---SAI------GT--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI 125 (241)
Q Consensus 76 ---~~~------~~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~ 125 (241)
..+ .. -+....+|++++|+..+++++..+|+++++|||++++|+.... ..
T Consensus 179 tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l 258 (590)
T PRK13409 179 KVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL 258 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 000 00 0123346678899999999999999999999999999995432 33
Q ss_pred HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 126 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 126 ~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+ |.++|+++|..+ .+..+ +|+|++
T Consensus 259 ~~-g~tvIivsHd~~--------~l~~~---~D~v~v 283 (590)
T PRK13409 259 AE-GKYVLVVEHDLA--------VLDYL---ADNVHI 283 (590)
T ss_pred HC-CCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 44 899999999987 55555 666665
No 335
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=9.9e-13 Score=112.98 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=51.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
+|.+++++..+++++..+|+++++|||++++|+.... ..+ .+.++++++|... .+.++ ||+
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~-~~~tiiivth~~~--------~~~~~---~d~ 229 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK-NKVTILIVTHNMQ--------QAARV---SDY 229 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH-hCCEEEEEecCHH--------HHHHh---CCE
Confidence 4567899999999999999999999999999995432 233 3678999999886 55556 788
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
++.
T Consensus 230 i~~ 232 (265)
T PRK14252 230 TAY 232 (265)
T ss_pred EEE
Confidence 776
No 336
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.41 E-value=6.1e-13 Score=124.12 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=54.4
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++++..+++++..+|+++|+|||++++|+.... ...+.|.++|+++|..+ .+..+ ||
T Consensus 396 ~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~--------~~~~~---~d 464 (501)
T PRK11288 396 NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP--------EVLGV---AD 464 (501)
T ss_pred cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH--------HHHhh---CC
Confidence 35667899999999999999999999999999995433 33556899999999987 56666 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+++.
T Consensus 465 ~i~~ 468 (501)
T PRK11288 465 RIVV 468 (501)
T ss_pred EEEE
Confidence 8775
No 337
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=4.7e-13 Score=132.12 Aligned_cols=120 Identities=21% Similarity=0.294 Sum_probs=84.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCccc----------c--ccc------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHS----------A--IGT------ 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~----------~--~~~------ 80 (241)
.++|.||+||||||++..+.+.+.|..|. +++| +.++..- +.+.+. + .|+
T Consensus 381 ~valVG~SGsGKST~i~LL~RfydP~~G~--V~id-G~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~ 457 (1228)
T KOG0055|consen 381 TVALVGPSGSGKSTLIQLLARFYDPTSGE--VLID-GEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATRE 457 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCce--EEEc-CccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHH
Confidence 69999999999999999999999999765 6666 4333210 111110 0 000
Q ss_pred ----h------------------h----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 81 ----A------------------R----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 81 ----~------------------~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
+ . +-..+|+|++||.++++++..+|++|+|||+++.+|++.-. .....
T Consensus 458 ~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~ 537 (1228)
T KOG0055|consen 458 EIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK 537 (1228)
T ss_pred HHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc
Confidence 0 0 01126778899999999999999999999999999994332 23345
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.|.|.++|..+ .+++ +|.+++
T Consensus 538 grTTivVaHRLS--------tIrn----aD~I~v 559 (1228)
T KOG0055|consen 538 GRTTIVVAHRLS--------TIRN----ADKIAV 559 (1228)
T ss_pred CCeEEEEeeehh--------hhhc----cCEEEE
Confidence 889888889887 4444 477666
No 338
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.41 E-value=3.8e-13 Score=127.46 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=80.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCcc---ccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIPH---SAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~~---~~~- 78 (241)
.++|.||+|||||||++.+++.+++..|. .+.++.+...+.... ..+. ..+
T Consensus 368 ~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~ 447 (574)
T PRK11160 368 KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALI 447 (574)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHH
Confidence 79999999999999999999999888553 122332211111000 0000 000
Q ss_pred ------cchh--------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEE
Q 026207 79 ------GTAR--------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVML 132 (241)
Q Consensus 79 ------~~~~--------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~v 132 (241)
+... +-..+|+|++|+..+++++..+|+++++|||++.+|+.... .....+.|+
T Consensus 448 ~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tv 527 (574)
T PRK11160 448 EVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTV 527 (574)
T ss_pred HHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 0000 11225667899999999999999999999999999995433 112357899
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|..+ .+. . +|+|+.
T Consensus 528 iiitHr~~--------~~~-~---~d~i~~ 545 (574)
T PRK11160 528 LMITHRLT--------GLE-Q---FDRICV 545 (574)
T ss_pred EEEecChh--------HHH-h---CCEEEE
Confidence 99999886 332 2 688776
No 339
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=99.40 E-value=8.7e-13 Score=114.94 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=90.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccch-hhc-CC-CCCcccHHHHHHHHHhcC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTA-RRM-QV-PEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~l~~~ 104 (241)
.++++|.+|||||||++++++.++++ .++++++|..|+... +++..+. .+. .+ ..+...++.+...++++.
T Consensus 175 NILisGGTGSGKTTlLNal~~~i~~~--eRvItiEDtaELql~----~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmR 248 (355)
T COG4962 175 NILISGGTGSGKTTLLNALSGFIDSD--ERVITIEDTAELQLA----HPHVVRLETRPPNVEGTGEVTMRDLVKNALRMR 248 (355)
T ss_pred eEEEeCCCCCCHHHHHHHHHhcCCCc--ccEEEEeehhhhccC----CCceEEEeecCCCCCCcceEEHHHHHHHHhhcC
Confidence 59999999999999999999999988 699999999988643 2221110 111 11 123679999999999999
Q ss_pred CcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhhcC
Q 026207 105 PEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENIIKN 147 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~~~ 147 (241)
||.||+.|++..+ +..+.++.++||- -++|.|+++..+++.+
T Consensus 249 PDRIiVGEVRG~E-a~dLL~AmnTGHdG~~~TlHans~~ea~~r 291 (355)
T COG4962 249 PDRIIVGEVRGVE-ALDLLQAMNTGHDGGMGTLHANSPREALTR 291 (355)
T ss_pred ccceEEEEecCcc-HHHHHHHhccCCCCcceeeccCCHHHHHHH
Confidence 9999999999775 6677788999998 6999999998777753
No 340
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=1e-12 Score=103.91 Aligned_cols=113 Identities=17% Similarity=0.308 Sum_probs=78.5
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC---------------------CC-----CCCcccc-
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---------------------GD-----GDIPHSA- 77 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~---------------------~~-----~~~~~~~- 77 (241)
...+++|+||+|||||||+++++.+++++.|. ++++ ++... ++ ...|.+.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~G~--l~f~-Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r 104 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISPTSGT--LLFE-GEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR 104 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCCCCce--EEEc-CccccccChHHHHHHHHHHHcCccccccchhhccccchHHh
Confidence 33489999999999999999999999999554 4444 22211 11 0001100
Q ss_pred ------------ccch--------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCC
Q 026207 78 ------------IGTA--------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERG 129 (241)
Q Consensus 78 ------------~~~~--------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g 129 (241)
+.++ .++.-.|+|.+|+.++.+-+...|++++|||+++.+|+...+ .....+
T Consensus 105 ~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~ 184 (223)
T COG4619 105 NRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQN 184 (223)
T ss_pred ccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhc
Confidence 0000 123346778899999999999999999999999999984322 223667
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
+.++-.+|..+
T Consensus 185 vAv~WiTHd~d 195 (223)
T COG4619 185 VAVLWITHDKD 195 (223)
T ss_pred eEEEEEecChH
Confidence 88999999886
No 341
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.7e-12 Score=102.81 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=81.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC-CCCCcc-------ccccch------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG-DGDIPH-------SAIGTA------------------ 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~-~~~~~~-------~~~~~~------------------ 81 (241)
.+.+.||+|+||||+++++-+.+.++.|. +.+....+... ....|+ ..+|+.
T Consensus 39 CvvL~G~SG~GKStllr~LYaNY~~d~G~--I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvae 116 (235)
T COG4778 39 CVVLHGPSGSGKSTLLRSLYANYLPDEGQ--ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAE 116 (235)
T ss_pred EEEeeCCCCCcHHHHHHHHHhccCCCCce--EEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHh
Confidence 69999999999999999999999988654 22221111110 000011 001110
Q ss_pred --------------------hh-----------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH-------HHHH
Q 026207 82 --------------------RR-----------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACR 123 (241)
Q Consensus 82 --------------------~~-----------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~-------~~~~ 123 (241)
.+ -..+|++.+|++.+++.+..+..++++|||++.+|+ +.+.
T Consensus 117 Pll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~ 196 (235)
T COG4778 117 PLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIR 196 (235)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHH
Confidence 01 123567889999999999999999999999999998 4455
Q ss_pred HHHhCCcEEEEeecCCChhhhh
Q 026207 124 SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 124 ~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+++..|..+++..|.....+..
T Consensus 197 e~Ka~GaAlvGIFHDeevre~v 218 (235)
T COG4778 197 EAKARGAALVGIFHDEEVREAV 218 (235)
T ss_pred HHHhcCceEEEeeccHHHHHHH
Confidence 7888999999999998754444
No 342
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.39 E-value=7.6e-13 Score=107.26 Aligned_cols=130 Identities=18% Similarity=0.087 Sum_probs=78.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchh----hcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTAR----RMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~----~~~~~~~~~~~ 93 (241)
+++|.||||+|||++..+++...... |.+++|++ .++.... +..... ..+... .....+.+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s-~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~ 78 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVT-LEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESS 78 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEE-CCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhh
Confidence 47899999999999999887766544 68889987 4433210 000000 000000 00011222222
Q ss_pred ------HHHHHHHHhcCCcEEEEcCCCCHHh---H-------HHHHHHHhCCcEEEEeecCCChhhhhcCC-cccccccc
Q 026207 94 ------KVMIEAVENHMPEVIIVDEIGTEAE---A-------HACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIGG 156 (241)
Q Consensus 94 ------~~~~~~~l~~~p~vlilDE~~~~~d---~-------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~~ 156 (241)
..+.+.+...+|+++++|||+...+ . ..+...++.|++++++.|.....+....+ .++++
T Consensus 79 ~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~--- 155 (187)
T cd01124 79 LRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYL--- 155 (187)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEe---
Confidence 4455566678999999999998877 3 12224456799999999987632222222 57888
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||.|+.
T Consensus 156 aD~ii~ 161 (187)
T cd01124 156 VDGVIR 161 (187)
T ss_pred eeEEEE
Confidence 999886
No 343
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.7e-12 Score=118.58 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=85.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCccccc--------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSAI-------------------- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~~~-------------------- 78 (241)
-+.|.|+|||||||+++.|.+... ..|. ++++ +.++..- +.+||...
T Consensus 380 kVaIvG~nGsGKSTilr~LlrF~d-~sG~--I~Id-G~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~e 455 (591)
T KOG0057|consen 380 KVAIVGSNGSGKSTILRLLLRFFD-YSGS--ILID-GQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDE 455 (591)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-cCCc--EEEC-CeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHH
Confidence 599999999999999999999997 4455 5565 4443210 22232210
Q ss_pred --------------------cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 79 --------------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 79 --------------------~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
|+. .|-..+|+|.+|+..+++++..+|+++++||+++.+|.+.-. .....
T Consensus 456 eV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~ 535 (591)
T KOG0057|consen 456 EVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMS 535 (591)
T ss_pred HHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcC
Confidence 000 012235678899999999999999999999999999985432 12356
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.|+|+..|..+ .+.+ +|.|++
T Consensus 536 ~rTvI~IvH~l~--------ll~~----~DkI~~ 557 (591)
T KOG0057|consen 536 GRTVIMIVHRLD--------LLKD----FDKIIV 557 (591)
T ss_pred CCeEEEEEecch--------hHhc----CCEEEE
Confidence 899999999997 4444 699888
No 344
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.38 E-value=1.2e-12 Score=124.24 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=80.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCcc---cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIPH---SA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~~---~~-- 77 (241)
.++|.||+|||||||++.+++..++..|. .+.++.+...+.... ..+. ..
T Consensus 363 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 442 (585)
T TIGR01192 363 TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVY 442 (585)
T ss_pred EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887543 122332221111000 0000 00
Q ss_pred -----------c-----cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ +.. ..-..+|+|++|+..+++++..+|+++++|||++.+|+.... .....+.+
T Consensus 443 ~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~t 522 (585)
T TIGR01192 443 EAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRT 522 (585)
T ss_pred HHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCE
Confidence 0 000 011225667899999999999999999999999999995443 11235789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+ .. ||+|+.
T Consensus 523 vI~isH~~~--------~~-~~---~d~i~~ 541 (585)
T TIGR01192 523 TFIIAHRLS--------TV-RN---ADLVLF 541 (585)
T ss_pred EEEEEcChH--------HH-Hc---CCEEEE
Confidence 999999885 33 23 688776
No 345
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.38 E-value=1e-12 Score=123.70 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=75.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCc---cccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIP---HSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~---~~~~- 78 (241)
.++|.||+|||||||++.+++.+++..|. .+.|+.+...+.... ..+ ...+
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 425 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKII 425 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHH
Confidence 79999999999999999999999887543 123333221111000 000 0000
Q ss_pred ------c---chh------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 79 ------G---TAR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 79 ------~---~~~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
+ ... .-..+|+|++|+..+++++..+|+++++|||++.+|++... .....|.
T Consensus 426 ~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~ 505 (544)
T TIGR01842 426 EAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGI 505 (544)
T ss_pred HHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCC
Confidence 0 000 11235667899999999999999999999999999995433 2223578
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|.++|..+
T Consensus 506 tvi~ith~~~ 515 (544)
T TIGR01842 506 TVVVITHRPS 515 (544)
T ss_pred EEEEEeCCHH
Confidence 9999999875
No 346
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.37 E-value=4.9e-13 Score=108.02 Aligned_cols=138 Identities=16% Similarity=0.174 Sum_probs=91.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCC--CCccccccch------------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG--DIPHSAIGTA------------------------ 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~--~~~~~~~~~~------------------------ 81 (241)
+-.|+||||+||||++-.|++...|+.|. ++++...++.... .+.+..+|+.
T Consensus 33 lr~lIGpNGAGKTT~mD~ItGKtrp~~G~--v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k 110 (249)
T COG4674 33 LRVLIGPNGAGKTTLMDVITGKTRPQEGE--VLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDK 110 (249)
T ss_pred EEEEECCCCCCceeeeeeecccCCCCcce--EEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCc
Confidence 78999999999999999999999988655 5555323332110 0000000000
Q ss_pred --------------------------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------
Q 026207 82 --------------------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------ 123 (241)
Q Consensus 82 --------------------------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------ 123 (241)
..-..+|.+.+|..-+..++.++|+++++|||.++.......
T Consensus 111 ~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl 190 (249)
T COG4674 111 SVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190 (249)
T ss_pred chHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHH
Confidence 001224445677888888889999999999999886553222
Q ss_pred HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 124 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 124 ~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
......++++.+-|.+. .++.+ ++.|.. .++...+.+.+.++.+
T Consensus 191 ~~la~~hsilVVEHDM~--------Fvr~~---A~~VTVlh~G~VL~EGsld~v~~ 235 (249)
T COG4674 191 KSLAGKHSILVVEHDMG--------FVREI---ADKVTVLHEGSVLAEGSLDEVQN 235 (249)
T ss_pred HHHhcCceEEEEeccHH--------HHHHh---hheeEEEeccceeecccHHHhhc
Confidence 33445788999999998 56666 777777 5555555566666654
No 347
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.37 E-value=1.2e-12 Score=125.09 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=53.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
.|++++++..++.++..+|+++++|||++++|+.... ..++.|.++|.++|..+ . .+.++ +|+
T Consensus 167 LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~-~------~i~~~---~D~ 236 (617)
T TIGR00955 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS-S------ELFEL---FDK 236 (617)
T ss_pred cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC-H------HHHHH---hce
Confidence 6778899999999999999999999999999995433 44456899999999985 1 34455 777
Q ss_pred EEe
Q 026207 160 VTL 162 (241)
Q Consensus 160 V~~ 162 (241)
+++
T Consensus 237 i~l 239 (617)
T TIGR00955 237 IIL 239 (617)
T ss_pred EEE
Confidence 776
No 348
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.37 E-value=8.1e-13 Score=127.80 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=81.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCcccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~-- 77 (241)
.++|+||+|||||||++.+++.+.+..|. .+.|+.+...+... .......
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~ 572 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEIL 572 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHH
Confidence 79999999999999999999999988553 22333322111000 0000000
Q ss_pred -----------c-----cchh----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ |... +-..+|+|++|+..+++++..+|+++++|||++.+|++... .....++|
T Consensus 573 ~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T 652 (694)
T TIGR03375 573 RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKT 652 (694)
T ss_pred HHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 0 0000 01135667899999999999999999999999999995433 12235789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+ .. ||+|+.
T Consensus 653 ~iiItHrl~--------~~-~~---~D~iiv 671 (694)
T TIGR03375 653 LVLVTHRTS--------LL-DL---VDRIIV 671 (694)
T ss_pred EEEEecCHH--------HH-Hh---CCEEEE
Confidence 999999886 33 23 788877
No 349
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.37 E-value=3.3e-12 Score=119.27 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=81.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCCcccCCC-----CCCcccc----------------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEIGGD-----GDIPHSA----------------IG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~~e~~~~-----~~~~~~~----------------~~ 79 (241)
-++|.||+|||||||+|+|+|..+-..| .++.++++..-+... -..|... ++
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~ 500 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcH
Confidence 7999999999999999999999986533 234555433222110 0011110 00
Q ss_pred c--------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHh--CCcEEEEeecCCChhhhh
Q 026207 80 T--------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAE--RGVMLIGTAHGEWLENII 145 (241)
Q Consensus 80 ~--------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~--~g~~vi~t~H~~~~~~~~ 145 (241)
. .+.-.+++.|.+|+.++++++.++|+++||||.++.+|+.... ..++ .++++|.+.|..++....
T Consensus 501 ~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h 580 (604)
T COG4178 501 DLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFH 580 (604)
T ss_pred HHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHH
Confidence 0 0123457778899999999999999999999999999985433 2333 589999999999855444
No 350
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.36 E-value=1e-12 Score=124.84 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=75.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC---------CCcccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG---------DIPHSA--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~---------~~~~~~--- 77 (241)
.++|+|++|||||||++.+++.+.|..|. ++.|+++...+.... ......
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~ 448 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQ 448 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHH
Confidence 79999999999999999999999988543 122333221111100 000000
Q ss_pred ----ccc---hhh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEE
Q 026207 78 ----IGT---ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVML 132 (241)
Q Consensus 78 ----~~~---~~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~v 132 (241)
.+. ..+ -..+|+|++|+..+++++..+|+++++|||++.+|++... .....++|+
T Consensus 449 a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tv 528 (592)
T PRK10790 449 ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTL 528 (592)
T ss_pred HHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 000 000 0125567899999999999999999999999999995433 112246899
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
|.++|..+
T Consensus 529 IivtHr~~ 536 (592)
T PRK10790 529 VVIAHRLS 536 (592)
T ss_pred EEEecchH
Confidence 99999875
No 351
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=1.1e-12 Score=124.89 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=56.3
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccccE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDT 159 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~ 159 (241)
.+++.+.|+.++.=+.++|.++++|||++++|...+ +..++.|++||.|+|..+ ..+-++ .|.
T Consensus 171 iSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs-------s~lf~l---FD~ 240 (613)
T KOG0061|consen 171 LSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS-------SELFEL---FDK 240 (613)
T ss_pred cccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc-------HHHHHH---HhH
Confidence 566789999999999999999999999999999433 355556999999999998 345556 677
Q ss_pred EEe-CChHH
Q 026207 160 VTL-GDEEA 167 (241)
Q Consensus 160 V~~-~~~~~ 167 (241)
+++ .++..
T Consensus 241 l~lLs~G~~ 249 (613)
T KOG0061|consen 241 LLLLSEGEV 249 (613)
T ss_pred hhhhcCCcE
Confidence 776 44443
No 352
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.36 E-value=8.3e-12 Score=98.26 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=46.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
++++.+|++++++++.++|+++++|||++.+|++.. ++...+|++=++++|..+
T Consensus 142 lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 466889999999999999999999999999999543 366778999777778776
No 353
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.35 E-value=1.3e-12 Score=123.58 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=82.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-----------CCcccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-----------DIPHSA 77 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-----------~~~~~~ 77 (241)
..++|+|++|||||||++.++|...+..|. ++.|+++...+.... ......
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~ 438 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHH
Confidence 389999999999999999999999887543 123333222111100 000000
Q ss_pred -------ccc---hhh--------c----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH------HHhCC
Q 026207 78 -------IGT---ARR--------M----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS------IAERG 129 (241)
Q Consensus 78 -------~~~---~~~--------~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~------~~~~g 129 (241)
.+. ..+ + ..+|+|++|+..+++++..+|+++++|||++.+|...... ....+
T Consensus 439 i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~ 518 (571)
T TIGR02203 439 IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQG 518 (571)
T ss_pred HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCC
Confidence 000 000 1 1256788999999999999999999999999999954431 12347
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|.++|..+ +.+. ||.|+.
T Consensus 519 ~tiIiitH~~~---------~~~~---~D~ii~ 539 (571)
T TIGR02203 519 RTTLVIAHRLS---------TIEK---ADRIVV 539 (571)
T ss_pred CEEEEEehhhH---------HHHh---CCEEEE
Confidence 89999999875 2233 788776
No 354
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.35 E-value=1.5e-12 Score=125.97 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=80.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc--------------------CCcccCCC----------CCCcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD--------------------TSNEIGGD----------GDIPHSA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~--------------------~~~e~~~~----------~~~~~~~ 77 (241)
.++|+|++|||||||++.+++...+..|. ++++ +...+... .......
T Consensus 485 ~vaivG~sGsGKSTL~~ll~g~~~p~~G~--I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~ 562 (694)
T TIGR01846 485 FIGIVGPSGSGKSTLTKLLQRLYTPQHGQ--VLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEH 562 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCce--EEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHH
Confidence 79999999999999999999999887553 3333 11111000 0000000
Q ss_pred c------------------cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCC
Q 026207 78 I------------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERG 129 (241)
Q Consensus 78 ~------------------~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g 129 (241)
+ |.- ..-..+|+|++|+..+++++..+|+++++|||++.+|+.... .....+
T Consensus 563 i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 642 (694)
T TIGR01846 563 VIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRG 642 (694)
T ss_pred HHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCC
Confidence 0 000 001225567899999999999999999999999999995433 112357
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.|+|.++|..+ .+ .. ||+|+.
T Consensus 643 ~t~i~itH~~~--------~~-~~---~d~ii~ 663 (694)
T TIGR01846 643 RTVIIIAHRLS--------TV-RA---CDRIIV 663 (694)
T ss_pred CEEEEEeCChH--------HH-Hh---CCEEEE
Confidence 89999999875 22 23 688776
No 355
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.35 E-value=2.4e-12 Score=120.76 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=75.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCcccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSAIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~~~ 79 (241)
.++|+||+|||||||++.+++..++..|. .+.|+.+...+... .......+.
T Consensus 350 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~ 429 (529)
T TIGR02857 350 RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIR 429 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHH
Confidence 79999999999999999999999987543 12333322111100 000000000
Q ss_pred ch------------------h----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 80 TA------------------R----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 80 ~~------------------~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
.+ . .-...|+|++|+..+++++..+|+++++|||++.+|+.... .....++|
T Consensus 430 ~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t 509 (529)
T TIGR02857 430 RALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRT 509 (529)
T ss_pred HHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCE
Confidence 00 0 01225667899999999999999999999999999995433 11225789
Q ss_pred EEEeecCCC
Q 026207 132 LIGTAHGEW 140 (241)
Q Consensus 132 vi~t~H~~~ 140 (241)
+|..+|..+
T Consensus 510 ~i~itH~~~ 518 (529)
T TIGR02857 510 VLLVTHRLA 518 (529)
T ss_pred EEEEecCHH
Confidence 999999885
No 356
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.8e-12 Score=103.70 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=50.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDL 153 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l 153 (241)
+|++.+.|.-+.+++..+|++.|||||.+++|..++. ...+.|..++..+|...+-+.+. |...|+
T Consensus 145 FSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~-pD~vhv 217 (251)
T COG0396 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIK-PDKVHV 217 (251)
T ss_pred cCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcC-CCEEEE
Confidence 4567788989999999999999999999999996554 45567888888889876444442 544443
No 357
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.35 E-value=1.3e-12 Score=126.71 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=87.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~~- 78 (241)
.++|+||+||||||+++.|++.+++..|. ++.|+.+...+... .......+
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~ 588 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIM 588 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999988543 22333322111110 00000000
Q ss_pred -----------------cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H-HHhCCcEEE
Q 026207 79 -----------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-IAERGVMLI 133 (241)
Q Consensus 79 -----------------~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~-~~~~g~~vi 133 (241)
|.-..+ ...|+|++|+..+++++..+|+++|+|||++.+|++... + ....++|+|
T Consensus 589 ~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvI 668 (711)
T TIGR00958 589 AAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVL 668 (711)
T ss_pred HHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEE
Confidence 000001 125667899999999999999999999999999995433 2 123578999
Q ss_pred EeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 134 GTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 134 ~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
.++|..+ .+ .. +|+|+. .++.....+..+++.+
T Consensus 669 iItHrl~--------~i-~~---aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 669 LIAHRLS--------TV-ER---ADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEeccHH--------HH-Hh---CCEEEEEECCEEEEeeCHHHHHh
Confidence 9999875 22 22 788877 4433322244444444
No 358
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.35 E-value=4.9e-12 Score=121.40 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=87.1
Q ss_pred CccccceeeEEEEE--eEEeeCcce--eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIVKF--FYALYSINK--IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~--~~~~~~~~~--~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-.-.. ...++...+ +..| .++|.||||||||||++.+++..+++.|.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 67788885321000 012343332 2233 89999999999999999999999876432
Q ss_pred ---eEEEEcCCcccCCCCC-------------Ccccc-ccc----hh----------hcCCCCCcccHHHHHHHHHhcCC
Q 026207 57 ---RVVIVDTSNEIGGDGD-------------IPHSA-IGT----AR----------RMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 57 ---~v~~i~~~~e~~~~~~-------------~~~~~-~~~----~~----------~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.+.|+.+...+..... ..... ... .. ....+|.+++++..+++++..+|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P 163 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1333332221111000 00000 000 00 12235667899999999999999
Q ss_pred cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 106 EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+++++|||++++|+.... ...+.|.+++.++|..+
T Consensus 164 ~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~ 205 (648)
T PRK10535 164 QVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205 (648)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 999999999999995443 33446899999999886
No 359
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.8e-12 Score=116.10 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=82.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCC---------CCccc----------c-----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG---------DIPHS----------A----------- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~---------~~~~~----------~----------- 77 (241)
-+.|.|++||||||++..+++.+.++.|. +.++ +.++.... ..++. +
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~--i~~~-g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDE 442 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGS--ITLN-GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDE 442 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCCCCe--eeEC-CcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHH
Confidence 49999999999999999999999888654 4443 22211100 00110 0
Q ss_pred --------cc-----------chhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 78 --------IG-----------TARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 78 --------~~-----------~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
.+ ...++ .-+|+|.++|..+++++.++.+++++|||+.++|+..-. .+...
T Consensus 443 el~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~ 522 (573)
T COG4987 443 ELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE 522 (573)
T ss_pred HHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc
Confidence 00 00011 124567799999999999999999999999999995433 33445
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|+|+++++|... .++++ |+|++
T Consensus 523 ~kTll~vTHrL~--------~le~~----drIiv 544 (573)
T COG4987 523 GKTLLMVTHRLR--------GLERM----DRIIV 544 (573)
T ss_pred CCeEEEEecccc--------cHhhc----CEEEE
Confidence 899999999886 56664 99887
No 360
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.34 E-value=1.5e-12 Score=123.73 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=81.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCc---ccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIP---HSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~---~~~-- 77 (241)
.++|+|++|||||||++.+++..+|..|. ++.|+++...+.... ..+ ...
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~ 442 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMR 442 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887442 334443322211100 000 000
Q ss_pred -----------c-----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ |.-..+ ..+|+|.+||..+++++..+|+++++|||++.+|+.... .....++|
T Consensus 443 ~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~t 522 (588)
T PRK13657 443 AAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRT 522 (588)
T ss_pred HHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCE
Confidence 0 000001 125667899999999999999999999999999995443 11224789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+ .. +|+|+.
T Consensus 523 vIiitHr~~--------~~-~~---~D~ii~ 541 (588)
T PRK13657 523 TFIIAHRLS--------TV-RN---ADRILV 541 (588)
T ss_pred EEEEEecHH--------HH-Hh---CCEEEE
Confidence 999999885 22 23 688776
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.34 E-value=3.7e-12 Score=118.74 Aligned_cols=113 Identities=13% Similarity=0.204 Sum_probs=80.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCCccc-CCCC--------CCc---cc----cccc----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSNEI-GGDG--------DIP---HS----AIGT---- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~~e~-~~~~--------~~~---~~----~~~~---- 80 (241)
-+.|+||||+|||||++.|++.+.+..| .++.|+++..+- .... ..+ .. .+++
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Confidence 6999999999999999999888876633 346677654421 1110 000 00 0111
Q ss_pred ----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH-HhCCcEEEEeecCCC
Q 026207 81 ----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-AERGVMLIGTAHGEW 140 (241)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~-~~~g~~vi~t~H~~~ 140 (241)
...+..+|+|.+.|..++.++..+|.++|||||++.+|..... .+ .+-.-+||+++|...
T Consensus 430 ~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~ 497 (530)
T COG0488 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRY 497 (530)
T ss_pred hHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 0235568889999999999999999999999999999996554 22 334567889999987
No 362
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.5e-12 Score=116.81 Aligned_cols=123 Identities=11% Similarity=0.090 Sum_probs=80.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC-------Cc---cc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD-------IP---HS--- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~-------~~---~~--- 76 (241)
.+.|.|++|||||||++.++|..++..|. ++.++++..-+..... .+ ..
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~ 428 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEII 428 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHH
Confidence 79999999999999999999999977443 1223322111110000 00 00
Q ss_pred --------------cccchhhcC----CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEE
Q 026207 77 --------------AIGTARRMQ----VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVML 132 (241)
Q Consensus 77 --------------~~~~~~~~~----~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~v 132 (241)
..|.-..++ -.|+|+.||.++++++..+++++++|||++.+|++.-. .....+.|+
T Consensus 429 ~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktv 508 (559)
T COG4988 429 AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTV 508 (559)
T ss_pred HHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeE
Confidence 000000111 14556799999999999999999999999999995432 223346899
Q ss_pred EEeecCCChhhhhcCCccccccccccEEEe
Q 026207 133 IGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 133 i~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++.+|... .+.+ +|+|++
T Consensus 509 l~itHrl~--------~~~~----~D~I~v 526 (559)
T COG4988 509 LVITHRLE--------DAAD----ADRIVV 526 (559)
T ss_pred EEEEcChH--------HHhc----CCEEEE
Confidence 99999885 3333 588887
No 363
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.33 E-value=2.5e-12 Score=105.36 Aligned_cols=113 Identities=19% Similarity=0.352 Sum_probs=79.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC------------------CCCcc--------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD------------------GDIPH-------------- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~------------------~~~~~-------------- 75 (241)
++.++|.||+|||||++.++|.+.++.|+ +.|+ +.++... +..+.
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l~~t~G~--I~Id-g~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg 110 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDLKPTSGQ--ILID-GVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRG 110 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCccccCCce--EEEC-ceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcC
Confidence 89999999999999999999999999665 4444 2221110 00000
Q ss_pred ------c-----------------cccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-----
Q 026207 76 ------S-----------------AIGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----- 123 (241)
Q Consensus 76 ------~-----------------~~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----- 123 (241)
. ..|. ..+++.+|++++|...+..+-.+.|+++++||=++.+||....
T Consensus 111 ~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~l 190 (263)
T COG1101 111 KKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190 (263)
T ss_pred cccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHH
Confidence 0 0000 0135667888899999999999999999999999999995443
Q ss_pred ---HHHhCCcEEEEeecCCChhhhh
Q 026207 124 ---SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 124 ---~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
-..+...|.++++|.+ ++++
T Consensus 191 T~kiV~~~klTtlMVTHnm--~~Al 213 (263)
T COG1101 191 TAKIVEEHKLTTLMVTHNM--EDAL 213 (263)
T ss_pred HHHHHHhcCCceEEEeccH--HHHH
Confidence 2345678888888988 4444
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.33 E-value=6.1e-12 Score=129.36 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=46.2
Q ss_pred CCCcccHHHHHHHHHhcCCc-EEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPE-VIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~-vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
+|+|++++..++.++..+|+ ++++|||++++|.... ++.++.|.+||.++|..+
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 56688999999999999997 9999999999999543 244567999999999986
No 365
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.33 E-value=2.5e-12 Score=121.72 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=74.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCcccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSAIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~~~ 79 (241)
.++|.||||||||||++.+++.++|..|. .+.++.+...+... .......+.
T Consensus 343 ~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~ 422 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIE 422 (569)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887543 12233221111100 000000000
Q ss_pred ch----------hh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 80 TA----------RR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 80 ~~----------~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
.+ .+ -..+|+|++|+..+++++..+|+++++|||++.+|+.... .....|.|
T Consensus 423 ~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~t 502 (569)
T PRK10789 423 HVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRT 502 (569)
T ss_pred HHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCE
Confidence 00 00 1125667899999999999999999999999999995433 11235889
Q ss_pred EEEeecCCC
Q 026207 132 LIGTAHGEW 140 (241)
Q Consensus 132 vi~t~H~~~ 140 (241)
+|.++|..+
T Consensus 503 ii~itH~~~ 511 (569)
T PRK10789 503 VIISAHRLS 511 (569)
T ss_pred EEEEecchh
Confidence 999999875
No 366
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.32 E-value=1.9e-12 Score=125.44 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=81.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC-----------CCCccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD-----------GDIPHSAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~-----------~~~~~~~~ 78 (241)
.++|+||+|||||||++.+++.+.|+.|. ++.|+.+...+... .......+
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i 581 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEI 581 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHH
Confidence 79999999999999999999999888543 23344322211100 00000000
Q ss_pred ------------------cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H-H-HhCCcE
Q 026207 79 ------------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S-I-AERGVM 131 (241)
Q Consensus 79 ------------------~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~-~-~~~g~~ 131 (241)
|.-..+ ..+|+|++|+..+++++..+|+++++|||++.+|++... + . ...|.|
T Consensus 582 ~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T 661 (708)
T TIGR01193 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKT 661 (708)
T ss_pred HHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCE
Confidence 000001 124667899999999999999999999999999995432 1 1 124789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+ .. ||+|+.
T Consensus 662 ~IiitHr~~--------~~-~~---~D~i~~ 680 (708)
T TIGR01193 662 IIFVAHRLS--------VA-KQ---SDKIIV 680 (708)
T ss_pred EEEEecchH--------HH-Hc---CCEEEE
Confidence 999999986 33 23 788887
No 367
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.32 E-value=6.2e-12 Score=118.57 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=74.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC------Ccccc------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD------IPHSA------ 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~------~~~~~------ 77 (241)
.++|.||+|||||||++.++|.++++.|. .+.++.+...+..... .....
T Consensus 351 ~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~ 430 (547)
T PRK10522 351 LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLE 430 (547)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHH
Confidence 79999999999999999999999887443 1223322111110000 00000
Q ss_pred ---ccchhh-------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCC
Q 026207 78 ---IGTARR-------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGE 139 (241)
Q Consensus 78 ---~~~~~~-------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~ 139 (241)
.+.... -..+|+|++|+..+++++..+|+++++|||++.+|++... .. +..|.|+|.++|..
T Consensus 431 ~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~ 510 (547)
T PRK10522 431 RLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD 510 (547)
T ss_pred HcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech
Confidence 000000 0135668899999999999999999999999999995433 11 22488999999976
Q ss_pred C
Q 026207 140 W 140 (241)
Q Consensus 140 ~ 140 (241)
+
T Consensus 511 ~ 511 (547)
T PRK10522 511 H 511 (547)
T ss_pred H
Confidence 4
No 368
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.31 E-value=3.6e-12 Score=119.62 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=74.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEEEcCCcccCCCC-------CCc---ccc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVIVDTSNEIGGDG-------DIP---HSA--- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~i~~~~e~~~~~-------~~~---~~~--- 77 (241)
.++|.||+|||||||++.+++.++++.|. .+.|+++..-+.... ..+ ...
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~ 442 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWA 442 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHH
Confidence 79999999999999999999999988554 233443222111100 000 000
Q ss_pred ----------c-----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H---HHhCCcEE
Q 026207 78 ----------I-----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S---IAERGVML 132 (241)
Q Consensus 78 ----------~-----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~---~~~~g~~v 132 (241)
+ |.-..+ ..+|+|++||..+++++..+|+++++|||++.+|++... + ....++|+
T Consensus 443 al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~Tv 522 (529)
T TIGR02868 443 ALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTV 522 (529)
T ss_pred HHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 0 000001 125667899999999999999999999999999995443 1 12357899
Q ss_pred EEeecC
Q 026207 133 IGTAHG 138 (241)
Q Consensus 133 i~t~H~ 138 (241)
|+++|.
T Consensus 523 IiItHr 528 (529)
T TIGR02868 523 VVITHH 528 (529)
T ss_pred EEEecC
Confidence 999895
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.31 E-value=7.1e-12 Score=103.23 Aligned_cols=130 Identities=13% Similarity=0.114 Sum_probs=77.0
Q ss_pred EEEEEeEEeeCc--ceeeccEEEEEeCCCchHHHHHHHHHHhccccCC------------------------CeEEEEcC
Q 026207 10 LIVKFFYALYSI--NKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQ------------------------KRVVIVDT 63 (241)
Q Consensus 10 ~~~r~~~~~~~~--~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g------------------------~~v~~i~~ 63 (241)
+.+..++..-.. .....|+++|+||||||||||++++++.+.+..+ .++.++.+
T Consensus 4 ~~~~~fr~~~~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq 83 (197)
T cd03278 4 LELKGFKSFADKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFD 83 (197)
T ss_pred EEEeCCcCcCCCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEE
Confidence 344555443122 2445579999999999999999999988643210 12222221
Q ss_pred CcccCC---CCCCccccc---c-chhhcCCCCCcccHHHHHHHHHh----cCCcEEEEcCCCCHHhHHHHH-------HH
Q 026207 64 SNEIGG---DGDIPHSAI---G-TARRMQVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR-------SI 125 (241)
Q Consensus 64 ~~e~~~---~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~l~----~~p~vlilDE~~~~~d~~~~~-------~~ 125 (241)
...... ........+ . .......+|.+++++..++.++. ..|+++++|||++++|+.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~ 163 (197)
T cd03278 84 NSDGRYSIISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEF 163 (197)
T ss_pred cCCCceeEEehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 111100 000000000 0 00123345667899999998875 456999999999999985433 22
Q ss_pred HhCCcEEEEeecCCC
Q 026207 126 AERGVMLIGTAHGEW 140 (241)
Q Consensus 126 ~~~g~~vi~t~H~~~ 140 (241)
..+.++|+++|...
T Consensus 164 -~~~~tiIiitH~~~ 177 (197)
T cd03278 164 -SKETQFIVITHRKG 177 (197)
T ss_pred -ccCCEEEEEECCHH
Confidence 23688999999985
No 370
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.31 E-value=3.9e-12 Score=120.12 Aligned_cols=120 Identities=14% Similarity=0.226 Sum_probs=81.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCccc-------------------ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHS-------------------AIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~-------------------~~~ 79 (241)
.++|+||+|||||||++.+++...++.|. ++++ +.++... ..+++. ...
T Consensus 370 ~~aivG~sGsGKSTl~~ll~g~~~p~~G~--i~~~-g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~ 446 (555)
T TIGR01194 370 IVFIVGENGCGKSTLAKLFCGLYIPQEGE--ILLD-GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQ 446 (555)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEEC-CEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHH
Confidence 79999999999999999999999888554 3343 2211100 000000 000
Q ss_pred -chhh----------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEE
Q 026207 80 -TARR----------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIG 134 (241)
Q Consensus 80 -~~~~----------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~ 134 (241)
.+.. ...+|+|++|+..+++++..+|+++++|||++.+|++... ..+..|.|+|.
T Consensus 447 ~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiii 526 (555)
T TIGR01194 447 QYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526 (555)
T ss_pred HHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 0000 1235678899999999999999999999999999995432 12245899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|..+ .+ .. ||+|+.
T Consensus 527 isH~~~--------~~-~~---~d~i~~ 542 (555)
T TIGR01194 527 ISHDDQ--------YF-EL---ADQIIK 542 (555)
T ss_pred EeccHH--------HH-Hh---CCEEEE
Confidence 999764 22 23 788776
No 371
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.29 E-value=5.2e-12 Score=104.17 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=64.8
Q ss_pred Ccceeecc--EEEEEeCCCchHHHHHHHHH-HhccccCCC--------eEEEEcCCcccCCCCCCccccccchhhcCCCC
Q 026207 20 SINKIIFD--FFLSYFRPGVGKTTVMREIA-RVLSDEFQK--------RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE 88 (241)
Q Consensus 20 ~~~~~~~g--~vll~Gp~GsGKTTLl~~l~-~~l~~~~g~--------~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~ 88 (241)
....+..+ +++|+||||+|||||++.++ ..+..+.|. .+.++++-.+... ..... ...+..++
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg----~~~~l--~~~~s~fs 93 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIG----DEQSI--EQSLSTFS 93 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecC----chhhh--hcCcchHH
Confidence 34455555 79999999999999999998 222112111 1111110000000 00000 01123334
Q ss_pred CcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEeecCC
Q 026207 89 PSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGTAHGE 139 (241)
Q Consensus 89 ~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t~H~~ 139 (241)
.++++...+..+ ..+|+++++|||+++.|+... ....+.|.+++.++|..
T Consensus 94 ~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~ 151 (200)
T cd03280 94 SHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG 151 (200)
T ss_pred HHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH
Confidence 456665555444 478999999999999998432 13344588999999964
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.29 E-value=1.5e-11 Score=102.33 Aligned_cols=66 Identities=12% Similarity=0.010 Sum_probs=49.7
Q ss_pred CCCCcccHHHHHHHHHhc----------CCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCC
Q 026207 86 VPEPSLQHKVMIEAVENH----------MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~----------~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p 148 (241)
.++.+++++..++.++.. +|+++++|||++.+|+.... ...+.|.++++++|...
T Consensus 123 ~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-------- 194 (213)
T cd03279 123 TLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-------- 194 (213)
T ss_pred ccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH--------
Confidence 356678999999888864 67899999999999984332 33445889999999776
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ +|++.+
T Consensus 195 ~~~~~---~~~i~~ 205 (213)
T cd03279 195 LKERI---PQRLEV 205 (213)
T ss_pred HHHhh---CcEEEE
Confidence 44555 677766
No 373
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.29 E-value=5.6e-12 Score=119.40 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CCcc---cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DIPH---SA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~~~---~~-- 77 (241)
.++|.||+|||||||++.++|.+++..|. .+.|+++..-+.... ..+. ..
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~ 447 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVE 447 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887543 122332211110000 0000 00
Q ss_pred -----------c-----cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ |.. ..-...|+|++|+..+++++..+|+++++|||++.+|..... .....+++
T Consensus 448 ~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t 527 (576)
T TIGR02204 448 AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRT 527 (576)
T ss_pred HHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCE
Confidence 0 000 001124567899999999999999999999999999995433 11225789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+ .. +|+|+.
T Consensus 528 ~IiitH~~~--------~~-~~---~d~vi~ 546 (576)
T TIGR02204 528 TLIIAHRLA--------TV-LK---ADRIVV 546 (576)
T ss_pred EEEEecchH--------HH-Hh---CCEEEE
Confidence 999999885 22 23 688776
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.29 E-value=1.7e-11 Score=103.77 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=46.3
Q ss_pred CCCcccHHHHHHHHHh----cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccc
Q 026207 87 PEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIG 155 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~----~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~ 155 (241)
+|++++++..+++++. .+|+++++|||++++|+.... ... .+.++++++|... +..+
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~-~~~~ii~~~h~~~---------~~~~-- 226 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS-DGAQFITTTFRPE---------LLEV-- 226 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH---------HHhh--
Confidence 4557789999999885 358999999999999995433 222 3778888888753 3345
Q ss_pred cccEEEe
Q 026207 156 GVDTVTL 162 (241)
Q Consensus 156 ~~d~V~~ 162 (241)
||+++.
T Consensus 227 -~d~i~~ 232 (243)
T cd03272 227 -ADKFYG 232 (243)
T ss_pred -CCEEEE
Confidence 777765
No 375
>PLN03140 ABC transporter G family member; Provisional
Probab=99.29 E-value=3.8e-12 Score=130.95 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=55.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
-.|+|+++++.++.++..+|+++++|||++++|+.... ... ..|.++++++|... +.+.++ +
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~-------~~i~~l---f 405 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPA-------PETFDL---F 405 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCC-------HHHHHH---h
Confidence 35678899999999999999999999999999995432 333 35889999999865 245566 8
Q ss_pred cEEEe-CChHH
Q 026207 158 DTVTL-GDEEA 167 (241)
Q Consensus 158 d~V~~-~~~~~ 167 (241)
|+|++ .++..
T Consensus 406 D~vilL~~G~i 416 (1470)
T PLN03140 406 DDIILLSEGQI 416 (1470)
T ss_pred heEEEeeCceE
Confidence 88887 44443
No 376
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.28 E-value=8.6e-12 Score=128.60 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=51.1
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHh-CCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++|+..+++++..+|+++++|||++.+|+.... .... .|.|+|+++|..+ .+ .. ||
T Consensus 580 LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--------~i-~~---aD 647 (1466)
T PTZ00265 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--------TI-RY---AN 647 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--------HH-Hh---CC
Confidence 5667899999999999999999999999999994332 2322 4889999999886 33 24 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|+.
T Consensus 648 ~Iiv 651 (1466)
T PTZ00265 648 TIFV 651 (1466)
T ss_pred EEEE
Confidence 8887
No 377
>PLN03232 ABC transporter C family member; Provisional
Probab=99.27 E-value=7.1e-12 Score=129.79 Aligned_cols=136 Identities=13% Similarity=0.195 Sum_probs=87.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc---------------------c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS---------------------A 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~---------------------~ 77 (241)
.++|+|++|||||||++.|.+.+.++.|. +.++ +.++.. . ..+|+. .
T Consensus 1264 kvaIVG~SGSGKSTL~~lL~rl~~p~~G~--I~Id-G~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdee 1340 (1495)
T PLN03232 1264 KVGVVGRTGAGKSSMLNALFRIVELEKGR--IMID-DCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAD 1340 (1495)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCce--EEEC-CEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHH
Confidence 79999999999999999999999888554 3443 211100 0 000110 0
Q ss_pred ccch----------h--------hc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H---HHhCC
Q 026207 78 IGTA----------R--------RM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S---IAERG 129 (241)
Q Consensus 78 ~~~~----------~--------~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~---~~~~g 129 (241)
+-.+ . .+ ..+|+|++|+..+++++..+|+++++||+++.+|.+.-. + ....+
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~ 1420 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 0000 0 00 124557899999999999999999999999999985432 1 12357
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
+|+|+++|..+ .+.+ +|+|+. .++.....+..+++.+
T Consensus 1421 ~TvI~IAHRl~--------ti~~----~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1421 CTMLVIAHRLN--------TIID----CDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CEEEEEeCCHH--------HHHh----CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999886 3333 688887 4443322244444443
No 378
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.27 E-value=1e-11 Score=122.81 Aligned_cols=137 Identities=18% Similarity=0.243 Sum_probs=92.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCccc----------c--cc-------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHS----------A--IG------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~----------~--~~------- 79 (241)
.++|.||+||||||.+..|-+.+.|..|. +.+| +.++..- ..+.+. + .|
T Consensus 1018 TvALVG~SGsGKSTvI~LLeRfYdp~~G~--V~ID-g~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~ 1094 (1228)
T KOG0055|consen 1018 TVALVGPSGSGKSTVISLLERFYDPDAGK--VKID-GVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEE 1094 (1228)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCCCe--EEEC-CcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHH
Confidence 59999999999999999999999888655 6666 4433211 000000 0 00
Q ss_pred ---------------------chh----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 80 ---------------------TAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 80 ---------------------~~~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
+-. +-..+|+|++||.++++|+..+|++|+|||.++.+|.+.-+ .....
T Consensus 1095 eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~ 1174 (1228)
T KOG0055|consen 1095 EIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME 1174 (1228)
T ss_pred HHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc
Confidence 000 11235677899999999999999999999999999984322 33345
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
|.|.|...|..+ .+.+ ||.|.+ .++....+++-+++.++
T Consensus 1175 gRT~IvIAHRLS--------TIqn----aD~I~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1175 GRTTIVIAHRLS--------TIQN----ADVIAVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred CCcEEEEecchh--------hhhc----CCEEEEEECCEEEecccHHHHHhC
Confidence 888888889887 4443 688887 44433333555555553
No 379
>PLN03130 ABC transporter C family member; Provisional
Probab=99.27 E-value=9.8e-12 Score=129.27 Aligned_cols=120 Identities=15% Similarity=0.231 Sum_probs=81.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc---------------------c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS---------------------A 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~---------------------~ 77 (241)
.++|+|++|||||||++.|.+.+.+..|. +.++ +.++.. . ..+|+. .
T Consensus 1267 kVaIVGrSGSGKSTLl~lL~rl~~p~~G~--I~ID-G~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdee 1343 (1622)
T PLN03130 1267 KVGIVGRTGAGKSSMLNALFRIVELERGR--ILID-GCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDAD 1343 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCCCce--EEEC-CEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHH
Confidence 69999999999999999999999888554 4444 222110 0 011110 0
Q ss_pred c------------------cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---H---HHhCC
Q 026207 78 I------------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---S---IAERG 129 (241)
Q Consensus 78 ~------------------~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~---~~~~g 129 (241)
+ |.-..+ ..+|+|++|+..+++++..+|+++|+||+++.+|.+.-. + ....+
T Consensus 1344 i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~ 1423 (1622)
T PLN03130 1344 LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1423 (1622)
T ss_pred HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Confidence 0 000001 124557899999999999999999999999999984322 1 12357
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+|+.+|..+ .+.+ ||+|+.
T Consensus 1424 ~TvI~IAHRL~--------tI~~----~DrIlV 1444 (1622)
T PLN03130 1424 CTMLIIAHRLN--------TIID----CDRILV 1444 (1622)
T ss_pred CEEEEEeCChH--------HHHh----CCEEEE
Confidence 99999999886 3333 577776
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.26 E-value=4.9e-11 Score=98.78 Aligned_cols=131 Identities=12% Similarity=0.062 Sum_probs=74.1
Q ss_pred EEEEEeEEeeC--cceeeccEEEEEeCCCchHHHHHHHHH----HhccccCCC---------------eEEEE-cCC--c
Q 026207 10 LIVKFFYALYS--INKIIFDFFLSYFRPGVGKTTVMREIA----RVLSDEFQK---------------RVVIV-DTS--N 65 (241)
Q Consensus 10 ~~~r~~~~~~~--~~~~~~g~vll~Gp~GsGKTTLl~~l~----~~l~~~~g~---------------~v~~i-~~~--~ 65 (241)
+.++.++..+. ......|+++|.||||+|||||+.++. +...+..+. .|.+. ++. .
T Consensus 4 l~l~nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~ 83 (204)
T cd03240 4 LSIRNIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK 83 (204)
T ss_pred EEEECcccccCceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCC
Confidence 34455544222 234456799999999999999999995 555443210 11111 111 0
Q ss_pred ccC--------CC-CCCccccccc--hhhcCCCCCcccHH------HHHHHHHhcCCcEEEEcCCCCHHhHHHHH-----
Q 026207 66 EIG--------GD-GDIPHSAIGT--ARRMQVPEPSLQHK------VMIEAVENHMPEVIIVDEIGTEAEAHACR----- 123 (241)
Q Consensus 66 e~~--------~~-~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~l~~~p~vlilDE~~~~~d~~~~~----- 123 (241)
.+. .. ...+...... ......+|.+++++ ..++.++..+|+++++|||++.+|+....
T Consensus 84 ~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~ 163 (204)
T cd03240 84 KYTITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE 163 (204)
T ss_pred EEEEEEEhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHH
Confidence 000 00 0000000000 01223456677775 46677888999999999999999984333
Q ss_pred ---HHHhC-CcEEEEeecCCC
Q 026207 124 ---SIAER-GVMLIGTAHGEW 140 (241)
Q Consensus 124 ---~~~~~-g~~vi~t~H~~~ 140 (241)
...+. |.++|+++|...
T Consensus 164 ~l~~~~~~~~~~iiiitH~~~ 184 (204)
T cd03240 164 IIEERKSQKNFQLIVITHDEE 184 (204)
T ss_pred HHHHHHhccCCEEEEEEecHH
Confidence 22233 788999999764
No 381
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.26 E-value=9.8e-12 Score=127.86 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=52.9
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.|+|+++|+.++.++..+|+++++|||++++|+.... ... ..|.++++++|... . .+.++ +|
T Consensus 210 LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~-~------~i~~l---~D 279 (1394)
T TIGR00956 210 VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCS-Q------DAYEL---FD 279 (1394)
T ss_pred CCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCC-H------HHHHh---hc
Confidence 6778999999999999999999999999999995432 333 35899999999864 1 44555 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 280 ~v~~ 283 (1394)
T TIGR00956 280 KVIV 283 (1394)
T ss_pred eEEE
Confidence 7777
No 382
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=6e-12 Score=114.15 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=48.9
Q ss_pred cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----HHhCCcEEEEeecCCC
Q 026207 84 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGVMLIGTAHGEW 140 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~~~~g~~vi~t~H~~~ 140 (241)
+..+|+|.+++..+++|+..+||+++||||++.+|..++.. .....+|+|+++|..+
T Consensus 196 t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~ 256 (582)
T KOG0062|consen 196 TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRN 256 (582)
T ss_pred ccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHH
Confidence 34578899999999999999999999999999999976653 3445688999999987
No 383
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.25 E-value=4.6e-11 Score=93.72 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=65.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeE-------------------EEEcCCcccCCCCCCccccccchhhcCCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRV-------------------VIVDTSNEIGGDGDIPHSAIGTARRMQVPE 88 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v-------------------~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~ 88 (241)
-+.|+|+||+||||++..++..+... |.+| +.++++.+-... ....+. .+++-+.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la----~~~~~~-~rvGkY~ 80 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILA----RVGFSR-PRVGKYG 80 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeeeecCCeEeeeEEEEccCCceEEEE----EcCCCC-cccceEE
Confidence 37899999999999999999888755 2333 333322221100 000000 0111110
Q ss_pred Ccc-cHH-H---HHHHHHhcCCcEEEEcCCCCHHhH-----HHHHHHHhCCcEEEEeecCCChhhhhcCCccccc
Q 026207 89 PSL-QHK-V---MIEAVENHMPEVIIVDEIGTEAEA-----HACRSIAERGVMLIGTAHGEWLENIIKNPILSDL 153 (241)
Q Consensus 89 ~~~-~~~-~---~~~~~l~~~p~vlilDE~~~~~d~-----~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l 153 (241)
-.. ..+ . +++.|+ ..+|++|+||++.++-. +++.+..+++..+|+|.|-.+. +|.+..+
T Consensus 81 V~v~~le~i~~~al~rA~-~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr-----~P~v~~i 149 (179)
T COG1618 81 VNVEGLEEIAIPALRRAL-EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSR-----HPLVQRI 149 (179)
T ss_pred eeHHHHHHHhHHHHHHHh-hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccC-----ChHHHHh
Confidence 000 111 2 223333 34899999999988644 3455677789999999999872 4545444
No 384
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.25 E-value=3.9e-11 Score=95.26 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=45.7
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~ 140 (241)
+|++.+|++++++++.-.|+++|-|||+..+|...-. ...+.|.|++.++|...
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence 5678899999999999999999999999999884332 33467999999999875
No 385
>PLN03140 ABC transporter G family member; Provisional
Probab=99.23 E-value=2.9e-11 Score=124.52 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=47.2
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.+|+|++++..++.++..+|+++++|||++++|+.... ..++.|.++|.|+|..+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35668899999999999999999999999999995432 44567999999999986
No 386
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.23 E-value=1.9e-11 Score=126.88 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=87.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc---------------------c
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS---------------------A 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~---------------------~ 77 (241)
.++|+|++|||||||++.|.+.+.+..|. +.++ +.++.. . ..+|+. .
T Consensus 1314 kiaIVGrTGsGKSTL~~lL~rl~~~~~G~--I~Id-G~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdee 1390 (1522)
T TIGR00957 1314 KVGIVGRTGAGKSSLTLGLFRINESAEGE--IIID-GLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEE 1390 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhcCccCCCCe--EEEC-CEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHH
Confidence 69999999999999999999999887554 4443 211110 0 000110 0
Q ss_pred c------------------cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH---HhCC
Q 026207 78 I------------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI---AERG 129 (241)
Q Consensus 78 ~------------------~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~---~~~g 129 (241)
+ |.-..+ ..+|+|++|+..+++++..+|+++++||+++.+|.+.-. ++ ...+
T Consensus 1391 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~ 1470 (1522)
T TIGR00957 1391 VWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFED 1470 (1522)
T ss_pred HHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 0 000011 124557899999999999999999999999999985322 21 2357
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
+|+|+.+|..+ .+.+ +|+|+. .++.....+...++.+
T Consensus 1471 ~TvI~IAHRl~--------ti~~----~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1471 CTVLTIAHRLN--------TIMD----YTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CEEEEEecCHH--------HHHh----CCEEEEEECCEEEEECCHHHHHh
Confidence 89999999886 3333 688887 4443322244444443
No 387
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.23 E-value=1.2e-10 Score=96.98 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=45.3
Q ss_pred CCCCCcccHHHHHHHHHhc----CCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccc
Q 026207 85 QVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDL 153 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~----~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l 153 (241)
..++.+++++..++.++.. .|+++++|||++++|+.... ... .+.++++++|.. .+..+
T Consensus 126 ~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~---------~~~~~ 195 (212)
T cd03274 126 SNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN---------NMFEL 195 (212)
T ss_pred hhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH---------HHHHh
Confidence 3456678899999988753 47999999999999984432 332 355666666764 34445
Q ss_pred cccccEEEe
Q 026207 154 IGGVDTVTL 162 (241)
Q Consensus 154 ~~~~d~V~~ 162 (241)
||+++.
T Consensus 196 ---~d~v~~ 201 (212)
T cd03274 196 ---ADRLVG 201 (212)
T ss_pred ---CCEEEE
Confidence 888776
No 388
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.22 E-value=7.7e-11 Score=92.44 Aligned_cols=131 Identities=22% Similarity=0.177 Sum_probs=75.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCC-----CCccccccchhhcCCCCC----cccHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDG-----DIPHSAIGTARRMQVPEP----SLQHKVMIE 98 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~-----~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 98 (241)
+++|+||||+||||++..++...... +.++++++......... .................. .........
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 47899999999999999999988764 67888888332221000 000000000000000111 112233456
Q ss_pred HHHhcCCcEEEEcCCCCHHhHH-------------H----HHHHHhCCcEEEEeecCCChhhhhc----CC-cccccccc
Q 026207 99 AVENHMPEVIIVDEIGTEAEAH-------------A----CRSIAERGVMLIGTAHGEWLENIIK----NP-ILSDLIGG 156 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~~d~~-------------~----~~~~~~~g~~vi~t~H~~~~~~~~~----~p-~l~~l~~~ 156 (241)
.+...+|+++++||++...+.. . ...+.+.+++++.++|..+...... .+ .++++
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~--- 156 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRLTRGAQNLEDI--- 156 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccCcccccCccceeee---
Confidence 6777899999999999653321 1 1134456899999999887333321 11 35555
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
+|.+++
T Consensus 157 ~d~~~~ 162 (165)
T cd01120 157 ADTVIV 162 (165)
T ss_pred cceEEE
Confidence 777664
No 389
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.22 E-value=3.3e-11 Score=125.10 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=77.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC----------CCccc------------cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG----------DIPHS------------AIGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~----------~~~~~------------~~~~ 80 (241)
.++|+||+|||||||++.++|.+++..|. ++.|+.+..-+.... ..... .+..
T Consensus 666 ~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~ 745 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEI 745 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHh
Confidence 79999999999999999999999887543 455665432221100 00000 0000
Q ss_pred h---------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----H-----HhCCcEEEEeecCCC
Q 026207 81 A---------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----I-----AERGVMLIGTAHGEW 140 (241)
Q Consensus 81 ~---------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~-----~~~g~~vi~t~H~~~ 140 (241)
. .+-..+|+|++|+..+++++..+|+++++|||++.+|+..... . ...|.++|.++|...
T Consensus 746 ~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~ 823 (1522)
T TIGR00957 746 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS 823 (1522)
T ss_pred cCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh
Confidence 0 0112356788999999999999999999999999999954431 1 134789999999875
No 390
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.22 E-value=4e-11 Score=96.23 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=80.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc---------------------CCcccCCCCCCccccccch-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD---------------------TSNEIGGDGDIPHSAIGTA----- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~---------------------~~~e~~~~~~~~~~~~~~~----- 81 (241)
-+.++|.||||||||.++++|.++|..|+ +.++ +++... .|...+|..
T Consensus 41 TlaiIG~NGSGKSTLakMlaGmi~PTsG~--il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~----NPRl~iGqiLd~PL 114 (267)
T COG4167 41 TLAIIGENGSGKSTLAKMLAGMIEPTSGE--ILINDHPLHFGDYSFRSKRIRMIFQDPNTSL----NPRLRIGQILDFPL 114 (267)
T ss_pred EEEEEccCCCcHhHHHHHHhcccCCCCce--EEECCccccccchHhhhhheeeeecCCcccc----ChhhhhhhHhcchh
Confidence 58999999999999999999999999554 2222 121111 111111110
Q ss_pred -------------------hhc-----------CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------
Q 026207 82 -------------------RRM-----------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------- 123 (241)
Q Consensus 82 -------------------~~~-----------~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------- 123 (241)
.++ ...+.+.+|++++++++..+|++||.||.-+.+|.....
T Consensus 115 ~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~Le 194 (267)
T COG4167 115 RLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE 194 (267)
T ss_pred hhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHH
Confidence 111 123345699999999999999999999999999884322
Q ss_pred HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CCh
Q 026207 124 SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDE 165 (241)
Q Consensus 124 ~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~ 165 (241)
.-.+.|+..|.+..-.. .+.|+ +|.|+. .++
T Consensus 195 LQek~GiSyiYV~QhlG--------~iKHi---~D~viVM~EG 226 (267)
T COG4167 195 LQEKQGISYIYVTQHIG--------MIKHI---SDQVLVMHEG 226 (267)
T ss_pred HHHHhCceEEEEechhh--------Hhhhh---cccEEEEecC
Confidence 12345888555443333 67888 888887 443
No 391
>PTZ00243 ABC transporter; Provisional
Probab=99.22 E-value=2.2e-11 Score=126.47 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=86.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc----------cc----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS----------AI---------- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~----------~~---------- 78 (241)
.++|+|++|||||||++.|++.+.+..|. +.++ +.++.. . ..+|+. ++
T Consensus 1338 kVaIVGrTGSGKSTLl~lLlrl~~p~~G~--I~ID-G~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdee 1414 (1560)
T PTZ00243 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGE--IRVN-GREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAE 1414 (1560)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcE--EEEC-CEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHH
Confidence 69999999999999999999999887554 3443 222110 0 011110 00
Q ss_pred -------------------cchhhc----CCCCCcccHHHHHHHHHhcC-CcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 79 -------------------GTARRM----QVPEPSLQHKVMIEAVENHM-PEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 79 -------------------~~~~~~----~~~~~~~~~~~~~~~~l~~~-p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
|.-..+ ..+|+|++|+..+++++..+ |++|||||+++.+|.+.-. .....
T Consensus 1415 I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~ 1494 (1560)
T PTZ00243 1415 VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS 1494 (1560)
T ss_pred HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC
Confidence 000001 12455779999999999985 8999999999999884332 11235
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
++|+|+++|..+ .+.+ ||+|+. .++.....+..+++.
T Consensus 1495 ~~TvI~IAHRl~--------ti~~----~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1495 AYTVITIAHRLH--------TVAQ----YDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred CCEEEEEeccHH--------HHHh----CCEEEEEECCEEEEECCHHHHH
Confidence 789999999886 3333 699887 444332224444443
No 392
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.22 E-value=1.9e-11 Score=115.71 Aligned_cols=136 Identities=15% Similarity=0.221 Sum_probs=87.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCcccc------------c--------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSA------------I-------- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~~------------~-------- 78 (241)
.++|.||+||||||+++.+++.+.+..|. +.++ +.++..- ..+++.. .
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~~G~--I~id-g~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~e 433 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGE--ILID-GIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE 433 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCe--EEEC-CEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHH
Confidence 79999999999999999999999987554 3333 3322110 1111100 0
Q ss_pred --------------------cchhhcC----CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH---HhC
Q 026207 79 --------------------GTARRMQ----VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI---AER 128 (241)
Q Consensus 79 --------------------~~~~~~~----~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~---~~~ 128 (241)
|.-..++ .+|+|++|+..+++++..+|+++++||+++.+|.+.-. ++ ...
T Consensus 434 ei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~ 513 (567)
T COG1132 434 EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK 513 (567)
T ss_pred HHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc
Confidence 0000111 24557799999999999999999999999999995422 21 235
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhc
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILE 178 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~ 178 (241)
+.|+++.+|..+ .+.+ +|+|+. .++.....+...++.+
T Consensus 514 ~rT~iiIaHRls--------ti~~----aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 514 GRTTLIIAHRLS--------TIKN----ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred CCEEEEEeccHh--------HHHh----CCEEEEEECCEEEEecCHHHHHH
Confidence 668777889886 3333 688887 4443222244444443
No 393
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.21 E-value=6.4e-12 Score=96.89 Aligned_cols=87 Identities=16% Similarity=0.359 Sum_probs=58.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc--------------------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS-------------------- 76 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~-------------------- 76 (241)
..+++|+||||||||||++.+++...+..|. ++++ +..+.. . ..+++.
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~--i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~ 87 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPPDSGS--ILIN-GKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE 87 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHESEEE--EEET-TEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred CCEEEEEccCCCccccceeeecccccccccc--cccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 3489999999999999999999999876332 4443 211110 0 000000
Q ss_pred ---ccc----chhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCC
Q 026207 77 ---AIG----TARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 77 ---~~~----~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~ 115 (241)
.++ ....+ ..+|.+++++..+++++..+|+++++|||++
T Consensus 88 ~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 88 VLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 000 00122 4567788999999999999999999999985
No 394
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.21 E-value=6.4e-11 Score=96.03 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=69.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC-CC------ccccccchhhcCCCCCcccHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG-DI------PHSAIGTARRMQVPEPSLQHK 94 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~ 94 (241)
++.+|+||||+|||+++.++.-.+...... .+....+........ .+ ....+..-...++++.+++++
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r 102 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSL 102 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHH
Confidence 399999999999999999988766432100 000000000000000 00 000000011234477788999
Q ss_pred HHHHHHHh----cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 95 VMIEAVEN----HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 95 ~~~~~~l~----~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
..++.++. .+|+++++|||.+.+|+.... .....|.++|+++|...
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~ 159 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE 159 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 99988875 589999999999999984332 33445789999999864
No 395
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.21 E-value=4.5e-11 Score=123.37 Aligned_cols=64 Identities=14% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|+|++||..+++++..+|++|+|||+++.+|.+... ... ..+.|+|+++|..+ .+++ ||
T Consensus 1359 LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--------ti~~----aD 1426 (1466)
T PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--------SIKR----SD 1426 (1466)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--------HHHh----CC
Confidence 5667899999999999999999999999999994332 222 24889999999886 3332 68
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|+.
T Consensus 1427 ~Ivv 1430 (1466)
T PTZ00265 1427 KIVV 1430 (1466)
T ss_pred EEEE
Confidence 8887
No 396
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.20 E-value=1.5e-10 Score=90.14 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=74.5
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccC---C----------------CeEEEEcCCcccCCC--------CCCcccc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEF---Q----------------KRVVIVDTSNEIGGD--------GDIPHSA 77 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~---g----------------~~v~~i~~~~e~~~~--------~~~~~~~ 77 (241)
...++-+.||+|||||||+.-+.+.+.++. | +.+..+.+..-+... ...|...
T Consensus 27 ~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~ 106 (213)
T COG4136 27 KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL 106 (213)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEecCccc
Confidence 344899999999999999999999998661 1 011111100000000 0001111
Q ss_pred ccchhh-------------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCc
Q 026207 78 IGTARR-------------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGV 130 (241)
Q Consensus 78 ~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~ 130 (241)
.|++++ -...|++.+.++.+.+++...|+.+++|||.+.+|.... .++...|+
T Consensus 107 KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agi 186 (213)
T COG4136 107 KGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGI 186 (213)
T ss_pred ccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 122111 123566789999999999999999999999999998432 24556799
Q ss_pred EEEEeecCC
Q 026207 131 MLIGTAHGE 139 (241)
Q Consensus 131 ~vi~t~H~~ 139 (241)
..+.++|..
T Consensus 187 Ptv~VTHD~ 195 (213)
T COG4136 187 PTVQVTHDL 195 (213)
T ss_pred CeEEEeccc
Confidence 999999976
No 397
>PLN03232 ABC transporter C family member; Provisional
Probab=99.20 E-value=3.7e-11 Score=124.56 Aligned_cols=113 Identities=14% Similarity=0.079 Sum_probs=77.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC------CeEEEEcCCcccCCCC----------CCccc------------cc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGDG----------DIPHS------------AI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g------~~v~~i~~~~e~~~~~----------~~~~~------------~~- 78 (241)
.++|+||+|||||||++.|++.+++..| ..+.|+++..-+.... ..... .+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~ 724 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLD 724 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHH
Confidence 8999999999999999999999988754 2466766443222110 00000 00
Q ss_pred ----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HH---HhCCcEEEEeecCCC
Q 026207 79 ----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI---AERGVMLIGTAHGEW 140 (241)
Q Consensus 79 ----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~---~~~g~~vi~t~H~~~ 140 (241)
|....+ ..+|+|++||..+++++..+|+++++|||++.+|++... .+ ...+.|+|.++|..+
T Consensus 725 ~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~ 801 (1495)
T PLN03232 725 LLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLH 801 (1495)
T ss_pred hCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChh
Confidence 000011 125668899999999999999999999999999985433 21 225789999899875
No 398
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.19 E-value=3.1e-10 Score=93.53 Aligned_cols=118 Identities=8% Similarity=-0.031 Sum_probs=69.9
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccC---------------CC--eEE--EEcCCcccCCCC-CCccccc----
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEF---------------QK--RVV--IVDTSNEIGGDG-DIPHSAI---- 78 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~---------------g~--~v~--~i~~~~e~~~~~-~~~~~~~---- 78 (241)
....++.+|+||||+||||++.++...+.... +. ..+ .++......... ...+...
T Consensus 18 ~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (198)
T cd03276 18 EFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFL 97 (198)
T ss_pred ecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHh
Confidence 44556889999999999999999886443220 10 011 111111000000 0000000
Q ss_pred --c--chhhcCCCCCcccHHHHHHHHH----hcCCcEEEEcCCCCHHhHHHH-------HHHHh---CCcEEEEeecCCC
Q 026207 79 --G--TARRMQVPEPSLQHKVMIEAVE----NHMPEVIIVDEIGTEAEAHAC-------RSIAE---RGVMLIGTAHGEW 140 (241)
Q Consensus 79 --~--~~~~~~~~~~~~~~~~~~~~~l----~~~p~vlilDE~~~~~d~~~~-------~~~~~---~g~~vi~t~H~~~ 140 (241)
. .......++.+++++..++.++ ..+|+++++|||++++|.... ....+ .+.++++++|..+
T Consensus 98 ~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 98 TSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred ccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 0 0112344566789999998888 589999999999999999432 23222 2357888889886
No 399
>PLN03130 ABC transporter C family member; Provisional
Probab=99.19 E-value=4.8e-11 Score=124.19 Aligned_cols=113 Identities=17% Similarity=0.130 Sum_probs=78.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC-C-----CeEEEEcCCcccCCCCC-------Cc--cc-------------cc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF-Q-----KRVVIVDTSNEIGGDGD-------IP--HS-------------AI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~-g-----~~v~~i~~~~e~~~~~~-------~~--~~-------------~~- 78 (241)
.++|+||+|||||||++.|++.+++.. | .++.|+++..-+..... .+ .. .+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~ 724 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLD 724 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHH
Confidence 799999999999999999999998875 3 24667664432221100 00 00 00
Q ss_pred ----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HH---HhCCcEEEEeecCCC
Q 026207 79 ----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SI---AERGVMLIGTAHGEW 140 (241)
Q Consensus 79 ----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~---~~~g~~vi~t~H~~~ 140 (241)
|....+ ..+|+|++||..+++++..+|+++++|||++.+|++... .+ ...|+|+|.++|..+
T Consensus 725 ~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~ 801 (1622)
T PLN03130 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLH 801 (1622)
T ss_pred hCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHh
Confidence 000011 125678899999999999999999999999999985432 22 225789999999875
No 400
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.19 E-value=1e-10 Score=98.33 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHHhcCC--cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p--~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
+|++++++..+++++..+| +++|+|||++++|+.... ...+.|.++|+++|..+ .+ .. |
T Consensus 138 LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~--------~~-~~---~ 205 (226)
T cd03270 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED--------TI-RA---A 205 (226)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH--------HH-Hh---C
Confidence 4567899999999999998 599999999999984332 34456899999999986 33 24 7
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+++.
T Consensus 206 d~i~~ 210 (226)
T cd03270 206 DHVID 210 (226)
T ss_pred CEEEE
Confidence 88876
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.19 E-value=1e-10 Score=93.37 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=69.9
Q ss_pred eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHH
Q 026207 23 KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 23 ~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (241)
....+ +++|+||||+||||+++++.-.+....+ ++.. ..+.......+.............+.+++++..++.++
T Consensus 17 ~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~-~~~~---~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L 92 (162)
T cd03227 17 TFGEGSLTIITGPNGSGKSTILDAIGLALGGAQS-ATRR---RSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALIL 92 (162)
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcch-hhhc---cCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHH
Confidence 33344 9999999999999999998776654421 1111 11100000011111000001122566788888888888
Q ss_pred hc----CCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 102 NH----MPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 102 ~~----~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
.. +|+++++|||.++.|+... .+....|.++++++|...
T Consensus 93 ~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~ 142 (162)
T cd03227 93 ALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred HhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 75 7899999999999988432 233334788999999886
No 402
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.18 E-value=8.8e-11 Score=99.00 Aligned_cols=176 Identities=14% Similarity=0.063 Sum_probs=90.0
Q ss_pred eEEeeCcceeeccEEEEEeCCCchHHHHH-HHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchhh
Q 026207 15 FYALYSINKIIFDFFLSYFRPGVGKTTVM-REIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTARR 83 (241)
Q Consensus 15 ~~~~~~~~~~~~g~vll~Gp~GsGKTTLl-~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~~ 83 (241)
+...++..-....+++|.|||||||||++ +.+++.+.+ |.+++|++ .++.... +..... ..+....
T Consensus 13 ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~-~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 89 (230)
T PRK08533 13 LHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVS-TQLTTTEFIKQMMSLGYDINKKLISGKLLY 89 (230)
T ss_pred eehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEe-CCCCHHHHHHHHHHhCCchHHHhhcCcEEE
Confidence 33444433333448999999999999996 455554443 47889988 4433211 000000 0000000
Q ss_pred cC---CCCCcccHHHH----HHHHHhcCCcEEEEcCCCCHH----hHHHH-------HHHHhCCcEEEEeecCCChhhhh
Q 026207 84 MQ---VPEPSLQHKVM----IEAVENHMPEVIIVDEIGTEA----EAHAC-------RSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 84 ~~---~~~~~~~~~~~----~~~~l~~~p~vlilDE~~~~~----d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
.. ..+.....+.. +......+|+++++|||++.. |+... ....+.|.+++.|+|........
T Consensus 90 ~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~ 169 (230)
T PRK08533 90 IPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESV 169 (230)
T ss_pred EEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEeccccccccc
Confidence 00 01111112222 233334579999999999887 43211 12335577888777755322111
Q ss_pred cCCccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCc--eEEEEEEc-CceE
Q 026207 146 KNPILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTF--YFLIEMRE-RHYW 197 (241)
Q Consensus 146 ~~p~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~--~~~fe~~~-~g~~ 197 (241)
. ..++++ ||.|+. -+.....+|.++.+|.|-..... ..-|++.+ .|+.
T Consensus 170 ~-~~~~~~---~DgvI~L~~~~~~~~~~R~i~V~KmR~~~~~~~~~~~f~i~~~~g~~ 223 (230)
T PRK08533 170 L-TILRTA---ATMLIRLEVKVFGGDLKNSAKIVKYNMAKGSFQKSIPFRVEPKIGLA 223 (230)
T ss_pred c-eeEEEe---eeEEEEEEEeecCCEEEEEEEEEEecCCccccCCEEEEEEcCCccEE
Confidence 1 145777 899986 22222223666667777423322 34566653 3653
No 403
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.18 E-value=5.5e-11 Score=98.16 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=62.1
Q ss_pred eeCcceeecc-EEEEEeCCCchHHHHHHHHHHhc-cccCCCeEEEEcCCcccCCC-CCCccccccc--hhhcCCCCCccc
Q 026207 18 LYSINKIIFD-FFLSYFRPGVGKTTVMREIARVL-SDEFQKRVVIVDTSNEIGGD-GDIPHSAIGT--ARRMQVPEPSLQ 92 (241)
Q Consensus 18 ~~~~~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l-~~~~g~~v~~i~~~~e~~~~-~~~~~~~~~~--~~~~~~~~~~~~ 92 (241)
+.+......+ .++|+||||+||||+++++++.. ....|..+ .....++... ....+..... ...+...+.+++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~--~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~ 97 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV--PAESASIPLVDRIFTRIGAEDSISDGRSTFMAELL 97 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc--cccccccCCcCEEEEEecCcccccCCceeHHHHHH
Confidence 3444445555 89999999999999999999432 12212111 0001111000 0000000000 000011111222
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEeecCCC
Q 026207 93 HKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 93 ~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t~H~~~ 140 (241)
+.........+|+++++|||+++.|+... ....+.+.++|+++|...
T Consensus 98 -~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~ 152 (202)
T cd03243 98 -ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHE 152 (202)
T ss_pred -HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHH
Confidence 22222333578999999999998888321 123445888999999765
No 404
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.18 E-value=4.7e-11 Score=123.66 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=78.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC--------C-Ccc----cccc----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG--------D-IPH----SAIG---------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~--------~-~~~----~~~~---------- 79 (241)
+++|+||+|||||||++.|+|.+++..|. ++.|+.+...+.... . ... ....
T Consensus 454 ~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~ 533 (1490)
T TIGR01271 454 LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIAL 533 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHh
Confidence 89999999999999999999999887543 355665432221100 0 000 0000
Q ss_pred ----ch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH-------HHhCCcEEEEeecCCC
Q 026207 80 ----TA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS-------IAERGVMLIGTAHGEW 140 (241)
Q Consensus 80 ----~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~-------~~~~g~~vi~t~H~~~ 140 (241)
.. .+-..+|+|++|+..+++++..+|+++++|||.+++|+..... ....|.++|.++|...
T Consensus 534 l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~ 609 (1490)
T TIGR01271 534 FPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLE 609 (1490)
T ss_pred ccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence 00 0112356788999999999999999999999999999954331 1224889999999986
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.18 E-value=9.2e-11 Score=96.77 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=63.4
Q ss_pred EeeCcceeecc-EEEEEeCCCchHHHHHHHHHHhccc-cCCCeEEEEcCCcccCCCCCCccccccchhhcCCC-------
Q 026207 17 ALYSINKIIFD-FFLSYFRPGVGKTTVMREIARVLSD-EFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP------- 87 (241)
Q Consensus 17 ~~~~~~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~-~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~------- 87 (241)
.+.+......+ +++|+||||||||||++++++...- ..|..+ . .... ..+ .......+.+.
T Consensus 15 ~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v---~-a~~~-----~~q-~~~l~~~~~~~d~l~~~~ 84 (199)
T cd03283 15 RVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPV---C-ASSF-----ELP-PVKIFTSIRVSDDLRDGI 84 (199)
T ss_pred eecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE---e-cCcc-----Ccc-cceEEEeccchhcccccc
Confidence 34555555555 8999999999999999999986521 113322 1 0000 000 00000011100
Q ss_pred CC---c-ccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEeecCCCh
Q 026207 88 EP---S-LQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGTAHGEWL 141 (241)
Q Consensus 88 ~~---~-~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t~H~~~~ 141 (241)
+. . .+...+++.+-..+|+++++|||+++.|+... ....+.|.++|.++|....
T Consensus 85 s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~ 150 (199)
T cd03283 85 SYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLEL 150 (199)
T ss_pred ChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHH
Confidence 00 0 11122222222238999999999998887322 1234568889999998863
No 406
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.17 E-value=2.4e-10 Score=102.81 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=84.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC----CeEEEEcCCcccCCCCCCcc----------------c------ccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ----KRVVIVDTSNEIGGDGDIPH----------------S------AIG-- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g----~~v~~i~~~~e~~~~~~~~~----------------~------~~~-- 79 (241)
++.+.||||.||||+++.|+|.+.|+.| .+|-|-.+......++.+.. . .+.
T Consensus 369 vigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i 448 (591)
T COG1245 369 VIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDL 448 (591)
T ss_pred EEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHH
Confidence 8999999999999999999999998855 23332221110000000000 0 000
Q ss_pred chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCChhhhhcCCccc
Q 026207 80 TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEWLENIIKNPILS 151 (241)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~~~~~~~~p~l~ 151 (241)
.-+++.-+|++..|++++++++..++|+.+||||.+.+|.+... .+.+++.+.+.+-|..-+.+
T Consensus 449 ~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~d-------- 520 (591)
T COG1245 449 LERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMID-------- 520 (591)
T ss_pred HhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhh--------
Confidence 01245567889999999999999999999999999999985332 34556788888889886333
Q ss_pred cccccccEEEe
Q 026207 152 DLIGGVDTVTL 162 (241)
Q Consensus 152 ~l~~~~d~V~~ 162 (241)
.+ +|+++.
T Consensus 521 yv---sDr~iv 528 (591)
T COG1245 521 YV---SDRLIV 528 (591)
T ss_pred hh---hceEEE
Confidence 33 788877
No 407
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.17 E-value=7.3e-11 Score=100.47 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=47.0
Q ss_pred CCCcccHHHHHHHHHhcC----CcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccc
Q 026207 87 PEPSLQHKVMIEAVENHM----PEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIG 155 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~----p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~ 155 (241)
++.+++++..++.++..+ |+++++|||++++|+.... .....|.++|+++|... +...
T Consensus 156 LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~---------~~~~-- 224 (247)
T cd03275 156 LSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE---------FFSK-- 224 (247)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH---------HHhh--
Confidence 345678888888888754 8999999999999984332 33445889999999853 2234
Q ss_pred cccEEEe
Q 026207 156 GVDTVTL 162 (241)
Q Consensus 156 ~~d~V~~ 162 (241)
||+++.
T Consensus 225 -~d~i~~ 230 (247)
T cd03275 225 -ADALVG 230 (247)
T ss_pred -CCeEEE
Confidence 788775
No 408
>PTZ00243 ABC transporter; Provisional
Probab=99.17 E-value=4.5e-11 Score=124.15 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=78.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-----CeEEEEcCCcccCCCC------C-Cccc--c-------------c--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDG------D-IPHS--A-------------I-- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-----~~v~~i~~~~e~~~~~------~-~~~~--~-------------~-- 78 (241)
+++|+||||||||||++.+++.+.+..| .++.|+.+...+.... . .+.. . +
T Consensus 688 ~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~ 767 (1560)
T PTZ00243 688 LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQ 767 (1560)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHH
Confidence 7999999999999999999999987744 2466666443221100 0 0000 0 0
Q ss_pred ---cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH-------HHhCCcEEEEeecCCC
Q 026207 79 ---GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS-------IAERGVMLIGTAHGEW 140 (241)
Q Consensus 79 ---~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~-------~~~~g~~vi~t~H~~~ 140 (241)
+.. .+...+|+|++++..+++++..+|+++++|||++.+|+..... ....|.++|.++|...
T Consensus 768 l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~ 843 (1560)
T PTZ00243 768 LGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH 843 (1560)
T ss_pred hhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 000 1123366788999999999999999999999999999853321 1235889999999875
No 409
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.16 E-value=7.1e-11 Score=122.35 Aligned_cols=67 Identities=7% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEE
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 160 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V 160 (241)
+|+|++|+..+++++..+|++|++||+++.+|...-. .....++|+|+.+|..+ .+.+ +|+|
T Consensus 1354 LSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~--------ti~~----~DrI 1421 (1490)
T TIGR01271 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE--------ALLE----CQQF 1421 (1490)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH--------HHHh----CCEE
Confidence 4557899999999999999999999999999985432 22235799999999875 3333 6888
Q ss_pred Ee-CCh
Q 026207 161 TL-GDE 165 (241)
Q Consensus 161 ~~-~~~ 165 (241)
+. .++
T Consensus 1422 lvL~~G 1427 (1490)
T TIGR01271 1422 LVIEGS 1427 (1490)
T ss_pred EEEECC
Confidence 77 443
No 410
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.14 E-value=2.5e-10 Score=97.37 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=40.2
Q ss_pred CCCcccHHHHHHHHHh----cCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCC
Q 026207 87 PEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGE 139 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~----~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~ 139 (241)
++.+++++..++.++. .+|+++++|||++++|+.... .....|.++|.++|..
T Consensus 167 lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~ 229 (251)
T cd03273 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKE 229 (251)
T ss_pred cCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 3446788888888876 478999999999999985433 1113588899999995
No 411
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.14 E-value=3.9e-10 Score=96.70 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCCcccHHHHHHHHHhcC---CcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 87 PEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~---p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
+|++++|+..+++++..+ |+++++|||++++|+.... ...+.|.++|+++|..+ .++ .
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~--------~i~-~--- 237 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD--------VIK-C--- 237 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHH-h---
Confidence 455779999999999885 7999999999999985432 34456899999999886 232 3
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
+|.++.
T Consensus 238 aD~ii~ 243 (261)
T cd03271 238 ADWIID 243 (261)
T ss_pred CCEEEE
Confidence 788776
No 412
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=101.71 Aligned_cols=123 Identities=18% Similarity=0.225 Sum_probs=83.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------------eEEEEcCCcccCC---------CCCCcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------------RVVIVDTSNEIGG---------DGDIPH 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------------~v~~i~~~~e~~~---------~~~~~~ 75 (241)
.+.|.|++|||||||-+++++++++. |. .+++-|....+.. ++...+
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh 393 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH 393 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhc
Confidence 69999999999999999999999876 22 1233331111110 000000
Q ss_pred c-cccc---------------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------H-HH
Q 026207 76 S-AIGT---------------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------R-SI 125 (241)
Q Consensus 76 ~-~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~-~~ 125 (241)
. .... .++-..+|++.+|+.++++++..+|+++++|||++.+|.... + .-
T Consensus 394 ~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ 473 (534)
T COG4172 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQ 473 (534)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHH
Confidence 0 0000 012334677889999999999999999999999999988322 1 22
Q ss_pred HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 126 AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 126 ~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|.+-++.+|..+ ++.-+ |+.|+.
T Consensus 474 ~k~~LsYLFISHDL~--------VvrAl---~~~viV 499 (534)
T COG4172 474 QKHGLSYLFISHDLA--------VVRAL---CHRVIV 499 (534)
T ss_pred HHhCCeEEEEeccHH--------HHHHh---hceEEE
Confidence 457889888889998 66667 888887
No 413
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.12 E-value=2.8e-10 Score=104.72 Aligned_cols=113 Identities=21% Similarity=0.260 Sum_probs=78.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC----------CeEEEEcCCcccCCC-----CCCcc----c--------cc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ----------KRVVIVDTSNEIGGD-----GDIPH----S--------AI-- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g----------~~v~~i~~~~e~~~~-----~~~~~----~--------~~-- 78 (241)
.+||+||+|||||+|+|.++++.+...| ..+.|+++..-.... -..|. . .+
T Consensus 463 ~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r 542 (659)
T KOG0060|consen 463 NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILR 542 (659)
T ss_pred eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHH
Confidence 6999999999999999999999974421 225555532211110 00010 0 00
Q ss_pred --------------c------chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHH--H--HHHHHhCCcEEEE
Q 026207 79 --------------G------TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH--A--CRSIAERGVMLIG 134 (241)
Q Consensus 79 --------------~------~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~--~--~~~~~~~g~~vi~ 134 (241)
+ ......++|+|.+||..++++.-++|++-||||-++..+.. . .+...+.|+|.|+
T Consensus 543 ~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iS 622 (659)
T KOG0060|consen 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFIS 622 (659)
T ss_pred HHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEE
Confidence 0 00124567778899999999999999999999999886652 2 2355678999999
Q ss_pred eecCCC
Q 026207 135 TAHGEW 140 (241)
Q Consensus 135 t~H~~~ 140 (241)
+.|..+
T Consensus 623 VgHRkS 628 (659)
T KOG0060|consen 623 VGHRKS 628 (659)
T ss_pred eccHHH
Confidence 999887
No 414
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.08 E-value=2.9e-10 Score=96.18 Aligned_cols=169 Identities=14% Similarity=0.071 Sum_probs=95.0
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchhhcCC--------
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTARRMQV-------- 86 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~~~~~-------- 86 (241)
...+++|.||||+||||+..+++...... |.+++|++ .+|.... +..... ..+...-+..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs-~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~~~ 97 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVA-LEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIGEA 97 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEE-eeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccccccc
Confidence 34489999999999999998877654333 67889887 3332110 000000 0000000000
Q ss_pred -------CCCcccHH----HHHHHHHhcCCcEEEEcCCCCHHh--H----H----HHHHHHhCCcEEEEeecCCChhhhh
Q 026207 87 -------PEPSLQHK----VMIEAVENHMPEVIIVDEIGTEAE--A----H----ACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 87 -------~~~~~~~~----~~~~~~l~~~p~vlilDE~~~~~d--~----~----~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
........ .+.+.....++++++||.++.... + + ....+++.|++++.|.|.....+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~~~~~~~~~ 177 (237)
T TIGR03877 98 AEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQVSVGERGF 177 (237)
T ss_pred cccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccccc
Confidence 00011222 223333456899999999886421 1 1 1124567899999998876523323
Q ss_pred cCCccccccccccEEEe---CChHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEE
Q 026207 146 KNPILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPT-FYFLIEMRERHYWV 198 (241)
Q Consensus 146 ~~p~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~ 198 (241)
..+.++++ +|.|+. -......+|.++.+|.|..+.. -...|+++.+|+.+
T Consensus 178 ~~~~~~~~---~D~vI~L~~~~~~~~~~R~l~i~K~Rg~~~~~~~~~~~It~~Gi~v 231 (237)
T TIGR03877 178 GGPGVEHA---VDGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEITDKGIIV 231 (237)
T ss_pred cccceEEE---EeEEEEEEEEeeCCceEEEEEEEECCCCCCCCceEEEEEcCCCEEE
Confidence 33567888 999996 1111222366777777744333 33568888888843
No 415
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.07 E-value=2e-10 Score=106.83 Aligned_cols=176 Identities=11% Similarity=0.132 Sum_probs=106.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC----------------CCC--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV----------------PEP-- 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~----------------~~~-- 89 (241)
+++|.||||+|||||+.+++...... |.+++|+. .+|.. .+...++.+++. .+.
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s-~eEs~------~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACAN-KERAILFA-YEESR------AQLLRNAYSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE-eeCCH------HHHHHHHHHcCCChHHHhhCCcEEEEEcccccC
Confidence 79999999999999999999887655 68999998 66652 222222211111 111
Q ss_pred --cccHHHHHHHHHhcCCcEEEEcCCCCHHhH-----------HHHHHHHhCCcEEEEeecCCChhh--hhcCCcccccc
Q 026207 90 --SLQHKVMIEAVENHMPEVIIVDEIGTEAEA-----------HACRSIAERGVMLIGTAHGEWLEN--IIKNPILSDLI 154 (241)
Q Consensus 90 --~~~~~~~~~~~l~~~p~vlilDE~~~~~d~-----------~~~~~~~~~g~~vi~t~H~~~~~~--~~~~p~l~~l~ 154 (241)
+.....+.+.+...+|+++++|.+++.... .....+++.|++++.|.-.....+ ....+.+..+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~~~~~~~~~~~~~~~~s~l- 415 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNTSDQFMGSHSITDSHISTI- 415 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeecccccccCCccCCCCeeEe-
Confidence 123344555666779999999999876321 122356788999888733222111 1222356778
Q ss_pred ccccEEEe---CChHHHHHHHHHhhhccCCC-CCceEEEEEEcCceEEeecchHHHHHHhcCCCc
Q 026207 155 GGVDTVTL---GDEEARARRCQKSILERKAP-PTFYFLIEMRERHYWVTHKTEKSVDMLLRGKTP 215 (241)
Q Consensus 155 ~~~d~V~~---~~~~~~~~~~~~~~k~r~g~-~~~~~~fe~~~~g~~~~~~~~~~~~~~l~G~~~ 215 (241)
+|.|++ -+.....+|.+..+|.|... ..-..-|+++.+|+-+... -....-++.|...
T Consensus 416 --~D~ii~l~~~e~~g~~~r~i~V~K~R~~~~~~~~~~~~It~~Gi~v~~~-~~~~~~~~~g~~~ 477 (484)
T TIGR02655 416 --TDTILMLQYVEIRGEMSRAINVFKMRGSWHDKGIREFMISDKGPEIKDS-FRNFERIISGSPT 477 (484)
T ss_pred --eeEEEEEEEEecCCEEEEEEEEEEccCCCCCCceEEEEEcCCcEEEccc-ccCCcceEcCCCc
Confidence 999987 22223234677778887543 3345668888999855322 1223444555544
No 416
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.07 E-value=4.7e-10 Score=94.62 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=89.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCcccc--ccchh-------hcCCCCCc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSA--IGTAR-------RMQVPEPS 90 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~--~~~~~-------~~~~~~~~ 90 (241)
++++.|+||+||||+..+++...... |.+++|++. ++.... +...... .+... .....+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~-e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~ 104 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITT-ENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNSTL 104 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEc-CCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcch
Confidence 89999999999999999997654333 689999983 332110 0000000 00000 00000111
Q ss_pred --ccHHHHHHHHHhcCCcEEEEcCCCCHHhH---HH-------HHHHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 91 --LQHKVMIEAVENHMPEVIIVDEIGTEAEA---HA-------CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 91 --~~~~~~~~~~l~~~p~vlilDE~~~~~d~---~~-------~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.....+...+...+|+++++||++...+. .. +......|.+++.++|.....+... ..+.++ +|
T Consensus 105 ~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~-~~~~~l---~D 180 (234)
T PRK06067 105 ANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELL-SRIRSI---CD 180 (234)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHH-HHHHhh---eE
Confidence 11122233333459999999999955332 11 1223556889899888765211111 245677 88
Q ss_pred EEEe---CChHHHHHHHHHhhhccCCCCC--ceEEEEEEc-CceEE
Q 026207 159 TVTL---GDEEARARRCQKSILERKAPPT--FYFLIEMRE-RHYWV 198 (241)
Q Consensus 159 ~V~~---~~~~~~~~~~~~~~k~r~g~~~--~~~~fe~~~-~g~~~ 198 (241)
.++. .+.....+|.++..|.|-.+.. -...|+++. +|+-+
T Consensus 181 gvI~L~~~~~~~~~~r~l~i~K~Rg~~~~~~~~~~~~I~~~~Gi~v 226 (234)
T PRK06067 181 VYLKLRAEQIGGRYVKVLEVVKLRGARKTTGNIISFDVDPAFGIKI 226 (234)
T ss_pred EEEEEEeeccCCEEeEEEEEEhhcCCCCCCCCEEEEEEcCCCCeEE
Confidence 8775 2222223366777777744333 345688875 58743
No 417
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.05 E-value=1.2e-09 Score=87.22 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=79.5
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcc---cC-------------CCCCCccc------------
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE---IG-------------GDGDIPHS------------ 76 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e---~~-------------~~~~~~~~------------ 76 (241)
+..+..|.|++|||||||++++++.+.|+.| .+.|...... +. ..+++.+.
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~rl~p~~G-~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG 109 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGRLTPDAG-TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAG 109 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhcccCCCCC-eEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccC
Confidence 4448999999999999999999999998854 4444431110 00 00111110
Q ss_pred -c------------ccc--------hh-----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-
Q 026207 77 -A------------IGT--------AR-----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR- 123 (241)
Q Consensus 77 -~------------~~~--------~~-----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~- 123 (241)
+ .|. .. +-..++++++|+..+++-+...|.++|+|||+.++|.....
T Consensus 110 ~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQAR 189 (258)
T COG4107 110 GNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 189 (258)
T ss_pred CccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHH
Confidence 0 000 00 11235678899999999999999999999999999883222
Q ss_pred -------HHHhCCcEEEEeecCCChhhhh
Q 026207 124 -------SIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 124 -------~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
...+-|..+++++|.......+
T Consensus 190 LLDllrgLv~~l~la~viVTHDl~VarLl 218 (258)
T COG4107 190 LLDLLRGLVRELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHHHHHHHHHhcCceEEEEechhHHHHHh
Confidence 2234577889999998744444
No 418
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.03 E-value=1.6e-09 Score=81.94 Aligned_cols=111 Identities=23% Similarity=0.256 Sum_probs=66.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|.||||+||||+++.++..+... +..+++++ ..............................+..++.+....|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYID-GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEEC-CEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 3578999999999999999999998755 23577777 332211100000000000001111223456667777777778
Q ss_pred cEEEEcCCCCHHhHHHHH-------------HHHhCCcEEEEeecC
Q 026207 106 EVIIVDEIGTEAEAHACR-------------SIAERGVMLIGTAHG 138 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~-------------~~~~~g~~vi~t~H~ 138 (241)
+++++||+....+..... .....+..++++.|.
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 999999998876653322 123346668887773
No 419
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.4e-09 Score=96.53 Aligned_cols=110 Identities=13% Similarity=0.236 Sum_probs=76.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------------------------C-CCccccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------------------------G-DIPHSAIGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------------------------~-~~~~~~~~~ 80 (241)
++.|+|.|||||||+++.+.|+..|+.|. ++++ +.-...+ . ..++..-.+
T Consensus 351 lvFliG~NGsGKST~~~LLtGL~~PqsG~--I~ld-g~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~ 427 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGE--ILLD-GKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKW 427 (546)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCc--eeEC-CccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHH
Confidence 89999999999999999999999999777 6665 2211110 0 000000000
Q ss_pred hhh---------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeec
Q 026207 81 ARR---------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAH 137 (241)
Q Consensus 81 ~~~---------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H 137 (241)
..+ ..-.|.|++.+.++-.++..+-+++++||-.+..||.-.+ ..++.|+||++.+|
T Consensus 428 LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsH 507 (546)
T COG4615 428 LQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507 (546)
T ss_pred HHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEec
Confidence 000 1113456788888888888888999999999999984332 56788999999999
Q ss_pred CCC
Q 026207 138 GEW 140 (241)
Q Consensus 138 ~~~ 140 (241)
...
T Consensus 508 Dd~ 510 (546)
T COG4615 508 DDH 510 (546)
T ss_pred Cch
Confidence 885
No 420
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.02 E-value=5.8e-10 Score=100.31 Aligned_cols=62 Identities=19% Similarity=0.154 Sum_probs=50.2
Q ss_pred hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhh
Q 026207 83 RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~ 144 (241)
.+..+|++..|+.++++++..++|+.++|||.+.+|.... +...+.++.|+.+-|....-+.
T Consensus 210 ~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred hhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHH
Confidence 3455788889999999999999999999999999998433 3445558999999999973333
No 421
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.02 E-value=7.6e-10 Score=101.06 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=78.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC-------CCeEEEEcCCcccCCCC-----CCcc------------ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF-------QKRVVIVDTSNEIGGDG-----DIPH------------SAI----- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~-------g~~v~~i~~~~e~~~~~-----~~~~------------~~~----- 78 (241)
-+||+||||||||+|.+.+.|+.+-.. ..++.|+++..-..... ..|. +.+
T Consensus 510 hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~ 589 (728)
T KOG0064|consen 510 HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILD 589 (728)
T ss_pred eEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHH
Confidence 499999999999999999999987431 12355555332221100 0010 000
Q ss_pred ------------c---chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH----HHHHHHHhCCcEEEEeecCC
Q 026207 79 ------------G---TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA----HACRSIAERGVMLIGTAHGE 139 (241)
Q Consensus 79 ------------~---~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~----~~~~~~~~~g~~vi~t~H~~ 139 (241)
| .+..-.++++|.+|+..+++..-|+|...++||.++...+ .....+++.|++++..+|..
T Consensus 590 ~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrp 669 (728)
T KOG0064|consen 590 IVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRP 669 (728)
T ss_pred HhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCc
Confidence 0 0012345677889999999999999999999999987554 23346778899999999998
Q ss_pred Ch
Q 026207 140 WL 141 (241)
Q Consensus 140 ~~ 141 (241)
++
T Consensus 670 sl 671 (728)
T KOG0064|consen 670 SL 671 (728)
T ss_pred cH
Confidence 74
No 422
>PRK04328 hypothetical protein; Provisional
Probab=99.02 E-value=6.5e-10 Score=94.80 Aligned_cols=168 Identities=15% Similarity=0.063 Sum_probs=94.5
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchhhcCCCC-------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTARRMQVPE------- 88 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~~~~~~~------- 88 (241)
..+++|.||||+|||+|..+++..-... |.+++|++ .+|.... +..... ..+...-+....
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis-~ee~~~~i~~~~~~~g~d~~~~~~~~~l~iid~~~~~~~~~~ 100 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVA-LEEHPVQVRRNMRQFGWDVRKYEEEGKFAIVDAFTGGIGSAA 100 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEE-eeCCHHHHHHHHHHcCCCHHHHhhcCCEEEEecccccccccc
Confidence 3489999999999999999877653333 57888887 3332110 000000 000000000000
Q ss_pred --------CcccH----HHHHHHHHhcCCcEEEEcCCCCHHh--H----H----HHHHHHhCCcEEEEeecCCChhhhhc
Q 026207 89 --------PSLQH----KVMIEAVENHMPEVIIVDEIGTEAE--A----H----ACRSIAERGVMLIGTAHGEWLENIIK 146 (241)
Q Consensus 89 --------~~~~~----~~~~~~~l~~~p~vlilDE~~~~~d--~----~----~~~~~~~~g~~vi~t~H~~~~~~~~~ 146 (241)
..... ..+.+.....+|+++++|.+++... + . ....+++.|++++.|.|...-++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e~~~~~~~~~ 180 (249)
T PRK04328 101 KREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQVSVGERGFG 180 (249)
T ss_pred ccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECccccccccC
Confidence 00111 2233344456899999999875421 1 1 11235678999999988875233344
Q ss_pred CCccccccccccEEEe-C--ChHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEE
Q 026207 147 NPILSDLIGGVDTVTL-G--DEEARARRCQKSILERKAPPT-FYFLIEMRERHYWV 198 (241)
Q Consensus 147 ~p~l~~l~~~~d~V~~-~--~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~ 198 (241)
++.++++ ||.|+. . +.....+|.++..|.|..+-+ -...|+++..|+.+
T Consensus 181 ~~~~~~~---~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~~~It~~Gi~v 233 (249)
T PRK04328 181 GPGVEHA---VDGIIRLDLDEIDGELKRSLIVWKMRGTKHSMRRHPFEITDKGIVV 233 (249)
T ss_pred CCCcEEE---EEEEEEEEEEecCCcEEEEEEEEEccCCCCCCceEEEEEcCCCEEE
Confidence 5667888 999996 1 111222366666777744322 34568888888843
No 423
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.00 E-value=1.1e-09 Score=89.26 Aligned_cols=106 Identities=13% Similarity=0.168 Sum_probs=56.4
Q ss_pred EEEEEeCCCchHHHHHHHHHH-hccccCCC-------eEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR-VLSDEFQK-------RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEA 99 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~-~l~~~~g~-------~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (241)
+++|+||||+||||++++++- .+-.+.|. ++.+++.-...... ..... .....++.+++ .+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~----~d~~~--~~~s~fs~~~~---~l~~ 71 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGA----SDSLA--QGLSTFMVEMK---ETAN 71 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCC----CCchh--ccccHHHHHHH---HHHH
Confidence 478999999999999999983 22222121 11111100000000 00000 00111111222 2444
Q ss_pred HHhc--CCcEEEEcCCCCHHhHHHH--------HHHHh-CCcEEEEeecCCChh
Q 026207 100 VENH--MPEVIIVDEIGTEAEAHAC--------RSIAE-RGVMLIGTAHGEWLE 142 (241)
Q Consensus 100 ~l~~--~p~vlilDE~~~~~d~~~~--------~~~~~-~g~~vi~t~H~~~~~ 142 (241)
++.. +|+++++|||+++.|+... ....+ .+.+++.++|...+.
T Consensus 72 ~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~ 125 (185)
T smart00534 72 ILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELT 125 (185)
T ss_pred HHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH
Confidence 4444 8999999999999887421 12233 378899999987633
No 424
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.99 E-value=1.3e-09 Score=99.80 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=45.2
Q ss_pred cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----HHhCCc-EEEEeecCCC
Q 026207 84 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----IAERGV-MLIGTAHGEW 140 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~~~~g~-~vi~t~H~~~ 140 (241)
+.-+|+|.+.|.++++++-.+|++++||||++.+|..++.. .+.-.. +++.++|.-+
T Consensus 219 ~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QD 280 (614)
T KOG0927|consen 219 VKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQD 280 (614)
T ss_pred hhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchh
Confidence 34467788999999999999999999999999999987752 223233 7888888765
No 425
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.98 E-value=1.7e-09 Score=90.59 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=94.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccccccchhhcCCC--C-Ccc--c
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSAIGTARRMQVP--E-PSL--Q 92 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~~~~~~~~~~~--~-~~~--~ 92 (241)
..+++|.|+||+|||++..+++...... |.+++|++ .++.... +......... .+.+. + ... .
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s-~e~~~~~l~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYIS-LEEREERILGYAKSKGWDLEDYIDK--SLYIVRLDPSDFKTS 91 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEE-CCCCHHHHHHHHHHcCCChHHHHhC--CeEEEecCHHHHHhh
Confidence 4589999999999999999888654334 68899997 4443210 0000000000 00000 0 000 0
Q ss_pred HHH----HHHHHHhcCCcEEEEcCCCCHHh-----H-------HHHHHHHhCCcEEEEeecCCChhhhhcCC-ccccccc
Q 026207 93 HKV----MIEAVENHMPEVIIVDEIGTEAE-----A-------HACRSIAERGVMLIGTAHGEWLENIIKNP-ILSDLIG 155 (241)
Q Consensus 93 ~~~----~~~~~l~~~p~vlilDE~~~~~d-----~-------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~l~~ 155 (241)
... +...+...+++++++|.++.... . ......++.|.++++++|.+........+ .++++
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l-- 169 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYL-- 169 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEE--
Confidence 111 11223346899999999775421 1 12224567799999999976511111112 36788
Q ss_pred cccEEEe-C-C--hH-HHHHHHHHhhhccCC-CCCceEEEEEEcCceEE
Q 026207 156 GVDTVTL-G-D--EE-ARARRCQKSILERKA-PPTFYFLIEMRERHYWV 198 (241)
Q Consensus 156 ~~d~V~~-~-~--~~-~~~~~~~~~~k~r~g-~~~~~~~fe~~~~g~~~ 198 (241)
||.|+. . . +. ...++.++.+|.|.. ...-...|++++.|+-+
T Consensus 170 -~D~vI~L~~~~~~~~~~~~r~l~v~K~Rg~~~~~~~~~~~i~~~Gi~v 217 (224)
T TIGR03880 170 -ADGVIILKYVRNSDLRDVRLAVEVVKMRRSKHSREIKPYEITDSGITV 217 (224)
T ss_pred -EeEEEEEeeeecccCcceEEEEEEEEccCCCCCCceEEEEEcCCcEEE
Confidence 999997 2 1 11 222345677888865 34466789999999843
No 426
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.98 E-value=3.7e-09 Score=88.15 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=30.3
Q ss_pred eEEEEEeEEeeCc--ceeeccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 9 LLIVKFFYALYSI--NKIIFDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 9 ~~~~r~~~~~~~~--~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
++.++.++.. .. .....++.+|+||||+||||++.++.-.+.
T Consensus 5 ~i~i~nfr~~-~~~~i~~~~g~n~i~G~NgsGKS~lleAi~~~l~ 48 (213)
T cd03277 5 RIKLENFVTY-DETEFRPGPSLNMIIGPNGSGKSSIVCAICLGLG 48 (213)
T ss_pred EEEEeCCCCc-ceeEEecCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455555543 33 233457899999999999999999987764
No 427
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.98 E-value=6.3e-10 Score=101.74 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=75.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCe-------EEEEcC--CcccCCC--------CCCc--------cccccch-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKR-------VVIVDT--SNEIGGD--------GDIP--------HSAIGTA- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~-------v~~i~~--~~e~~~~--------~~~~--------~~~~~~~- 81 (241)
-+.++||||||||||++.+.+.+.|..|.- +.+..+ ..+...+ ...+ ...+|++
T Consensus 418 rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfg 497 (614)
T KOG0927|consen 418 RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFG 497 (614)
T ss_pred ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhC
Confidence 389999999999999999999998874321 111110 0000000 0000 0011111
Q ss_pred -------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HHHh-CCcEEEEeecCCChhhhh
Q 026207 82 -------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SIAE-RGVMLIGTAHGEWLENII 145 (241)
Q Consensus 82 -------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~~~-~g~~vi~t~H~~~~~~~~ 145 (241)
..+..+|.+++.++.++.+...+|.+++||||++++|...+. .+.+ -.-.|+.++|..-+-+.+
T Consensus 498 Ltgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qV 572 (614)
T KOG0927|consen 498 LTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQV 572 (614)
T ss_pred CCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHH
Confidence 123446778899999999999999999999999999986554 3433 234588888988744433
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.97 E-value=2.9e-09 Score=88.80 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=58.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHH--hccccCCC-------eEEEEcCCcccCCCCCCccccccchhhcCCCCC--cccHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR--VLSDEFQK-------RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP--SLQHKV 95 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~--~l~~~~g~-------~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 95 (241)
..++|+||||+||||+++.++. .++.. |. ++.+.++-...... ...+ ..-.+. ..-++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~-G~~v~a~~~~~~~~d~i~~~l~~----~~si-----~~~~S~f~~el~~l 99 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHI-GSFVPADSATIGLVDKIFTRMSS----RESV-----SSGQSAFMIDLYQV 99 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhC-CCeeEcCCcEEeeeeeeeeeeCC----ccCh-----hhccchHHHHHHHH
Confidence 4799999999999999999984 33222 22 11222210000000 0000 000011 112344
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHhHHH--------HHHHHhC---CcEEEEeecCCChhh
Q 026207 96 MIEAVENHMPEVIIVDEIGTEAEAHA--------CRSIAER---GVMLIGTAHGEWLEN 143 (241)
Q Consensus 96 ~~~~~l~~~p~vlilDE~~~~~d~~~--------~~~~~~~---g~~vi~t~H~~~~~~ 143 (241)
........+|.++++|||+++.|+.. +....+. +.++++++|......
T Consensus 100 ~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~ 158 (213)
T cd03281 100 SKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFN 158 (213)
T ss_pred HHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHH
Confidence 44555567899999999999987631 1223333 247899999886443
No 429
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.96 E-value=3.1e-09 Score=98.83 Aligned_cols=188 Identities=15% Similarity=0.023 Sum_probs=103.4
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCcccc--ccchhhcCC--------
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSA--IGTARRMQV-------- 86 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~--~~~~~~~~~-------- 86 (241)
...+++|.||||||||||..+++..-....|.+++|+. .+|.... +...... .+...-+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs-~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~~~ 98 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT-FEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEGQD 98 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE-EecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhcccc
Confidence 34489999999999999999986543222247888887 4443211 0000000 000000000
Q ss_pred CCCcccH----HHHHHHHHhcCCcEEEEcCCCCHH---hH---------HHHHHHHhCCcEEEEeecCCChhhhhcCCcc
Q 026207 87 PEPSLQH----KVMIEAVENHMPEVIIVDEIGTEA---EA---------HACRSIAERGVMLIGTAHGEWLENIIKNPIL 150 (241)
Q Consensus 87 ~~~~~~~----~~~~~~~l~~~p~vlilDE~~~~~---d~---------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l 150 (241)
....... ......+-..+++.++||.+.... +. ..+...++.|++++.++|..+.......+.+
T Consensus 99 ~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~ 178 (484)
T TIGR02655 99 VVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGV 178 (484)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCc
Confidence 0001111 223334445689999999765432 11 1122456679999999998753222333334
Q ss_pred -ccccccccEEEe-C--ChHHHHHHHHHhhhccCCCCC--ceEEEEEEcCceEEeec----------------chHHHHH
Q 026207 151 -SDLIGGVDTVTL-G--DEEARARRCQKSILERKAPPT--FYFLIEMRERHYWVTHK----------------TEKSVDM 208 (241)
Q Consensus 151 -~~l~~~~d~V~~-~--~~~~~~~~~~~~~k~r~g~~~--~~~~fe~~~~g~~~~~~----------------~~~~~~~ 208 (241)
+.+ ||.|+. . ......+|.++.+|.| |... -...|+++++|+.+... .-..+|.
T Consensus 179 ~e~l---aDgVI~L~~~~~~~~~~R~l~I~K~R-gs~~~~~~~~~~It~~Gi~v~p~~~~~~~~~~~~~~~~tGi~~lD~ 254 (484)
T TIGR02655 179 EEFV---SDNVVILRNVLEGERRRRTLEILKLR-GTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDE 254 (484)
T ss_pred eeEe---eeeEEEEEEEecCCEEEEEEEEEECC-CCCcCCceEEEEEcCCcEEEEecccccccccccccccCCChHhHHH
Confidence 777 999996 1 1111223677778887 4332 23468888888733210 0144788
Q ss_pred HhcCCCccc
Q 026207 209 LLRGKTPLV 217 (241)
Q Consensus 209 ~l~G~~~~~ 217 (241)
++.|+.|.-
T Consensus 255 ~lgGG~~~g 263 (484)
T TIGR02655 255 MCGGGFFKD 263 (484)
T ss_pred HhcCCccCC
Confidence 888887753
No 430
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.95 E-value=3.3e-09 Score=107.23 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=93.0
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCC-----CeEEEEcCCcccC----------CCCCCccc-----------
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIG----------GDGDIPHS----------- 76 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g-----~~v~~i~~~~e~~----------~~~~~~~~----------- 76 (241)
+..| +++++||.|||||+|+.+++|.++...| ..+.|+++..=+. +.....+.
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~ 623 (1381)
T KOG0054|consen 544 IKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALK 623 (1381)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCH
Confidence 4444 8999999999999999999999987643 2355665321110 00000000
Q ss_pred -c-----ccchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCC
Q 026207 77 -A-----IGTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGE 139 (241)
Q Consensus 77 -~-----~~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~ 139 (241)
+ .|....+ -.+|+|++||..+|+|.-+++|+.++|.|.+..|++... ....+++|+|.++|..
T Consensus 624 ~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql 703 (1381)
T KOG0054|consen 624 KDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL 703 (1381)
T ss_pred hHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch
Confidence 0 0000011 125678899999999999999999999999999995443 3344689999999966
Q ss_pred ChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhh
Q 026207 140 WLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSIL 177 (241)
Q Consensus 140 ~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k 177 (241)
. .+.+ ||.|++ .++.....+...+++
T Consensus 704 ~--------~L~~----ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 704 Q--------FLPH----ADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred h--------hhhh----CCEEEEecCCeEecccCHHHHH
Confidence 4 3444 688888 555443335555554
No 431
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.95 E-value=3.5e-09 Score=90.81 Aligned_cols=164 Identities=13% Similarity=0.031 Sum_probs=92.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCcccc------ccc-----hhhcCCCCC-c----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSA------IGT-----ARRMQVPEP-S---- 90 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~------~~~-----~~~~~~~~~-~---- 90 (241)
.+++|+||||+||||+..+++...... |.+++|++ .++.... ..+.. .+. ...+-..+. .
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis-~Ee~~~~--~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~ 112 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVT-VESPANF--VYTSLKERAKAMGVDFDKIEENIILIDAASSTEL 112 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEE-ecCCchH--HHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhh
Confidence 389999999999999999987765444 67899998 3332100 00000 000 000111110 0
Q ss_pred -ccHHHH----HHHHHhcCCcEEEEcCCCCHHhH--H--------HHHHHHhCCcEEEEeecCCChhh----hhc-CCcc
Q 026207 91 -LQHKVM----IEAVENHMPEVIIVDEIGTEAEA--H--------ACRSIAERGVMLIGTAHGEWLEN----IIK-NPIL 150 (241)
Q Consensus 91 -~~~~~~----~~~~l~~~p~vlilDE~~~~~d~--~--------~~~~~~~~g~~vi~t~H~~~~~~----~~~-~p~l 150 (241)
...... ...+...+|+++|+|.+++.... . ....+++.|++++++.|..+... ... ...+
T Consensus 113 ~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~~~~~~~~~~~~ 192 (259)
T TIGR03878 113 RENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQKRSGHEELSAEAAGGYAV 192 (259)
T ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEeccccCcccccccccCCcce
Confidence 112222 23344668999999999753211 1 11245677999888887543111 111 2257
Q ss_pred ccccccccEEEe-CC--------------hHHHHHHHHHhhhccCCC-CCceEEEEEEcCceE
Q 026207 151 SDLIGGVDTVTL-GD--------------EEARARRCQKSILERKAP-PTFYFLIEMRERHYW 197 (241)
Q Consensus 151 ~~l~~~~d~V~~-~~--------------~~~~~~~~~~~~k~r~g~-~~~~~~fe~~~~g~~ 197 (241)
+++ ||.|+. .. ......|.++.+|.|... ..-...|+++++|+.
T Consensus 193 ~~l---~D~vI~L~~~~~~~~~~~~~~~~~~~~~~R~l~I~KmRg~~h~~~~~~~~It~~Gi~ 252 (259)
T TIGR03878 193 SHI---VDGTIVLAKQLIMSRFDASLYKKPIGEIVRLFRIDGCRMCGHDTKTHVLEIDETGLV 252 (259)
T ss_pred eEe---eccEEEEeeeeccchhhhhhccccccceEEEEEEEEccCCCCCCceeEEEEcCCceE
Confidence 788 899886 31 112223666667877532 334567888888864
No 432
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=7.9e-10 Score=99.17 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=74.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCC-------cc----cCCC-CCCcccc----ccch----
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTS-------NE----IGGD-GDIPHSA----IGTA---- 81 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~-------~e----~~~~-~~~~~~~----~~~~---- 81 (241)
|.|.||||.|||||++.+.+.+.|..| .++..+++- ++ +.-. ...|++. +|.+
T Consensus 616 iaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~s 695 (807)
T KOG0066|consen 616 IAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLAS 695 (807)
T ss_pred eEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhh
Confidence 999999999999999999999987733 134444321 11 1000 1111111 1110
Q ss_pred ----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HHHh-CCcEEEEeecCCC
Q 026207 82 ----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SIAE-RGVMLIGTAHGEW 140 (241)
Q Consensus 82 ----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~~~-~g~~vi~t~H~~~ 140 (241)
..+.-++++.+.++.++.+-...||+||||||++.+|.+.+. .+.+ -.-.||+++|...
T Consensus 696 HAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeR 762 (807)
T KOG0066|consen 696 HAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDER 762 (807)
T ss_pred ccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccc
Confidence 124446788999999999999999999999999999986554 3332 2445777778764
No 433
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.95 E-value=1.6e-09 Score=98.29 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=72.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCcccc--------------------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHSA-------------------- 77 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~~-------------------- 77 (241)
..+.+.||+|+||||+++.+.+...-..|. +.+| +.++.. . +.+|+..
T Consensus 565 ktvAlVG~SGaGKSTimRlLfRffdv~sGs--I~iD-gqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asn 641 (790)
T KOG0056|consen 565 KTVALVGPSGAGKSTIMRLLFRFFDVNSGS--ITID-GQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASN 641 (790)
T ss_pred cEEEEECCCCCchhHHHHHHHHHhhccCce--EEEc-CchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCCh
Confidence 379999999999999999999988655333 4444 322210 0 1222210
Q ss_pred --------------------ccchhhcC----CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHH---HHHHH---Hh
Q 026207 78 --------------------IGTARRMQ----VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAH---ACRSI---AE 127 (241)
Q Consensus 78 --------------------~~~~~~~~----~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~---~~~~~---~~ 127 (241)
-|+..+++ -+|+|.+|++++++.....|.+|++||.++.+|-. ++..+ .-
T Consensus 642 eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc 721 (790)
T KOG0056|consen 642 EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC 721 (790)
T ss_pred HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh
Confidence 00111111 25677899999999999999999999999998872 22211 12
Q ss_pred CCcEEEEeecCCC
Q 026207 128 RGVMLIGTAHGEW 140 (241)
Q Consensus 128 ~g~~vi~t~H~~~ 140 (241)
.|.|-|.+.|..+
T Consensus 722 a~RTtIVvAHRLS 734 (790)
T KOG0056|consen 722 ANRTTIVVAHRLS 734 (790)
T ss_pred cCCceEEEeeeeh
Confidence 4667667778876
No 434
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.94 E-value=9.9e-09 Score=91.37 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=53.5
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HH-HHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RS-IAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~-~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
+|++.+|+++++.++..+|+++|-|||++.+|.... +. -.+.|..++..+|..+ .+.++ +|
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~--------iVr~~---AD 226 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG--------IVRKF---AD 226 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH--------HHHHh---hh
Confidence 567889999999999999999999999999998322 12 2356899999999998 66777 78
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|..
T Consensus 227 rV~V 230 (534)
T COG4172 227 RVYV 230 (534)
T ss_pred hEEE
Confidence 8776
No 435
>PRK04296 thymidine kinase; Provisional
Probab=98.94 E-value=6.6e-09 Score=85.09 Aligned_cols=124 Identities=17% Similarity=0.235 Sum_probs=71.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC-cccCCCCCCccccccchhhcCCCCC---cccHHHHHHHH--H
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS-NEIGGDGDIPHSAIGTARRMQVPEP---SLQHKVMIEAV--E 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~-~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--l 101 (241)
+++++||+|+||||++..++...... +.+++++... .+....... +.+++..-. .......+..+ .
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~~~~~~i-------~~~lg~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDRYGEGKV-------VSRIGLSREAIPVSSDTDIFELIEEE 75 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEeccccccccCCcE-------ecCCCCcccceEeCChHHHHHHHHhh
Confidence 78999999999999999998887654 6788877421 111111000 011111000 11222222222 2
Q ss_pred hcCCcEEEEcCCCCHHh--H-HHHHHHHhCCcEEEEeecCCChhhhhcC--CccccccccccEEEe
Q 026207 102 NHMPEVIIVDEIGTEAE--A-HACRSIAERGVMLIGTAHGEWLENIIKN--PILSDLIGGVDTVTL 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d--~-~~~~~~~~~g~~vi~t~H~~~~~~~~~~--p~l~~l~~~~d~V~~ 162 (241)
..++++|++||++.... . +.+..+++.|++++.+.+..+..+..-. +.+..+ +|.|+.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~---aD~V~~ 138 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLAL---ADKVTE 138 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHh---cCeEEE
Confidence 34789999999986522 2 2334557889999999888764432211 144444 777764
No 436
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=98.93 E-value=4.9e-10 Score=100.50 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=88.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+|+.||||+||||++.+++..+... |+-|-+++.+.++..... + .|+.-+ .-.....-..++..+||.
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~-GkiVKTmEsPRDl~v~~e-----I---TQYs~l--~g~me~t~DiLLLvRPDY 333 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQ-GKIVKTMESPRDLQVSPE-----I---TQYSPL--EGDMEKTADILLLVRPDY 333 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHHhc-CcEEeeccCcccccCChh-----h---hhcccc--cCchhhhccEEEEecCCc
Confidence 49999999999999999999999866 676667776655532211 1 111111 223333344556789999
Q ss_pred EEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcCC----ccccccccccEEEe
Q 026207 108 IIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKNP----ILSDLIGGVDTVTL 162 (241)
Q Consensus 108 lilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~p----~l~~l~~~~d~V~~ 162 (241)
-|.||.+.-.|.+........|+.++++.|+++.-+++++- ++--+-+-+|+|++
T Consensus 334 TIyDEmR~t~DF~vyaDmRLAGVGMVGVVHATrpIDAiQR~igRVELG~IPqIvDTVIf 392 (604)
T COG1855 334 TIYDEMRKTEDFQVYADLRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIF 392 (604)
T ss_pred eehhhhhcccceEEeeeeecccCceEeEEecCChhHHHHHhhcceeecccccceeEEEE
Confidence 99999999988877777777799999999999988887763 22222222899999
No 437
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.92 E-value=2.1e-09 Score=88.95 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=89.8
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCC------CccccccchhhcCCCCCcc---cHHH
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD------IPHSAIGTARRMQVPEPSL---QHKV 95 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~ 95 (241)
...++.|+||||||||+++.+++...... +.+++|++. ++...... .+.....+.......+... ....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~-e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDT-EGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEC-CCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 34489999999999999999988776544 689999994 33211000 0000000000001111010 0112
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHhHH----------H-------H-HHHHhCCcEEEEeecCCChhhh-hcCC----cccc
Q 026207 96 MIEAVENHMPEVIIVDEIGTEAEAH----------A-------C-RSIAERGVMLIGTAHGEWLENI-IKNP----ILSD 152 (241)
Q Consensus 96 ~~~~~l~~~p~vlilDE~~~~~d~~----------~-------~-~~~~~~g~~vi~t~H~~~~~~~-~~~p----~l~~ 152 (241)
....+..++|+++++|++.+..... . + ..+++.|+++++|.|..+..+. ...| .+.+
T Consensus 89 l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~~~~~~~~gg~~~~~ 168 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVNNGTLRPLGGHLLEH 168 (209)
T ss_pred HHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecCCCCCcCCCcchhhe
Confidence 2223334589999999997653210 1 1 1346789999999886532211 1122 3466
Q ss_pred ccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 153 LIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 153 l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
+ +|.++. ..... . +...-.|++..+......|+++++|+
T Consensus 169 ~---~d~vi~l~~~~~-~-r~~~i~k~~~~~~~~~~~f~It~~Gi 208 (209)
T TIGR02237 169 W---SKVILRLEKFRG-R-RLATLEKHRSRPEGESVYFRITDDGI 208 (209)
T ss_pred e---eeEEEEEEecCC-E-EEEEEEECCCCCCCCeEEEEEeCCcc
Confidence 6 888777 22221 1 22233344455555667899988875
No 438
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.92 E-value=3.3e-09 Score=88.82 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=91.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCcccccc----c-hhhcCCCCC-cc-cHHHHHH-
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIG----T-ARRMQVPEP-SL-QHKVMIE- 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~----~-~~~~~~~~~-~~-~~~~~~~- 98 (241)
.+++|+||||+||||++.+++...... +.+++|++.. ...... ..+... . ..++.+... .. .+...+.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e-~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTE-GLSPER--FKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECC-CCCHHH--HHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 389999999999999999999877544 6899999843 221000 000000 0 000111110 10 1111222
Q ss_pred --HHHhcCCcEEEEcCCCCHHhH------------HH--------HHHHHhCCcEEEEeecCCChhhh-----hcCCccc
Q 026207 99 --AVENHMPEVIIVDEIGTEAEA------------HA--------CRSIAERGVMLIGTAHGEWLENI-----IKNPILS 151 (241)
Q Consensus 99 --~~l~~~p~vlilDE~~~~~d~------------~~--------~~~~~~~g~~vi~t~H~~~~~~~-----~~~p~l~ 151 (241)
.....+++++++|.+.+.... .. ...+++.|+++++|.|.....+. ..+..++
T Consensus 100 ~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~~~ 179 (225)
T PRK09361 100 AEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHTLE 179 (225)
T ss_pred HHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcchhh
Confidence 122268999999998654321 01 11346789999999887642221 1111456
Q ss_pred cccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 152 DLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 152 ~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
++ +|.++. ....... |...-.|++..++.....|+++.+|+
T Consensus 180 ~~---~d~ii~l~~~~~~~-r~~~i~k~~~~~~~~~~~f~It~~Gi 221 (225)
T PRK09361 180 HW---SKTILRLEKFRNGK-RRATLEKHRSRPEGESAEFRITDRGI 221 (225)
T ss_pred hh---ccEEEEEEEccCCe-EEEEEEECCCCCCCCeEEEEEeCCcE
Confidence 66 888886 2211111 33334566666666778899999987
No 439
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.91 E-value=4.5e-09 Score=106.27 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=88.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccccc---cch--------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHSAI---GTA-------------- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~~~---~~~-------------- 81 (241)
-|.|+|.+|||||||+.++-+...+..|. +.|| +.++.. . ..+|+... |..
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~--I~ID-gvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~ 1244 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGE--ILID-GVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDE 1244 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCe--EEEc-CeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHH
Confidence 49999999999999999999999877555 5555 322210 0 12222100 000
Q ss_pred --------------------hhcCC------CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH---H---HHHhCC
Q 026207 82 --------------------RRMQV------PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC---R---SIAERG 129 (241)
Q Consensus 82 --------------------~~~~~------~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~---~---~~~~~g 129 (241)
....+ .|-|++|-..+++|+..+.+++++||.++..|.+.= . +.+-.+
T Consensus 1245 IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~d 1324 (1381)
T KOG0054|consen 1245 IWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKD 1324 (1381)
T ss_pred HHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcC
Confidence 00011 122457888899999999999999999999888421 1 223458
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
+||++..|..+ .+.+ +|+|+. .+|...--+.+..+.++
T Consensus 1325 cTVltIAHRl~--------TVmd----~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1325 CTVLTIAHRLN--------TVMD----SDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred CeEEEEeeccc--------hhhh----cCeEEEeeCCeEeecCChHHHHhC
Confidence 99999999886 5555 599998 44443222555555543
No 440
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=98.90 E-value=2.5e-09 Score=94.20 Aligned_cols=164 Identities=13% Similarity=0.102 Sum_probs=93.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHH--hccccCC---CeEEEEcCCccc-CCCC---------CCccccccchhhcCCCCCcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR--VLSDEFQ---KRVVIVDTSNEI-GGDG---------DIPHSAIGTARRMQVPEPSL 91 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~--~l~~~~g---~~v~~i~~~~e~-~~~~---------~~~~~~~~~~~~~~~~~~~~ 91 (241)
.++.|.||||+|||||+.+++. .+++..| .+++|++ .++. .... ..+.............+..
T Consensus 97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyId-tE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~~~- 174 (316)
T TIGR02239 97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYID-TEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYNTD- 174 (316)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEE-CCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCChH-
Confidence 3899999999999999999986 3333222 4789998 4432 1100 0000000000000001111
Q ss_pred cHHHHHH----HHHhcCCcEEEEcCCCCHHhHH-------------------HH-HHHHhCCcEEEEeecCCChhh----
Q 026207 92 QHKVMIE----AVENHMPEVIIVDEIGTEAEAH-------------------AC-RSIAERGVMLIGTAHGEWLEN---- 143 (241)
Q Consensus 92 ~~~~~~~----~~l~~~p~vlilDE~~~~~d~~-------------------~~-~~~~~~g~~vi~t~H~~~~~~---- 143 (241)
.+...+. .+...+++++|+|++.+..... .+ ..+...++++++|-|..+-.+
T Consensus 175 ~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNqv~~~~~~~~~ 254 (316)
T TIGR02239 175 HQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGS 254 (316)
T ss_pred HHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceEEecCCccc
Confidence 1111222 2224578999999998663220 01 134567999999999874221
Q ss_pred hhc----CC----ccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 144 IIK----NP----ILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 144 ~~~----~p----~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
.++ .| .++|. ++..++ ....... |.++..|+++.|..+ ..|+|.++|+.
T Consensus 255 ~~~g~~~~p~gG~~~~h~---~~~ri~l~k~~~~~-R~~~v~ksp~~p~~~-~~f~i~~~Gi~ 312 (316)
T TIGR02239 255 MFAGDPKKPIGGNIMAHA---STTRLSLRKGRGEQ-RICKIYDSPCLPESE-AMFAIYEDGIG 312 (316)
T ss_pred cccCCCCcCCchHHHHhh---ccEEEEEEecCCCe-EEEEEEECCCCCCeE-EEEEEeCCcee
Confidence 121 12 45666 777776 2211122 788889999988866 89999999983
No 441
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.89 E-value=7.6e-09 Score=96.88 Aligned_cols=186 Identities=15% Similarity=0.046 Sum_probs=103.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCcccc--ccchhhcCCC--------CC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSA--IGTARRMQVP--------EP 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~--~~~~~~~~~~--------~~ 89 (241)
+++|.|+||+|||||..+++.......|.+++|++ .+|.... +...... .+........ ..
T Consensus 33 ~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~~~~~ 111 (509)
T PRK09302 33 PTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT-FEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEEAG 111 (509)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE-ccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccccccc
Confidence 79999999999999999887654433357888887 4332210 0000000 0000000000 00
Q ss_pred cccHH----HHHHHHHhcCCcEEEEcCCCCHH---hH-H--------HHHHHHhCCcEEEEeecCCChhhhhcCC-cccc
Q 026207 90 SLQHK----VMIEAVENHMPEVIIVDEIGTEA---EA-H--------ACRSIAERGVMLIGTAHGEWLENIIKNP-ILSD 152 (241)
Q Consensus 90 ~~~~~----~~~~~~l~~~p~vlilDE~~~~~---d~-~--------~~~~~~~~g~~vi~t~H~~~~~~~~~~p-~l~~ 152 (241)
..... .+...+...+|+.++||.+++.. +. . ....+++.|++++++.|.....+.+..+ ..+.
T Consensus 112 ~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~~~~~~~~~~~~ 191 (509)
T PRK09302 112 EYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGERGDEYGPLTRYGVEEF 191 (509)
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECCccCcCCccccCceEE
Confidence 11122 23344556799999999987642 11 1 1123567799999999976422323333 2356
Q ss_pred ccccccEEEe--C-ChHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEEeec---------------c-hHHHHHHhcC
Q 026207 153 LIGGVDTVTL--G-DEEARARRCQKSILERKAPPT-FYFLIEMRERHYWVTHK---------------T-EKSVDMLLRG 212 (241)
Q Consensus 153 l~~~~d~V~~--~-~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~~~~---------------~-~~~~~~~l~G 212 (241)
+ ||.|+. . .......|.++..|.|-.+.. -...|++++.|+.+... . -..+|.++.|
T Consensus 192 l---aDgVI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~v~p~~~~~~~~~~~~~~~~tGi~~lD~~l~G 268 (509)
T PRK09302 192 V---SDCVIILRNRLEGEKRTRTLRILKYRGTTHGKNEYPFTITEDGISVLPLTAMRLTQRSSNERISSGVPDLDEMLGG 268 (509)
T ss_pred E---eeEEEEEeEEccCCeEEEEEEEEECCCCCcCCccEEEEECCCcEEEEeccccccccccccccccCCcHHHHHhhcC
Confidence 7 899886 1 111212367777887733322 24668888888732211 0 2457888888
Q ss_pred CCccc
Q 026207 213 KTPLV 217 (241)
Q Consensus 213 ~~~~~ 217 (241)
+-|.-
T Consensus 269 G~~~g 273 (509)
T PRK09302 269 GFFRG 273 (509)
T ss_pred CCCCC
Confidence 87753
No 442
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.89 E-value=6.4e-09 Score=103.66 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=35.9
Q ss_pred HhcCC-cEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhh
Q 026207 101 ENHMP-EVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 101 l~~~p-~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+..+| .+|++|||++++|++++ +..+++|.+|+.|+|..+ .+.+
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS-~~if 995 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPS-IDIF 995 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCc-HHHH
Confidence 34589 89999999999999654 356779999999999998 4444
No 443
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.89 E-value=1.7e-08 Score=84.39 Aligned_cols=105 Identities=15% Similarity=0.142 Sum_probs=56.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCC---CCCcccHH----HHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV---PEPSLQHK----VMIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~ 98 (241)
.+++|+||||+||||+++.++...-.. .| .++. ..+... .... +.. .++.. .+.+.... ..++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g---~~vp-~~~~~i-~~~~-~i~---~~~~~~~~ls~g~s~f~~e~~~l~ 101 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIG---SFVP-ASKAEI-GVVD-RIF---TRIGASDDLAGGRSTFMVEMVETA 101 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccC---Ceec-ccccee-ccee-eEe---ccCCchhhhccCcchHHHHHHHHH
Confidence 589999999999999999997533111 11 1111 111000 0000 000 01111 11222221 1233
Q ss_pred HHH--hcCCcEEEEcCC---CCHHhHHHH-----HHHHhC-CcEEEEeecCCC
Q 026207 99 AVE--NHMPEVIIVDEI---GTEAEAHAC-----RSIAER-GVMLIGTAHGEW 140 (241)
Q Consensus 99 ~~l--~~~p~vlilDE~---~~~~d~~~~-----~~~~~~-g~~vi~t~H~~~ 140 (241)
.++ ..+|+++++||| ++.+|.... ....+. +.+++.++|...
T Consensus 102 ~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~ 154 (216)
T cd03284 102 NILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHE 154 (216)
T ss_pred HHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHH
Confidence 333 368999999999 777776432 123344 788999999865
No 444
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.88 E-value=1.3e-08 Score=85.34 Aligned_cols=165 Identities=14% Similarity=0.080 Sum_probs=87.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccccccchhhcCCC-----------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSAIGTARRMQVP----------- 87 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~~~~~~~~~~~----------- 87 (241)
.+++|.||||+||||++.+++...... +.+++|++ .++.... +...+..... .++.+.
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is-~e~~~~~i~~~~~~~g~~~~~~~~~-~~l~i~d~~~~~~~~~~ 97 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVT-TEESRESIIRQAAQFGMDFEKAIEE-GKLVIIDALMKEKEDEW 97 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEE-ccCCHHHHHHHHHHhCCCHHHHhhc-CCEEEEEcccccccccc
Confidence 389999999999999999877543332 57888887 3332110 0000000000 000000
Q ss_pred C-CcccHHHHHHHH---Hh---cCCcEEEEcCCCCHH--hH---H----HH-HHHHhCCcEEEEeecCCChhhhhcCCcc
Q 026207 88 E-PSLQHKVMIEAV---EN---HMPEVIIVDEIGTEA--EA---H----AC-RSIAERGVMLIGTAHGEWLENIIKNPIL 150 (241)
Q Consensus 88 ~-~~~~~~~~~~~~---l~---~~p~vlilDE~~~~~--d~---~----~~-~~~~~~g~~vi~t~H~~~~~~~~~~p~l 150 (241)
. ...........+ .. .+|+++++|.++... ++ . .+ ..+++.|++++.+.|..........+.+
T Consensus 98 ~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~ 177 (229)
T TIGR03881 98 SLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGI 177 (229)
T ss_pred ccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccce
Confidence 0 122333332222 21 368899999987652 11 1 11 1346779999999996542211111357
Q ss_pred ccccccccEEEe---CChHHHHHHHHHhhhccCCC-CCceEEEEEEc-CceE
Q 026207 151 SDLIGGVDTVTL---GDEEARARRCQKSILERKAP-PTFYFLIEMRE-RHYW 197 (241)
Q Consensus 151 ~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~-~~~~~~fe~~~-~g~~ 197 (241)
+++ ||.|+. -......+|.++..|.|..+ ..-...|++++ +|+.
T Consensus 178 ~~l---~D~vI~L~~~~~~~~~~R~i~i~K~R~~~~~~~~~~~~I~~~~Gi~ 226 (229)
T TIGR03881 178 EHV---ADGIIRFRKVVVDGELRRYLIVEKMRQTNHDKRAWEIDIVPGKGLV 226 (229)
T ss_pred EEE---EeEEEEEEEeccCCcEEEEEEEEeccCCCCCCceeEEEEcCCCceE
Confidence 788 999996 11112223566666766332 22345577763 6763
No 445
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=98.87 E-value=7.3e-09 Score=91.02 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=92.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc--c---CCCeEEEEcCCcccCCCCCC-ccccccc-----hhhcCC---CCCccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD--E---FQKRVVIVDTSNEIGGDGDI-PHSAIGT-----ARRMQV---PEPSLQ 92 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~--~---~g~~v~~i~~~~e~~~~~~~-~~~~~~~-----~~~~~~---~~~~~~ 92 (241)
.++.|+|||||||||++.+++..... . .+.+++|++....+...... .....+. ..++.+ .+....
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~~~~~ 175 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYNSNHQ 175 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCCHHHH
Confidence 37899999999999999999876431 1 12489999943322111000 0000000 001111 111110
Q ss_pred ---HHHHHHHHHhc--CCcEEEEcCCCCHHhHH--------------------HHHHHHhCCcEEEEeecCCChhh----
Q 026207 93 ---HKVMIEAVENH--MPEVIIVDEIGTEAEAH--------------------ACRSIAERGVMLIGTAHGEWLEN---- 143 (241)
Q Consensus 93 ---~~~~~~~~l~~--~p~vlilDE~~~~~d~~--------------------~~~~~~~~g~~vi~t~H~~~~~~---- 143 (241)
...+...+... +++++|+|++.+....+ ....+.+.++++++|.|..+-.+
T Consensus 176 ~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~~~~~~~ 255 (310)
T TIGR02236 176 MLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFG 255 (310)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEeceeeecCccccC
Confidence 11122222233 37899999987653221 01134667999999999765222
Q ss_pred ---hhcCC-ccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 144 ---IIKNP-ILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 144 ---~~~~p-~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
..+.+ .+.|. ++..+. ....... |.++..|+++.++... .|+|+..|+
T Consensus 256 ~~~~~~~G~~~~h~---~~~rl~l~~~~~~~-R~~~~~k~~~~~~~~~-~f~i~~~Gi 308 (310)
T TIGR02236 256 DPTRPIGGHILGHA---ATFRVYLRKGKGDK-RIARLVDSPHLPEGEA-VFRITEKGI 308 (310)
T ss_pred ccccCCcchhhhhh---eeEEEEEEecCCCe-EEEEEEECCCCCCeeE-EEEEeCCCc
Confidence 11112 45666 777776 3222222 7788889999888765 799999886
No 446
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.6e-09 Score=93.76 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=89.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCcccccc-------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSAIG------------------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~~~~------------------- 79 (241)
.+.+.||.|+||||+++.+-+.+..+.|. +.++ +.++... +.+|+....
T Consensus 291 tvAiVg~SG~gKsTI~rllfRFyD~~sG~--I~id-~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~e 367 (497)
T COG5265 291 TVAIVGESGAGKSTILRLLFRFYDVNSGS--ITID-GQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAE 367 (497)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCcCce--EEEc-chhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHH
Confidence 59999999999999999999999877554 6665 3332210 222221100
Q ss_pred ---------------------ch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 80 ---------------------TA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 80 ---------------------~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
+. .+--..+++.+|++++++.+..+|.++++||.++.+|-..-. .....
T Consensus 368 ev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~ 447 (497)
T COG5265 368 EVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA 447 (497)
T ss_pred HHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC
Confidence 00 011124567799999999999999999999999999884222 22346
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
|+|-+...|..+ .+.+ +|.|+. .++....++.-.++..+
T Consensus 448 ~rttlviahrls--------ti~~----adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 448 GRTTLVIAHRLS--------TIID----ADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CCeEEEEeehhh--------hccC----CceEEEeeCCEEEecCcHHHHHHc
Confidence 888777779886 3333 588777 44443333444555443
No 447
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.87 E-value=5.4e-09 Score=87.66 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=60.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc-cCCC----eEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD-EFQK----RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~-~~g~----~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (241)
.+++|+||||+||||++++++-..-- ..|. +-..+..-.++.. ...... ......|..+.....++.++
T Consensus 31 ~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~-----~~~l~d-~~~~~lS~~~~e~~~~a~il 104 (222)
T cd03285 31 RFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILA-----RVGASD-SQLKGVSTFMAEMLETAAIL 104 (222)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEe-----eecccc-chhcCcChHHHHHHHHHHHH
Confidence 38999999999999999997743210 0110 0011110001100 000000 01122344455555565555
Q ss_pred --hcCCcEEEEcCC---CCHHhHHHHH-----HHH-hCCcEEEEeecCC
Q 026207 102 --NHMPEVIIVDEI---GTEAEAHACR-----SIA-ERGVMLIGTAHGE 139 (241)
Q Consensus 102 --~~~p~vlilDE~---~~~~d~~~~~-----~~~-~~g~~vi~t~H~~ 139 (241)
..+|+++++||| ++.+|..... ... +.|.+++.++|..
T Consensus 105 ~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~ 153 (222)
T cd03285 105 KSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFH 153 (222)
T ss_pred HhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechH
Confidence 578999999999 7778885433 222 3478899999953
No 448
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.86 E-value=2.6e-09 Score=89.54 Aligned_cols=169 Identities=19% Similarity=0.135 Sum_probs=91.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccchhhcCCCCC-----c
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTARRMQVPEP-----S 90 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~~~~~~~~~-----~ 90 (241)
..+++|.||||+|||+|..+++..-....|.+++|+. .++.... +..... ..+....+...+. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 3489999999999999999877544322257899997 3332110 000000 0000000111111 1
Q ss_pred c----cHHHHHHHHHhcCCcEEEEcCCCCH---HhH--------HHHHHHHhCCcEEEEeecCCChhhhhcCCcccc-cc
Q 026207 91 L----QHKVMIEAVENHMPEVIIVDEIGTE---AEA--------HACRSIAERGVMLIGTAHGEWLENIIKNPILSD-LI 154 (241)
Q Consensus 91 ~----~~~~~~~~~l~~~p~vlilDE~~~~---~d~--------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~-l~ 154 (241)
. -...+...+...+|+++++|.+... .++ .....+++.|++++.|.|.....+......+++ +
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~~~~~~~~~~~~i~~~l- 176 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEMPSGSEDDGTFGIEHYL- 176 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEESSSSSSSSSTSHHHHH-
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEccccCcccccccchhhhc-
Confidence 1 1233334455678999999997655 111 112245678999888888543122222235666 7
Q ss_pred ccccEEEe---CChHHHHHHHHHhhhccCCC-CCceEEEEEEcCceEE
Q 026207 155 GGVDTVTL---GDEEARARRCQKSILERKAP-PTFYFLIEMRERHYWV 198 (241)
Q Consensus 155 ~~~d~V~~---~~~~~~~~~~~~~~k~r~g~-~~~~~~fe~~~~g~~~ 198 (241)
||.|+. -+......|.++..|.|..+ ..-...|++++.|+-+
T Consensus 177 --~D~vI~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~I~~~Gi~i 222 (226)
T PF06745_consen 177 --ADGVIELRYEEEGGRIRRRLRIVKMRGSRHSTGIHPFEITPGGIEI 222 (226)
T ss_dssp --SSEEEEEEEEEETTEEEEEEEEEEETTS----BEEEEEEETTEEEE
T ss_pred --ccEEEEEEEEeeCCEEEEEEEEEEcCCCCCCCcEEEEEEECCeEEE
Confidence 899987 11122233777888887543 3356778888888743
No 449
>PRK13695 putative NTPase; Provisional
Probab=98.85 E-value=2.4e-08 Score=80.35 Aligned_cols=111 Identities=26% Similarity=0.239 Sum_probs=57.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEE-EEcCC-cccCCC-CCCccc-c---ccchhhcCC------------CCC
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVV-IVDTS-NEIGGD-GDIPHS-A---IGTARRMQV------------PEP 89 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~-~i~~~-~e~~~~-~~~~~~-~---~~~~~~~~~------------~~~ 89 (241)
++|+|+||+|||||++.+++.+.+. |.++. ++.+. .+.... ...... . .....+... .+.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg 81 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED 81 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence 7899999999999999998877542 44533 33211 000000 000000 0 000001110 000
Q ss_pred cccHHHHHHHHHhcCCcEEEEcCCCCH--HhH---HHHHHHHhCCcEEEEeecCCC
Q 026207 90 SLQHKVMIEAVENHMPEVIIVDEIGTE--AEA---HACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 90 ~~~~~~~~~~~l~~~p~vlilDE~~~~--~d~---~~~~~~~~~g~~vi~t~H~~~ 140 (241)
.......+......+|+++++||++.. .+. ..+..+.+.|.++++++|...
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 011111112222348999999997643 232 344456678999999999754
No 450
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.85 E-value=3.8e-09 Score=102.96 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=61.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh-ccccCCCeEEEEcCC--cccCCCCCCccccccc----hhhcCCCCCcccHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV-LSDEFQKRVVIVDTS--NEIGGDGDIPHSAIGT----ARRMQVPEPSLQHKVMIEA 99 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~-l~~~~g~~v~~i~~~--~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 99 (241)
..++|+||||+||||+++.+++. +.+..|. ++... ..+..-... ...++. ...+..++.++.....+..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---~Vpa~~~~~~~~~d~i-~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGI---PIPANEHSEIPYFEEI-FADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCC---CccCCccccccchhhe-eeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 48999999999999999999987 3333231 22111 111000000 000000 0112223333443322222
Q ss_pred HHhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEeecCCCh
Q 026207 100 VENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGTAHGEWL 141 (241)
Q Consensus 100 ~l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t~H~~~~ 141 (241)
. ..+|.++++|||+++.|+... ....+.|+++|+|+|...+
T Consensus 399 ~-~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 399 K-TTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred h-cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 1 148999999999999887322 1334568899999998764
No 451
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.84 E-value=9.2e-09 Score=85.66 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=89.8
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-----hhhcCCCCC-c-ccHHH---
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-----ARRMQVPEP-S-LQHKV--- 95 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~-~-~~~~~--- 95 (241)
..+++|+|+||+||||++.+++...... +.+++|++...... .. ..+.... ...+.+... . ..+..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~e~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDTEGLSS-ER--FRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCCCCH-HH--HHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 3389999999999999999999887544 68999997322211 00 0000000 001111111 1 11111
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHhH------------HHH--------HHHHhCCcEEEEeecCCChhh-hhcCC----cc
Q 026207 96 MIEAVENHMPEVIIVDEIGTEAEA------------HAC--------RSIAERGVMLIGTAHGEWLEN-IIKNP----IL 150 (241)
Q Consensus 96 ~~~~~l~~~p~vlilDE~~~~~d~------------~~~--------~~~~~~g~~vi~t~H~~~~~~-~~~~p----~l 150 (241)
.+......+++++++|.+.+.... ..+ ..+++.++++++|.|.....+ ....| .+
T Consensus 95 ~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~ 174 (218)
T cd01394 95 ETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGGHTL 174 (218)
T ss_pred HHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCCcch
Confidence 122233446999999998865211 011 134678999999999763222 11123 45
Q ss_pred ccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 151 SDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 151 ~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
+++ +|.++. .......++.. --|++..+......|+++++|+
T Consensus 175 ~~~---~d~~i~l~~~~~~~r~~~-~~~~~~~~~~~~~~f~It~~Gi 217 (218)
T cd01394 175 EHW---SKVILRLEKLRVGTRRAV-LEKHRFRPEGSSVYFRITDKGI 217 (218)
T ss_pred hcc---eeEEEEEEEcCCCeEEEE-EeeCCCCCCCceEEEEEeCCcc
Confidence 677 898887 22111111211 1244455556667899998885
No 452
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=1.5e-08 Score=83.87 Aligned_cols=114 Identities=12% Similarity=0.120 Sum_probs=60.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcC-CcccCCCCCCccccccc----hhhcCCCCCcccHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDT-SNEIGGDGDIPHSAIGT----ARRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~-~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 100 (241)
.+++|+||||+||||+++++++..--. .|. ++.. ..++.....+ ...++. ......++.++++. .....
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~---~vpa~~~~l~~~d~I-~~~~~~~d~~~~~~S~fs~e~~~~-~~il~ 104 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGC---FVPAEYATLPIFNRL-LSRLSNDDSMERNLSTFASEMSET-AYILD 104 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCC---CcchhhcCccChhhe-eEecCCccccchhhhHHHHHHHHH-HHHHH
Confidence 589999999999999999998654221 111 1110 0011000000 000000 00111122233322 22233
Q ss_pred HhcCCcEEEEcCCCCHHhHHH--------HHHHHhCCcEEEEeecCCChhhhh
Q 026207 101 ENHMPEVIIVDEIGTEAEAHA--------CRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~--------~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
...+|+++++|||+.+.++.. +....+.|.+++.++|.....+..
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 457899999999987765521 223445688999999988744433
No 453
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=98.81 E-value=1.7e-08 Score=89.62 Aligned_cols=164 Identities=13% Similarity=0.052 Sum_probs=92.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHh--cccc---CCCeEEEEcCCcccCCCC---------CCccccccchhhcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIARV--LSDE---FQKRVVIVDTSNEIGGDG---------DIPHSAIGTARRMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~--l~~~---~g~~v~~i~~~~e~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 93 (241)
++.|+|+||+|||+|+..++-. ++.. .+.+++|++....+.... ..+...+.........+. ..+
T Consensus 125 i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~-e~~ 203 (342)
T PLN03186 125 ITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNT-DHQ 203 (342)
T ss_pred EEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCH-HHH
Confidence 7999999999999999988843 2221 124899999444322110 000000000000000111 111
Q ss_pred HHHHH----HHHhcCCcEEEEcCCCCHHhHH------------HH--------HHHHhCCcEEEEeecCCChhh---hhc
Q 026207 94 KVMIE----AVENHMPEVIIVDEIGTEAEAH------------AC--------RSIAERGVMLIGTAHGEWLEN---IIK 146 (241)
Q Consensus 94 ~~~~~----~~l~~~p~vlilDE~~~~~d~~------------~~--------~~~~~~g~~vi~t~H~~~~~~---~~~ 146 (241)
...+. .+...++++||+|++.+..... .+ ..+...|+++++|-|..+-.+ .++
T Consensus 204 ~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~ 283 (342)
T PLN03186 204 SELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFA 283 (342)
T ss_pred HHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCEEEccCCccccC
Confidence 11221 2234579999999998753320 00 123457999999999853222 233
Q ss_pred CCc--------cccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 147 NPI--------LSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 147 ~p~--------l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
+|. +.|. ++..++ .++.... |.++..|+++.|... ..|+|++.|+.
T Consensus 284 ~~~~~P~gG~~~~h~---~~tRl~L~k~~~~~-R~~~v~ksp~~p~~e-~~F~I~~~Gi~ 338 (342)
T PLN03186 284 GPQLKPIGGNIMAHA---STTRLALRKGRGEN-RICKVISSPCLPEAE-ARFSISSEGVT 338 (342)
T ss_pred CCccccchhHHHHhh---ccEEEEEEecCCCe-EEEEEEECCCCCCeE-EEEEEECCcee
Confidence 332 3444 777776 3222222 778888999888866 89999999973
No 454
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=98.77 E-value=2.5e-08 Score=88.65 Aligned_cols=167 Identities=13% Similarity=0.067 Sum_probs=88.8
Q ss_pred EEEEEeCCCchHHHHHHHHHH--hcccc---CCCeEEEEcCCcccCCC---------CCCccccccchhhcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR--VLSDE---FQKRVVIVDTSNEIGGD---------GDIPHSAIGTARRMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~--~l~~~---~g~~v~~i~~~~e~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 93 (241)
++.|+||||||||+|+.+++- .++.. .+.+++|++....+... +..+...+.+.......+.....
T Consensus 128 ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~~ 207 (344)
T PLN03187 128 ITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQY 207 (344)
T ss_pred EEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHHH
Confidence 799999999999999998874 33221 23689999944322211 00000000000001111111111
Q ss_pred HH---HHHHHHhcCCcEEEEcCCCCHHhH-------------------H-HHHHHHhCCcEEEEeecCCChhhh---hc-
Q 026207 94 KV---MIEAVENHMPEVIIVDEIGTEAEA-------------------H-ACRSIAERGVMLIGTAHGEWLENI---IK- 146 (241)
Q Consensus 94 ~~---~~~~~l~~~p~vlilDE~~~~~d~-------------------~-~~~~~~~~g~~vi~t~H~~~~~~~---~~- 146 (241)
.. +...+...++++||+|++.+.... . ....+...|+++++|-|..+-.+. ..
T Consensus 208 ~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~ 287 (344)
T PLN03187 208 NLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISD 287 (344)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCC
Confidence 11 111233467999999998765321 0 111346689999999987642221 01
Q ss_pred --CCccccccc-cccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 147 --NPILSDLIG-GVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 147 --~p~l~~l~~-~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
.|...+.++ .+...++ .+..... |.++.++++..|..+ ..|+++..|+
T Consensus 288 ~~~pagG~~~~h~~~~Rl~l~k~~~~~-R~~~v~ksp~lp~~~-~~f~It~~GI 339 (344)
T PLN03187 288 PKKPAGGHVLAHAATIRLMLRKGKGEQ-RVCKVFDAPNLPEAE-AEFQITSGGI 339 (344)
T ss_pred CCCCCCchhhheeeeEEEEEEcCCCCe-EEEEEEECCCCCCce-EEEEEeCCCc
Confidence 232223222 1555554 2222222 677888888765544 6799999887
No 455
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.75 E-value=1.4e-09 Score=87.32 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=26.1
Q ss_pred cCCcEEEEcCCCCHHhH-----HHHHHHHhCCcEEEEeecCCC
Q 026207 103 HMPEVIIVDEIGTEAEA-----HACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~-----~~~~~~~~~g~~vi~t~H~~~ 140 (241)
.+++++++||++.++.. +++..+.+.+..+|+|+|...
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~ 136 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRS 136 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS-
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 68999999999987543 566677788899999999983
No 456
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.73 E-value=5.3e-08 Score=83.67 Aligned_cols=38 Identities=32% Similarity=0.313 Sum_probs=31.4
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
...+++|.|+||+||||++.+++.......|.+|+|++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 33489999999999999999998877544467888887
No 457
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=98.72 E-value=5.5e-08 Score=85.80 Aligned_cols=164 Identities=15% Similarity=0.149 Sum_probs=89.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEcCCcccCCC---------CCCccccccchhhcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGGD---------GDIPHSAIGTARRMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~~~~e~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 93 (241)
++.|+||||||||+++.+++...... .+.+++|++....+... +..+...+.........+.. .+
T Consensus 104 vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~~~~-~~ 182 (317)
T PRK04301 104 ITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYNSD-HQ 182 (317)
T ss_pred EEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCCCHH-HH
Confidence 79999999999999999998754311 13489999943322110 00000000000001111111 11
Q ss_pred HH---HHHHHH-h-cCCcEEEEcCCCCHHhH-----------H---------HHHHHHhCCcEEEEeecCCChhhh-hc-
Q 026207 94 KV---MIEAVE-N-HMPEVIIVDEIGTEAEA-----------H---------ACRSIAERGVMLIGTAHGEWLENI-IK- 146 (241)
Q Consensus 94 ~~---~~~~~l-~-~~p~vlilDE~~~~~d~-----------~---------~~~~~~~~g~~vi~t~H~~~~~~~-~~- 146 (241)
.. .+.... . .+++++|+|++.+.... . ....+.+.|+++++|.|..+-.+. ..
T Consensus 183 ~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnqv~~~~~~~~~~ 262 (317)
T PRK04301 183 MLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGD 262 (317)
T ss_pred HHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeceEEeccccccCc
Confidence 11 112222 2 57889999998875322 0 111346789999999986542211 11
Q ss_pred --CC----ccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 147 --NP----ILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 147 --~p----~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
.| .+.|. +++.+. ....... |.++.+|++++++.. ..|+|++.|++
T Consensus 263 ~~~~~~G~~~~~~---~~~rl~l~k~~~~~-R~~~v~k~~~~~~~~-~~f~I~~~Gi~ 315 (317)
T PRK04301 263 PTQPIGGHILGHT---ATFRIYLRKSKGNK-RIARLVDSPHLPEGE-AVFRITEEGIR 315 (317)
T ss_pred cccCCcchHhHhh---eeEEEEEEecCCCc-eEEEEEeCCCCCCce-EEEEEeCCccc
Confidence 12 23444 665555 2211112 678888999888764 48999998873
No 458
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=98.72 E-value=6.1e-08 Score=85.31 Aligned_cols=158 Identities=17% Similarity=0.135 Sum_probs=87.9
Q ss_pred EEEEEeCCCchHHHHHHHHHH--hcccc---CCCeEEEEcCCcccCCCCCCccccccchhhcCC--------------CC
Q 026207 28 FFLSYFRPGVGKTTVMREIAR--VLSDE---FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV--------------PE 88 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~--~l~~~---~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~--------------~~ 88 (241)
++.|+||||||||+|+.+++- .++.. .+.+++|++....+.. ......+.+... .+
T Consensus 98 iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~-----eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 98 ITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRP-----DRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred EEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCH-----HHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 899999999999999988774 33321 2468999994432211 111001111111 11
Q ss_pred CcccHHHHHH----HHHhcCCcEEEEcCCCCHHhH----------------H----HHHHHHhCCcEEEEeecCCChhhh
Q 026207 89 PSLQHKVMIE----AVENHMPEVIIVDEIGTEAEA----------------H----ACRSIAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 89 ~~~~~~~~~~----~~l~~~p~vlilDE~~~~~d~----------------~----~~~~~~~~g~~vi~t~H~~~~~~~ 144 (241)
.. .+...+. .+...+++++|+|++.+.... + ....+.+.++++++|-|..+-.+.
T Consensus 173 ~e-~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~ 251 (313)
T TIGR02238 173 SE-HQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGA 251 (313)
T ss_pred HH-HHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCc
Confidence 11 1111121 223457999999998755321 0 111456679999999998863332
Q ss_pred ----hcCC-------ccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 145 ----IKNP-------ILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 145 ----~~~p-------~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
.++| .+.|. ++..++ .+..... |..+-++...-|. -+..|+++..|+
T Consensus 252 ~~~~~~~~~~p~gG~~~~h~---~~~Rl~l~k~~~~~-R~~~~~~sp~~p~-~~~~f~i~~~Gi 310 (313)
T TIGR02238 252 TMTFIADPKKPIGGHVLAHA---STTRILLRKGRGEE-RVAKLYDSPDMPE-AEASFQITEGGI 310 (313)
T ss_pred ccccCCCCccCcchhhhhhh---eeEEEEEEecCCCe-EEEEEeeCCCCCC-eEEEEEEeCCcc
Confidence 1233 34555 777666 3221111 4455555554443 457788888886
No 459
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.72 E-value=3.8e-08 Score=82.71 Aligned_cols=174 Identities=16% Similarity=0.096 Sum_probs=89.6
Q ss_pred eeCcceeeccEEEEEeCCCchHHHHHHHHHHhccccC-----CCeEEEEcCCcccCCCC---------CCccccccchhh
Q 026207 18 LYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEF-----QKRVVIVDTSNEIGGDG---------DIPHSAIGTARR 83 (241)
Q Consensus 18 ~~~~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~-----g~~v~~i~~~~e~~~~~---------~~~~~~~~~~~~ 83 (241)
+++..-....++.|.|||||||||++.+++....... +.+++|++......... ..+.... .+
T Consensus 11 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~---~~ 87 (235)
T cd01123 11 LLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVL---DN 87 (235)
T ss_pred hccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHh---cC
Confidence 3344334445899999999999999999986542211 36889998333211000 0000000 00
Q ss_pred cCCC--CCcccH----HHHHHHHHhc-CCcEEEEcCCCCHHhH-------------------HHH-HHHHhCCcEEEEee
Q 026207 84 MQVP--EPSLQH----KVMIEAVENH-MPEVIIVDEIGTEAEA-------------------HAC-RSIAERGVMLIGTA 136 (241)
Q Consensus 84 ~~~~--~~~~~~----~~~~~~~l~~-~p~vlilDE~~~~~d~-------------------~~~-~~~~~~g~~vi~t~ 136 (241)
+.+. ...... ..+...+... ++++++||.+.+.... ..+ ..+.+.+++++.|.
T Consensus 88 i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 88 IYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 1100 000111 1122233445 8999999999764211 001 13457899999998
Q ss_pred cCCChhhh-------hcCCccccccc-cccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 137 HGEWLENI-------IKNPILSDLIG-GVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 137 H~~~~~~~-------~~~p~l~~l~~-~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
|.....+. ...|.+-..+. .++..++ ...... .|.++.+|+...+ .....|++++.|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~~-~r~~~i~k~~~~~-~~~~~f~It~~Gi 234 (235)
T cd01123 168 QVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGRGE-ERIAKIVDSPHLP-EGEAVFAITEEGI 234 (235)
T ss_pred cEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECCCC-ceEEEEeeCCCCC-CceEEEEEeCCcc
Confidence 87642221 11122212111 1443333 211111 2667778877666 4567899988875
No 460
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.71 E-value=5.1e-08 Score=91.31 Aligned_cols=183 Identities=14% Similarity=0.126 Sum_probs=101.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCc--cccccchhhcCCCCCcc----cH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIP--HSAIGTARRMQVPEPSL----QH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~--~~~~~~~~~~~~~~~~~----~~ 93 (241)
+++|.|+||+|||+++.+++...... |.+++|++ .++.... +... ....+...-....+... ..
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis-~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~ 352 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRR-GERCLLFA-FEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLEDHL 352 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEE-ecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHHHHH
Confidence 79999999999999999998765444 68899987 3332110 0000 00000000001111111 22
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCHHhH---H--------HHHHHHhCCcEEEEeecCCChh--hhhcCCccccccccccEE
Q 026207 94 KVMIEAVENHMPEVIIVDEIGTEAEA---H--------ACRSIAERGVMLIGTAHGEWLE--NIIKNPILSDLIGGVDTV 160 (241)
Q Consensus 94 ~~~~~~~l~~~p~vlilDE~~~~~d~---~--------~~~~~~~~g~~vi~t~H~~~~~--~~~~~p~l~~l~~~~d~V 160 (241)
..+.+.+...+|+++++|.++..... . ....+++.|++++.|.+..... .......++++ ||.|
T Consensus 353 ~~i~~~i~~~~~~~vVIDslt~l~~~~~~~~~~~~l~~l~~~~k~~~~t~l~t~~~~~~~g~~~~~~~~~~~l---~D~v 429 (509)
T PRK09302 353 IIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLKSEEITGLFTNLTPDFMGSHSITESHISSL---TDTW 429 (509)
T ss_pred HHHHHHHHHcCCCEEEEcCHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEEeccccccCCCCCCcCceEEe---eeEE
Confidence 23333444678999999998765322 1 1224567899999887755321 11111246778 8998
Q ss_pred Ee---CChHHHHHHHHHhhhccCCC-CCceEEEEEEcCceEEeecchHHHHHHhcCCCcc
Q 026207 161 TL---GDEEARARRCQKSILERKAP-PTFYFLIEMRERHYWVTHKTEKSVDMLLRGKTPL 216 (241)
Q Consensus 161 ~~---~~~~~~~~~~~~~~k~r~g~-~~~~~~fe~~~~g~~~~~~~~~~~~~~l~G~~~~ 216 (241)
+. -+.....+|.++.+|.|-.+ +.-...|++++.|+.+... ..-..-++.|..-.
T Consensus 430 I~L~~~~~~~~~~R~l~I~K~Rg~~~~~~~~~f~It~~Gi~v~~~-~~~~~~~~~g~~~~ 488 (509)
T PRK09302 430 ILLQYVEINGEMNRALYVLKMRGSWHSNQIREFVITDKGIHIKDP-FRGFEGILSGSPRR 488 (509)
T ss_pred EEEEEeecCCeeEEEEEEEEcCCCCCCCceEEEEEeCCcEEEccc-ccCCCccccCCCcc
Confidence 87 22122233667777877433 3345678999999865422 12223344555444
No 461
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.68 E-value=5.8e-08 Score=77.68 Aligned_cols=35 Identities=11% Similarity=0.313 Sum_probs=28.2
Q ss_pred cEEEEcCCCCHHhHHH-------HHHHHhCCcEEEEeecCCC
Q 026207 106 EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~-------~~~~~~~g~~vi~t~H~~~ 140 (241)
+++++|||.+.+|... +......|.+||++.|..+
T Consensus 152 ~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLN 193 (248)
T COG4138 152 QLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN 193 (248)
T ss_pred eeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchh
Confidence 5999999999998831 2245577999999999887
No 462
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.67 E-value=4.2e-08 Score=74.43 Aligned_cols=70 Identities=24% Similarity=0.345 Sum_probs=48.9
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC-CcE
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM-PEV 107 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-p~v 107 (241)
++|.||||+||||+++.++..+. ..++.++ ..++... ...+........+..+.... |.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~~~~i~-~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FPFIEID-GSELISS--------------YAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SEEEEEE-TTHHHTS--------------STTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----ccccccc-ccccccc--------------ccccccccccccccccccccccee
Confidence 68999999999999999999974 5678887 4443211 00111234555666666666 999
Q ss_pred EEEcCCCCHH
Q 026207 108 IIVDEIGTEA 117 (241)
Q Consensus 108 lilDE~~~~~ 117 (241)
+++||+....
T Consensus 62 l~iDe~d~l~ 71 (132)
T PF00004_consen 62 LFIDEIDKLF 71 (132)
T ss_dssp EEEETGGGTS
T ss_pred eeeccchhcc
Confidence 9999986543
No 463
>PTZ00035 Rad51 protein; Provisional
Probab=98.66 E-value=1.1e-07 Score=84.51 Aligned_cols=163 Identities=13% Similarity=0.079 Sum_probs=87.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc-c----cCCCeEEEEcCCcccCCC---------CCCccccccchhhcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS-D----EFQKRVVIVDTSNEIGGD---------GDIPHSAIGTARRMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~-~----~~g~~v~~i~~~~e~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 93 (241)
++.|+||||||||||+.+++.... | ..+.+++|++....+... +..+.............+.. .+
T Consensus 120 iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~~e-~~ 198 (337)
T PTZ00035 120 ITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHE-HQ 198 (337)
T ss_pred EEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCCHH-HH
Confidence 799999999999999999986543 1 024588899843322110 00000000000000111111 11
Q ss_pred HHHH----HHHHhcCCcEEEEcCCCCHHhH-----------H-----H---HH-HHHhCCcEEEEeecCCChhhh---h-
Q 026207 94 KVMI----EAVENHMPEVIIVDEIGTEAEA-----------H-----A---CR-SIAERGVMLIGTAHGEWLENI---I- 145 (241)
Q Consensus 94 ~~~~----~~~l~~~p~vlilDE~~~~~d~-----------~-----~---~~-~~~~~g~~vi~t~H~~~~~~~---~- 145 (241)
...+ ..+...+++++|+|++.+.... . . +. .+...|+++++|-|..+-.+. +
T Consensus 199 ~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~~~~~~~~~ 278 (337)
T PTZ00035 199 MQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFV 278 (337)
T ss_pred HHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEEecCCccccC
Confidence 1121 1222467899999998764321 0 0 11 234679999999887753211 1
Q ss_pred c---CCc----cccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 146 K---NPI----LSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 146 ~---~p~----l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
. .|. +.|. ++..++ ....... |.++.+++++.|... ..|+|++.|+
T Consensus 279 ~~~~~p~gG~~~~h~---~~~Rl~l~k~~~~~-R~~~i~ksp~~p~~~-~~f~It~~Gi 332 (337)
T PTZ00035 279 ADPKKPIGGHIIAHA---STTRLSLRKGRGEQ-RICKIYDSPNLPESE-AVFAISEGGI 332 (337)
T ss_pred CCCccCCchHHHHhh---eeEEEEEEecCCCe-eEEEEEECCCCCCee-EEEEEeCCcc
Confidence 1 122 3333 555444 2211112 667777888777665 6899999987
No 464
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.64 E-value=9.7e-08 Score=82.62 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=38.6
Q ss_pred CCCcccHHHHHHHHHhc----CCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~----~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~ 140 (241)
++++++++..++.+... +|+++++|||.+.+|+.... .....+.++|+++|...
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~ 234 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ 234 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH
Confidence 34566777777764432 99999999999999995433 11234678999999764
No 465
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=1.5e-07 Score=93.28 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=49.0
Q ss_pred CCCcccHHHHHHHHHhc---CCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 87 PEPSLQHKVMIEAVENH---MPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~---~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
+|++++++..++.++.. +|+++++|||++++|+... ....+.|.++|++.|... .+ ..
T Consensus 829 LSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--------~i-~~--- 896 (924)
T TIGR00630 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--------VI-KT--- 896 (924)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HH-Hh---
Confidence 34566889999888876 5999999999999999443 244557999999999886 23 23
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
+|.++.
T Consensus 897 aD~ii~ 902 (924)
T TIGR00630 897 ADYIID 902 (924)
T ss_pred CCEEEE
Confidence 788776
No 466
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.64 E-value=2.1e-07 Score=78.05 Aligned_cols=108 Identities=17% Similarity=0.196 Sum_probs=57.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHH-hccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC---CCcc--------cHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR-VLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP---EPSL--------QHK 94 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~-~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~---~~~~--------~~~ 94 (241)
.+++|+||||+||||+++++++ .+.++.|.-+ .-....+.. ..+.. .++... ..+. +..
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v--~a~~~~~~~----~~~i~---~~~~~~d~~~~~~StF~~e~~~~~ 102 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFV--PASSATLSI----FDSVL---TRMGASDSIQHGMSTFMVELSETS 102 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE--EcCceEEec----cceEE---EEecCccccccccchHHHHHHHHH
Confidence 3899999999999999999998 4444433311 110111100 00000 011110 0111 111
Q ss_pred HHHHHHHhcCCcEEEEcCCCCHHh---HHH-----HHHHHhC-CcEEEEeecCCChhhhh
Q 026207 95 VMIEAVENHMPEVIIVDEIGTEAE---AHA-----CRSIAER-GVMLIGTAHGEWLENII 145 (241)
Q Consensus 95 ~~~~~~l~~~p~vlilDE~~~~~d---~~~-----~~~~~~~-g~~vi~t~H~~~~~~~~ 145 (241)
.++.. ..+++++++|||+.+.+ ... +....+. +.+++.++|...+....
T Consensus 103 ~il~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 103 HILSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 22222 24789999999965544 222 1233344 78899999998755443
No 467
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=1.2e-07 Score=86.51 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=72.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCC-------CeEEEEcCCc--------------ccCCCCCCccc----c---ccc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQ-------KRVVIVDTSN--------------EIGGDGDIPHS----A---IGT 80 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g-------~~v~~i~~~~--------------e~~~~~~~~~~----~---~~~ 80 (241)
+.+.|+||+||||+++.+.+.+.+..| .++.|..+.+ +-...+. +.. . +|.
T Consensus 393 i~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~-~~ee~r~hl~~~Gl 471 (582)
T KOG0062|consen 393 ISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK-TEEEIRRHLGSFGL 471 (582)
T ss_pred hheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC-CHHHHHHHHHhcCC
Confidence 889999999999999999998875511 2222221100 0000000 000 0 000
Q ss_pred -----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH-HhCCcEEEEeecCCC
Q 026207 81 -----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-AERGVMLIGTAHGEW 140 (241)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~-~~~g~~vi~t~H~~~ 140 (241)
...+..+|+|++.++.++.+.-++|.+|+||||++.+|...+. .| ++-+-.|++++|...
T Consensus 472 ~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~ 540 (582)
T KOG0062|consen 472 SGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEE 540 (582)
T ss_pred CchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHH
Confidence 0124557889999999999999999999999999999986543 33 333445777779887
No 468
>PRK05973 replicative DNA helicase; Provisional
Probab=98.62 E-value=2.1e-07 Score=78.67 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=69.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccccccchhhcCCCCCcccHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSAIGTARRMQVPEPSLQHKVMIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (241)
.+++|.|+||+||||+..+++...... |.+++|++ .++.... +......... ..+... ........+.
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfS-lEes~~~i~~R~~s~g~d~~~~~~~-~~~d~~-d~~~~~~ii~ 140 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFT-LEYTEQDVRDRLRALGADRAQFADL-FEFDTS-DAICADYIIA 140 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-EeCCHHHHHHHHHHcCCChHHhccc-eEeecC-CCCCHHHHHH
Confidence 389999999999999999998876555 78888887 4443110 0000000000 000111 1122333333
Q ss_pred HHH-hcCCcEEEEcCCCCHHh----HH---H---H-HHHHhCCcEEEEeecCCChhhhh--cCCccccc
Q 026207 99 AVE-NHMPEVIIVDEIGTEAE----AH---A---C-RSIAERGVMLIGTAHGEWLENII--KNPILSDL 153 (241)
Q Consensus 99 ~~l-~~~p~vlilDE~~~~~d----~~---~---~-~~~~~~g~~vi~t~H~~~~~~~~--~~p~l~~l 153 (241)
... ..+++++|||.++.... .+ . + ..+++.|++++.+.+.+...+.- .+|.+.++
T Consensus 141 ~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDl 209 (237)
T PRK05973 141 RLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLPDIRDV 209 (237)
T ss_pred HHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCCChhhc
Confidence 333 35789999999875521 11 1 1 24577899999998887632221 24555554
No 469
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.58 E-value=8e-08 Score=93.97 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=60.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc-cccCCCeEEEEcCC--cccCCCCCCccccccch----hhcCCCCCcccHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL-SDEFQKRVVIVDTS--NEIGGDGDIPHSAIGTA----RRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l-~~~~g~~v~~i~~~--~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 100 (241)
+++|+|||++||||+|+.++... -...|. +++-. ..+..-.. ....++.. .....++.++++...+...
T Consensus 329 ~~iITGpN~gGKTt~lktigl~~~maq~G~---~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS~~m~~~~~Il~~ 404 (782)
T PRK00409 329 VLVITGPNTGGKTVTLKTLGLAALMAKSGL---PIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFSGHMTNIVRILEK 404 (782)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHHHhCC---CcccCCCccccccce-EEEecCCccchhhchhHHHHHHHHHHHHHHh
Confidence 78999999999999999987542 112121 22211 11110000 00000100 0112223344444333332
Q ss_pred HhcCCcEEEEcCCCCHHhHHHH--------HHHHhCCcEEEEeecCCChhh
Q 026207 101 ENHMPEVIIVDEIGTEAEAHAC--------RSIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~~--------~~~~~~g~~vi~t~H~~~~~~ 143 (241)
. .+|+++++|||+++.|+... ....+.|.++|+|+|...+..
T Consensus 405 ~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~ 454 (782)
T PRK00409 405 A-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKA 454 (782)
T ss_pred C-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHH
Confidence 2 58999999999999887321 123456889999999876433
No 470
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.58 E-value=3.3e-07 Score=75.17 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=44.5
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t~H~~~ 140 (241)
...|.+++.++.+..-+.+...++++||++-.+|..+.. ++..+|++|+..+|.-+
T Consensus 146 HkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD 209 (291)
T KOG2355|consen 146 HKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD 209 (291)
T ss_pred eeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc
Confidence 334566788888888888888999999999988874432 45668999999999886
No 471
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=98.58 E-value=2.6e-07 Score=77.93 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=31.2
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+..+++|.|+||+||||++.+++-......+.+++|++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 33489999999999999999988776554467888887
No 472
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.57 E-value=3.2e-07 Score=69.84 Aligned_cols=78 Identities=24% Similarity=0.337 Sum_probs=48.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||||+||||+++.++..+... +..+++++ ..+...... ... ... ..............++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~-~~~~~~~~~-----~~~--~~~----~~~~~~~~~~~~~~~~ 85 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLN-ASDLLEGLV-----VAE--LFG----HFLVRLLFELAEKAKP 85 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEe-hhhhhhhhH-----HHH--Hhh----hhhHhHHHHhhccCCC
Confidence 4579999999999999999999988533 45677776 333211100 000 000 0012223334445678
Q ss_pred cEEEEcCCCCH
Q 026207 106 EVIIVDEIGTE 116 (241)
Q Consensus 106 ~vlilDE~~~~ 116 (241)
.++++||+...
T Consensus 86 ~~lilDe~~~~ 96 (151)
T cd00009 86 GVLFIDEIDSL 96 (151)
T ss_pred eEEEEeChhhh
Confidence 99999999865
No 473
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.57 E-value=3.7e-07 Score=94.94 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=44.4
Q ss_pred CCCcccHHHHHHHHHh---cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVEN---HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~---~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|++++|+..+++++. .+|+++|+|||++++|+.... ...+.|.++|+++|..+
T Consensus 810 LSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~ 873 (1809)
T PRK00635 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH 873 (1809)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4556799999999986 699999999999999985432 44567999999999986
No 474
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.57 E-value=3.2e-07 Score=82.16 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=78.3
Q ss_pred ceeeccEEEEEeCCCchHHHHHHHHHHhccccCC------CeEEEEcC-------CcccCCC----CCCcc------c--
Q 026207 22 NKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQ------KRVVIVDT-------SNEIGGD----GDIPH------S-- 76 (241)
Q Consensus 22 ~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g------~~v~~i~~-------~~e~~~~----~~~~~------~-- 76 (241)
...+..++.+.|++|+||||+++.++|....... .-.+.+.. +.+.... ....| .
T Consensus 405 ~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~ 484 (593)
T COG2401 405 EIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLN 484 (593)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchh
Confidence 3456668999999999999999999998753311 00111110 0110000 00000 0
Q ss_pred -c------------ccchhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH--------HHHhCCcEEEEe
Q 026207 77 -A------------IGTARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR--------SIAERGVMLIGT 135 (241)
Q Consensus 77 -~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~--------~~~~~g~~vi~t 135 (241)
. ..+.+...-++.+++.+.-++.+++..|.++++||..+.+|...+. .+.+.|+|++++
T Consensus 485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivv 564 (593)
T COG2401 485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564 (593)
T ss_pred HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 0 0000123345667889999999999999999999999999985543 334569999998
Q ss_pred ecCCChhhhh
Q 026207 136 AHGEWLENII 145 (241)
Q Consensus 136 ~H~~~~~~~~ 145 (241)
+|..+.-+++
T Consensus 565 ThrpEv~~AL 574 (593)
T COG2401 565 THRPEVGNAL 574 (593)
T ss_pred ecCHHHHhcc
Confidence 8887644443
No 475
>PF13173 AAA_14: AAA domain
Probab=98.56 E-value=3e-07 Score=70.34 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=56.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
..+++|.||.|+||||++++++..+.+ ..+++|++ -.+... ...... . ..+...+. ...++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~--~~~~~yi~-~~~~~~------------~~~~~~--~-~~~~~~~~-~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP--PENILYIN-FDDPRD------------RRLADP--D-LLEYFLEL-IKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc--cccceeec-cCCHHH------------HHHhhh--h-hHHHHHHh-hccCC
Confidence 357999999999999999999987762 25678887 322210 000000 0 11112222 22367
Q ss_pred cEEEEcCCCCHHhHHH-HHHHHhCC--cEEEEeecCC
Q 026207 106 EVIIVDEIGTEAEAHA-CRSIAERG--VMLIGTAHGE 139 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~-~~~~~~~g--~~vi~t~H~~ 139 (241)
.++++||++...+... +....+.+ ..++.|....
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccch
Confidence 8999999998866533 33334443 5666655544
No 476
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.55 E-value=4.1e-07 Score=90.31 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=44.9
Q ss_pred CCCcccHHHHHHHHHhcCC---cEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p---~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
+|++++|+..++.++..+| +++|+|||++++|+... ....+.|.++|+++|..+
T Consensus 831 LSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~ 894 (943)
T PRK00349 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD 894 (943)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 4556799999999999999 99999999999999443 244557899999999886
No 477
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=9.6e-08 Score=83.87 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=53.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-||++||||+|||-|++++|...... .+-+- ++|+ .+..+| ++.-..+.+|+.|..+.|.+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~At----FIrvv-gSEl------VqKYiG--------EGaRlVRelF~lArekaPsI 247 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDAT----FIRVV-GSEL------VQKYIG--------EGARLVRELFELAREKAPSI 247 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCce----EEEec-cHHH------HHHHhc--------cchHHHHHHHHHHhhcCCeE
Confidence 48999999999999999999987533 35555 6666 222222 23346688999999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
||+||+.+.
T Consensus 248 IFiDEIDAI 256 (406)
T COG1222 248 IFIDEIDAI 256 (406)
T ss_pred EEEechhhh
Confidence 999998544
No 478
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.54 E-value=1.1e-07 Score=79.46 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=80.8
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCC------CeEEEEcCCcccCCCCCC-ccccccc-----hhhcCCC--CCc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQ------KRVVIVDTSNEIGGDGDI-PHSAIGT-----ARRMQVP--EPS 90 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g------~~v~~i~~~~e~~~~~~~-~~~~~~~-----~~~~~~~--~~~ 90 (241)
...++.|.||||+|||+++.+++...... + .+++|++........... .....+. ..++.+. ...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~-~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLP-GELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcc-cccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCCH
Confidence 44489999999999999999998875433 3 688999843322110000 0000000 0011111 011
Q ss_pred ccHHHHHHHHH----hcCCcEEEEcCCCCHHhH------------HH-------HH-HHHhCCcEEEEeecCCChhhhh-
Q 026207 91 LQHKVMIEAVE----NHMPEVIIVDEIGTEAEA------------HA-------CR-SIAERGVMLIGTAHGEWLENII- 145 (241)
Q Consensus 91 ~~~~~~~~~~l----~~~p~vlilDE~~~~~d~------------~~-------~~-~~~~~g~~vi~t~H~~~~~~~~- 145 (241)
......+..+. ..++++++||.+...... .. +. .+.+.+++++++.|..+..+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~~~~~ 176 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVMF 176 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeeccccc
Confidence 11222222222 457899999998754211 00 11 3456899999999986522211
Q ss_pred ---cCC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCC
Q 026207 146 ---KNP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPP 183 (241)
Q Consensus 146 ---~~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~ 183 (241)
..| .+.++ +|.+++ .+.....+|.+..+|+.+.|+
T Consensus 177 ~~~~~p~~G~~~~~~---~~~ri~l~~~~~~~~~~r~~~~~k~~~~~~ 221 (226)
T cd01393 177 GDPETPAGGNALAHA---STTRLDLRKGRGIIGERRIAKVVKSPALPE 221 (226)
T ss_pred CCCccccCchhhhCc---ccEEEEEEecCCccCcEEEEEEEeCCCCCC
Confidence 112 34445 777766 222111225566667765554
No 479
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.51 E-value=3e-07 Score=81.01 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=85.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCCCC--CcccHHHHHH-HHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPE--PSLQHKVMIE-AVENH 103 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~-~~l~~ 103 (241)
++.|+||||||||||+..++...... |.+++|++ .++...... ...++. ..++.+.. ...++...+. .+...
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId-~E~~~~~~~--a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~ 132 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFID-AEHALDPVY--AKKLGVDLDNLLISQPDTGEQALEIADSLVRSG 132 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEC-ccccHHHHH--HHHcCCCHHHheecCCCCHHHHHHHHHHHHhcc
Confidence 89999999999999999988776544 67899998 443221100 000000 01111111 1112222222 23356
Q ss_pred CCcEEEEcCCCCHHh----------------HH----HHH----HHHhCCcEEEEeecCCChhhh-hcCC-------ccc
Q 026207 104 MPEVIIVDEIGTEAE----------------AH----ACR----SIAERGVMLIGTAHGEWLENI-IKNP-------ILS 151 (241)
Q Consensus 104 ~p~vlilDE~~~~~d----------------~~----~~~----~~~~~g~~vi~t~H~~~~~~~-~~~p-------~l~ 151 (241)
.++++|+|++.+... +. .+. .+...++++|+|-+..+-.+. +..| .+.
T Consensus 133 ~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g~~e~~~GG~~L~ 212 (325)
T cd00983 133 AVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFGNPETTTGGNALK 212 (325)
T ss_pred CCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEccccccccccCCCccCCCchHHh
Confidence 799999999875532 11 111 345679999998776542221 1112 222
Q ss_pred cccccccEEE-e--------CChHHHHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 152 DLIGGVDTVT-L--------GDEEARARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 152 ~l~~~~d~V~-~--------~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
+. +...+ + ++.....+...+.+||+..++.-...|.+. ++|+
T Consensus 213 ~~---ss~rl~lrk~~~~k~~~~~~G~~~~~~v~Knk~~~p~~~~~~~i~~~~Gi 264 (325)
T cd00983 213 FY---SSVRLDIRRIETIKDGDEVIGNRTKVKVVKNKVAPPFKTAEFDILFGEGI 264 (325)
T ss_pred hh---cceEEEEEeecccccCCcccccEEEEEEEecccCCCCCceEEEEEcCccc
Confidence 32 22222 1 111111113456678888888766666664 3454
No 480
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.51 E-value=1.2e-06 Score=73.05 Aligned_cols=78 Identities=27% Similarity=0.334 Sum_probs=44.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
+.++++||||+|||||++.++..+.. .+...+ +..+.. .......+.. ..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~----~~~~~s-g~~i~k--------------------~~dl~~il~~--l~~~~ 103 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGV----NFKITS-GPAIEK--------------------AGDLAAILTN--LKEGD 103 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT------EEEEE-CCC--S--------------------CHHHHHHHHT----TT-
T ss_pred ceEEEECCCccchhHHHHHHHhccCC----CeEecc-chhhhh--------------------HHHHHHHHHh--cCCCc
Confidence 47999999999999999999999863 333333 221100 0001111111 13568
Q ss_pred EEEEcCCCCHHhH--HHHHHHHhCCcE
Q 026207 107 VIIVDEIGTEAEA--HACRSIAERGVM 131 (241)
Q Consensus 107 vlilDE~~~~~d~--~~~~~~~~~g~~ 131 (241)
++|+||+....-. +.+..+.+.|..
T Consensus 104 ILFIDEIHRlnk~~qe~LlpamEd~~i 130 (233)
T PF05496_consen 104 ILFIDEIHRLNKAQQEILLPAMEDGKI 130 (233)
T ss_dssp EEEECTCCC--HHHHHHHHHHHHCSEE
T ss_pred EEEEechhhccHHHHHHHHHHhccCeE
Confidence 9999999877433 344456676665
No 481
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.50 E-value=4.7e-07 Score=83.51 Aligned_cols=67 Identities=22% Similarity=0.271 Sum_probs=52.7
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH-------HHHHHHHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA-------HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~-------~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
..+|++-+|++.++..+..+|+++|+|||+.+.|. ..+.+.+..|.+|++.+-.. |++..+ |
T Consensus 400 ~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl--------pEll~~---~ 468 (500)
T COG1129 400 GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL--------PELLGL---S 468 (500)
T ss_pred hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh--------HHHHhh---C
Confidence 34567779999999999999999999999999998 23346677899988844433 255555 9
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+|+.
T Consensus 469 DRIlV 473 (500)
T COG1129 469 DRILV 473 (500)
T ss_pred CEEEE
Confidence 99998
No 482
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.49 E-value=7.6e-07 Score=75.34 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=62.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc-----------ccCCCeEEEEcCCcccCCC----------CC----Cccc---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS-----------DEFQKRVVIVDTSNEIGGD----------GD----IPHS---AIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~-----------~~~g~~v~~i~~~~e~~~~----------~~----~~~~---~~~ 79 (241)
+.+|.||+|+|||||+.+++-.+. +..+.+|+|++ .++.... .. .... ..+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~-~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g 81 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS-AEDPREEIHRRLEAILQHLEPDDAGDRLFIDSG 81 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE-CCCCHHHHHHHHHHHHhhcCCcCcccceEEecc
Confidence 578999999999999999987543 12346889987 3332110 00 0000 000
Q ss_pred chhhcCCCC-----CcccHHHHHHHHHhcCCcEEEEcCCCC-----HHhHHH-------HH-HHHhCCcEEEEeecCCC
Q 026207 80 TARRMQVPE-----PSLQHKVMIEAVENHMPEVIIVDEIGT-----EAEAHA-------CR-SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 80 ~~~~~~~~~-----~~~~~~~~~~~~l~~~p~vlilDE~~~-----~~d~~~-------~~-~~~~~g~~vi~t~H~~~ 140 (241)
....+.... .....+.+++.+...+|+++|+|.+.+ ..|... +. .+...|++++++.|..+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 82 RIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 000000000 011233344445567999999996543 123321 11 23456999999999886
No 483
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.48 E-value=1.1e-06 Score=81.78 Aligned_cols=70 Identities=24% Similarity=0.278 Sum_probs=49.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||+++++++..+. ..++.++ ...+... . +.....+.+.++..+..+.|.+
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~----~~~~~l~-~~~l~~~------~--------vGese~~l~~~f~~A~~~~P~I 321 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQ----LPLLRLD-VGKLFGG------I--------VGESESRMRQMIRIAEALSPCI 321 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC----CCEEEEE-hHHhccc------c--------cChHHHHHHHHHHHHHhcCCcE
Confidence 489999999999999999999864 4556666 3322110 0 1112345667778888899999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|++||+-..
T Consensus 322 L~IDEID~~ 330 (489)
T CHL00195 322 LWIDEIDKA 330 (489)
T ss_pred EEehhhhhh
Confidence 999998543
No 484
>PRK06893 DNA replication initiation factor; Validated
Probab=98.46 E-value=8e-07 Score=74.84 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=31.0
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
...+++.|+||||+|||+|+.+++..+... +.++.|++
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~ 74 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIP 74 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEee
Confidence 345678999999999999999999987544 46777776
No 485
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.45 E-value=4.1e-07 Score=80.08 Aligned_cols=109 Identities=15% Similarity=0.114 Sum_probs=62.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCCCC--CcccHHHHHH-HHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPE--PSLQHKVMIE-AVENH 103 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~-~~l~~ 103 (241)
++.|+||||||||||+..++...... |.+++|++ .++...... ...++. ..++.+.. ...+....+. .+...
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId-~E~~~~~~~--a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFID-AEHALDPVY--ARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEc-ccchhHHHH--HHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 89999999999999988877766544 67899998 444321100 000000 01111111 1112222222 23346
Q ss_pred CCcEEEEcCCCCHHhH----------------H----HH----HHHHhCCcEEEEeecCCC
Q 026207 104 MPEVIIVDEIGTEAEA----------------H----AC----RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~----------------~----~~----~~~~~~g~~vi~t~H~~~ 140 (241)
+++++|+|++.+.... + .+ ..+...|+++|+|-+..+
T Consensus 133 ~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~ 193 (321)
T TIGR02012 133 AVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIRE 193 (321)
T ss_pred CCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEeccee
Confidence 7999999998755321 1 11 134677999999877654
No 486
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2e-07 Score=80.18 Aligned_cols=92 Identities=24% Similarity=0.379 Sum_probs=65.2
Q ss_pred cceeeEEEEEeEEeeCcceeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhc
Q 026207 5 RNVFLLIVKFFYALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRM 84 (241)
Q Consensus 5 ~~~~~~~~r~~~~~~~~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~ 84 (241)
+++.-|.|+|.. +|.+.-.+..-+|++||||+|||-|.++++.... .....++ ..++. ...+|
T Consensus 146 KEAVILPIKFPq-lFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn----STFFSvS-SSDLv------SKWmG----- 208 (439)
T KOG0739|consen 146 KEAVILPIKFPQ-LFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN----STFFSVS-SSDLV------SKWMG----- 208 (439)
T ss_pred Hhheeecccchh-hhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC----CceEEee-hHHHH------HHHhc-----
Confidence 344445666664 6777777888899999999999999999998765 2345565 44431 11111
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCH
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~ 116 (241)
..+...+.+++.+..+.|.+||+||+.+.
T Consensus 209 ---ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 209 ---ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred ---cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 12345677889999999999999998643
No 487
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.8e-07 Score=84.63 Aligned_cols=69 Identities=25% Similarity=0.293 Sum_probs=53.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-||++||||+|||-|.++++|... -...|.. +.|+. .+-+.-+.-+.+.+++.+....|.+
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA~----VPFF~~s-GSEFd--------------Em~VGvGArRVRdLF~aAk~~APcI 399 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEAG----VPFFYAS-GSEFD--------------EMFVGVGARRVRDLFAAAKARAPCI 399 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhcccC----CCeEecc-ccchh--------------hhhhcccHHHHHHHHHHHHhcCCeE
Confidence 389999999999999999999753 4556666 76662 1222223457889999999999999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
|||||+.+
T Consensus 400 IFIDEiDa 407 (752)
T KOG0734|consen 400 IFIDEIDA 407 (752)
T ss_pred EEEechhh
Confidence 99999854
No 488
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.9e-07 Score=85.48 Aligned_cols=80 Identities=26% Similarity=0.281 Sum_probs=61.8
Q ss_pred eeCcceeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHH
Q 026207 18 LYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMI 97 (241)
Q Consensus 18 ~~~~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (241)
+|+...+...-+|+.||||+|||-+++++|...+- ..+.+. +.|+. .+-+...+.+.|..+
T Consensus 697 LfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL----~FlSVK-GPELL--------------NMYVGqSE~NVR~VF 757 (953)
T KOG0736|consen 697 LFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL----NFLSVK-GPELL--------------NMYVGQSEENVREVF 757 (953)
T ss_pred hhhccccccceeEEECCCCCchHHHHHHHHhhcee----eEEeec-CHHHH--------------HHHhcchHHHHHHHH
Confidence 44444555667999999999999999999998863 346666 66652 233344577899999
Q ss_pred HHHHhcCCcEEEEcCCCCH
Q 026207 98 EAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~~~~ 116 (241)
+.|....|-+||+||+.+.
T Consensus 758 erAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 758 ERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHhhccCCeEEEecccccc
Confidence 9999999999999998654
No 489
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.6e-07 Score=85.06 Aligned_cols=70 Identities=23% Similarity=0.316 Sum_probs=53.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||.||||||||.|.+++++.+. -.++.|. ..|+.. .. ....+.+.+..+..+....|.+
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~----vPf~~is-ApeivS------Gv--------SGESEkkiRelF~~A~~~aPci 285 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELG----VPFLSIS-APEIVS------GV--------SGESEKKIRELFDQAKSNAPCI 285 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcC----CceEeec-chhhhc------cc--------CcccHHHHHHHHHHHhccCCeE
Confidence 589999999999999999999874 4567776 444311 00 0112568889999999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
+|+|||.+.
T Consensus 286 vFiDeIDAI 294 (802)
T KOG0733|consen 286 VFIDEIDAI 294 (802)
T ss_pred EEeeccccc
Confidence 999998655
No 490
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.41 E-value=1.1e-06 Score=74.59 Aligned_cols=137 Identities=21% Similarity=0.340 Sum_probs=70.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEE--EcCCcccCCCCCCccccccchhhcCCC------------CC---
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVI--VDTSNEIGGDGDIPHSAIGTARRMQVP------------EP--- 89 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~--i~~~~e~~~~~~~~~~~~~~~~~~~~~------------~~--- 89 (241)
-++.|+||||+|||||+..+...+... |.+|.. +|..+...+. . .+|.-.|+... +.
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSSp~tGG-A----lLGDRiRM~~~~~d~~vfIRS~atRG~l 103 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSSPFTGG-A----LLGDRIRMQELSRDPGVFIRSMATRGSL 103 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGGGCC--------SS--GGGCHHHHTSTTEEEEEE---SSH
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCCCCCCC-c----ccccHHHhcCcCCCCCEEEeecCcCCCC
Confidence 389999999999999999999988765 666654 4522222111 1 11111111110 00
Q ss_pred -cc--cHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeec--CCChhhhhcCCccccccccccEEEe--
Q 026207 90 -SL--QHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAH--GEWLENIIKNPILSDLIGGVDTVTL-- 162 (241)
Q Consensus 90 -~~--~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H--~~~~~~~~~~p~l~~l~~~~d~V~~-- 162 (241)
+. ....++..+.....|+||+.-++.+...-.+....+ .+++...- +.+++..- ..+-++ +|-+++
T Consensus 104 GGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD--~~v~v~~Pg~GD~iQ~~K--aGimEi---aDi~vVNK 176 (266)
T PF03308_consen 104 GGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMAD--TVVLVLVPGLGDEIQAIK--AGIMEI---ADIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSS--EEEEEEESSTCCCCCTB---TTHHHH----SEEEEE-
T ss_pred CCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcC--eEEEEecCCCccHHHHHh--hhhhhh---ccEEEEeC
Confidence 11 445566677778999999999998876655555443 33332222 22212111 134445 788888
Q ss_pred CChHHHHHHHHHhhh
Q 026207 163 GDEEARARRCQKSIL 177 (241)
Q Consensus 163 ~~~~~~~~~~~~~~k 177 (241)
.+.... +++.+.++
T Consensus 177 aD~~gA-~~~~~~l~ 190 (266)
T PF03308_consen 177 ADRPGA-DRTVRDLR 190 (266)
T ss_dssp -SHHHH-HHHHHHHH
T ss_pred CChHHH-HHHHHHHH
Confidence 553332 24444443
No 491
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=8.9e-07 Score=71.60 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=26.8
Q ss_pred cceeeccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 21 INKIIFDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 21 ~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
......+++.|+|.||+|||||+.+|+....
T Consensus 32 ~LeF~apIT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 32 RLEFRAPITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred hccccCceEEEEcCCCccHHHHHHHHHhhcc
Confidence 4556678999999999999999999998764
No 492
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=98.39 E-value=7.5e-07 Score=72.46 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=58.3
Q ss_pred eEEeeCcceeeccEEEEEeCCCchHHHHHHHHHHhcccc---------CCCeEEEEcCCcccCCC---------CCCcc-
Q 026207 15 FYALYSINKIIFDFFLSYFRPGVGKTTVMREIARVLSDE---------FQKRVVIVDTSNEIGGD---------GDIPH- 75 (241)
Q Consensus 15 ~~~~~~~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~---------~g~~v~~i~~~~e~~~~---------~~~~~- 75 (241)
+..++...-....+++|.||+|+||||++..++..+... .+.+|+|++ .+..... .....
T Consensus 21 ~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~-~E~~~~~~~~rl~~~~~~~~~~ 99 (193)
T PF13481_consen 21 LDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYIS-LEDSESQIARRLRALLQDYDDD 99 (193)
T ss_dssp --EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEE-SSS-HHHHHHHHHHHHTTS-HH
T ss_pred cceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEe-ccCCHHHHHHHHHHHhcccCCc
Confidence 344455443445699999999999999999999877642 246889997 3222100 00000
Q ss_pred ccccchh-------hcCC-CCCc----ccHHHHHHHHHh-cCCcEEEEcCCCCHHhH-----H-------HHH-HHHhCC
Q 026207 76 SAIGTAR-------RMQV-PEPS----LQHKVMIEAVEN-HMPEVIIVDEIGTEAEA-----H-------ACR-SIAERG 129 (241)
Q Consensus 76 ~~~~~~~-------~~~~-~~~~----~~~~~~~~~~l~-~~p~vlilDE~~~~~d~-----~-------~~~-~~~~~g 129 (241)
....... ++.. .+.. ...+.+.+.+.. .+|+++|||.++..... . .+. .+...|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~ 179 (193)
T PF13481_consen 100 ANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYG 179 (193)
T ss_dssp HHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH-
T ss_pred cceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 0000000 0000 0111 112334455555 68999999986544321 1 111 345679
Q ss_pred cEEEEeecCCC
Q 026207 130 VMLIGTAHGEW 140 (241)
Q Consensus 130 ~~vi~t~H~~~ 140 (241)
++++.+.|.++
T Consensus 180 ~~vi~v~H~~K 190 (193)
T PF13481_consen 180 VAVILVHHTNK 190 (193)
T ss_dssp -EEEEEEEE--
T ss_pred CEEEEEECCCC
Confidence 99999999886
No 493
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=5.9e-07 Score=81.05 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=43.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHH----HhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSI----AERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~----~~~g~~vi~t~H~~~ 140 (241)
-++++.++++.+++++-..|.+++||||++.+|..++... -.--.|+++++|...
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQg 470 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQG 470 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccc
Confidence 3567889999999999999999999999999998655422 112467888889876
No 494
>PRK09354 recA recombinase A; Provisional
Probab=98.35 E-value=9.5e-07 Score=78.49 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=63.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCC--CCCcccHHHHH-HHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQV--PEPSLQHKVMI-EAVENH 103 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~-~~~l~~ 103 (241)
++.|+||+|||||||+.+++...... |.+++|++ .++...... ...++. ..++-+ .+...++...+ ..+...
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId-~E~s~~~~~--a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~ 137 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFID-AEHALDPVY--AKKLGVDIDNLLVSQPDTGEQALEIADTLVRSG 137 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEC-CccchHHHH--HHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcC
Confidence 89999999999999999988776544 68899999 443321100 000000 001111 11111222222 223345
Q ss_pred CCcEEEEcCCCCHHh----------------HH----HH----HHHHhCCcEEEEeecCCC
Q 026207 104 MPEVIIVDEIGTEAE----------------AH----AC----RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 104 ~p~vlilDE~~~~~d----------------~~----~~----~~~~~~g~~vi~t~H~~~ 140 (241)
.++++|+|++.+... +. .+ ..+...++++|+|-+...
T Consensus 138 ~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~ 198 (349)
T PRK09354 138 AVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIRE 198 (349)
T ss_pred CCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeee
Confidence 799999999875532 01 01 134677999999877654
No 495
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3.4e-07 Score=85.76 Aligned_cols=71 Identities=25% Similarity=0.283 Sum_probs=54.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-||++|||||||||+.++++.... ...+++. +.|+.. ..+...+-..+..|..+....|.+
T Consensus 470 GVLlyGPPGC~KT~lAkalAne~~----~nFlsvk-gpEL~s--------------k~vGeSEr~ir~iF~kAR~~aP~I 530 (693)
T KOG0730|consen 470 GVLLYGPPGCGKTLLAKALANEAG----MNFLSVK-GPELFS--------------KYVGESERAIREVFRKARQVAPCI 530 (693)
T ss_pred eEEEECCCCcchHHHHHHHhhhhc----CCeeecc-CHHHHH--------------HhcCchHHHHHHHHHHHhhcCCeE
Confidence 489999999999999999998764 4568887 666621 122233556778899999999999
Q ss_pred EEEcCCCCHH
Q 026207 108 IIVDEIGTEA 117 (241)
Q Consensus 108 lilDE~~~~~ 117 (241)
+|+||+.+..
T Consensus 531 iFfDEiDsi~ 540 (693)
T KOG0730|consen 531 IFFDEIDALA 540 (693)
T ss_pred EehhhHHhHh
Confidence 9999986554
No 496
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.4e-07 Score=84.47 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=53.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-||++||||||||-|.+++|..-. .+.+.+- +.|+.. ..+...+--.+..++++....|.+
T Consensus 547 GvLL~GPPGCGKTLlAKAVANEag----~NFisVK-GPELlN--------------kYVGESErAVR~vFqRAR~saPCV 607 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANEAG----ANFISVK-GPELLN--------------KYVGESERAVRQVFQRARASAPCV 607 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhhcc----CceEeec-CHHHHH--------------HHhhhHHHHHHHHHHHhhcCCCeE
Confidence 389999999999999999998753 5567777 666621 122233456778899999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
||+||+.+.
T Consensus 608 IFFDEiDaL 616 (802)
T KOG0733|consen 608 IFFDEIDAL 616 (802)
T ss_pred EEecchhhc
Confidence 999998655
No 497
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.32 E-value=7.1e-07 Score=81.07 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=46.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.++|.||||||||+++++++..... ..+.+. +.++. .. .........+..+..+....|.+
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l~~----~fi~i~-~s~l~------~k--------~~ge~~~~lr~lf~~A~~~~P~I 241 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHTTA----TFIRVV-GSEFV------QK--------YLGEGPRMVRDVFRLARENAPSI 241 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCC----CEEEEe-hHHHH------HH--------hcchhHHHHHHHHHHHHhcCCeE
Confidence 5889999999999999999998642 334443 22221 00 01111234566777888899999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
|++||+..
T Consensus 242 LfIDEID~ 249 (398)
T PTZ00454 242 IFIDEVDS 249 (398)
T ss_pred EEEECHhh
Confidence 99999754
No 498
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.31 E-value=6.7e-07 Score=83.56 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=47.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-++|+||||+|||++++++++... .++++++ ..++.. ..........+..+..+..+.|.+
T Consensus 90 giLL~GppGtGKT~la~alA~~~~----~~~~~i~-~~~~~~--------------~~~g~~~~~l~~~f~~a~~~~p~I 150 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAG----VPFFSIS-GSDFVE--------------MFVGVGASRVRDLFEQAKKNAPCI 150 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcC----CCeeecc-HHHHHH--------------HHhcccHHHHHHHHHHHHhcCCCE
Confidence 489999999999999999998753 4455555 332210 001112234567788888899999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
|++||+..
T Consensus 151 l~iDEid~ 158 (495)
T TIGR01241 151 IFIDEIDA 158 (495)
T ss_pred EEEechhh
Confidence 99999844
No 499
>CHL00176 ftsH cell division protein; Validated
Probab=98.31 E-value=2.1e-06 Score=82.21 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=48.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-++|.||||+|||++++++++... ..+++++ ..++.. .. ........+..+..+....|.+
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~----~p~i~is-~s~f~~------~~--------~g~~~~~vr~lF~~A~~~~P~I 278 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAE----VPFFSIS-GSEFVE------MF--------VGVGAARVRDLFKKAKENSPCI 278 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----CCeeecc-HHHHHH------Hh--------hhhhHHHHHHHHHHHhcCCCcE
Confidence 489999999999999999998752 4556665 333210 00 0011234566788888899999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|+|||+...
T Consensus 279 LfIDEID~l 287 (638)
T CHL00176 279 VFIDEIDAV 287 (638)
T ss_pred EEEecchhh
Confidence 999999543
No 500
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.4e-06 Score=72.14 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=50.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+|+.||||||||.|.++++...... .+.+- ++|+ .+..+| .+--..+..+..+....|.+
T Consensus 191 gvllygppg~gktml~kava~~t~a~----firvv-gsef------vqkylg--------egprmvrdvfrlakenapsi 251 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAA----FIRVV-GSEF------VQKYLG--------EGPRMVRDVFRLAKENAPSI 251 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchh----eeeec-cHHH------HHHHhc--------cCcHHHHHHHHHHhccCCcE
Confidence 48999999999999999999876543 23333 5555 222221 12234577888999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
||+||+.+.
T Consensus 252 ifideidai 260 (408)
T KOG0727|consen 252 IFIDEIDAI 260 (408)
T ss_pred EEeehhhhH
Confidence 999998654
Done!