Query 026207
Match_columns 241
No_of_seqs 315 out of 2339
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 08:06:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 99.8 2.4E-19 8.1E-24 153.7 6.7 124 28-162 36-216 (275)
2 3fvq_A Fe(3+) IONS import ATP- 99.8 9E-19 3.1E-23 155.0 8.5 121 28-162 32-211 (359)
3 3tui_C Methionine import ATP-b 99.8 5.9E-19 2E-23 156.3 7.2 151 1-162 24-236 (366)
4 1vpl_A ABC transporter, ATP-bi 99.8 3.1E-19 1.1E-23 151.5 5.1 149 1-162 15-218 (256)
5 4g1u_C Hemin import ATP-bindin 99.8 3.1E-19 1.1E-23 152.3 4.4 124 28-162 39-220 (266)
6 3rlf_A Maltose/maltodextrin im 99.7 2.3E-18 7.9E-23 153.4 8.5 124 28-162 31-206 (381)
7 2olj_A Amino acid ABC transpor 99.7 1.9E-18 6.6E-23 147.1 6.3 149 1-162 24-231 (263)
8 1v43_A Sugar-binding transport 99.7 4.2E-18 1.4E-22 151.6 8.6 124 28-162 39-214 (372)
9 2nq2_C Hypothetical ABC transp 99.7 9.6E-18 3.3E-22 142.1 9.4 128 24-162 28-201 (253)
10 2onk_A Molybdate/tungstate ABC 99.7 2.8E-18 9.5E-23 144.3 5.9 143 1-162 1-199 (240)
11 2yyz_A Sugar ABC transporter, 99.7 7.5E-18 2.6E-22 149.3 8.6 149 1-162 3-206 (359)
12 2pcj_A ABC transporter, lipopr 99.7 1E-17 3.5E-22 139.4 8.6 147 1-162 4-211 (224)
13 1g6h_A High-affinity branched- 99.7 1.5E-17 5.2E-22 141.1 9.8 66 86-162 153-225 (257)
14 1b0u_A Histidine permease; ABC 99.7 5.3E-18 1.8E-22 144.3 6.9 66 86-162 153-225 (262)
15 3tif_A Uncharacterized ABC tra 99.7 2E-17 6.9E-22 138.6 9.7 150 1-162 1-217 (235)
16 2it1_A 362AA long hypothetical 99.7 1.1E-17 3.6E-22 148.5 7.9 124 28-162 31-206 (362)
17 1oxx_K GLCV, glucose, ABC tran 99.7 6.7E-18 2.3E-22 149.4 6.1 124 28-162 33-213 (353)
18 1ji0_A ABC transporter; ATP bi 99.7 1.5E-17 5.1E-22 139.8 7.9 128 24-162 29-211 (240)
19 3jvv_A Twitching mobility prot 99.7 5.5E-17 1.9E-21 143.8 11.7 114 24-142 121-234 (356)
20 1z47_A CYSA, putative ABC-tran 99.7 9.4E-18 3.2E-22 148.4 6.8 123 28-162 43-218 (355)
21 3d31_A Sulfate/molybdate ABC t 99.7 1.3E-17 4.4E-22 147.3 7.3 148 1-162 1-200 (348)
22 1g29_1 MALK, maltose transport 99.7 1.3E-17 4.4E-22 148.6 7.3 148 1-162 3-212 (372)
23 1sgw_A Putative ABC transporte 99.7 1.2E-17 4.2E-22 138.1 6.5 124 28-162 37-205 (214)
24 2yz2_A Putative ABC transporte 99.7 5.3E-17 1.8E-21 138.4 10.5 148 1-162 2-210 (266)
25 2ihy_A ABC transporter, ATP-bi 99.7 1.9E-17 6.4E-22 142.2 7.1 66 86-162 161-235 (279)
26 2d2e_A SUFC protein; ABC-ATPas 99.7 1.5E-16 5.1E-21 134.5 10.5 54 87-140 144-204 (250)
27 1mv5_A LMRA, multidrug resista 99.7 1.3E-16 4.4E-21 134.3 9.4 133 1-140 1-199 (243)
28 2cbz_A Multidrug resistance-as 99.7 1.7E-16 5.9E-21 133.1 9.3 123 28-162 33-200 (237)
29 1tf7_A KAIC; homohexamer, hexa 99.7 3.7E-17 1.3E-21 151.8 4.3 182 28-216 283-496 (525)
30 2qi9_C Vitamin B12 import ATP- 99.6 5.7E-17 1.9E-21 137.0 4.5 144 1-162 4-205 (249)
31 2pze_A Cystic fibrosis transme 99.6 7E-17 2.4E-21 134.8 4.4 113 28-140 36-191 (229)
32 2ff7_A Alpha-hemolysin translo 99.6 2.5E-16 8.5E-21 132.9 7.5 112 28-140 37-205 (247)
33 2ixe_A Antigen peptide transpo 99.6 4.3E-16 1.5E-20 133.1 7.6 113 28-140 47-218 (271)
34 2zu0_C Probable ATP-dependent 99.6 7E-16 2.4E-20 131.6 8.5 54 87-140 165-225 (267)
35 2pjz_A Hypothetical protein ST 99.6 2E-15 6.9E-20 128.4 11.2 146 1-162 1-198 (263)
36 2eyu_A Twitching motility prot 99.6 7.6E-15 2.6E-19 124.7 12.1 113 25-142 24-136 (261)
37 2ghi_A Transport protein; mult 99.6 1.8E-15 6.3E-20 128.5 8.0 111 28-140 48-215 (260)
38 3nh6_A ATP-binding cassette SU 99.6 7.5E-16 2.5E-20 133.8 5.3 113 28-140 82-250 (306)
39 3ozx_A RNAse L inhibitor; ATP 99.6 2.3E-15 7.8E-20 140.0 8.9 124 28-162 296-458 (538)
40 3gd7_A Fusion complex of cysti 99.6 8.3E-16 2.9E-20 137.5 5.7 54 87-140 156-215 (390)
41 3bk7_A ABC transporter ATP-bin 99.6 4.2E-15 1.4E-19 140.0 10.2 124 28-162 384-544 (607)
42 2bbs_A Cystic fibrosis transme 99.6 2.5E-15 8.7E-20 129.5 7.4 117 24-140 61-220 (290)
43 1yqt_A RNAse L inhibitor; ATP- 99.6 4.4E-15 1.5E-19 138.2 8.8 125 27-162 313-474 (538)
44 2ehv_A Hypothetical protein PH 99.6 2.8E-15 9.5E-20 125.0 6.6 165 28-199 32-245 (251)
45 4a74_A DNA repair and recombin 99.6 2.2E-15 7.6E-20 124.1 5.8 159 27-196 26-229 (231)
46 3j16_B RLI1P; ribosome recycli 99.6 4.6E-15 1.6E-19 139.7 8.2 124 28-162 380-540 (608)
47 2ewv_A Twitching motility prot 99.6 1.5E-14 5.3E-19 128.8 10.8 115 26-145 136-250 (372)
48 3b5x_A Lipid A export ATP-bind 99.5 4.6E-15 1.6E-19 139.3 7.2 123 28-162 371-550 (582)
49 2pt7_A CAG-ALFA; ATPase, prote 99.5 4.7E-14 1.6E-18 123.7 10.9 105 27-141 172-277 (330)
50 3bk7_A ABC transporter ATP-bin 99.5 2.2E-14 7.4E-19 135.2 8.9 123 28-162 119-300 (607)
51 1yqt_A RNAse L inhibitor; ATP- 99.5 2.8E-14 9.4E-19 132.8 9.2 67 85-162 157-230 (538)
52 3ozx_A RNAse L inhibitor; ATP 99.5 4.6E-14 1.6E-18 131.3 10.0 67 84-162 136-209 (538)
53 2w0m_A SSO2452; RECA, SSPF, un 99.5 3.1E-14 1.1E-18 117.0 7.5 168 27-199 24-230 (235)
54 3b60_A Lipid A export ATP-bind 99.5 2.5E-14 8.7E-19 134.3 6.5 122 28-162 371-550 (582)
55 3qf4_A ABC transporter, ATP-bi 99.5 1.1E-14 3.6E-19 137.0 3.7 123 28-162 371-549 (587)
56 4a82_A Cystic fibrosis transme 99.5 1.1E-14 3.6E-19 136.8 2.5 126 28-165 369-551 (578)
57 3j16_B RLI1P; ribosome recycli 99.4 6.9E-14 2.4E-18 131.7 6.9 68 84-162 219-293 (608)
58 2oap_1 GSPE-2, type II secreti 99.4 4.1E-13 1.4E-17 124.1 11.6 114 28-147 262-375 (511)
59 3qf4_B Uncharacterized ABC tra 99.4 7.5E-14 2.6E-18 131.5 5.6 123 28-162 383-561 (598)
60 2dr3_A UPF0273 protein PH0284; 99.4 2.7E-13 9.3E-18 112.6 6.8 169 26-199 23-234 (247)
61 1p9r_A General secretion pathw 99.4 3.3E-12 1.1E-16 115.3 13.5 111 25-145 166-277 (418)
62 2yl4_A ATP-binding cassette SU 99.4 8.8E-13 3E-17 124.1 9.0 126 28-165 372-557 (595)
63 1n0w_A DNA repair protein RAD5 99.4 2.2E-12 7.6E-17 106.9 10.2 163 27-197 25-239 (243)
64 2iw3_A Elongation factor 3A; a 99.4 2.9E-12 9.8E-17 125.7 11.7 124 28-162 463-617 (986)
65 2iw3_A Elongation factor 3A; a 99.4 2.1E-13 7.3E-18 133.6 3.7 67 85-162 900-970 (986)
66 1pzn_A RAD51, DNA repair and r 99.4 3.3E-12 1.1E-16 112.7 10.9 161 28-196 133-347 (349)
67 4gp7_A Metallophosphoesterase; 99.3 7.4E-13 2.5E-17 105.2 5.3 114 24-140 6-160 (171)
68 4f4c_A Multidrug resistance pr 99.3 3.4E-13 1.2E-17 136.9 4.0 137 28-179 1107-1305(1321)
69 2cvh_A DNA repair and recombin 99.3 3.4E-12 1.2E-16 104.2 8.8 164 26-198 20-218 (220)
70 1cr0_A DNA primase/helicase; R 99.3 2E-12 6.9E-17 111.0 7.5 155 28-186 37-260 (296)
71 1ye8_A Protein THEP1, hypothet 99.3 1.7E-12 5.8E-17 104.0 6.2 110 28-138 2-139 (178)
72 3hr8_A Protein RECA; alpha and 99.3 2.2E-12 7.4E-17 114.1 7.4 156 28-196 63-270 (356)
73 3ux8_A Excinuclease ABC, A sub 99.3 4.7E-12 1.6E-16 120.7 10.1 56 85-140 201-265 (670)
74 4f4c_A Multidrug resistance pr 99.3 1.2E-12 4.1E-17 132.9 6.3 123 28-162 446-624 (1321)
75 3lda_A DNA repair protein RAD5 99.3 7.5E-12 2.6E-16 112.3 8.5 159 27-197 179-393 (400)
76 3g5u_A MCG1178, multidrug resi 99.3 2.1E-12 7.3E-17 130.8 5.4 123 28-162 1061-1241(1284)
77 3g5u_A MCG1178, multidrug resi 99.2 2.6E-12 9E-17 130.2 4.5 123 28-162 418-596 (1284)
78 3b85_A Phosphate starvation-in 99.2 1.9E-12 6.6E-17 106.3 2.7 110 27-140 23-159 (208)
79 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 1E-11 3.5E-16 110.2 7.5 55 86-140 279-346 (365)
80 2gza_A Type IV secretion syste 99.2 3.9E-11 1.3E-15 106.3 10.8 114 27-145 176-293 (361)
81 3ux8_A Excinuclease ABC, A sub 99.2 1.7E-11 5.9E-16 116.7 8.3 56 85-140 542-607 (670)
82 4aby_A DNA repair protein RECN 99.2 1.2E-11 4E-16 111.0 5.9 53 87-140 296-357 (415)
83 2kjq_A DNAA-related protein; s 99.1 1E-10 3.4E-15 91.0 7.2 84 25-139 35-125 (149)
84 2vf7_A UVRA2, excinuclease ABC 99.1 6.5E-11 2.2E-15 114.8 6.0 65 86-162 730-804 (842)
85 3ec2_A DNA replication protein 99.1 8E-11 2.7E-15 93.6 5.4 98 27-140 39-144 (180)
86 1nlf_A Regulatory protein REPA 99.1 7.1E-10 2.4E-14 94.4 10.4 169 27-199 31-262 (279)
87 2zts_A Putative uncharacterize 99.0 1.9E-10 6.6E-15 95.3 5.7 167 28-198 32-244 (251)
88 3qkt_A DNA double-strand break 99.0 1.2E-09 3.9E-14 95.9 10.5 64 87-162 249-325 (339)
89 2b8t_A Thymidine kinase; deoxy 99.0 6.2E-10 2.1E-14 92.2 6.7 131 21-162 7-148 (223)
90 2npi_A Protein CLP1; CLP1-PCF1 99.0 2.6E-10 8.8E-15 104.1 4.2 113 27-140 139-299 (460)
91 2r6f_A Excinuclease ABC subuni 98.9 9.1E-10 3.1E-14 107.6 7.5 65 86-162 845-919 (972)
92 3pih_A Uvrabc system protein A 98.9 3.8E-09 1.3E-13 103.3 11.3 66 85-162 804-879 (916)
93 1v5w_A DMC1, meiotic recombina 98.9 6.5E-09 2.2E-13 91.3 11.7 158 28-197 124-339 (343)
94 1e69_A Chromosome segregation 98.9 7.5E-09 2.6E-13 90.0 11.6 54 87-140 220-283 (322)
95 1tq4_A IIGP1, interferon-induc 98.9 7.2E-11 2.4E-15 106.3 -1.3 115 26-140 69-236 (413)
96 2zr9_A Protein RECA, recombina 98.9 7.6E-10 2.6E-14 97.6 5.2 157 27-196 62-270 (349)
97 2z43_A DNA repair and recombin 98.9 4E-09 1.4E-13 91.9 9.7 157 28-196 109-319 (324)
98 1tf7_A KAIC; homohexamer, hexa 98.9 2.9E-09 9.9E-14 98.7 9.0 129 28-162 41-206 (525)
99 3thx_A DNA mismatch repair pro 98.9 3.5E-09 1.2E-13 103.9 9.8 106 27-142 663-788 (934)
100 1ewq_A DNA mismatch repair pro 98.9 1.5E-09 5.2E-14 104.5 6.8 106 26-140 576-699 (765)
101 2ygr_A Uvrabc system protein A 98.9 4.4E-09 1.5E-13 103.1 9.6 65 86-162 863-937 (993)
102 2o8b_B DNA mismatch repair pro 98.9 8.9E-10 3E-14 109.2 4.5 111 27-142 790-915 (1022)
103 3b9q_A Chloroplast SRP recepto 98.9 1.7E-09 6E-14 93.5 5.4 111 27-139 101-257 (302)
104 3thx_B DNA mismatch repair pro 98.9 1.3E-09 4.4E-14 106.7 5.0 112 27-142 674-799 (918)
105 3cmw_A Protein RECA, recombina 98.8 3.9E-09 1.3E-13 108.4 7.6 156 28-196 734-941 (1706)
106 2og2_A Putative signal recogni 98.8 3.4E-09 1.2E-13 93.7 6.2 111 27-139 158-314 (359)
107 3io5_A Recombination and repai 98.8 2.2E-08 7.6E-13 86.7 10.8 111 24-144 26-176 (333)
108 2r6a_A DNAB helicase, replicat 98.8 7.7E-09 2.6E-13 94.1 6.6 35 28-62 205-239 (454)
109 2i1q_A DNA repair and recombin 98.7 2.3E-08 7.9E-13 86.7 8.8 158 27-196 99-320 (322)
110 3aez_A Pantothenate kinase; tr 98.7 8.4E-10 2.9E-14 95.9 -1.1 92 28-119 92-209 (312)
111 3sop_A Neuronal-specific septi 98.7 2.8E-09 9.5E-14 90.8 2.0 28 28-55 4-31 (270)
112 1rj9_A FTSY, signal recognitio 98.7 5.1E-08 1.8E-12 84.3 9.3 35 27-62 103-137 (304)
113 3bh0_A DNAB-like replicative h 98.7 3.7E-08 1.3E-12 85.4 8.3 34 28-62 70-103 (315)
114 4b4t_J 26S protease regulatory 98.7 2.2E-08 7.4E-13 89.6 6.2 70 28-116 184-253 (405)
115 2i3b_A HCR-ntpase, human cance 98.7 6.5E-09 2.2E-13 83.9 2.4 27 28-55 3-29 (189)
116 2ce7_A Cell division protein F 98.6 5.9E-08 2E-12 88.8 8.4 68 29-115 52-119 (476)
117 1wb9_A DNA mismatch repair pro 98.6 2.5E-08 8.6E-13 96.5 6.2 107 27-140 608-731 (800)
118 3cmw_A Protein RECA, recombina 98.6 1.9E-08 6.6E-13 103.4 5.0 151 28-191 385-586 (1706)
119 4b4t_M 26S protease regulatory 98.6 3.9E-08 1.3E-12 88.9 5.9 69 28-115 217-285 (434)
120 1u94_A RECA protein, recombina 98.6 3.4E-08 1.1E-12 87.3 5.2 163 27-196 64-272 (356)
121 4b4t_L 26S protease subunit RP 98.6 4.8E-08 1.6E-12 88.3 6.3 69 28-115 217-285 (437)
122 3cmu_A Protein RECA, recombina 98.6 6.2E-08 2.1E-12 100.8 7.4 156 28-196 385-592 (2050)
123 3b9p_A CG5977-PA, isoform A; A 98.6 1.1E-07 3.7E-12 81.1 7.3 73 25-116 53-125 (297)
124 4b4t_I 26S protease regulatory 98.6 5.7E-08 1.9E-12 87.4 5.7 69 28-115 218-286 (437)
125 2x8a_A Nuclear valosin-contain 98.6 7.7E-08 2.6E-12 81.9 6.1 74 23-116 42-115 (274)
126 3cf0_A Transitional endoplasmi 98.5 2E-07 6.9E-12 80.1 8.7 72 27-117 50-121 (301)
127 4b4t_K 26S protease regulatory 98.5 7.4E-08 2.5E-12 87.0 6.1 68 28-114 208-275 (428)
128 1xp8_A RECA protein, recombina 98.5 1.4E-07 4.9E-12 83.5 7.7 156 28-196 76-284 (366)
129 1xwi_A SKD1 protein; VPS4B, AA 98.5 2.1E-07 7E-12 80.9 8.3 74 25-116 44-117 (322)
130 4b4t_H 26S protease regulatory 98.5 8.2E-08 2.8E-12 87.1 5.6 70 28-116 245-314 (467)
131 1sxj_E Activator 1 40 kDa subu 98.5 3.2E-07 1.1E-11 79.9 8.9 25 29-53 39-64 (354)
132 3bgw_A DNAB-like replicative h 98.5 3.8E-07 1.3E-11 82.8 9.6 157 27-185 198-422 (444)
133 2q6t_A DNAB replication FORK h 98.5 2.2E-07 7.4E-12 84.3 7.7 35 28-62 202-236 (444)
134 1vma_A Cell division protein F 98.5 6.6E-08 2.2E-12 83.7 3.9 86 27-116 105-198 (306)
135 2orw_A Thymidine kinase; TMTK, 98.5 1.6E-07 5.4E-12 75.3 5.2 107 27-140 4-114 (184)
136 1lv7_A FTSH; alpha/beta domain 98.5 2.9E-07 9.8E-12 76.9 7.0 67 28-113 47-113 (257)
137 3h4m_A Proteasome-activating n 98.5 2.1E-07 7.1E-12 78.8 6.2 71 27-116 52-122 (285)
138 1q57_A DNA primase/helicase; d 98.4 4.2E-07 1.4E-11 83.6 8.6 158 28-186 244-467 (503)
139 2z4s_A Chromosomal replication 98.4 1.2E-07 4E-12 86.0 4.4 98 27-139 131-237 (440)
140 3bos_A Putative DNA replicatio 98.4 5.5E-07 1.9E-11 73.5 7.7 36 26-62 52-87 (242)
141 3szr_A Interferon-induced GTP- 98.4 1.4E-07 4.8E-12 88.8 4.4 27 26-52 45-71 (608)
142 2qz4_A Paraplegin; AAA+, SPG7, 98.4 3.3E-07 1.1E-11 76.4 6.2 71 27-116 40-110 (262)
143 2jeo_A Uridine-cytidine kinase 98.4 8.2E-07 2.8E-11 73.9 8.3 36 28-63 27-66 (245)
144 2r8r_A Sensor protein; KDPD, P 98.4 4.3E-07 1.5E-11 75.0 6.2 113 28-145 8-136 (228)
145 2zan_A Vacuolar protein sortin 98.4 9E-07 3.1E-11 80.2 8.9 73 26-116 167-239 (444)
146 1ixz_A ATP-dependent metallopr 98.4 1.9E-07 6.5E-12 77.9 3.9 70 25-114 49-118 (254)
147 1fnn_A CDC6P, cell division co 98.4 1.3E-06 4.6E-11 76.5 9.4 107 28-140 46-170 (389)
148 3eie_A Vacuolar protein sortin 98.4 2.8E-07 9.6E-12 79.9 5.0 73 25-116 50-122 (322)
149 4a1f_A DNAB helicase, replicat 98.4 1.1E-06 3.8E-11 76.9 8.5 134 27-162 47-237 (338)
150 1xx6_A Thymidine kinase; NESG, 98.4 1.2E-06 4E-11 70.7 8.0 107 27-140 9-119 (191)
151 2px0_A Flagellar biosynthesis 98.3 7.6E-07 2.6E-11 76.6 6.7 37 26-62 105-141 (296)
152 1l8q_A Chromosomal replication 98.3 1.4E-06 4.6E-11 75.3 8.1 95 27-138 38-140 (324)
153 2w58_A DNAI, primosome compone 98.3 5.9E-07 2E-11 72.2 5.4 35 27-62 55-89 (202)
154 1iy2_A ATP-dependent metallopr 98.3 3.7E-07 1.3E-11 77.4 4.3 70 25-114 73-142 (278)
155 2qp9_X Vacuolar protein sortin 98.3 5E-07 1.7E-11 79.5 5.0 71 27-116 85-155 (355)
156 1ls1_A Signal recognition part 98.3 4.1E-07 1.4E-11 78.2 4.2 91 26-120 98-197 (295)
157 3cf2_A TER ATPase, transitiona 98.3 4E-07 1.4E-11 88.0 4.3 70 28-116 240-309 (806)
158 2j9r_A Thymidine kinase; TK1, 98.3 1.1E-06 3.9E-11 71.9 6.3 127 27-161 29-159 (214)
159 3t15_A Ribulose bisphosphate c 98.3 3E-07 1E-11 78.8 2.9 68 28-114 38-109 (293)
160 1w4r_A Thymidine kinase; type 98.3 3.6E-06 1.2E-10 67.9 9.1 127 25-161 19-148 (195)
161 3syl_A Protein CBBX; photosynt 98.3 3.7E-06 1.3E-10 71.8 9.7 37 26-62 67-106 (309)
162 2r62_A Cell division protease 98.3 2.2E-07 7.4E-12 78.0 1.7 70 28-116 46-115 (268)
163 3vfd_A Spastin; ATPase, microt 98.2 1.6E-06 5.6E-11 77.0 7.3 72 26-116 148-219 (389)
164 3e70_C DPA, signal recognition 98.2 8.1E-07 2.8E-11 77.5 5.0 35 27-62 130-164 (328)
165 3d8b_A Fidgetin-like protein 1 98.2 1.2E-06 4E-11 77.2 6.0 71 26-115 117-187 (357)
166 1jbk_A CLPB protein; beta barr 98.2 3.6E-06 1.2E-10 65.7 8.1 36 27-62 44-85 (195)
167 2orv_A Thymidine kinase; TP4A 98.2 6.6E-06 2.3E-10 68.1 9.8 127 26-161 19-147 (234)
168 2yhs_A FTSY, cell division pro 98.2 9E-07 3.1E-11 81.0 4.5 86 28-116 295-387 (503)
169 2vhj_A Ntpase P4, P4; non- hyd 98.2 3.1E-06 1E-10 73.5 7.6 32 27-62 124-155 (331)
170 1f2t_B RAD50 ABC-ATPase; DNA d 98.2 2.1E-06 7.2E-11 66.4 5.8 68 83-162 54-134 (148)
171 2dhr_A FTSH; AAA+ protein, hex 98.2 6.3E-07 2.1E-11 82.4 3.3 71 24-114 63-133 (499)
172 2qag_C Septin-7; cell cycle, c 98.2 2.7E-07 9.2E-12 83.1 0.8 35 18-52 20-57 (418)
173 2qby_A CDC6 homolog 1, cell di 98.1 7.4E-07 2.5E-11 77.9 2.8 37 26-62 45-83 (386)
174 1htw_A HI0065; nucleotide-bind 98.1 1.3E-06 4.6E-11 68.2 4.0 28 28-56 35-62 (158)
175 1d2n_A N-ethylmaleimide-sensit 98.1 1.3E-06 4.4E-11 73.6 3.6 71 27-115 65-135 (272)
176 4fcw_A Chaperone protein CLPB; 98.1 2.1E-06 7.2E-11 73.3 5.0 37 25-62 46-82 (311)
177 3cf2_A TER ATPase, transitiona 98.1 1.6E-06 5.3E-11 83.9 4.3 70 28-116 513-582 (806)
178 1znw_A Guanylate kinase, GMP k 98.1 1.7E-06 5.9E-11 70.0 3.8 30 22-51 15-45 (207)
179 3kta_A Chromosome segregation 98.1 1.6E-06 5.4E-11 68.4 3.3 44 10-53 7-53 (182)
180 1zu4_A FTSY; GTPase, signal re 98.1 1.2E-05 4E-10 69.9 8.9 35 27-62 106-140 (320)
181 2c9o_A RUVB-like 1; hexameric 98.1 1.8E-06 6E-11 78.5 3.6 71 27-115 64-137 (456)
182 2v1u_A Cell division control p 98.1 5.8E-06 2E-10 72.2 6.7 37 26-62 44-85 (387)
183 3kl4_A SRP54, signal recogniti 98.0 1.6E-06 5.5E-11 78.3 2.9 86 26-115 97-190 (433)
184 3cmu_A Protein RECA, recombina 98.0 1.5E-05 5.2E-10 83.2 10.4 106 25-140 731-870 (2050)
185 3c8u_A Fructokinase; YP_612366 98.0 2.7E-06 9.2E-11 68.9 3.7 36 26-62 22-57 (208)
186 3hu3_A Transitional endoplasmi 98.0 3.1E-06 1.1E-10 77.7 4.6 67 28-113 240-306 (489)
187 3a00_A Guanylate kinase, GMP k 98.0 2.2E-06 7.6E-11 68.2 3.1 29 28-56 3-31 (186)
188 2qgz_A Helicase loader, putati 98.0 4E-06 1.4E-10 72.4 4.8 36 26-62 152-188 (308)
189 1ypw_A Transitional endoplasmi 98.0 2.8E-06 9.4E-11 82.5 4.2 68 28-114 240-307 (806)
190 2p65_A Hypothetical protein PF 98.0 3.4E-06 1.2E-10 65.9 3.7 27 26-52 43-69 (187)
191 3tr0_A Guanylate kinase, GMP k 98.0 3.2E-06 1.1E-10 67.7 3.6 25 27-51 8-32 (205)
192 3m6a_A ATP-dependent protease 98.0 6.7E-06 2.3E-10 76.4 5.9 27 26-52 108-134 (543)
193 2chg_A Replication factor C sm 97.9 2.4E-05 8.4E-10 62.4 7.9 24 28-51 40-63 (226)
194 3dm5_A SRP54, signal recogniti 97.9 8.9E-06 3E-10 73.6 5.8 86 27-116 101-194 (443)
195 2qm8_A GTPase/ATPase; G protei 97.9 2.4E-05 8.3E-10 68.3 8.1 34 27-61 56-89 (337)
196 1s96_A Guanylate kinase, GMP k 97.9 5.8E-06 2E-10 67.9 3.7 29 24-52 13-42 (219)
197 3n70_A Transport activator; si 97.9 8.9E-06 3.1E-10 62.1 4.4 33 28-62 26-58 (145)
198 3pvs_A Replication-associated 97.9 4.2E-05 1.4E-09 69.4 9.5 25 27-51 51-75 (447)
199 3euj_A Chromosome partition pr 97.9 1E-05 3.5E-10 74.0 5.4 30 27-56 30-59 (483)
200 3u61_B DNA polymerase accessor 97.9 3.7E-05 1.3E-09 66.1 8.6 32 27-62 49-80 (324)
201 3pxi_A Negative regulator of g 97.9 2.4E-05 8.4E-10 75.3 8.2 73 24-116 519-591 (758)
202 1sxj_A Activator 1 95 kDa subu 97.9 1.3E-05 4.5E-10 73.8 5.9 33 26-62 77-109 (516)
203 1zp6_A Hypothetical protein AT 97.9 6.2E-06 2.1E-10 65.3 3.2 22 28-49 11-32 (191)
204 3uk6_A RUVB-like 2; hexameric 97.9 1.5E-05 5.1E-10 69.6 5.9 34 27-62 71-104 (368)
205 2qby_B CDC6 homolog 3, cell di 97.9 1.2E-05 4.2E-10 70.4 5.2 36 27-62 46-88 (384)
206 3pfi_A Holliday junction ATP-d 97.9 4.8E-05 1.6E-09 65.7 8.9 31 28-62 57-87 (338)
207 1kgd_A CASK, peripheral plasma 97.9 8.2E-06 2.8E-10 64.6 3.7 26 26-51 5-30 (180)
208 3uie_A Adenylyl-sulfate kinase 97.9 9.1E-06 3.1E-10 65.3 4.0 35 27-62 26-60 (200)
209 3asz_A Uridine kinase; cytidin 97.9 7.6E-06 2.6E-10 66.0 3.4 32 27-62 7-38 (211)
210 1um8_A ATP-dependent CLP prote 97.8 6.8E-05 2.3E-09 66.0 9.6 33 26-62 72-104 (376)
211 1lvg_A Guanylate kinase, GMP k 97.8 6.7E-06 2.3E-10 66.2 2.8 25 27-51 5-29 (198)
212 3e2i_A Thymidine kinase; Zn-bi 97.8 1.9E-05 6.3E-10 64.7 5.4 108 26-140 28-139 (219)
213 1g5t_A COB(I)alamin adenosyltr 97.8 3E-05 1E-09 62.5 6.6 39 23-62 25-63 (196)
214 1ypw_A Transitional endoplasmi 97.8 3.1E-06 1.1E-10 82.2 0.7 71 26-115 511-581 (806)
215 3co5_A Putative two-component 97.8 1.2E-05 4.1E-10 61.3 3.8 23 28-50 29-51 (143)
216 1qhl_A Protein (cell division 97.8 1E-06 3.5E-11 72.9 -2.5 30 27-56 28-57 (227)
217 1kag_A SKI, shikimate kinase I 97.8 9.6E-06 3.3E-10 63.2 3.2 25 27-51 5-29 (173)
218 1z6g_A Guanylate kinase; struc 97.8 9.2E-06 3.1E-10 66.4 3.1 25 27-51 24-48 (218)
219 1ofh_A ATP-dependent HSL prote 97.8 2.3E-05 7.9E-10 66.5 5.3 32 27-62 51-82 (310)
220 2bdt_A BH3686; alpha-beta prot 97.8 1.3E-05 4.4E-10 63.5 3.3 23 27-49 3-25 (189)
221 4eun_A Thermoresistant glucoki 97.8 1.2E-05 4.1E-10 64.6 3.2 24 27-50 30-53 (200)
222 1sq5_A Pantothenate kinase; P- 97.8 2E-05 6.8E-10 67.9 4.6 34 27-61 81-116 (308)
223 3tau_A Guanylate kinase, GMP k 97.7 1.5E-05 5.2E-10 64.5 3.5 27 26-52 8-34 (208)
224 1pui_A ENGB, probable GTP-bind 97.7 5.2E-06 1.8E-10 66.6 0.6 47 1-50 3-50 (210)
225 3te6_A Regulatory protein SIR3 97.7 1.7E-05 5.8E-10 68.8 3.8 37 26-62 45-87 (318)
226 2j41_A Guanylate kinase; GMP, 97.7 1.6E-05 5.6E-10 63.5 3.4 26 28-53 8-33 (207)
227 2obl_A ESCN; ATPase, hydrolase 97.7 7.9E-06 2.7E-10 71.8 1.6 31 23-53 67-98 (347)
228 3lnc_A Guanylate kinase, GMP k 97.7 1.1E-05 3.6E-10 66.3 2.1 25 27-51 28-53 (231)
229 1hqc_A RUVB; extended AAA-ATPa 97.7 5.3E-05 1.8E-09 64.8 6.6 32 27-62 39-70 (324)
230 1rz3_A Hypothetical protein rb 97.7 2.4E-05 8.4E-10 62.9 4.2 35 27-62 23-57 (201)
231 1qvr_A CLPB protein; coiled co 97.7 5.4E-05 1.8E-09 73.9 7.3 41 25-67 587-627 (854)
232 2bbw_A Adenylate kinase 4, AK4 97.7 1.7E-05 5.8E-10 65.8 3.2 22 27-48 28-49 (246)
233 3pxg_A Negative regulator of g 97.7 0.00012 4.2E-09 66.6 8.9 112 27-162 202-322 (468)
234 1r6b_X CLPA protein; AAA+, N-t 97.7 7.2E-05 2.5E-09 71.9 7.7 81 24-116 486-569 (758)
235 1f2t_A RAD50 ABC-ATPase; DNA d 97.7 2.5E-05 8.6E-10 60.1 3.7 27 24-50 21-47 (149)
236 2v3c_C SRP54, signal recogniti 97.7 3E-05 1E-09 70.0 4.6 35 27-62 100-134 (432)
237 1knq_A Gluconate kinase; ALFA/ 97.6 2.3E-05 7.9E-10 61.2 3.1 24 27-50 9-32 (175)
238 1ojl_A Transcriptional regulat 97.6 0.00023 7.8E-09 61.1 9.5 35 27-62 26-60 (304)
239 2yvu_A Probable adenylyl-sulfa 97.6 3.5E-05 1.2E-09 60.9 4.1 35 27-62 14-48 (186)
240 3hws_A ATP-dependent CLP prote 97.6 1.5E-05 5.2E-10 69.9 2.1 34 25-62 50-83 (363)
241 1j8m_F SRP54, signal recogniti 97.6 4.5E-05 1.5E-09 65.5 4.8 36 26-62 98-133 (297)
242 2pez_A Bifunctional 3'-phospho 97.6 3.9E-05 1.3E-09 60.2 4.1 35 27-62 6-40 (179)
243 3k1j_A LON protease, ATP-depen 97.6 4.3E-05 1.5E-09 71.8 4.9 26 28-53 62-87 (604)
244 2f1r_A Molybdopterin-guanine d 97.6 2.9E-05 9.8E-10 61.3 3.1 27 27-53 3-29 (171)
245 3kb2_A SPBC2 prophage-derived 97.6 3E-05 1E-09 59.9 3.2 24 28-51 3-26 (173)
246 1nks_A Adenylate kinase; therm 97.6 4.7E-05 1.6E-09 59.9 4.2 34 28-62 3-36 (194)
247 1qhx_A CPT, protein (chloramph 97.6 4.1E-05 1.4E-09 59.8 3.7 25 27-51 4-28 (178)
248 3tqc_A Pantothenate kinase; bi 97.6 5.4E-05 1.8E-09 65.7 4.5 35 28-62 94-129 (321)
249 1lw7_A Transcriptional regulat 97.6 3.6E-05 1.2E-09 67.7 3.4 29 26-54 170-198 (365)
250 2v9p_A Replication protein E1; 97.6 3.3E-05 1.1E-09 66.6 3.1 84 28-121 128-228 (305)
251 1nij_A Hypothetical protein YJ 97.5 3.3E-05 1.1E-09 66.8 2.9 25 26-50 4-28 (318)
252 1m7g_A Adenylylsulfate kinase; 97.5 4.4E-05 1.5E-09 61.7 3.4 35 28-62 27-61 (211)
253 1in4_A RUVB, holliday junction 97.5 3.4E-05 1.2E-09 67.0 2.8 25 27-51 52-76 (334)
254 2r2a_A Uncharacterized protein 97.5 0.00018 6.2E-09 58.1 6.9 23 28-50 7-29 (199)
255 3ney_A 55 kDa erythrocyte memb 97.5 5.3E-05 1.8E-09 61.2 3.6 26 26-51 19-44 (197)
256 1qvr_A CLPB protein; coiled co 97.5 0.00011 3.8E-09 71.6 6.3 77 28-117 193-276 (854)
257 1np6_A Molybdopterin-guanine d 97.5 7.3E-05 2.5E-09 59.1 4.2 36 26-62 6-41 (174)
258 2z0h_A DTMP kinase, thymidylat 97.5 8.7E-05 3E-09 58.7 4.5 34 28-62 2-35 (197)
259 1cke_A CK, MSSA, protein (cyti 97.5 5E-05 1.7E-09 61.7 3.2 24 27-50 6-29 (227)
260 3t61_A Gluconokinase; PSI-biol 97.5 4.3E-05 1.5E-09 61.2 2.7 24 27-50 19-42 (202)
261 3vaa_A Shikimate kinase, SK; s 97.5 5.3E-05 1.8E-09 60.7 3.2 25 27-51 26-50 (199)
262 1ly1_A Polynucleotide kinase; 97.5 6.2E-05 2.1E-09 58.6 3.4 21 28-48 4-24 (181)
263 1u0l_A Probable GTPase ENGC; p 97.5 4.5E-05 1.5E-09 65.5 2.7 30 27-56 170-199 (301)
264 1jjv_A Dephospho-COA kinase; P 97.5 5.5E-05 1.9E-09 60.7 3.1 21 28-48 4-24 (206)
265 1jr3_A DNA polymerase III subu 97.5 0.0004 1.4E-08 60.3 8.8 26 27-52 39-64 (373)
266 1xjc_A MOBB protein homolog; s 97.5 8.8E-05 3E-09 58.5 4.1 35 27-62 5-39 (169)
267 2if2_A Dephospho-COA kinase; a 97.5 6.9E-05 2.4E-09 59.9 3.5 30 28-62 3-32 (204)
268 2qor_A Guanylate kinase; phosp 97.4 6.2E-05 2.1E-09 60.5 3.2 25 27-51 13-37 (204)
269 2www_A Methylmalonic aciduria 97.4 8.1E-05 2.8E-09 65.2 4.1 36 26-62 74-109 (349)
270 2ffh_A Protein (FFH); SRP54, s 97.4 8.6E-05 2.9E-09 66.8 4.3 36 26-62 98-133 (425)
271 2pbr_A DTMP kinase, thymidylat 97.4 0.00011 3.7E-09 57.9 4.4 34 28-62 2-35 (195)
272 3qks_A DNA double-strand break 97.4 8E-05 2.7E-09 60.2 3.6 28 24-51 21-48 (203)
273 3lw7_A Adenylate kinase relate 97.4 7E-05 2.4E-09 57.7 3.1 20 27-46 2-21 (179)
274 1sxj_B Activator 1 37 kDa subu 97.4 0.00011 3.6E-09 62.6 4.5 34 29-62 45-79 (323)
275 3cr8_A Sulfate adenylyltranfer 97.4 8.3E-05 2.8E-09 69.1 4.0 35 28-62 371-405 (552)
276 1kht_A Adenylate kinase; phosp 97.4 7.9E-05 2.7E-09 58.6 3.2 25 28-52 5-29 (192)
277 2plr_A DTMP kinase, probable t 97.4 0.00013 4.6E-09 58.2 4.6 33 28-62 6-38 (213)
278 2ius_A DNA translocase FTSK; n 97.4 0.00058 2E-08 62.8 9.3 36 27-62 168-206 (512)
279 3pxi_A Negative regulator of g 97.4 0.00058 2E-08 65.7 9.7 112 27-162 202-322 (758)
280 3cm0_A Adenylate kinase; ATP-b 97.4 8.5E-05 2.9E-09 58.4 3.2 23 28-50 6-28 (186)
281 2ze6_A Isopentenyl transferase 97.4 8.1E-05 2.8E-09 62.2 3.3 24 28-51 3-26 (253)
282 2o5v_A DNA replication and rep 97.4 9.8E-05 3.3E-09 65.1 3.9 47 91-137 270-329 (359)
283 2qt1_A Nicotinamide riboside k 97.4 9E-05 3.1E-09 59.5 3.4 24 28-51 23-46 (207)
284 2yv5_A YJEQ protein; hydrolase 97.4 9.8E-05 3.4E-09 63.4 3.8 28 28-56 167-194 (302)
285 2rhm_A Putative kinase; P-loop 97.4 8.9E-05 3E-09 58.5 3.2 23 28-50 7-29 (193)
286 2ygr_A Uvrabc system protein A 97.4 0.00011 3.9E-09 72.1 4.4 57 84-140 519-584 (993)
287 1via_A Shikimate kinase; struc 97.4 8.9E-05 3.1E-09 57.9 3.0 24 28-51 6-29 (175)
288 2dpy_A FLII, flagellum-specifi 97.4 0.00011 3.6E-09 66.6 3.8 31 24-54 154-185 (438)
289 2xau_A PRE-mRNA-splicing facto 97.4 0.00022 7.6E-09 68.9 6.3 93 27-119 110-224 (773)
290 1oix_A RAS-related protein RAB 97.4 0.0001 3.6E-09 58.3 3.4 25 28-52 31-55 (191)
291 1w1w_A Structural maintenance 97.3 0.00011 3.7E-09 66.0 3.8 28 26-53 26-53 (430)
292 4e22_A Cytidylate kinase; P-lo 97.3 8.3E-05 2.8E-09 62.0 2.8 24 27-50 28-51 (252)
293 2rcn_A Probable GTPase ENGC; Y 97.3 9.9E-05 3.4E-09 65.0 3.4 29 27-55 216-245 (358)
294 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00025 8.5E-09 68.1 6.5 77 27-116 208-290 (758)
295 2jaq_A Deoxyguanosine kinase; 97.3 0.0001 3.5E-09 58.5 3.2 24 28-51 2-25 (205)
296 4eaq_A DTMP kinase, thymidylat 97.3 0.00019 6.6E-09 59.0 4.9 33 28-62 28-60 (229)
297 1gtv_A TMK, thymidylate kinase 97.3 5.8E-05 2E-09 60.6 1.6 34 28-62 2-35 (214)
298 2r6f_A Excinuclease ABC subuni 97.3 0.00012 4.1E-09 71.8 4.0 56 85-140 503-567 (972)
299 3trf_A Shikimate kinase, SK; a 97.3 0.00011 3.7E-09 57.7 3.1 25 27-51 6-30 (185)
300 3pih_A Uvrabc system protein A 97.3 0.00011 3.8E-09 71.9 3.8 57 84-140 462-527 (916)
301 2xxa_A Signal recognition part 97.3 0.00037 1.2E-08 62.9 6.8 36 27-62 101-136 (433)
302 2chq_A Replication factor C sm 97.3 0.00014 4.7E-09 61.8 3.8 23 28-50 40-62 (319)
303 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00016 5.6E-09 60.4 4.2 34 28-62 6-39 (260)
304 3auy_A DNA double-strand break 97.3 0.00016 5.5E-09 63.7 4.3 39 10-48 8-47 (371)
305 2f9l_A RAB11B, member RAS onco 97.3 0.00012 4E-09 58.3 3.1 23 28-50 7-29 (199)
306 4ad8_A DNA repair protein RECN 97.3 0.00014 4.8E-09 66.9 3.9 52 88-140 399-459 (517)
307 1tev_A UMP-CMP kinase; ploop, 97.3 0.00014 4.7E-09 57.2 3.3 23 28-50 5-27 (196)
308 2c95_A Adenylate kinase 1; tra 97.3 0.00015 5.2E-09 57.2 3.4 24 27-50 10-33 (196)
309 2bwj_A Adenylate kinase 5; pho 97.3 0.00015 5.2E-09 57.4 3.4 25 27-51 13-37 (199)
310 2p67_A LAO/AO transport system 97.2 0.00019 6.6E-09 62.6 4.1 35 27-62 57-91 (341)
311 3iij_A Coilin-interacting nucl 97.2 0.00014 4.7E-09 57.0 2.8 24 27-50 12-35 (180)
312 2vli_A Antibiotic resistance p 97.2 0.00012 4.3E-09 57.2 2.5 24 28-51 7-30 (183)
313 1t9h_A YLOQ, probable GTPase E 97.2 5.6E-05 1.9E-09 65.2 0.5 29 27-55 174-202 (307)
314 1gvn_B Zeta; postsegregational 97.2 0.00015 5.2E-09 61.7 3.2 24 28-51 35-58 (287)
315 1qf9_A UMP/CMP kinase, protein 97.2 0.00018 6.1E-09 56.5 3.3 23 28-50 8-30 (194)
316 2qag_B Septin-6, protein NEDD5 97.2 0.00013 4.3E-09 65.7 2.6 22 29-50 45-66 (427)
317 1nn5_A Similar to deoxythymidy 97.2 0.00027 9.1E-09 56.6 4.3 34 28-62 11-44 (215)
318 1y63_A LMAJ004144AAA protein; 97.2 0.00019 6.6E-09 56.7 3.4 24 27-50 11-34 (184)
319 2qnr_A Septin-2, protein NEDD5 97.2 0.00012 4.1E-09 62.8 2.3 25 29-53 21-46 (301)
320 1zd8_A GTP:AMP phosphotransfer 97.2 0.00022 7.4E-09 58.2 3.8 24 28-51 9-32 (227)
321 3dl0_A Adenylate kinase; phosp 97.2 0.00019 6.5E-09 57.9 3.4 22 29-50 3-24 (216)
322 2p5t_B PEZT; postsegregational 97.2 0.00014 4.8E-09 60.6 2.6 24 28-51 34-57 (253)
323 1e6c_A Shikimate kinase; phosp 97.2 0.00016 5.5E-09 56.0 2.8 24 28-51 4-27 (173)
324 2cdn_A Adenylate kinase; phosp 97.2 0.00019 6.5E-09 57.3 3.3 24 28-51 22-45 (201)
325 2vf7_A UVRA2, excinuclease ABC 97.2 0.00019 6.3E-09 69.8 3.7 54 87-140 380-442 (842)
326 2v54_A DTMP kinase, thymidylat 97.2 0.00021 7.3E-09 56.8 3.5 32 28-62 6-37 (204)
327 3fb4_A Adenylate kinase; psych 97.2 0.00019 6.4E-09 57.9 3.2 23 28-50 2-24 (216)
328 2vp4_A Deoxynucleoside kinase; 97.2 0.00011 3.9E-09 60.2 1.9 23 27-49 21-43 (230)
329 1ex7_A Guanylate kinase; subst 97.2 0.00021 7.1E-09 57.2 3.4 25 28-52 3-27 (186)
330 2wwf_A Thymidilate kinase, put 97.2 0.0002 6.8E-09 57.3 3.2 34 27-61 11-44 (212)
331 3sr0_A Adenylate kinase; phosp 97.2 0.0002 6.9E-09 58.1 3.2 23 28-50 2-24 (206)
332 1w5s_A Origin recognition comp 97.2 0.00023 7.9E-09 62.7 3.8 36 27-62 51-93 (412)
333 3umf_A Adenylate kinase; rossm 97.2 0.00021 7.3E-09 58.5 3.2 23 28-50 31-53 (217)
334 2iyv_A Shikimate kinase, SK; t 97.2 0.0002 6.9E-09 56.2 3.0 25 27-51 3-27 (184)
335 1ukz_A Uridylate kinase; trans 97.1 0.00026 8.8E-09 56.5 3.6 23 28-50 17-39 (203)
336 1zuh_A Shikimate kinase; alpha 97.1 0.00023 7.9E-09 55.1 3.2 25 27-51 8-32 (168)
337 2bjv_A PSP operon transcriptio 97.1 0.00035 1.2E-08 58.2 4.5 35 27-62 30-64 (265)
338 1zak_A Adenylate kinase; ATP:A 97.1 0.0002 6.9E-09 58.1 2.9 24 28-51 7-30 (222)
339 1aky_A Adenylate kinase; ATP:A 97.1 0.00024 8.1E-09 57.6 3.3 24 28-51 6-29 (220)
340 4ag6_A VIRB4 ATPase, type IV s 97.1 0.00033 1.1E-08 62.0 4.4 38 25-63 34-71 (392)
341 2pt5_A Shikimate kinase, SK; a 97.1 0.00025 8.6E-09 54.6 3.2 24 28-51 2-25 (168)
342 1odf_A YGR205W, hypothetical 3 97.1 0.00021 7.1E-09 61.1 2.9 27 27-53 32-58 (290)
343 1njg_A DNA polymerase III subu 97.1 0.00024 8.2E-09 57.1 3.1 26 27-52 46-71 (250)
344 1sxj_C Activator 1 40 kDa subu 97.1 0.00023 7.9E-09 61.7 2.8 25 29-53 49-73 (340)
345 3kta_B Chromosome segregation 97.1 0.00043 1.5E-08 54.6 4.2 57 83-139 61-127 (173)
346 3p32_A Probable GTPase RV1496/ 97.0 0.0004 1.4E-08 60.8 4.2 35 27-62 80-114 (355)
347 1svm_A Large T antigen; AAA+ f 97.0 0.0003 1E-08 62.4 3.3 23 28-50 171-193 (377)
348 1uf9_A TT1252 protein; P-loop, 97.0 0.00035 1.2E-08 55.4 3.5 23 27-49 9-31 (203)
349 2wji_A Ferrous iron transport 97.0 0.00027 9.1E-09 54.4 2.7 23 28-50 5-27 (165)
350 2xb4_A Adenylate kinase; ATP-b 97.0 0.00031 1E-08 57.3 3.2 23 28-50 2-24 (223)
351 1vht_A Dephospho-COA kinase; s 97.0 0.00036 1.2E-08 56.4 3.4 21 28-48 6-26 (218)
352 3ake_A Cytidylate kinase; CMP 97.0 0.00034 1.2E-08 55.7 3.2 24 28-51 4-27 (208)
353 1tue_A Replication protein E1; 97.0 0.00023 7.9E-09 57.8 2.2 24 28-51 60-83 (212)
354 3nwj_A ATSK2; P loop, shikimat 97.0 0.00027 9.4E-09 59.1 2.7 26 26-51 48-73 (250)
355 3tlx_A Adenylate kinase 2; str 97.0 0.00035 1.2E-08 57.8 3.3 23 28-50 31-53 (243)
356 3be4_A Adenylate kinase; malar 97.0 0.00037 1.3E-08 56.5 3.3 23 28-50 7-29 (217)
357 1e4v_A Adenylate kinase; trans 97.0 0.00034 1.2E-08 56.4 3.0 22 29-50 3-24 (214)
358 3r20_A Cytidylate kinase; stru 97.0 0.00037 1.3E-08 57.7 3.2 24 28-51 11-34 (233)
359 4edh_A DTMP kinase, thymidylat 97.0 0.00062 2.1E-08 55.5 4.3 34 28-62 8-41 (213)
360 1uj2_A Uridine-cytidine kinase 96.9 0.0005 1.7E-08 57.0 3.6 35 28-62 24-62 (252)
361 1ak2_A Adenylate kinase isoenz 96.9 0.00047 1.6E-08 56.5 3.3 24 28-51 18-41 (233)
362 2wjg_A FEOB, ferrous iron tran 96.9 0.00043 1.5E-08 53.9 2.9 23 27-49 8-30 (188)
363 1sxj_D Activator 1 41 kDa subu 96.9 0.0004 1.4E-08 59.9 2.9 35 28-62 60-96 (353)
364 2gj8_A MNME, tRNA modification 96.9 0.00046 1.6E-08 53.6 3.0 23 28-50 6-28 (172)
365 1yrb_A ATP(GTP)binding protein 96.9 0.0008 2.7E-08 55.6 4.3 35 26-62 14-48 (262)
366 2zej_A Dardarin, leucine-rich 96.9 0.00038 1.3E-08 54.5 2.2 22 28-49 4-25 (184)
367 1ega_A Protein (GTP-binding pr 96.9 0.00049 1.7E-08 58.9 3.0 26 25-50 7-32 (301)
368 1ltq_A Polynucleotide kinase; 96.8 0.00062 2.1E-08 57.7 3.4 23 28-50 4-26 (301)
369 2wsm_A Hydrogenase expression/ 96.8 0.00097 3.3E-08 53.6 4.4 34 27-62 31-64 (221)
370 2grj_A Dephospho-COA kinase; T 96.8 0.00068 2.3E-08 54.3 3.4 24 27-50 13-36 (192)
371 2r44_A Uncharacterized protein 96.8 0.00058 2E-08 58.7 3.1 25 27-51 47-71 (331)
372 1q3t_A Cytidylate kinase; nucl 96.8 0.00067 2.3E-08 55.7 3.2 23 28-50 18-40 (236)
373 3crm_A TRNA delta(2)-isopenten 96.8 0.00081 2.8E-08 58.3 3.6 32 27-62 6-37 (323)
374 1z2a_A RAS-related protein RAB 96.8 0.00075 2.6E-08 51.2 3.1 23 28-50 7-29 (168)
375 1kao_A RAP2A; GTP-binding prot 96.8 0.00078 2.7E-08 50.9 3.2 23 28-50 5-27 (167)
376 1c9k_A COBU, adenosylcobinamid 96.8 0.0011 3.6E-08 52.7 4.0 32 28-64 1-32 (180)
377 2dyk_A GTP-binding protein; GT 96.8 0.0008 2.7E-08 50.8 3.2 23 28-50 3-25 (161)
378 2ce2_X GTPase HRAS; signaling 96.7 0.00082 2.8E-08 50.6 3.2 23 28-50 5-27 (166)
379 3iev_A GTP-binding protein ERA 96.7 0.00073 2.5E-08 58.0 3.2 28 22-49 6-33 (308)
380 1a7j_A Phosphoribulokinase; tr 96.7 0.00046 1.6E-08 58.9 1.8 35 27-62 6-40 (290)
381 3e1s_A Exodeoxyribonuclease V, 96.7 0.001 3.5E-08 62.1 4.2 36 26-62 204-239 (574)
382 2ged_A SR-beta, signal recogni 96.7 0.00085 2.9E-08 52.5 3.2 24 27-50 49-72 (193)
383 4ad8_A DNA repair protein RECN 96.7 0.00042 1.4E-08 63.8 1.5 41 9-50 42-84 (517)
384 1g16_A RAS-related protein SEC 96.7 0.00092 3.2E-08 50.8 3.2 22 29-50 6-27 (170)
385 1u8z_A RAS-related protein RAL 96.7 0.00089 3.1E-08 50.6 3.1 23 28-50 6-28 (168)
386 1z0j_A RAB-22, RAS-related pro 96.7 0.00092 3.1E-08 50.8 3.2 23 28-50 8-30 (170)
387 3k53_A Ferrous iron transport 96.7 0.0008 2.7E-08 56.4 3.0 24 28-51 5-28 (271)
388 3lv8_A DTMP kinase, thymidylat 96.7 0.0014 4.7E-08 54.3 4.4 36 26-62 27-63 (236)
389 2erx_A GTP-binding protein DI- 96.7 0.00085 2.9E-08 51.0 2.9 22 28-49 5-26 (172)
390 3d3q_A TRNA delta(2)-isopenten 96.7 0.00097 3.3E-08 58.2 3.6 25 27-51 8-32 (340)
391 1ek0_A Protein (GTP-binding pr 96.7 0.00093 3.2E-08 50.7 3.1 23 28-50 5-27 (170)
392 1g41_A Heat shock protein HSLU 96.7 0.0009 3.1E-08 60.5 3.4 26 26-51 50-75 (444)
393 1g8p_A Magnesium-chelatase 38 96.7 0.00054 1.8E-08 59.1 1.9 25 27-51 46-70 (350)
394 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.00096 3.3E-08 51.2 3.2 23 28-50 9-31 (177)
395 2nzj_A GTP-binding protein REM 96.7 0.00082 2.8E-08 51.4 2.8 23 28-50 6-28 (175)
396 1z08_A RAS-related protein RAB 96.7 0.00098 3.4E-08 50.7 3.1 23 28-50 8-30 (170)
397 1ni3_A YCHF GTPase, YCHF GTP-b 96.6 0.00099 3.4E-08 59.3 3.4 22 27-48 21-42 (392)
398 1svi_A GTP-binding protein YSX 96.6 0.0018 6.2E-08 50.6 4.6 23 27-49 24-46 (195)
399 2f6r_A COA synthase, bifunctio 96.6 0.001 3.5E-08 56.3 3.3 21 28-48 77-97 (281)
400 1ky3_A GTP-binding protein YPT 96.6 0.0011 3.6E-08 51.1 3.2 23 28-50 10-32 (182)
401 1c1y_A RAS-related protein RAP 96.6 0.0011 3.7E-08 50.2 3.1 23 28-50 5-27 (167)
402 2hf9_A Probable hydrogenase ni 96.6 0.0017 5.8E-08 52.3 4.4 34 27-62 39-72 (226)
403 4b3f_X DNA-binding protein smu 96.6 0.0013 4.4E-08 62.2 4.1 36 26-62 205-240 (646)
404 3lxx_A GTPase IMAP family memb 96.6 0.00099 3.4E-08 54.6 2.9 25 28-52 31-55 (239)
405 3q85_A GTP-binding protein REM 96.6 0.00099 3.4E-08 50.7 2.7 22 29-50 5-26 (169)
406 1r2q_A RAS-related protein RAB 96.6 0.0012 4E-08 50.1 3.1 22 28-49 8-29 (170)
407 3a8t_A Adenylate isopentenyltr 96.6 0.0012 4E-08 57.6 3.4 25 27-51 41-65 (339)
408 2fn4_A P23, RAS-related protei 96.6 0.0012 4.3E-08 50.6 3.2 22 28-49 11-32 (181)
409 3q72_A GTP-binding protein RAD 96.6 0.00078 2.7E-08 51.2 2.0 21 29-49 5-25 (166)
410 2qmh_A HPR kinase/phosphorylas 96.6 0.0012 4.1E-08 53.4 3.1 24 27-50 35-58 (205)
411 2j37_W Signal recognition part 96.6 0.0014 4.9E-08 60.1 4.0 35 27-62 102-136 (504)
412 2lkc_A Translation initiation 96.6 0.0012 4.1E-08 50.7 2.9 25 26-50 8-32 (178)
413 3clv_A RAB5 protein, putative; 96.6 0.0013 4.4E-08 51.4 3.2 23 28-50 9-31 (208)
414 4tmk_A Protein (thymidylate ki 96.5 0.002 6.7E-08 52.5 4.3 35 27-62 4-39 (213)
415 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0013 4.5E-08 50.9 3.2 23 28-50 6-28 (189)
416 2y8e_A RAB-protein 6, GH09086P 96.5 0.0014 4.6E-08 50.3 3.2 23 28-50 16-38 (179)
417 1upt_A ARL1, ADP-ribosylation 96.5 0.0013 4.5E-08 50.1 3.1 22 28-49 9-30 (171)
418 3zvl_A Bifunctional polynucleo 96.5 0.0011 3.7E-08 59.4 2.9 23 28-50 260-282 (416)
419 3bc1_A RAS-related protein RAB 96.5 0.0013 4.5E-08 51.0 3.1 23 28-50 13-35 (195)
420 1nrj_B SR-beta, signal recogni 96.5 0.0013 4.4E-08 52.7 3.1 24 27-50 13-36 (218)
421 3foz_A TRNA delta(2)-isopenten 96.5 0.0015 5.2E-08 56.3 3.6 25 27-51 11-35 (316)
422 3pqc_A Probable GTP-binding pr 96.5 0.0012 4E-08 51.5 2.8 23 28-50 25-47 (195)
423 3exa_A TRNA delta(2)-isopenten 96.5 0.0015 5.1E-08 56.4 3.6 25 27-51 4-28 (322)
424 2hxs_A RAB-26, RAS-related pro 96.5 0.0014 4.7E-08 50.4 3.1 23 28-50 8-30 (178)
425 3v9p_A DTMP kinase, thymidylat 96.5 0.0012 4.1E-08 54.4 2.9 35 28-62 27-64 (227)
426 2cxx_A Probable GTP-binding pr 96.5 0.0011 3.9E-08 51.4 2.6 22 29-50 4-25 (190)
427 1z0f_A RAB14, member RAS oncog 96.5 0.0014 4.8E-08 50.2 3.1 23 28-50 17-39 (179)
428 2fna_A Conserved hypothetical 96.5 0.002 7E-08 55.1 4.4 32 27-62 31-62 (357)
429 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0013 4.5E-08 57.7 3.2 24 28-51 26-49 (359)
430 1iqp_A RFCS; clamp loader, ext 96.5 0.0012 4.2E-08 56.0 2.9 24 28-51 48-71 (327)
431 2bme_A RAB4A, RAS-related prot 96.5 0.0015 5.2E-08 50.6 3.2 23 28-50 12-34 (186)
432 1r8s_A ADP-ribosylation factor 96.5 0.0015 5.1E-08 49.4 3.1 22 29-50 3-24 (164)
433 2efe_B Small GTP-binding prote 96.5 0.0015 5.1E-08 50.3 3.1 23 28-50 14-36 (181)
434 3hjn_A DTMP kinase, thymidylat 96.5 0.0022 7.5E-08 51.4 4.2 36 28-64 2-37 (197)
435 2a9k_A RAS-related protein RAL 96.5 0.0015 5.1E-08 50.4 3.1 23 28-50 20-42 (187)
436 2oil_A CATX-8, RAS-related pro 96.5 0.0014 4.9E-08 51.2 3.1 23 28-50 27-49 (193)
437 1m2o_B GTP-binding protein SAR 96.5 0.0015 5.2E-08 51.4 3.2 25 25-49 22-46 (190)
438 3t1o_A Gliding protein MGLA; G 96.5 0.0018 6.1E-08 50.5 3.5 26 28-53 16-41 (198)
439 3tw8_B RAS-related protein RAB 96.5 0.001 3.4E-08 51.2 2.0 22 28-49 11-32 (181)
440 3vkw_A Replicase large subunit 96.5 0.0011 3.8E-08 59.8 2.5 24 25-48 160-183 (446)
441 1w1w_A Structural maintenance 96.5 0.0023 7.9E-08 57.3 4.6 55 85-139 332-397 (430)
442 3auy_A DNA double-strand break 96.5 0.0038 1.3E-07 54.9 5.9 56 85-140 279-347 (371)
443 1m7b_A RND3/RHOE small GTP-bin 96.4 0.0017 5.7E-08 50.6 3.2 23 28-50 9-31 (184)
444 2g6b_A RAS-related protein RAB 96.4 0.0017 5.7E-08 50.0 3.1 23 28-50 12-34 (180)
445 3con_A GTPase NRAS; structural 96.4 0.0016 5.6E-08 50.7 3.1 23 28-50 23-45 (190)
446 2h92_A Cytidylate kinase; ross 96.4 0.0017 5.9E-08 52.2 3.2 23 28-50 5-27 (219)
447 2fg5_A RAB-22B, RAS-related pr 96.4 0.0019 6.4E-08 50.7 3.2 23 28-50 25-47 (192)
448 1z6t_A APAF-1, apoptotic prote 96.4 0.0046 1.6E-07 57.2 6.4 23 27-49 148-170 (591)
449 3nbx_X ATPase RAVA; AAA+ ATPas 96.4 0.0021 7.1E-08 59.0 4.0 26 27-52 42-67 (500)
450 3kkq_A RAS-related protein M-R 96.4 0.0018 6.2E-08 50.0 3.1 23 28-50 20-42 (183)
451 1fzq_A ADP-ribosylation factor 96.4 0.0012 4.1E-08 51.5 2.0 23 27-49 17-39 (181)
452 2bov_A RAla, RAS-related prote 96.4 0.0018 6.2E-08 51.0 3.1 23 28-50 16-38 (206)
453 3tkl_A RAS-related protein RAB 96.4 0.0018 6.3E-08 50.5 3.1 23 28-50 18-40 (196)
454 1vg8_A RAS-related protein RAB 96.4 0.0019 6.4E-08 51.0 3.2 23 28-50 10-32 (207)
455 2gf9_A RAS-related protein RAB 96.4 0.0019 6.4E-08 50.5 3.1 23 28-50 24-46 (189)
456 2gf0_A GTP-binding protein DI- 96.4 0.002 6.9E-08 50.4 3.2 23 28-50 10-32 (199)
457 3t5g_A GTP-binding protein RHE 96.4 0.002 7E-08 49.7 3.2 23 27-49 7-29 (181)
458 3b1v_A Ferrous iron uptake tra 96.4 0.0016 5.5E-08 54.9 2.8 23 28-50 5-27 (272)
459 1mh1_A RAC1; GTP-binding, GTPa 96.4 0.002 6.7E-08 49.8 3.1 23 28-50 7-29 (186)
460 1wf3_A GTP-binding protein; GT 96.4 0.0018 6.1E-08 55.5 3.1 25 25-49 6-30 (301)
461 2ocp_A DGK, deoxyguanosine kin 96.3 0.0023 7.9E-08 52.5 3.7 24 28-51 4-27 (241)
462 3dz8_A RAS-related protein RAB 96.3 0.0021 7E-08 50.4 3.2 23 28-50 25-47 (191)
463 3ihw_A Centg3; RAS, centaurin, 96.3 0.002 6.9E-08 50.4 3.1 23 28-50 22-44 (184)
464 4hlc_A DTMP kinase, thymidylat 96.3 0.0033 1.1E-07 50.7 4.5 35 28-64 4-38 (205)
465 1z06_A RAS-related protein RAB 96.3 0.0021 7.2E-08 50.2 3.2 23 28-50 22-44 (189)
466 3upu_A ATP-dependent DNA helic 96.3 0.0028 9.5E-08 57.3 4.3 37 26-62 45-81 (459)
467 2fz4_A DNA repair protein RAD2 96.3 0.0055 1.9E-07 50.4 5.7 35 28-66 110-144 (237)
468 3oes_A GTPase rhebl1; small GT 96.3 0.0022 7.5E-08 50.7 3.2 23 28-50 26-48 (201)
469 3eph_A TRNA isopentenyltransfe 96.3 0.002 7E-08 57.4 3.3 26 26-51 2-27 (409)
470 1x3s_A RAS-related protein RAB 96.3 0.0022 7.4E-08 50.0 3.1 24 27-50 16-39 (195)
471 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0022 7.6E-08 50.8 3.2 23 28-50 10-32 (206)
472 2gk6_A Regulator of nonsense t 96.3 0.0029 9.9E-08 59.5 4.5 37 26-62 195-231 (624)
473 3iby_A Ferrous iron transport 96.3 0.002 6.7E-08 53.8 3.0 23 28-50 3-25 (256)
474 4dzz_A Plasmid partitioning pr 96.3 0.0062 2.1E-07 48.1 5.8 34 29-63 4-38 (206)
475 1zbd_A Rabphilin-3A; G protein 96.3 0.002 7E-08 50.8 2.9 23 28-50 10-32 (203)
476 2qen_A Walker-type ATPase; unk 96.3 0.0025 8.5E-08 54.4 3.6 24 27-50 32-55 (350)
477 1zd9_A ADP-ribosylation factor 96.3 0.0023 7.7E-08 50.1 3.1 23 28-50 24-46 (188)
478 1f6b_A SAR1; gtpases, N-termin 96.3 0.0013 4.3E-08 52.3 1.6 22 27-48 26-47 (198)
479 3bwd_D RAC-like GTP-binding pr 96.3 0.0023 7.9E-08 49.3 3.1 23 28-50 10-32 (182)
480 2atv_A RERG, RAS-like estrogen 96.3 0.0023 7.9E-08 50.3 3.2 23 28-50 30-52 (196)
481 2cjw_A GTP-binding protein GEM 96.3 0.0023 7.8E-08 50.5 3.1 22 28-49 8-29 (192)
482 2a5j_A RAS-related protein RAB 96.3 0.0023 7.9E-08 50.1 3.1 23 28-50 23-45 (191)
483 1ksh_A ARF-like protein 2; sma 96.3 0.0018 6.1E-08 50.3 2.4 24 27-50 19-42 (186)
484 1udx_A The GTP-binding protein 96.3 0.0012 4E-08 59.3 1.4 23 28-50 159-181 (416)
485 2dy1_A Elongation factor G; tr 96.2 0.012 4.2E-07 55.7 8.5 109 27-140 10-137 (665)
486 1moz_A ARL1, ADP-ribosylation 96.2 0.0015 5.3E-08 50.4 1.9 21 28-48 20-40 (183)
487 1u0j_A DNA replication protein 96.2 0.0026 8.8E-08 53.6 3.4 26 26-51 104-129 (267)
488 2p5s_A RAS and EF-hand domain 96.2 0.0024 8.2E-08 50.4 3.1 23 28-50 30-52 (199)
489 3cph_A RAS-related protein SEC 96.2 0.0024 8.3E-08 50.6 3.1 23 28-50 22-44 (213)
490 2iwr_A Centaurin gamma 1; ANK 96.2 0.0019 6.6E-08 49.7 2.4 23 28-50 9-31 (178)
491 1mky_A Probable GTP-binding pr 96.2 0.002 6.8E-08 58.0 2.8 23 28-50 182-204 (439)
492 3tqf_A HPR(Ser) kinase; transf 96.2 0.0027 9.1E-08 50.2 3.1 24 26-49 16-39 (181)
493 1zj6_A ADP-ribosylation factor 96.2 0.0024 8.3E-08 49.7 3.0 23 27-49 17-39 (187)
494 2qtf_A Protein HFLX, GTP-bindi 96.2 0.002 6.9E-08 56.7 2.7 24 28-51 181-204 (364)
495 3reg_A RHO-like small GTPase; 96.2 0.0026 8.7E-08 49.9 3.1 23 28-50 25-47 (194)
496 2ew1_A RAS-related protein RAB 96.2 0.0026 9E-08 50.7 3.2 23 28-50 28-50 (201)
497 2xtp_A GTPase IMAP family memb 96.2 0.0024 8.2E-08 52.9 3.0 24 27-50 23-46 (260)
498 3c5c_A RAS-like protein 12; GD 96.2 0.0027 9.2E-08 49.7 3.2 23 28-50 23-45 (187)
499 1gwn_A RHO-related GTP-binding 96.2 0.0027 9.2E-08 50.8 3.2 23 28-50 30-52 (205)
500 3lxw_A GTPase IMAP family memb 96.2 0.0023 7.8E-08 53.0 2.8 23 28-50 23-45 (247)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.77 E-value=2.4e-19 Score=153.70 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=85.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------eEEEEcCCccc-CCCCCCccc------ccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------RVVIVDTSNEI-GGDGDIPHS------AIG- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~v~~i~~~~e~-~~~~~~~~~------~~~- 79 (241)
+++|+||||||||||++.+++.+++..|. ++.|+.+..+. .....+... ..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~ 115 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL 115 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCC
Confidence 89999999999999999999999877432 12333321110 000000000 000
Q ss_pred -------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCc
Q 026207 80 -------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGV 130 (241)
Q Consensus 80 -------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~ 130 (241)
+ ......+|+|++|++.+++++.++|+++|+|||++++|+.... ... +.|.
T Consensus 116 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~ 195 (275)
T 3gfo_A 116 PEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195 (275)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCC
Confidence 0 0112346778899999999999999999999999999995432 333 4499
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+..+ ||+|++
T Consensus 196 tvi~vtHdl~--------~~~~~---~drv~~ 216 (275)
T 3gfo_A 196 TIIIATHDID--------IVPLY---CDNVFV 216 (275)
T ss_dssp EEEEEESCCS--------SGGGG---CSEEEE
T ss_pred EEEEEecCHH--------HHHHh---CCEEEE
Confidence 9999999997 67777 898887
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.76 E-value=9e-19 Score=154.98 Aligned_cols=121 Identities=20% Similarity=0.266 Sum_probs=84.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc-------C---CC-CCC-------ccc----cc--c----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-------G---GD-GDI-------PHS----AI--G---- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~-------~---~~-~~~-------~~~----~~--~---- 79 (241)
++.|+||||||||||+++|++..+++.|. ++++ +.++ . .. +.+ ++. ++ +
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~--I~i~-G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~ 108 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDSGE--ISLS-GKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG 108 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEEE--EEET-TEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcE--EEEC-CEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence 89999999999999999999999887433 3332 1111 0 00 000 000 00 0
Q ss_pred ---------c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------H-HHhC
Q 026207 80 ---------T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------S-IAER 128 (241)
Q Consensus 80 ---------~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~-~~~~ 128 (241)
+ .+....+|+|++|++.+++++..+|+++++|||++++|+.... . .++.
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~ 188 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 0 0112346778899999999999999999999999999994322 2 2456
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|+++|..+ .+..+ ||+|++
T Consensus 189 g~tvi~vTHd~~--------ea~~~---aDri~v 211 (359)
T 3fvq_A 189 GKSAVFVSHDRE--------EALQY---ADRIAV 211 (359)
T ss_dssp TCEEEEECCCHH--------HHHHH---CSEEEE
T ss_pred CCEEEEEeCCHH--------HHHHH---CCEEEE
Confidence 999999999986 55666 888877
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.76 E-value=5.9e-19 Score=156.35 Aligned_cols=151 Identities=13% Similarity=0.165 Sum_probs=96.4
Q ss_pred CccccceeeEEEEE--eEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIVKF--FYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~--~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-.-.. -..++..+ .+..| ++.|+||||||||||++++++..+++.|.
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 67788875322100 01123332 23343 89999999999999999999999877432
Q ss_pred --eEEEEcCCcccCCCCCCccc------c------------------ccc----hhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 --RVVIVDTSNEIGGDGDIPHS------A------------------IGT----ARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 --~v~~i~~~~e~~~~~~~~~~------~------------------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.++.+...+.....+... . ++. ......+|+|++|++.+++++.++|+
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~ 183 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 183 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCS
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 23333322111110000000 0 000 01123467788999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|++|||++++|+.... .. .+.|.++|+++|..+ .+..+ ||+|++
T Consensus 184 lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~--------~~~~~---aDrv~v 236 (366)
T 3tui_C 184 VLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD--------VVKRI---CDCVAV 236 (366)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH--------HHHHH---CSEEEE
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 99999999999995432 33 345999999999987 55666 888776
No 4
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=3.1e-19 Score=151.49 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=95.6
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----------------eEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----------------RVVI 60 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----------------~v~~ 60 (241)
||+++|+..-. .-+.++..+ .+..| +++|+||||||||||++.|++.+++..|. ++.|
T Consensus 15 ~l~i~~l~~~y--~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 15 AVVVKDLRKRI--GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred eEEEEEEEEEE--CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 56777775211 011233332 23344 89999999999999999999999876332 2334
Q ss_pred EcCCcccCCCCCCccc------ccc--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 61 VDTSNEIGGDGDIPHS------AIG--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 61 i~~~~e~~~~~~~~~~------~~~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
+.+...+.....+... ..+ . . .....+|+|++|+..+++++..+|+++++||
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4332221111000000 000 0 0 1123467788999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|++++|+.... ...+.|.++|+++|..+ .+..+ ||++++
T Consensus 173 Pts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~--------~~~~~---~d~v~~ 218 (256)
T 1vpl_A 173 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNML--------EVEFL---CDRIAL 218 (256)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH--------HHTTT---CSEEEE
T ss_pred CccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--------HHHHH---CCEEEE
Confidence 99999995432 33446899999999876 55666 888877
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.75 E-value=3.1e-19 Score=152.31 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=84.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCCCcc------------cc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGDIPH------------SA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~~~~------------~~ 77 (241)
++.|+||||||||||++.+++.++++.|. .+.++.+...+.....+.. ..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 118 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQD 118 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTH
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHH
Confidence 79999999999999999999999887543 1223322211110000000 00
Q ss_pred ----------ccc----hhhcCCCCCcccHHHHHHHHHhc------CCcEEEEcCCCCHHhHHHHH-------HHH-hCC
Q 026207 78 ----------IGT----ARRMQVPEPSLQHKVMIEAVENH------MPEVIIVDEIGTEAEAHACR-------SIA-ERG 129 (241)
Q Consensus 78 ----------~~~----~~~~~~~~~~~~~~~~~~~~l~~------~p~vlilDE~~~~~d~~~~~-------~~~-~~g 129 (241)
.+. ......+|+|++|++.+++++.+ +|+++++|||++++|+.... ... +.|
T Consensus 119 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~ 198 (266)
T 4g1u_C 119 RQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198 (266)
T ss_dssp HHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 000 01123467788999999999999 99999999999999994332 333 346
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+++|+++|..+ .+..+ ||+|++
T Consensus 199 ~tvi~vtHdl~--------~~~~~---~d~v~v 220 (266)
T 4g1u_C 199 LAVCCVLHDLN--------LAALY---ADRIML 220 (266)
T ss_dssp EEEEEECSCHH--------HHHHH---CSEEEE
T ss_pred CEEEEEEcCHH--------HHHHh---CCEEEE
Confidence 79999999886 55666 888887
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.74 E-value=2.3e-18 Score=153.41 Aligned_cols=124 Identities=20% Similarity=0.211 Sum_probs=85.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCccc-ccc-----------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHS-AIG----------- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~-~~~----------- 79 (241)
++.|+||||||||||+++|+|..+++.|. ++.++.+...+.....+... ..+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~ 110 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVI 110 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHH
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 89999999999999999999999887432 13333322211110000000 000
Q ss_pred --c--------------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEe
Q 026207 80 --T--------------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGT 135 (241)
Q Consensus 80 --~--------------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t 135 (241)
+ .+....+|++++|++.+++++..+|+++++|||++.+|+.... .. .+.|.++|.+
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~v 190 (381)
T 3rlf_A 111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190 (381)
T ss_dssp HHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 0112346778899999999999999999999999999984322 33 3449999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|..+ .+..+ ||+|++
T Consensus 191 THd~~--------ea~~~---aDri~v 206 (381)
T 3rlf_A 191 THDQV--------EAMTL---ADKIVV 206 (381)
T ss_dssp CSCHH--------HHHHH---CSEEEE
T ss_pred ECCHH--------HHHHh---CCEEEE
Confidence 99886 55666 888877
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.73 E-value=1.9e-18 Score=147.14 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=94.0
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------e
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------R 57 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------~ 57 (241)
||+++|+..-. .-+.++..+ .+..| ++.|+||||||||||++.+++.++++.|. +
T Consensus 24 ~l~i~~l~~~y--~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEE--CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 46777775211 001233332 23333 89999999999999999999999876332 1
Q ss_pred EEEEcCCcccCCCCCCccc-cc------c--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 58 VVIVDTSNEIGGDGDIPHS-AI------G--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 58 v~~i~~~~e~~~~~~~~~~-~~------~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
+.|+.+...+.....+... .. + . . .....+|+|++|++.+++++..+|+++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ll 181 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIM 181 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEE
Confidence 3333322111110000000 00 0 0 0 012235678899999999999999999
Q ss_pred EEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 109 IVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 109 ilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||+|++
T Consensus 182 lLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--------~~~~~---~d~v~~ 231 (263)
T 2olj_A 182 LFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG--------FAREV---GDRVLF 231 (263)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------HHHHH---CSEEEE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--------HHHHh---CCEEEE
Confidence 999999999995432 33445899999999876 45556 888876
No 8
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.73 E-value=4.2e-18 Score=151.60 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=83.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCC-------------Ccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGD-------------IPHSA- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~-------------~~~~~- 77 (241)
++.|+||||||||||+++|++..+++.|. ++.|+.+...+..... .+...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~ 118 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI 118 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHH
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH
Confidence 89999999999999999999999877332 1333332211110000 00000
Q ss_pred ----------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEe
Q 026207 78 ----------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGT 135 (241)
Q Consensus 78 ----------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t 135 (241)
++. .+....+|+|++|++.+++++..+|+++++|||++++|+.... .. .+.|.++|.+
T Consensus 119 ~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v 198 (372)
T 1v43_A 119 DKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYV 198 (372)
T ss_dssp HHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 000 0123447889999999999999999999999999999994332 32 2348999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ ||+|++
T Consensus 199 THd~~--------~a~~~---adri~v 214 (372)
T 1v43_A 199 THDQV--------EAMTM---GDRIAV 214 (372)
T ss_dssp ESCHH--------HHHHH---CSEEEE
T ss_pred eCCHH--------HHHHh---CCEEEE
Confidence 99876 45556 787776
No 9
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.72 E-value=9.6e-18 Score=142.06 Aligned_cols=128 Identities=12% Similarity=0.102 Sum_probs=88.8
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCC-----CeEEEEcCCcccCCCCCC---------c--------ccc---
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQ-----KRVVIVDTSNEIGGDGDI---------P--------HSA--- 77 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g-----~~v~~i~~~~e~~~~~~~---------~--------~~~--- 77 (241)
+..| +++|+||||||||||++.+++.++++.| .++.|+.+...+.....+ . ...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ 107 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ 107 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH
Confidence 3344 8999999999999999999999987744 245677644332211000 0 000
Q ss_pred --------ccc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC-CcEEEEeec
Q 026207 78 --------IGT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER-GVMLIGTAH 137 (241)
Q Consensus 78 --------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~-g~~vi~t~H 137 (241)
.+. ......+|+|++|+..+++++..+|+++++|||++++|+.... ...+. |.++|+++|
T Consensus 108 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 108 VAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp HHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEES
T ss_pred HHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 000 0112346778899999999999999999999999999995432 33334 899999999
Q ss_pred CCChhhhhcCCccccccccccEEEe
Q 026207 138 GEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 138 ~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
..+ .+..+ ||++++
T Consensus 188 d~~--------~~~~~---~d~v~~ 201 (253)
T 2nq2_C 188 QPN--------QVVAI---ANKTLL 201 (253)
T ss_dssp CHH--------HHHHH---CSEEEE
T ss_pred CHH--------HHHHh---CCEEEE
Confidence 876 45556 788776
No 10
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.72 E-value=2.8e-18 Score=144.32 Aligned_cols=143 Identities=15% Similarity=0.146 Sum_probs=93.6
Q ss_pred CccccceeeEEEEEeEEeeCcc---eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC------CC-
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN---KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG------GD- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~---~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~------~~- 70 (241)
|++++|+..-. - ..+... -.. .++.|+||||||||||++.+++.++++.|. ++++ +.++. ..
T Consensus 1 ml~~~~l~~~y---~-~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~--i~~~-g~~~~~~~~~~~~i 72 (240)
T 2onk_A 1 MFLKVRAEKRL---G-NFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE--VRLN-GADITPLPPERRGI 72 (240)
T ss_dssp CCEEEEEEEEE---T-TEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE--EEET-TEECTTSCTTTSCC
T ss_pred CEEEEEEEEEe---C-CEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE--EEEC-CEECCcCchhhCcE
Confidence 78888886321 1 112222 123 799999999999999999999999877443 3343 21110 00
Q ss_pred CCCccc-----------c--c-----c------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcC
Q 026207 71 GDIPHS-----------A--I-----G------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDE 112 (241)
Q Consensus 71 ~~~~~~-----------~--~-----~------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE 112 (241)
+.+++. . . + .+ .....+|+|++|+..+++++.++|+++++||
T Consensus 73 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDE 152 (240)
T 2onk_A 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDE 152 (240)
T ss_dssp BCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEES
T ss_pred EEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 111110 0 0 0 00 0122356678999999999999999999999
Q ss_pred CCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 113 IGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 113 ~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|++++|+.... ... +.|.++|+++|..+ .+..+ ||++++
T Consensus 153 Pts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~--------~~~~~---~d~i~~ 199 (240)
T 2onk_A 153 PLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI--------EAAML---ADEVAV 199 (240)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH--------HHHHH---CSEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999995432 332 34899999999875 45556 888876
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.72 E-value=7.5e-18 Score=149.27 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=94.0
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIV 61 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i 61 (241)
||+++|+..-. .-..++... .+..| ++.|.||||||||||+++|++..+++.|. ++.|+
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEE--CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 47777775211 001223332 23333 89999999999999999999999877332 23344
Q ss_pred cCCcccCCCCCCccc-cc-----c--------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCC
Q 026207 62 DTSNEIGGDGDIPHS-AI-----G--------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEI 113 (241)
Q Consensus 62 ~~~~e~~~~~~~~~~-~~-----~--------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~ 113 (241)
.+...+.....+... .. + +. +....+|+|++|++.+++++..+|+++++|||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP 160 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEP 160 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 322211110000000 00 0 00 11234677889999999999999999999999
Q ss_pred CCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 114 GTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 114 ~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|+.... .. .+.|.++|.++|..+ .+..+ ||+|++
T Consensus 161 ~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~--------~~~~~---adri~v 206 (359)
T 2yyz_A 161 LSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA--------EAMTM---ASRIAV 206 (359)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH--------HHHHH---CSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--------HHHHh---CCEEEE
Confidence 9999995332 22 234899999999876 45556 787776
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.72 E-value=1e-17 Score=139.39 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=92.5
Q ss_pred CccccceeeEEEEEe-EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC--------------------
Q 026207 1 MLRLRNVFLLIVKFF-YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~-~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------- 56 (241)
||+++|+.. ++- +.++..+ .+..| ++.|+||||||||||++.+++.++++.|.
T Consensus 4 ~l~~~~l~~---~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKK---VIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEE---EETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEE---EECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 467777752 111 1233332 23344 89999999999999999999999876332
Q ss_pred --eEEEEcCCcccCCCCCCccc-cc-----c--------c----h----------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 --RVVIVDTSNEIGGDGDIPHS-AI-----G--------T----A----------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 --~v~~i~~~~e~~~~~~~~~~-~~-----~--------~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.+.|+.+...+.....+... .. + . . .....+|+|++|+..+++++.++|+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPI 160 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 13344322211110000000 00 0 0 0 0122356678999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... ...+.|.++|+++|..+ .+ .+ ||++++
T Consensus 161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--------~~-~~---~d~v~~ 211 (224)
T 2pcj_A 161 LLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE--------LA-EL---THRTLE 211 (224)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------HH-TT---SSEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH--------HH-Hh---CCEEEE
Confidence 99999999999995432 33345899999999864 22 45 788776
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.72 E-value=1.5e-17 Score=141.14 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=54.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++|++.+++++.++|+++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~--------~~~~~---~d 221 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD--------IVLNY---ID 221 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS--------TTGGG---CS
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH--------HHHHh---CC
Confidence 35667899999999999999999999999999995432 33445899999999987 66677 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 222 ~v~~ 225 (257)
T 1g6h_A 222 HLYV 225 (257)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8877
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.72 E-value=5.3e-18 Score=144.34 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=53.8
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVD 158 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d 158 (241)
.+|+|++|++.+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~--------~~~~~---~d 221 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG--------FARHV---SS 221 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH--------HHHHH---CS
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHHHh---CC
Confidence 35678899999999999999999999999999995432 33445899999999876 45556 88
Q ss_pred EEEe
Q 026207 159 TVTL 162 (241)
Q Consensus 159 ~V~~ 162 (241)
+|++
T Consensus 222 ~v~~ 225 (262)
T 1b0u_A 222 HVIF 225 (262)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 15
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.71 E-value=2e-17 Score=138.60 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=96.0
Q ss_pred CccccceeeEEEEE--eEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------
Q 026207 1 MLRLRNVFLLIVKF--FYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~--~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------- 56 (241)
||+++|+..-.-.. -..++..+ .+..| ++.|+||||||||||++.+++.+++..|.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 78888886322100 01234433 23333 89999999999999999999999877332
Q ss_pred ---eEEEEcCCcccCCCCCC----------------ccc-----------cccc-----hhhcCCCCCcccHHHHHHHHH
Q 026207 57 ---RVVIVDTSNEIGGDGDI----------------PHS-----------AIGT-----ARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 57 ---~v~~i~~~~e~~~~~~~----------------~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~~l 101 (241)
.+.|+.+...+.....+ ... ..+. ......+|+|++|+..+++++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 24555433222111000 000 0000 011234567889999999999
Q ss_pred hcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 102 NHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|+++++|||++++|+.... ... +.|.++|+++|..+ . ..+ ||+|++
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--------~-~~~---~d~i~~ 217 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--------V-ARF---GERIIY 217 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--------H-HTT---SSEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--------H-HHh---CCEEEE
Confidence 9999999999999999995432 333 34999999999874 2 234 788877
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.71 E-value=1.1e-17 Score=148.48 Aligned_cols=124 Identities=21% Similarity=0.191 Sum_probs=83.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCccc-cc-----c------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHS-AI-----G------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~-~~-----~------ 79 (241)
++.|+||||||||||+++|++..+++.|. ++.|+.+...+.....+... .. +
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~ 110 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEI 110 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH
Confidence 89999999999999999999999877332 23333322211110000000 00 0
Q ss_pred --c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEe
Q 026207 80 --T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGT 135 (241)
Q Consensus 80 --~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t 135 (241)
+ . +....+|+|++|++.+++++..+|+++++|||++++|+.... .. .+.|.++|.+
T Consensus 111 ~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~v 190 (362)
T 2it1_A 111 DKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV 190 (362)
T ss_dssp HHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 0 012336678899999999999999999999999999994332 32 2348999999
Q ss_pred ecCCChhhhhcCCccccccccccEEEe
Q 026207 136 AHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 136 ~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|... .+..+ ||+|++
T Consensus 191 THd~~--------~a~~~---adri~v 206 (362)
T 2it1_A 191 THDQA--------EALAM---ADRIAV 206 (362)
T ss_dssp ESCHH--------HHHHH---CSEEEE
T ss_pred CCCHH--------HHHHh---CCEEEE
Confidence 99876 45556 788776
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.71 E-value=6.7e-18 Score=149.41 Aligned_cols=124 Identities=19% Similarity=0.162 Sum_probs=82.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------eEEEEcCCcccCCCCCCccc-ccc------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK---------------------RVVIVDTSNEIGGDGDIPHS-AIG------ 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~---------------------~v~~i~~~~e~~~~~~~~~~-~~~------ 79 (241)
++.|+||||||||||+++|+|..+++.|. ++.|+.+...+.....+... ..+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~ 112 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC
Confidence 89999999999999999999999877332 12233221111100000000 000
Q ss_pred -------ch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHH-HhCCc
Q 026207 80 -------TA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSI-AERGV 130 (241)
Q Consensus 80 -------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~-~~~g~ 130 (241)
+. +....+|+|++|++++++++..+|+++++|||++++|+... ... .+.|.
T Consensus 113 ~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~ 192 (353)
T 1oxx_K 113 SKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV 192 (353)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 00 01234677889999999999999999999999999998322 233 33489
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|+++|..+ .+..+ ||+|++
T Consensus 193 tvi~vTHd~~--------~~~~~---adri~v 213 (353)
T 1oxx_K 193 TLLVVSHDPA--------DIFAI---ADRVGV 213 (353)
T ss_dssp EEEEEESCHH--------HHHHH---CSEEEE
T ss_pred EEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9999999876 45556 787776
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.71 E-value=1.5e-17 Score=139.82 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=86.7
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-------------------eEEEEcCCcccCCC-C-----------
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------------RVVIVDTSNEIGGD-G----------- 71 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------------~v~~i~~~~e~~~~-~----------- 71 (241)
+..| ++.|.||||||||||++.+++.++++.|. ++.|+.+...+... .
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~ 108 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN 108 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhc
Confidence 4444 89999999999999999999999876321 14455432211110 0
Q ss_pred CCcccc-----------c-cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhC
Q 026207 72 DIPHSA-----------I-GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAER 128 (241)
Q Consensus 72 ~~~~~~-----------~-~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~ 128 (241)
...... + +.. .....+|+|++|+..+++++.++|+++++|||++++|+.... ...+.
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 188 (240)
T 1ji0_A 109 RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188 (240)
T ss_dssp CCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 000000 0 000 112335678899999999999999999999999999995432 33346
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|+++|..+ .+..+ ||+|++
T Consensus 189 g~tvi~vtHd~~--------~~~~~---~d~v~~ 211 (240)
T 1ji0_A 189 GTTILLVEQNAL--------GALKV---AHYGYV 211 (240)
T ss_dssp TCCEEEEESCHH--------HHHHH---CSEEEE
T ss_pred CCEEEEEecCHH--------HHHHh---CCEEEE
Confidence 899999999875 45556 788776
No 19
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.70 E-value=5.5e-17 Score=143.77 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=88.9
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
...++++|+||||||||||++++++.+++..+.++++++++.|+..... .....+.........+...+++++++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-----~~~v~q~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-----KCLVNQREVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-----SSEEEEEEBTTTBSCHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-----ccceeeeeeccccCCHHHHHHHHhhh
Confidence 3556999999999999999999999998775678888887777643211 01111223333456788899999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChh
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 142 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~ 142 (241)
+|++|++|||++......+..+.++|+++++|+|.++..
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 999999999998777677677888999999999999833
No 20
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.70 E-value=9.4e-18 Score=148.38 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=83.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEEcCCcccCCCCCCccccc-------c-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIVDTSNEIGGDGDIPHSAI-------G----- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i~~~~e~~~~~~~~~~~~-------~----- 79 (241)
++.|+||||||||||+++|++..+++.|. ++.|+.+...+.....+. .++ +
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~-eni~~~l~~~~~~~~~ 121 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY-DNVSFGLREKRVPKDE 121 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH-HHHHHHHHHTTCCHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH-HHHHHHHHHcCCCHHH
Confidence 89999999999999999999999877432 122332211111000000 000 0
Q ss_pred ---c----h----------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEE
Q 026207 80 ---T----A----------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIG 134 (241)
Q Consensus 80 ---~----~----------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~ 134 (241)
+ . +....+|+|++|++.+++++..+|+++++|||++++|+.... .. .+.|.++|+
T Consensus 122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0 0 112346778899999999999999999999999999994332 22 234899999
Q ss_pred eecCCChhhhhcCCccccccccccEEEe
Q 026207 135 TAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 135 t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|..+ .+..+ ||+|++
T Consensus 202 vTHd~~--------~a~~~---adri~v 218 (355)
T 1z47_A 202 VTHDQE--------EALEV---ADRVLV 218 (355)
T ss_dssp ECSCHH--------HHHHH---CSEEEE
T ss_pred ECCCHH--------HHHHh---CCEEEE
Confidence 999876 45556 777776
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.70 E-value=1.3e-17 Score=147.25 Aligned_cols=148 Identities=12% Similarity=0.148 Sum_probs=94.1
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC----------------eEEEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK----------------RVVIV 61 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~----------------~v~~i 61 (241)
||+++|+..- +-..++... .+..| ++.|+||||||||||+++|++..+++.|. ++.|+
T Consensus 1 ml~~~~l~~~---y~~~~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRK---WKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEE---CSSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEE---ECCEEEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 7888888521 110023322 23333 89999999999999999999999877433 12233
Q ss_pred cCCcccCCCCCCccc-cc----------cch--------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCH
Q 026207 62 DTSNEIGGDGDIPHS-AI----------GTA--------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 62 ~~~~e~~~~~~~~~~-~~----------~~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~ 116 (241)
.+...+.....+... .. .+. +....+|+|++|++.+++++..+|+++++|||+++
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 222111110000000 00 000 01223567889999999999999999999999999
Q ss_pred HhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 117 AEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 117 ~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+.... .. .+.|.++|.++|... .+..+ ||+|++
T Consensus 158 LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~--------~~~~~---adri~v 200 (348)
T 3d31_A 158 LDPRTQENAREMLSVLHKKNKLTVLHITHDQT--------EARIM---ADRIAV 200 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH--------HHHHH---CSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 9994332 33 345899999999876 45556 788776
No 22
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.70 E-value=1.3e-17 Score=148.57 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=92.6
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------------
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------------- 56 (241)
||+++|+..-. .-..++... .+..| ++.|+||||||||||+++|++..+++.|.
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVF--GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEE--CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 37777775211 001223322 23333 89999999999999999999999877432
Q ss_pred -eEEEEcCCcccCCCCCCccccc-------c--------ch--------------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 -RVVIVDTSNEIGGDGDIPHSAI-------G--------TA--------------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 -~v~~i~~~~e~~~~~~~~~~~~-------~--------~~--------------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.|+.+...+.....+ ..++ + +. +....+|+|++|++.+++++..+|+
T Consensus 81 r~ig~v~Q~~~l~~~ltv-~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTV-YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp SSEEEECSCCCCCTTSCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred CCEEEEeCCCccCCCCCH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 12222211111100000 0000 0 00 0123467788999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... .. .+.|.++|.++|... .+..+ ||+|++
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~--------~a~~~---adri~v 212 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV--------EAMTM---GDRIAV 212 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH--------HHHHH---CSEEEE
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH--------HHHHh---CCEEEE
Confidence 99999999999994332 32 234899999999876 45556 788776
No 23
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.70 E-value=1.2e-17 Score=138.06 Aligned_cols=124 Identities=11% Similarity=0.133 Sum_probs=84.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-------------eEEEEcCCcccCCCCCCc------------ccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-------------RVVIVDTSNEIGGDGDIP------------HSA----- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-------------~v~~i~~~~e~~~~~~~~------------~~~----- 77 (241)
+++|+||||||||||++.+++.+++..|. .+.|+.+...+.....+. ...
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~ 116 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM 116 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHH
Confidence 79999999999999999999999876332 234554322221110000 000
Q ss_pred -----ccc---hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHH-------HHHHHhCCcEEEEeecCCChh
Q 026207 78 -----IGT---ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEWLE 142 (241)
Q Consensus 78 -----~~~---~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~-------~~~~~~~g~~vi~t~H~~~~~ 142 (241)
++. ......+|+|++|+..+++++..+|+++++|||++++|+.. +....+.|.++|+++|..+
T Consensus 117 ~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-- 194 (214)
T 1sgw_A 117 DALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-- 194 (214)
T ss_dssp HHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC--
T ss_pred HHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--
Confidence 000 01122356688999999999999999999999999999932 2233445889999999987
Q ss_pred hhhcCCccccccccccEEEe
Q 026207 143 NIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 143 ~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+..+ +|+|++
T Consensus 195 ------~~~~~---~d~v~~ 205 (214)
T 1sgw_A 195 ------SYCDV---NENLHK 205 (214)
T ss_dssp ------TTSSE---EEEGGG
T ss_pred ------HHHHh---CCEEEE
Confidence 66667 777765
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.70 E-value=5.3e-17 Score=138.45 Aligned_cols=148 Identities=19% Similarity=0.151 Sum_probs=96.9
Q ss_pred CccccceeeEEEEEe------EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC---------------
Q 026207 1 MLRLRNVFLLIVKFF------YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK--------------- 56 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~------~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~--------------- 56 (241)
||+++|+.. ++- +.++... .+..| +++|+||||||||||++.+++.+++..|.
T Consensus 2 ~l~~~~l~~---~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSH---IFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEE---EESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEE---EecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhh
Confidence 678888852 221 1234333 23344 89999999999999999999999876322
Q ss_pred eEEEEcCCc-ccCCCC-----------C-Ccccc-----------ccch------hhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 57 RVVIVDTSN-EIGGDG-----------D-IPHSA-----------IGTA------RRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 57 ~v~~i~~~~-e~~~~~-----------~-~~~~~-----------~~~~------~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
++.|+.+.. ...... . ..... .+.. .....+|+|++|+..+++++.++|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 244554331 110000 0 00000 0000 0122356788999999999999999
Q ss_pred EEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 107 VIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++++|||++++|+.... ...+.|.++|+++|..+ .+..+ ||++++
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~--------~~~~~---~d~v~~ 210 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE--------TVINH---VDRVVV 210 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT--------TTGGG---CSEEEE
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999999995432 33345899999999987 56667 888877
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.69 E-value=1.9e-17 Score=142.19 Aligned_cols=66 Identities=21% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEE--EEeecCCChhhhhcCCcccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVML--IGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~v--i~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
.+|+|++|++.+++++..+|+++++|||++++|+.... ...+.|.++ |+++|..+ .+..+
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~--------~~~~~--- 229 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE--------EITAN--- 229 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG--------GCCTT---
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH--------HHHHh---
Confidence 35667899999999999999999999999999995432 333348888 99999986 56666
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||+|++
T Consensus 230 ~d~v~~ 235 (279)
T 2ihy_A 230 FSKILL 235 (279)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888877
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.68 E-value=1.5e-16 Score=134.47 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=43.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|+|++|+..+++++.++|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 7788999999999999999999999999999995432 33345899999999876
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.67 E-value=1.3e-16 Score=134.26 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=85.3
Q ss_pred CccccceeeEEEEEe--EEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-------
Q 026207 1 MLRLRNVFLLIVKFF--YALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG------- 68 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~--~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~------- 68 (241)
|++++|+.. +.. ..++... .+..| +++|+||||||||||++.|++.+++..|. +.++ +.++.
T Consensus 1 ml~~~~l~~---~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~--i~~~-g~~~~~~~~~~~ 74 (243)
T 1mv5_A 1 MLSARHVDF---AYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE--ITID-GQPIDNISLENW 74 (243)
T ss_dssp CEEEEEEEE---CSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSC--EEET-TEESTTTSCSCC
T ss_pred CEEEEEEEE---EeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE--EEEC-CEEhhhCCHHHH
Confidence 677888751 110 1122222 23344 89999999999999999999999887554 3333 11100
Q ss_pred -CC-CCCccc----------c--cc------------------c---hh------------hcCCCCCcccHHHHHHHHH
Q 026207 69 -GD-GDIPHS----------A--IG------------------T---AR------------RMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 69 -~~-~~~~~~----------~--~~------------------~---~~------------~~~~~~~~~~~~~~~~~~l 101 (241)
.. ..+++. + .+ . .. ....+|+|++|+..+++++
T Consensus 75 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp TTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred HhhEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH
Confidence 00 000000 0 00 0 00 1124677889999999999
Q ss_pred hcCCcEEEEcCCCCHHhHH-------HHHHHHhCCcEEEEeecCCC
Q 026207 102 NHMPEVIIVDEIGTEAEAH-------ACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~~-------~~~~~~~~g~~vi~t~H~~~ 140 (241)
.++|+++++|||++++|+. .+.... .|.++|+++|..+
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~ 199 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS 199 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH
Confidence 9999999999999999982 233333 5899999999864
No 28
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=133.06 Aligned_cols=123 Identities=13% Similarity=0.137 Sum_probs=84.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCC---------CCCcccc-------------ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGD---------GDIPHSA-------------IGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~---------~~~~~~~-------------~~~ 80 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+... ....... ++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEI 112 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHh
Confidence 89999999999999999999999877432 24556543221100 0000000 000
Q ss_pred ---------hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HHH------hCCcEEEEeecCCChh
Q 026207 81 ---------ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SIA------ERGVMLIGTAHGEWLE 142 (241)
Q Consensus 81 ---------~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~~------~~g~~vi~t~H~~~~~ 142 (241)
......+|+|++|+..+++++..+|+++++|||++++|+.... ... ..|.++|+++|..+
T Consensus 113 ~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~-- 190 (237)
T 2cbz_A 113 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMS-- 190 (237)
T ss_dssp STTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCST--
T ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChH--
Confidence 0122346778999999999999999999999999999995433 222 24889999999886
Q ss_pred hhhcCCccccccccccEEEe
Q 026207 143 NIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 143 ~~~~~p~l~~l~~~~d~V~~ 162 (241)
.+ .. ||+|++
T Consensus 191 ------~~-~~---~d~v~~ 200 (237)
T 2cbz_A 191 ------YL-PQ---VDVIIV 200 (237)
T ss_dssp ------TG-GG---SSEEEE
T ss_pred ------HH-Hh---CCEEEE
Confidence 33 24 777776
No 29
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.65 E-value=3.7e-17 Score=151.84 Aligned_cols=182 Identities=10% Similarity=0.072 Sum_probs=124.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCccc--cccch----hhcCCCCCcccH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHS--AIGTA----RRMQVPEPSLQH 93 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~--~~~~~----~~~~~~~~~~~~ 93 (241)
+++|.||||||||||++++++..++. |.+++|+. .++.... +..... ..+.. .....++.+.++
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~-~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q 360 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACAN-KERAILFA-YEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHL 360 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEE-SSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEE-EeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHH
Confidence 89999999999999999999998776 66777775 3332100 000000 00000 011224667899
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCHHhHH-----HH-------HHHHhCCcEEEEeecCCChhhhhcCC--ccccccccccE
Q 026207 94 KVMIEAVENHMPEVIIVDEIGTEAEAH-----AC-------RSIAERGVMLIGTAHGEWLENIIKNP--ILSDLIGGVDT 159 (241)
Q Consensus 94 ~~~~~~~l~~~p~vlilDE~~~~~d~~-----~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p--~l~~l~~~~d~ 159 (241)
+.+++.++..+|+++|+| |.+++|.. .. ..+++.|+++|.++|.....+.++.| .++++ ||+
T Consensus 361 ~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~---~D~ 436 (525)
T 1tf7_A 361 QIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTI---TDT 436 (525)
T ss_dssp HHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTT---CSE
T ss_pred HHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCccccee---eeE
Confidence 999999999999999999 98887764 22 24566799999999998445555543 56778 999
Q ss_pred EEe---CChHHHHHHHHHhhhccCCCC-CceEEEEEEcCceEEeecchHHHHHHhcCCCcc
Q 026207 160 VTL---GDEEARARRCQKSILERKAPP-TFYFLIEMRERHYWVTHKTEKSVDMLLRGKTPL 216 (241)
Q Consensus 160 V~~---~~~~~~~~~~~~~~k~r~g~~-~~~~~fe~~~~g~~~~~~~~~~~~~~l~G~~~~ 216 (241)
|++ ++......|.++.+|+|+++. .....|+|++.|+.+. ++.....-++.|....
T Consensus 437 vi~L~~ge~~~~~~R~l~v~K~R~~~~~~~~~~f~i~~~Gi~v~-~~~~~~~~~l~g~~~~ 496 (525)
T 1tf7_A 437 IILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIK-DSFRNFERIISGSPTR 496 (525)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSSCCCCBCEEEEECSSCEEEE-EECTTEECCTTSSCEE
T ss_pred EEEEEEEEeCCEEEEEEEEEECCCCCCCCCEEEEEEcCCCEEEe-ccccccccccCCCCcc
Confidence 996 443333348889999999987 6889999999999743 3222334566665443
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.65 E-value=5.7e-17 Score=137.01 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=94.0
Q ss_pred CccccceeeEEEEEeEEeeCcc--eeecc-EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEE
Q 026207 1 MLRLRNVFLLIVKFFYALYSIN--KIIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVV 59 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~--~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~ 59 (241)
||+++|+..- .+++.. .+..| +++|+||||||||||++.+++.+++. |. ++.
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 4677777521 233332 34444 89999999999999999999999876 43 133
Q ss_pred EEcCCcccCCCCC---------Ccc---cc-------ccc----hhhcCCCCCcccHHHHHHHHHhcCCc-------EEE
Q 026207 60 IVDTSNEIGGDGD---------IPH---SA-------IGT----ARRMQVPEPSLQHKVMIEAVENHMPE-------VII 109 (241)
Q Consensus 60 ~i~~~~e~~~~~~---------~~~---~~-------~~~----~~~~~~~~~~~~~~~~~~~~l~~~p~-------vli 109 (241)
|+.+...+..... ... .. .+. ......+|+|++|+..+++++..+|+ +++
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll 156 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 156 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE
Confidence 4432222111000 000 00 000 01123467788999999999999999 999
Q ss_pred EcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 110 VDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 110 lDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|||++++|+.... ...+.|.++|+++|..+ .+..+ ||++++
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~--------~~~~~---~d~v~~ 205 (249)
T 2qi9_C 157 LDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN--------HTLRH---AHRAWL 205 (249)
T ss_dssp ESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------HHHHH---CSEEEE
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHHHh---CCEEEE
Confidence 99999999995432 33345899999999876 44555 777776
No 31
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.64 E-value=7e-17 Score=134.75 Aligned_cols=113 Identities=10% Similarity=-0.042 Sum_probs=78.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC--------C-Cccc----c---ccc---hh-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG--------D-IPHS----A---IGT---AR- 82 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~--------~-~~~~----~---~~~---~~- 82 (241)
+++|+||||||||||++.+++.+++..|. ++.|+.+...+.... . .... . .+. ..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~ 115 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISK 115 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHh
Confidence 89999999999999999999999877432 345665433221100 0 0000 0 000 00
Q ss_pred -----------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HH-H---hCCcEEEEeecCCC
Q 026207 83 -----------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SI-A---ERGVMLIGTAHGEW 140 (241)
Q Consensus 83 -----------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~-~---~~g~~vi~t~H~~~ 140 (241)
....+|+|++|+..+++++..+|+++++|||++++|+.... .. . ..|.++|+++|..+
T Consensus 116 ~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 116 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp STTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 11356778999999999999999999999999999996543 21 1 23789999999864
No 32
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.64 E-value=2.5e-16 Score=132.91 Aligned_cols=112 Identities=21% Similarity=0.176 Sum_probs=76.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC------C-Cccc---c--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG------D-IPHS---A-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~------~-~~~~---~-- 77 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+.... . .+.. .
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 116 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVI 116 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHHH
Confidence 89999999999999999999999876332 134444322111000 0 0000 0
Q ss_pred -----ccc---hhh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 78 -----IGT---ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 78 -----~~~---~~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
.+. ..+ ...+|+|++|+..+++++..+|+++++|||++++|+.... .. ..|.
T Consensus 117 ~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-~~g~ 195 (247)
T 2ff7_A 117 YAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGR 195 (247)
T ss_dssp HHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH-HTTS
T ss_pred HHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCC
Confidence 000 001 1357778999999999999999999999999999995432 33 3589
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|..+
T Consensus 196 tviivtH~~~ 205 (247)
T 2ff7_A 196 TVIIIAHRLS 205 (247)
T ss_dssp EEEEECSSGG
T ss_pred EEEEEeCCHH
Confidence 9999999875
No 33
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.62 E-value=4.3e-16 Score=133.15 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=76.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCcc-cc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPH-SA- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~-~~- 77 (241)
+++|+||||||||||++.|++.+++..|. ++.|+.+...+... ..... ..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 126 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEI 126 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHhhhcccCChHHHH
Confidence 89999999999999999999999876332 24444432221110 00000 00
Q ss_pred ------------c-----cc----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hC
Q 026207 78 ------------I-----GT----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ER 128 (241)
Q Consensus 78 ------------~-----~~----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~ 128 (241)
+ +. -.....+|+|++|+..+++++..+|+++++|||++++|+.... ... +.
T Consensus 127 ~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~ 206 (271)
T 2ixe_A 127 TAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA 206 (271)
T ss_dssp HHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc
Confidence 0 00 0122346778899999999999999999999999999995433 222 23
Q ss_pred CcEEEEeecCCC
Q 026207 129 GVMLIGTAHGEW 140 (241)
Q Consensus 129 g~~vi~t~H~~~ 140 (241)
|.++|+++|..+
T Consensus 207 g~tviivtHd~~ 218 (271)
T 2ixe_A 207 SRTVLLITQQLS 218 (271)
T ss_dssp TSEEEEECSCHH
T ss_pred CCEEEEEeCCHH
Confidence 899999999875
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.62 E-value=7e-16 Score=131.57 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=45.6
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
+|+|++|+..+++++..+|+++++|||++++|+.... ...+.|.++|+++|..+
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 6778899999999999999999999999999995443 22235889999999876
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.62 E-value=2e-15 Score=128.44 Aligned_cols=146 Identities=18% Similarity=0.130 Sum_probs=93.1
Q ss_pred CccccceeeEEEEE--eEEeeCcc--eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc-----CCC-
Q 026207 1 MLRLRNVFLLIVKF--FYALYSIN--KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI-----GGD- 70 (241)
Q Consensus 1 ~~~~~~~~~~~~r~--~~~~~~~~--~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~-----~~~- 70 (241)
||+++|+..-.-.. .+.++... .+...+++|.||||||||||++.+++.+ |+.|. ++++ +.++ ...
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~--I~~~-g~~~~~~~~~~~i 76 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGN--IFIN-GMEVRKIRNYIRY 76 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEE--EEET-TEEGGGCSCCTTE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcE--EEEC-CEECcchHHhhhe
Confidence 78888886322110 02344433 3443499999999999999999999999 76433 3333 1110 000
Q ss_pred C-CCcccc------------------------------ccch-----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCC
Q 026207 71 G-DIPHSA------------------------------IGTA-----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIG 114 (241)
Q Consensus 71 ~-~~~~~~------------------------------~~~~-----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~ 114 (241)
. .+++.. ++.. .....+|++++|+..+++++..+|+++++|||+
T Consensus 77 ~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 77 STNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp EECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred EEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 1 111100 0000 112235667899999999999999999999999
Q ss_pred CHHhHHHHHH----HHh-CCcEEEEeecCCChhhhhcCCcccccccccc-EEEe
Q 026207 115 TEAEAHACRS----IAE-RGVMLIGTAHGEWLENIIKNPILSDLIGGVD-TVTL 162 (241)
Q Consensus 115 ~~~d~~~~~~----~~~-~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d-~V~~ 162 (241)
+++|+..... ..+ .. ++|+++|..+ .+..+ || ++++
T Consensus 157 s~LD~~~~~~l~~~L~~~~~-tviivtHd~~--------~~~~~---~d~~i~~ 198 (263)
T 2pjz_A 157 ENVDAARRHVISRYIKEYGK-EGILVTHELD--------MLNLY---KEYKAYF 198 (263)
T ss_dssp TTCCHHHHHHHHHHHHHSCS-EEEEEESCGG--------GGGGC---TTSEEEE
T ss_pred cccCHHHHHHHHHHHHHhcC-cEEEEEcCHH--------HHHHh---cCceEEE
Confidence 9999955431 112 23 9999999876 55666 88 8776
No 36
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.59 E-value=7.6e-15 Score=124.73 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=77.5
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
..++++|+||||||||||++.+++.+++....++.+.+++.+..... ......+..+.-....++..++.++.++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~-----~~~~v~q~~~gl~~~~l~~~la~aL~~~ 98 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKH-----KKSIVNQREVGEDTKSFADALRAALRED 98 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC-----SSSEEEEEEBTTTBSCHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCC-----cceeeeHHHhCCCHHHHHHHHHHHHhhC
Confidence 44589999999999999999999999775234666666554432111 0011011111111246789999999999
Q ss_pred CcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChh
Q 026207 105 PEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLE 142 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~ 142 (241)
|+++++|||++......+..+.+.|+++++|+|..+..
T Consensus 99 p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 99 PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAI 136 (261)
T ss_dssp CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHH
T ss_pred CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHH
Confidence 99999999995544444444557899999999998743
No 37
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.59 E-value=1.8e-15 Score=128.47 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=74.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC--------CC--Ccccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD--------GD--IPHSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~--------~~--~~~~~-- 77 (241)
+++|+||||||||||++.|++.+++. |. ++.|+.+...+... .. .....
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~~~-G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~ 126 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVI 126 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC-eEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCCCHHHHH
Confidence 89999999999999999999998753 22 13344322111100 00 00000
Q ss_pred -----ccch---------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCc
Q 026207 78 -----IGTA---------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGV 130 (241)
Q Consensus 78 -----~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~ 130 (241)
.+.. .+...+|+|++|+..+++++..+|+++++|||++++|+.... .. ..|.
T Consensus 127 ~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l-~~~~ 205 (260)
T 2ghi_A 127 KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RKNR 205 (260)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH-TTTS
T ss_pred HHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh-cCCC
Confidence 0000 011346778999999999999999999999999999995432 23 3488
Q ss_pred EEEEeecCCC
Q 026207 131 MLIGTAHGEW 140 (241)
Q Consensus 131 ~vi~t~H~~~ 140 (241)
++|+++|..+
T Consensus 206 tviivtH~~~ 215 (260)
T 2ghi_A 206 TLIIIAHRLS 215 (260)
T ss_dssp EEEEECSSGG
T ss_pred EEEEEcCCHH
Confidence 9999999875
No 38
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.59 E-value=7.5e-16 Score=133.76 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=75.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC--------C--Cccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG--------D--IPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~--------~--~~~~~~- 78 (241)
++.|+||||||||||++.|++.+.+..|. .+.|+.+...+.... . ......
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~ 161 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVE 161 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHH
Confidence 79999999999999999999999877432 133443222111000 0 000000
Q ss_pred ------c---chh------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 79 ------G---TAR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 79 ------~---~~~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ ... +...+|+|++|+..+++++..+|+++|+|||++.+|+.... .....+.+
T Consensus 162 ~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~T 241 (306)
T 3nh6_A 162 AAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRT 241 (306)
T ss_dssp HHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 0 000 01246778899999999999999999999999999995432 11235789
Q ss_pred EEEeecCCC
Q 026207 132 LIGTAHGEW 140 (241)
Q Consensus 132 vi~t~H~~~ 140 (241)
+|+++|..+
T Consensus 242 vi~itH~l~ 250 (306)
T 3nh6_A 242 TIVVAHRLS 250 (306)
T ss_dssp EEEECCSHH
T ss_pred EEEEEcChH
Confidence 999999875
No 39
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.59 E-value=2.3e-15 Score=140.04 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=87.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------eEEEEcCCcccCCCCCC-------------ccc-----c---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------RVVIVDTSNEIGGDGDI-------------PHS-----A---IGT 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------~v~~i~~~~e~~~~~~~-------------~~~-----~---~~~ 80 (241)
++.|+||||||||||+++|++.++++.|. .+.++.+.........+ ... . ++.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l 375 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNL 375 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCC
Confidence 89999999999999999999999887543 34454422111000000 000 0 000
Q ss_pred ----hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCC
Q 026207 81 ----ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNP 148 (241)
Q Consensus 81 ----~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p 148 (241)
......+|+|++|++.+++++.++|+++|+|||++++|+.... .. .+.|.++|+++|..+
T Consensus 376 ~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-------- 447 (538)
T 3ozx_A 376 HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-------- 447 (538)
T ss_dssp GGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------
T ss_pred HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------
Confidence 0123456778999999999999999999999999999995432 22 346899999999987
Q ss_pred ccccccccccEEEe
Q 026207 149 ILSDLIGGVDTVTL 162 (241)
Q Consensus 149 ~l~~l~~~~d~V~~ 162 (241)
.+..+ ||+|++
T Consensus 448 ~~~~~---aDri~v 458 (538)
T 3ozx_A 448 IHDYI---ADRIIV 458 (538)
T ss_dssp HHHHH---CSEEEE
T ss_pred HHHHh---CCEEEE
Confidence 55666 888877
No 40
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.58 E-value=8.3e-16 Score=137.55 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHH----H--HhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRS----I--AERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~----~--~~~g~~vi~t~H~~~ 140 (241)
+|+|++|++++++++..+|+++++|||++++|+..... . ...+.++|+++|...
T Consensus 156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e 215 (390)
T 3gd7_A 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215 (390)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 68899999999999999999999999999999954331 1 234788999999864
No 41
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.58 E-value=4.2e-15 Score=140.02 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=88.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCCCCcccc--c-----c---c----h-------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDIPHSA--I-----G---T----A------- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~~~~~~~--~-----~---~----~------- 81 (241)
++.|+||||||||||++.|++.++++.|. ++.|+.+.........+.... . . . .
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~ 463 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID 463 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCch
Confidence 89999999999999999999999877443 466776543221111100000 0 0 0 0
Q ss_pred ---hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCcc
Q 026207 82 ---RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPIL 150 (241)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l 150 (241)
.....+|+|++|++.+++++.++|+++++|||++++|+.... .. .+.|.++|+++|... .+
T Consensus 464 ~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~--------~~ 535 (607)
T 3bk7_A 464 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL--------MI 535 (607)
T ss_dssp TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------HH
T ss_pred HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HH
Confidence 123346778899999999999999999999999999995432 22 246899999999886 45
Q ss_pred ccccccccEEEe
Q 026207 151 SDLIGGVDTVTL 162 (241)
Q Consensus 151 ~~l~~~~d~V~~ 162 (241)
..+ ||+|++
T Consensus 536 ~~~---adrv~v 544 (607)
T 3bk7_A 536 DYV---SDRLIV 544 (607)
T ss_dssp HHH---CSEEEE
T ss_pred HHh---CCEEEE
Confidence 555 777776
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.57 E-value=2.5e-15 Score=129.53 Aligned_cols=117 Identities=11% Similarity=-0.015 Sum_probs=80.4
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCC-------C-Cccc----c---ccc--
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDG-------D-IPHS----A---IGT-- 80 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~-------~-~~~~----~---~~~-- 80 (241)
+..| +++|+||||||||||++.|++.+++..|. ++.|+.+...+.... . .... . .+.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~ 140 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEE 140 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHH
Confidence 3344 89999999999999999999999877432 355666433221110 0 0000 0 000
Q ss_pred -hhh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHH-------hCCcEEEEeecCCC
Q 026207 81 -ARR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA-------ERGVMLIGTAHGEW 140 (241)
Q Consensus 81 -~~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~-------~~g~~vi~t~H~~~ 140 (241)
..+ ...+|+|++|+..+++++..+|+++++|||++++|+....... ..|.++|+++|...
T Consensus 141 ~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~ 220 (290)
T 2bbs_A 141 DISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220 (290)
T ss_dssp HHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred HHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 000 1357778999999999999999999999999999996544221 23789999999874
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.57 E-value=4.4e-15 Score=138.20 Aligned_cols=125 Identities=15% Similarity=0.146 Sum_probs=88.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCCCCccc-------c----------c---cc-
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDIPHS-------A----------I---GT- 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~~~~~~-------~----------~---~~- 80 (241)
.++.|+||||||||||++.|++.+++..|. ++.|+.+.........+... . + +.
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 392 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII 392 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence 389999999999999999999999877442 46677644322111000000 0 0 00
Q ss_pred ---hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHH-hCCcEEEEeecCCChhhhhcCCc
Q 026207 81 ---ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIA-ERGVMLIGTAHGEWLENIIKNPI 149 (241)
Q Consensus 81 ---~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~-~~g~~vi~t~H~~~~~~~~~~p~ 149 (241)
......+|+|++|++.+++++..+|+++|+|||++++|+.... ... +.|.++|+++|... .
T Consensus 393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~--------~ 464 (538)
T 1yqt_A 393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL--------M 464 (538)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH--------H
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------H
Confidence 0123346778899999999999999999999999999995432 222 45899999999886 5
Q ss_pred cccccccccEEEe
Q 026207 150 LSDLIGGVDTVTL 162 (241)
Q Consensus 150 l~~l~~~~d~V~~ 162 (241)
+..+ ||+|++
T Consensus 465 ~~~~---~drv~v 474 (538)
T 1yqt_A 465 IDYV---SDRLMV 474 (538)
T ss_dssp HHHH---CSEEEE
T ss_pred HHHh---CCEEEE
Confidence 5556 788776
No 44
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.56 E-value=2.8e-15 Score=124.99 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=94.3
Q ss_pred EEEEEeCCCchHHHHHHHHH--HhccccCCCeEEEEcCCcccCC-------C-CCCcccc-----ccchhhcC-------
Q 026207 28 FFLSYFRPGVGKTTVMREIA--RVLSDEFQKRVVIVDTSNEIGG-------D-GDIPHSA-----IGTARRMQ------- 85 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~--~~l~~~~g~~v~~i~~~~e~~~-------~-~~~~~~~-----~~~~~~~~------- 85 (241)
+++|+||||||||||+++++ +...+. ..++++. ..+... . +..++.. ........
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVT-LEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPS 108 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEE-SSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEE-ccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccccc
Confidence 89999999999999999999 543333 4556665 222110 0 1111100 00000000
Q ss_pred -----CCCC---cccHHHHHHHHHhcCCcEEEEcCCCCHHh-----H-------HHHHHHHhCCcEEEEeecCCChhh--
Q 026207 86 -----VPEP---SLQHKVMIEAVENHMPEVIIVDEIGTEAE-----A-------HACRSIAERGVMLIGTAHGEWLEN-- 143 (241)
Q Consensus 86 -----~~~~---~~~~~~~~~~~l~~~p~vlilDE~~~~~d-----~-------~~~~~~~~~g~~vi~t~H~~~~~~-- 143 (241)
..+. ..........+...+|+++++|||++.+| . ..+..+++.|+++++++|..+ ..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~ 187 (251)
T 2ehv_A 109 EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHG 187 (251)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----C
T ss_pred ccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcc
Confidence 0000 01122233344468999999999998886 2 112245567999999999986 32
Q ss_pred hhcCCccccccccc-cEEEe---CChHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEEe
Q 026207 144 IIKNPILSDLIGGV-DTVTL---GDEEARARRCQKSILERKAPPT-FYFLIEMRERHYWVT 199 (241)
Q Consensus 144 ~~~~p~l~~l~~~~-d~V~~---~~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~~ 199 (241)
....+.++++ | |+|++ .+......+.++..|.|.++.. ....|++.+.|+-+.
T Consensus 188 ~~~~~~i~~~---~aD~vi~l~~~~~~~~~~r~l~i~K~r~~~~~~~~~~~~i~~~Gi~v~ 245 (251)
T 2ehv_A 188 KLSRYGIEEF---IARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVVY 245 (251)
T ss_dssp CSSSSSCGGG---GCSEEEEEEEEECSSSEEEEEEEEEETTCCCCCBEEEEEEETTEEEEC
T ss_pred cccccChhhE---eeeEEEEEeeeccCCeeEEEEEEEEccCCCcCCceEEEEECCCCeEEc
Confidence 2334455777 7 99987 1111112266667787766543 567889998888543
No 45
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.56 E-value=2.2e-15 Score=124.05 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=90.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEcCCcccCCC---CCCccccccch-----hhcCC---CCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGGD---GDIPHSAIGTA-----RRMQV---PEPS 90 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~~~~e~~~~---~~~~~~~~~~~-----~~~~~---~~~~ 90 (241)
.+++|+||||||||||++++++...+. .+..+++++ ..+.... .... +..+.. ..+.. .+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~-~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID-TENTFRPERIREIA-QNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE-SSSCCCHHHHHHHH-HHTTSCHHHHHHTEEEEECCSHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE-CCCCCCHHHHHHHH-HHcCCCHHHHhhcEEEEecCChH
Confidence 389999999999999999999965542 134678887 3321100 0000 000000 00100 0111
Q ss_pred cc---HHHHHHHHH-----hcCCcEEEEcCCCCHHhHH----------------HH---H-HHHhCCcEEEEeecCCChh
Q 026207 91 LQ---HKVMIEAVE-----NHMPEVIIVDEIGTEAEAH----------------AC---R-SIAERGVMLIGTAHGEWLE 142 (241)
Q Consensus 91 ~~---~~~~~~~~l-----~~~p~vlilDE~~~~~d~~----------------~~---~-~~~~~g~~vi~t~H~~~~~ 142 (241)
.. ...+.+.+. ..+|+++++|||++.+++. .+ . .+.+.|+++|+++|..+ .
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~-~ 182 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-N 182 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeeccc-C
Confidence 11 122223333 5689999999999987652 11 1 23456999999999886 2
Q ss_pred hhhcCCccccccccccEEEe-CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 143 NIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 143 ~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
....++++ +|.+++ .++... .+.++..|+|+++.... .|++.+.|+
T Consensus 183 ---~g~~~~~~---~d~~l~l~~~~~~-~r~l~~~K~r~~~~~~~-~f~i~~~Gl 229 (231)
T 4a74_A 183 ---GGHILAHS---ATLRVYLRKGKGG-KRIARLIDAPHLPEGEA-VFSITEKGI 229 (231)
T ss_dssp ----------C---CSEEEEEEECTTS-CEEEEEESCC--CCSCE-EEEEETTEE
T ss_pred ---cchhhHhh---ceEEEEEEecCCC-eEEEEEEeCCCCCCceE-EEEEecccc
Confidence 11256777 899888 222222 26788889999988765 999998886
No 46
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.6e-15 Score=139.70 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=87.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC-----eEEEEcCCcccCCCCCCcc--------c---------c---cc---
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK-----RVVIVDTSNEIGGDGDIPH--------S---------A---IG--- 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-----~v~~i~~~~e~~~~~~~~~--------~---------~---~~--- 79 (241)
++.|+||||||||||++.|++.++++.|. .+.++.+.........+.. . . ++
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~ 459 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD 459 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh
Confidence 68999999999999999999999887653 3566653321110000000 0 0 00
Q ss_pred -chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HH-HhCCcEEEEeecCCChhhhhcCCcc
Q 026207 80 -TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SI-AERGVMLIGTAHGEWLENIIKNPIL 150 (241)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~-~~~g~~vi~t~H~~~~~~~~~~p~l 150 (241)
.......+|+|++|++.+++++.++|+++++|||++++|+.... .. .+.|.++|+++|... .+
T Consensus 460 ~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~--------~~ 531 (608)
T 3j16_B 460 IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI--------MA 531 (608)
T ss_dssp TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH--------HH
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HH
Confidence 00123457788999999999999999999999999999985332 32 346999999999986 55
Q ss_pred ccccccccEEEe
Q 026207 151 SDLIGGVDTVTL 162 (241)
Q Consensus 151 ~~l~~~~d~V~~ 162 (241)
..+ ||+|++
T Consensus 532 ~~~---aDrviv 540 (608)
T 3j16_B 532 TYL---ADKVIV 540 (608)
T ss_dssp HHH---CSEEEE
T ss_pred HHh---CCEEEE
Confidence 556 788776
No 47
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.55 E-value=1.5e-14 Score=128.78 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=81.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
.++++|+|||||||||+++.+++.+++....++++++++.+.... ...+...+..+......+...++.+++++|
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~-----~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFK-----HKKSIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCC-----CSSSEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhc-----cCceEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 458999999999999999999999987533577788765553211 111111111111122455778899999999
Q ss_pred cEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhh
Q 026207 106 EVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 106 ~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
++|++|||++......+..+.+.|+++++|+|.+++.+.+
T Consensus 211 d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~ 250 (372)
T 2ewv_A 211 DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTI 250 (372)
T ss_dssp SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHH
Confidence 9999999997766555556667899999999998855443
No 48
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.55 E-value=4.6e-15 Score=139.32 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=82.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC------C-C-cc---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG------D-I-PH---SAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~------~-~-~~---~~~ 78 (241)
.++|.||||||||||++.+++.++|+.|. ++.|+.+...+.... . . +. ...
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHH
Confidence 89999999999999999999999887443 233333221111000 0 0 00 000
Q ss_pred -------cc---hh------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCc
Q 026207 79 -------GT---AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGV 130 (241)
Q Consensus 79 -------~~---~~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~ 130 (241)
+. .. +...+|+|++|+..+++++..+|+++++|||++.+|+.... .....|+
T Consensus 451 ~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~ 530 (582)
T 3b5x_A 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK 530 (582)
T ss_pred HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC
Confidence 00 00 01246778899999999999999999999999999995432 1123489
Q ss_pred EEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 131 MLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 131 ~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
++|.++|..+ .+. . ||+|+.
T Consensus 531 tvi~itH~~~--------~~~-~---~d~i~~ 550 (582)
T 3b5x_A 531 TVLVIAHRLS--------TIE-Q---ADEILV 550 (582)
T ss_pred EEEEEecCHH--------HHH-h---CCEEEE
Confidence 9999999875 332 3 788877
No 49
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.52 E-value=4.7e-14 Score=123.73 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=76.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.+++|+||||||||||++.+++.++++ ...+++++..++.... .....+.. ..++++++..+++++.++|+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~--~~~~i~~~-----~ggg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKH--HKNYTQLF-----FGGNITSADCLKSCLRMRPD 242 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSS--CSSEEEEE-----CBTTBCHHHHHHHHTTSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeecccccc--chhEEEEE-----eCCChhHHHHHHHHhhhCCC
Confidence 379999999999999999999999887 3457777554442110 01111110 01689999999999999999
Q ss_pred EEEEcCCCCHHhHHHHHHHHhCCc-EEEEeecCCCh
Q 026207 107 VIIVDEIGTEAEAHACRSIAERGV-MLIGTAHGEWL 141 (241)
Q Consensus 107 vlilDE~~~~~d~~~~~~~~~~g~-~vi~t~H~~~~ 141 (241)
++++|||++..... ...+..+|+ ++++|+|..+.
T Consensus 243 ilildE~~~~e~~~-~l~~~~~g~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 243 RIILGELRSSEAYD-FYNVLCSGHKGTLTTLHAGSS 277 (330)
T ss_dssp EEEECCCCSTHHHH-HHHHHHTTCCCEEEEEECSSH
T ss_pred EEEEcCCChHHHHH-HHHHHhcCCCEEEEEEcccHH
Confidence 99999999854333 334445676 69999999973
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.51 E-value=2.2e-14 Score=135.18 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=81.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEE-------EEcCCcccC--------C--C-----CCC---cc-------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVV-------IVDTSNEIG--------G--D-----GDI---PH------- 75 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~-------~i~~~~e~~--------~--~-----~~~---~~------- 75 (241)
++.|+||||||||||++.|+|.+.++.|.... ++. +.++. . . ... +.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~ 197 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR-GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 197 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTT-TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeC-CEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence 89999999999999999999999877555100 000 10000 0 0 000 00
Q ss_pred ---------cc-------cc----chhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhC
Q 026207 76 ---------SA-------IG----TARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAER 128 (241)
Q Consensus 76 ---------~~-------~~----~~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~ 128 (241)
.. ++ .-+....+|+|++|++.+++++.++|+++++|||++++|+... ....+.
T Consensus 198 e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~ 277 (607)
T 3bk7_A 198 ELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277 (607)
T ss_dssp HHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc
Confidence 00 00 0012334677889999999999999999999999999999532 234446
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
|.++|+++|..+ .+..+ +|+|++
T Consensus 278 g~tvIivsHdl~--------~~~~~---adri~v 300 (607)
T 3bk7_A 278 GKAVLVVEHDLA--------VLDYL---SDVIHV 300 (607)
T ss_dssp TCEEEEECSCHH--------HHHHH---CSEEEE
T ss_pred CCEEEEEecChH--------HHHhh---CCEEEE
Confidence 999999999876 34445 666655
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.51 E-value=2.8e-14 Score=132.83 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=53.4
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCChhhhhcCCccccccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGV 157 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~ 157 (241)
..+|++++|++.+++++.++|+++|+|||++.+|+... ....+.|.++|+++|... .+..+ |
T Consensus 157 ~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~--------~~~~~---~ 225 (538)
T 1yqt_A 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA--------VLDYL---S 225 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH--------HHHHH---C
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHHHh---C
Confidence 34677889999999999999999999999999999532 234456999999999876 44455 6
Q ss_pred cEEEe
Q 026207 158 DTVTL 162 (241)
Q Consensus 158 d~V~~ 162 (241)
|+|++
T Consensus 226 dri~v 230 (538)
T 1yqt_A 226 DIIHV 230 (538)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77665
No 52
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.50 E-value=4.6e-14 Score=131.26 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=53.8
Q ss_pred cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 84 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
...+|++++|++.+++++.++|+++|+|||++++|+.... ... .|.++|+++|..+ .+..+
T Consensus 136 ~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~g~tii~vsHdl~--------~~~~~--- 203 (538)
T 3ozx_A 136 ANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIVVDHDLI--------VLDYL--- 203 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-TTSEEEEECSCHH--------HHHHH---
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-CCCEEEEEEeChH--------HHHhh---
Confidence 3446778899999999999999999999999999995432 333 3899999999986 45555
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||+|++
T Consensus 204 ~d~i~v 209 (538)
T 3ozx_A 204 TDLIHI 209 (538)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777665
No 53
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.50 E-value=3.1e-14 Score=117.03 Aligned_cols=168 Identities=11% Similarity=0.003 Sum_probs=96.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC---C----CCCCcccc----ccchhhc----------C
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG---G----DGDIPHSA----IGTARRM----------Q 85 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~---~----~~~~~~~~----~~~~~~~----------~ 85 (241)
.+++|+||||||||||++++++...+. +.+++++....... . .+...+.. ....... .
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQWSLV 102 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CTTBCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCceeeec
Confidence 389999999999999999999887665 45778776221100 0 00000000 0000000 0
Q ss_pred CCCCcccHHHHHHHHHhcCCc--EEEEcCCCCHH--hHH-------HHHH-HHhCCcEEEEeecCCCh-hhhhcCCcccc
Q 026207 86 VPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEA--EAH-------ACRS-IAERGVMLIGTAHGEWL-ENIIKNPILSD 152 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~--vlilDE~~~~~--d~~-------~~~~-~~~~g~~vi~t~H~~~~-~~~~~~p~l~~ 152 (241)
..+.+...+.+.+.+..++|+ ++++|||++.. |+. .+.. +.+.|+++++++|..+. .+... +.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~-~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFG-FGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC------------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccc-cchhe
Confidence 001122234455556667999 99999999665 541 1222 34569999999999831 12221 45677
Q ss_pred ccccccEEEe---CChHHHHHHHHHhhhccCCCCC-ceEEEEEEcC-ceEEe
Q 026207 153 LIGGVDTVTL---GDEEARARRCQKSILERKAPPT-FYFLIEMRER-HYWVT 199 (241)
Q Consensus 153 l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~-g~~~~ 199 (241)
+ ||.|++ .+......+.+...|+|.++.. ....|++.+. |+.+.
T Consensus 182 ~---~d~vi~l~~~~~~~~~~r~l~v~K~r~~~~~~~~~~f~i~~~~Gi~~~ 230 (235)
T 2w0m_A 182 V---ADGIIRFRRMIRNGELHRYILIEKMRQTDHDKHVWEIDIVNGKGIVLK 230 (235)
T ss_dssp H---CSEEEEEEEEEETTEEEEEEEEEEETTCCCCCSCEEEEEETTTEEEEE
T ss_pred e---eeEEEEEEEEecCCcEEEEEEEEeccCCcccceeEEEEEcCCCCeEEe
Confidence 7 899987 2111111256677788877654 5678999988 88544
No 54
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.48 E-value=2.5e-14 Score=134.28 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=82.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC-------CC-cc---ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG-------DI-PH---SAI 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~-------~~-~~---~~~ 78 (241)
.++|+||||||||||++.+++.++|+.|. ++.|+.+...+.... .. +. ...
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 450 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 450 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHH
Confidence 79999999999999999999999877432 234443322111100 00 00 000
Q ss_pred -------cc---hh------------hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCC
Q 026207 79 -------GT---AR------------RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERG 129 (241)
Q Consensus 79 -------~~---~~------------~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g 129 (241)
+. .. +...+|+|++|+..+++++..+|+++++|||++.+|+.... .. ..|
T Consensus 451 ~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~-~~~ 529 (582)
T 3b60_A 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKN 529 (582)
T ss_dssp HHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHH-hCC
Confidence 00 00 11346778899999999999999999999999999995432 22 348
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
.++|.++|..+ .+. . ||+|+.
T Consensus 530 ~tvi~itH~~~--------~~~-~---~d~i~~ 550 (582)
T 3b60_A 530 RTSLVIAHRLS--------TIE-Q---ADEIVV 550 (582)
T ss_dssp SEEEEECSCGG--------GTT-T---CSEEEE
T ss_pred CEEEEEeccHH--------HHH-h---CCEEEE
Confidence 99999999875 332 3 788877
No 55
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.48 E-value=1.1e-14 Score=137.00 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCccccc-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSAI- 78 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~~- 78 (241)
.+.|+||||||||||++.+++.++++.|. ++.|+.+...+... ........
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~ 450 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIV 450 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHH
Confidence 79999999999999999999999877432 23344332211100 00000000
Q ss_pred -----------------cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 79 -----------------GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 79 -----------------~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+.. .+-..+|+|++|+..+++++..+|+++++|||++.+|+.... .....|+|
T Consensus 451 ~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t 530 (587)
T 3qf4_A 451 EAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCT 530 (587)
T ss_dssp HHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCE
T ss_pred HHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCE
Confidence 000 011235678899999999999999999999999999995432 12245899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+. . ||+|++
T Consensus 531 vi~itH~l~--------~~~-~---~d~i~v 549 (587)
T 3qf4_A 531 TFIITQKIP--------TAL-L---ADKILV 549 (587)
T ss_dssp EEEEESCHH--------HHT-T---SSEEEE
T ss_pred EEEEecChH--------HHH-h---CCEEEE
Confidence 999999875 332 3 788877
No 56
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.46 E-value=1.1e-14 Score=136.78 Aligned_cols=126 Identities=16% Similarity=0.166 Sum_probs=84.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC-------Ccc---cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD-------IPH---SAIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~-------~~~---~~~~ 79 (241)
.+.|+||||||||||++.+++.++|+.|. ++.|+.+...+..... .+. ....
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 448 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV 448 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHH
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887432 2344443222211000 000 0000
Q ss_pred ch----------------------hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 80 TA----------------------RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 80 ~~----------------------~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
.+ .+-..+|+|++|+..+++++..+|+++++|||++++|+.... .....+.|
T Consensus 449 ~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t 528 (578)
T 4a82_A 449 EAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRT 528 (578)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSE
T ss_pred HHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCE
Confidence 00 001236778899999999999999999999999999995432 22245789
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe-CCh
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDE 165 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~ 165 (241)
++.++|..+ .+. . ||+|+. .++
T Consensus 529 ~i~itH~l~--------~~~-~---~d~i~~l~~G 551 (578)
T 4a82_A 529 TLIVAHRLS--------TIT-H---ADKIVVIENG 551 (578)
T ss_dssp EEEECSSGG--------GTT-T---CSEEEEEETT
T ss_pred EEEEecCHH--------HHH-c---CCEEEEEECC
Confidence 999999886 332 2 788887 443
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.45 E-value=6.9e-14 Score=131.67 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=55.1
Q ss_pred cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 84 MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
...+|++++|++.+++++.++|+++++|||++++|+.... .....|.++|+++|..+ .+..+
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~--------~~~~~--- 287 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS--------VLDYL--- 287 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH--------HHHHH---
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--------HHHHh---
Confidence 3456778999999999999999999999999999995432 33456899999999886 55556
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
+|+|++
T Consensus 288 ~drv~v 293 (608)
T 3j16_B 288 SDFVCI 293 (608)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777766
No 58
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.44 E-value=4.1e-13 Score=124.10 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=86.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.++|+||||||||||++++++.++++ .+++++++..|+.... +.+ .....+......+..+...+..+++++||+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~--~~~-v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYH--ENW-IAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCC--SSE-EEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCC--CCe-EEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 69999999999999999999999877 6778888776664321 111 111111222334577888899999999999
Q ss_pred EEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhhcC
Q 026207 108 IIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENIIKN 147 (241)
Q Consensus 108 lilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~ 147 (241)
++++|++..+ ...+.++.++|+.+++|.|++++.+++.+
T Consensus 337 iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~R 375 (511)
T 2oap_1 337 IIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYR 375 (511)
T ss_dssp EEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHH
T ss_pred EEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHH
Confidence 9999999876 55566777889999999999998877654
No 59
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.43 E-value=7.5e-14 Score=131.47 Aligned_cols=123 Identities=16% Similarity=0.115 Sum_probs=83.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC----------CCcccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG----------DIPHSAIG 79 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~----------~~~~~~~~ 79 (241)
.+.|+||||||||||++.+++.+.++.|. ++.++.+...+.... ........
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~ 462 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIK 462 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999877432 234444322211100 00000000
Q ss_pred ch----------hh------------cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 80 TA----------RR------------MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 80 ~~----------~~------------~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
.+ .+ -..+|+|++|+..+++++..+|+++++|||++.+|+.... .....|+|
T Consensus 463 ~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t 542 (598)
T 3qf4_B 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKT 542 (598)
T ss_dssp HHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCE
Confidence 00 00 1246778899999999999999999999999999995432 11235899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+. . ||+|+.
T Consensus 543 ~i~itH~l~--------~~~-~---~d~i~~ 561 (598)
T 3qf4_B 543 SIIIAHRLN--------TIK-N---ADLIIV 561 (598)
T ss_dssp EEEESCCTT--------HHH-H---CSEEEE
T ss_pred EEEEecCHH--------HHH-c---CCEEEE
Confidence 999999987 332 2 788887
No 60
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.40 E-value=2.7e-13 Score=112.58 Aligned_cols=169 Identities=15% Similarity=0.061 Sum_probs=98.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------CCCCcccc-----ccchh----hcC---
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------DGDIPHSA-----IGTAR----RMQ--- 85 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~~~~~~~~-----~~~~~----~~~--- 85 (241)
..+++|+||||+|||||+.+++....+. +.+++|++ .++... .+..++.. +.... .+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~-~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 100 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVA-LEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSK 100 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-ccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhccccc
Confidence 3389999999999999988887766544 57888887 333210 01111000 00000 000
Q ss_pred -----CCCCccc----HHHHHHHHHhcCCcEEEEcCCCCHH--hH---H-----HHHHHHhCCcEEEEeecCCChhhhhc
Q 026207 86 -----VPEPSLQ----HKVMIEAVENHMPEVIIVDEIGTEA--EA---H-----ACRSIAERGVMLIGTAHGEWLENIIK 146 (241)
Q Consensus 86 -----~~~~~~~----~~~~~~~~l~~~p~vlilDE~~~~~--d~---~-----~~~~~~~~g~~vi~t~H~~~~~~~~~ 146 (241)
....... ...+.+.+...+|+++++|+++... +. . ....+++.|++++.+.|..+......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~ 180 (247)
T 2dr3_A 101 EYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFG 180 (247)
T ss_dssp CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC
T ss_pred ccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCccccc
Confidence 0000112 2223333345789999999998764 22 1 11234567999999999987333344
Q ss_pred CCccccccccccEEEe--CC-hHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEEe
Q 026207 147 NPILSDLIGGVDTVTL--GD-EEARARRCQKSILERKAPPT-FYFLIEMRERHYWVT 199 (241)
Q Consensus 147 ~p~l~~l~~~~d~V~~--~~-~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~~ 199 (241)
+|.+++. +|.|+. .+ ......+.+...|+|.++.. ....|++.+.|+.+.
T Consensus 181 ~~~~~~~---~D~vi~L~~~~~~~~~~r~l~v~K~R~~~~~~~~~~f~i~~~Gi~~~ 234 (247)
T 2dr3_A 181 GPGVEHG---VDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFDITDKGIIVY 234 (247)
T ss_dssp -CCHHHH---SSEEEEEEEEEETTEEEEEEEEEEETTSCCCCBCEEEEEETTEEEEC
T ss_pred cccccee---EEEEEEEEEEccCCeeEEEEEEEECCCCCCCCceEEEEEcCCCEEEe
Confidence 5667777 899887 11 11111266778899988765 677899999898543
No 61
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.39 E-value=3.3e-12 Score=115.25 Aligned_cols=111 Identities=20% Similarity=0.240 Sum_probs=85.2
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC-CcccHHHHHHHHHhc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE-PSLQHKVMIEAVENH 103 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ 103 (241)
..++++|+||||||||||++++++.+++. ..+|.+++++.|...... . +..+.. .+..+...+..++++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~~~~~-~--------q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDIDGI-G--------QTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCCSSS-E--------EEECBGGGTBCHHHHHHHHGGG
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhccCCc-c--------eEEEccccCcCHHHHHHHHhcc
Confidence 45689999999999999999999999876 457888886666432110 0 111111 256778888999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcEEEEeecCCChhhhh
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVMLIGTAHGEWLENII 145 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~vi~t~H~~~~~~~~ 145 (241)
+|++++++|++..+.+.....+..+|+.++.|.|.++..+.+
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i 277 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV 277 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH
Confidence 999999999999887777777778899999999998865544
No 62
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.37 E-value=8.8e-13 Score=124.08 Aligned_cols=126 Identities=14% Similarity=0.145 Sum_probs=83.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CC---Cccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GD---IPHS 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~---~~~~ 76 (241)
.++|.||||||||||++.+++.++|+.|. ++.++.+...+... .. ....
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 451 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAE 451 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHH
Confidence 79999999999999999999999876332 23444432221110 00 0000
Q ss_pred cc-------c-----------chhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhC
Q 026207 77 AI-------G-----------TARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAER 128 (241)
Q Consensus 77 ~~-------~-----------~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~ 128 (241)
.. + ....+ ..+|+|++|+..+++++..+|+++++|||++.+|+.... .....
T Consensus 452 ~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 531 (595)
T 2yl4_A 452 EIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD 531 (595)
T ss_dssp HHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc
Confidence 00 0 00001 346778899999999999999999999999999995432 11224
Q ss_pred CcEEEEeecCCChhhhhcCCccccccccccEEEe-CCh
Q 026207 129 GVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDE 165 (241)
Q Consensus 129 g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~ 165 (241)
|.++|.++|..+ .+ .. ||+|+. .++
T Consensus 532 ~~tvi~itH~~~--------~~-~~---~d~i~~l~~G 557 (595)
T 2yl4_A 532 GRTVLVIAHRLS--------TI-KN---ANMVAVLDQG 557 (595)
T ss_dssp TSEEEEECCCHH--------HH-HH---SSEEEEEETT
T ss_pred CCEEEEEecCHH--------HH-Hc---CCEEEEEECC
Confidence 889999999875 22 23 788877 443
No 63
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.37 E-value=2.2e-12 Score=106.86 Aligned_cols=163 Identities=14% Similarity=0.067 Sum_probs=88.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh--cccc---CCCeEEEEcCCcccCCCC-CC-ccccccch-----hhcCCCC--Cccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV--LSDE---FQKRVVIVDTSNEIGGDG-DI-PHSAIGTA-----RRMQVPE--PSLQ 92 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~--l~~~---~g~~v~~i~~~~e~~~~~-~~-~~~~~~~~-----~~~~~~~--~~~~ 92 (241)
.+++|+||||||||||++++++. .++. .+..++|++ .++..... .. ....++.. ..+.... ....
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID-TEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE-SSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE-CCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 38999999999999999999995 4331 136788988 33311000 00 00000000 0010000 0111
Q ss_pred H----HHHHHHHHhcCCcEEEEcCCCCHHhHH-------H-----HH--------HHHhCCcEEEEeecCCChhhh---h
Q 026207 93 H----KVMIEAVENHMPEVIIVDEIGTEAEAH-------A-----CR--------SIAERGVMLIGTAHGEWLENI---I 145 (241)
Q Consensus 93 ~----~~~~~~~l~~~p~vlilDE~~~~~d~~-------~-----~~--------~~~~~g~~vi~t~H~~~~~~~---~ 145 (241)
. ..+.+.+..++|++++|||++...+.. . .. .+.+.|++++++.|..+-.+. +
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~ 183 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMF 183 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------------
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCcccc
Confidence 1 112333445789999999999876542 1 11 234469999999998752221 1
Q ss_pred ----cCC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 146 ----KNP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 146 ----~~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
..| .++++ ||.+++ +++. . +.+...|+|.++... ..|++.+.|+.
T Consensus 184 ~~~~~~~~g~~~~~~~---~d~vi~l~~~~~~--~-r~l~v~K~r~~~~~~-~~f~I~~~Gi~ 239 (243)
T 1n0w_A 184 AADPKKPIGGNIIAHA---STTRLYLRKGRGE--T-RICKIYDSPCLPEAE-AMFAINADGVG 239 (243)
T ss_dssp -------------CCT---TCEEEEEEECSTT--E-EEEEECCBTTBSCEE-EEEEEETTEEE
T ss_pred CCCcccCCccChhhhc---CcEEEEEEEcCCC--e-EEEEEEECCCCCCCe-EEEEEeCCccc
Confidence 011 25556 999888 3322 2 567778899887654 78999988873
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.36 E-value=2.9e-12 Score=125.65 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=81.5
Q ss_pred EEEEEeCCCchHHHHHHHHHH-hcc---ccCCCeEEEEcCCc-ccCCCCCC--------c--cc-------cccc-----
Q 026207 28 FFLSYFRPGVGKTTVMREIAR-VLS---DEFQKRVVIVDTSN-EIGGDGDI--------P--HS-------AIGT----- 80 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~-~l~---~~~g~~v~~i~~~~-e~~~~~~~--------~--~~-------~~~~----- 80 (241)
+++|+||||||||||++.|++ .+. .....++.|+.+.. .......+ . .. .++.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~ 542 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMI 542 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhh
Confidence 799999999999999999994 221 00012355655321 11100000 0 00 0010
Q ss_pred hhhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCChhhhhcCCcccccccc
Q 026207 81 ARRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGG 156 (241)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~ 156 (241)
......+|+|++++..+++++..+|+++|+|||++++|+.... .....|.++|+++|... .+.++
T Consensus 543 ~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~--------~l~~~--- 611 (986)
T 2iw3_A 543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV--------FLDNV--- 611 (986)
T ss_dssp HSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHH--------HHHHH---
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHH--------HHHHh---
Confidence 0123457889999999999999999999999999999995543 22236899999999876 45555
Q ss_pred ccEEEe
Q 026207 157 VDTVTL 162 (241)
Q Consensus 157 ~d~V~~ 162 (241)
||+|++
T Consensus 612 adrii~ 617 (986)
T 2iw3_A 612 CEYIIN 617 (986)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 677665
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.36 E-value=2.1e-13 Score=133.57 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=55.1
Q ss_pred CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeecCCChhhhhcCCccccccccccEE
Q 026207 85 QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTV 160 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V 160 (241)
..+|+|++|+..+++++.++|++||+|||++++|+.... ...+.|.++|+++|... .+..+ ||+|
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e--------~v~~l---~DrV 968 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE--------FTKNL---TEEV 968 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHH--------HHTTT---CCEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHH--------HHHHh---CCEE
Confidence 457778999999999999999999999999999996544 22344779999999876 55666 8988
Q ss_pred Ee
Q 026207 161 TL 162 (241)
Q Consensus 161 ~~ 162 (241)
+.
T Consensus 969 iv 970 (986)
T 2iw3_A 969 WA 970 (986)
T ss_dssp EC
T ss_pred EE
Confidence 87
No 66
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.35 E-value=3.3e-12 Score=112.72 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=92.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc--cccC---CCeEEEEcCCcccCCC---CCCcccc---ccc-hhhcCC---CC-Ccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL--SDEF---QKRVVIVDTSNEIGGD---GDIPHSA---IGT-ARRMQV---PE-PSL 91 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l--~~~~---g~~v~~i~~~~e~~~~---~~~~~~~---~~~-~~~~~~---~~-~~~ 91 (241)
++.|+||||||||||++++++.. ++.. +.+++|++ .++.... ...++.. ... ...+.+ .. ...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~-~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~ 211 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID-TENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQ 211 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE-SSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe-CCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHH
Confidence 89999999999999999999988 4443 25888998 4433100 0000000 000 000001 11 111
Q ss_pred cHHHH-HHHHH-h-----cCCcEEEEcCCCCHHhHHH------------HH--------HHHhCCcEEEEeecCCChhhh
Q 026207 92 QHKVM-IEAVE-N-----HMPEVIIVDEIGTEAEAHA------------CR--------SIAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 92 ~~~~~-~~~~l-~-----~~p~vlilDE~~~~~d~~~------------~~--------~~~~~g~~vi~t~H~~~~~~~ 144 (241)
.+... +.... . .+|+++|+|||++.+|+.. .. .+...|+++|++.|..+-.+.
T Consensus 212 ~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~ 291 (349)
T 1pzn_A 212 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDA 291 (349)
T ss_dssp HHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----
T ss_pred HHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccccc
Confidence 11111 22222 2 5899999999999987631 11 234468999999998752221
Q ss_pred h-------cC-CccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 145 I-------KN-PILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 145 ~-------~~-p~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
. .. ..+++. ++.+++ ..+ . .|.++..++++++... ..|+|++.|+
T Consensus 292 ~~~~~~~~~~G~~l~~~---~~~rL~l~~~~~--~-~Ri~k~~ks~~~~~~~-~~f~It~~Gi 347 (349)
T 1pzn_A 292 FFGDPTRPIGGHILAHS---ATLRVYLRKGKG--G-KRIARLIDAPHLPEGE-AVFSITEKGI 347 (349)
T ss_dssp ----------CCCCCTT---CSEEEEEEECTT--S-EEEEEESCSSSSCCSE-EEEEEETTEE
T ss_pred ccCCccccCCcceEeec---CcEEEEEEEcCC--C-eEEEEEEeCCCCCCeE-EEEEEcCCCC
Confidence 1 11 134454 677666 222 1 2667777888877665 7999999886
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.34 E-value=7.4e-13 Score=105.17 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=68.6
Q ss_pred eecc-EEEEEeCCCchHHHHHH------------HHHHhccccCCCeEEEEcCCcccCCCCCCcc--ccccc---hhhcC
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMR------------EIARVLSDEFQKRVVIVDTSNEIGGDGDIPH--SAIGT---ARRMQ 85 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~------------~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~--~~~~~---~~~~~ 85 (241)
+..| +++|+||||||||||++ .+.+.+.++.+.. .+. ............ ...+. .....
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~ 82 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQ--TVT-GAAFDVLHYIVSKRLQLGKLTVVDATN 82 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCG--GGH-HHHHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccch--hhH-HHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 3344 89999999999999999 5555554442210 000 000000000000 00000 00111
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHH----------------HH-------HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA----------------CR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~----------------~~-------~~~~~g~~vi~t~H~~~ 140 (241)
..+++.+++..++.++..+|+++++|||++++|+.. .. .....|.++|.++|..+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 223467899999999999999999999999999862 11 23345999999999875
No 68
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.34 E-value=3.4e-13 Score=136.94 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=91.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC--------C-CCCccc----------------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG--------D-GDIPHS---------------------- 76 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~--------~-~~~~~~---------------------- 76 (241)
.++|+||+|||||||++.|.+.+.+..|. +.++ +.++.. . ..+|+.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~--I~iD-G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~s 1183 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYDTLGGE--IFID-GSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT 1183 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSCCSSSE--EEET-TEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSC
T ss_pred EEEEECCCCChHHHHHHHHhcCccCCCCE--EEEC-CEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCC
Confidence 69999999999999999999999887553 4443 221110 0 000000
Q ss_pred --cc------------------cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH---HHH---
Q 026207 77 --AI------------------GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR---SIA--- 126 (241)
Q Consensus 77 --~~------------------~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~---~~~--- 126 (241)
.+ |.-..+ ..+|+|++|+..+++++..+|++++|||+++.+|++.-. ++.
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA 1263 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 00 000001 124557799999999999999999999999999985332 222
Q ss_pred hCCcEEEEeecCCChhhhhcCCccccccccccEEEe-CChHHHHHHHHHhhhcc
Q 026207 127 ERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL-GDEEARARRCQKSILER 179 (241)
Q Consensus 127 ~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~-~~~~~~~~~~~~~~k~r 179 (241)
..|+|+|+.+|-.+ .+.+ ||+|++ .+|.....+..+++.++
T Consensus 1264 ~~~~TvI~IAHRLs--------Ti~~----aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1264 REGRTCIVIAHRLN--------TVMN----ADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp SSSSEEEEECSSSS--------TTTT----CSEEEEESSSSEEEEECHHHHHHC
T ss_pred cCCCEEEEeccCHH--------HHHh----CCEEEEEECCEEEEECCHHHHHhC
Confidence 35899999999886 4444 799998 55544334666777665
No 69
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.33 E-value=3.4e-12 Score=104.15 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=96.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCC-ccccccc-----hhhcCC--CCCcccHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDI-PHSAIGT-----ARRMQV--PEPSLQHKVMI 97 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~-~~~~~~~-----~~~~~~--~~~~~~~~~~~ 97 (241)
..+++|+||||+|||||++++++ .+ +.+++|++........... .....+. ...+.. .+....++..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~--~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LS--GKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HH--CSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--Hc--CCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 34899999999999999999999 22 4789999833211100000 0000000 001111 12223333333
Q ss_pred HH--HHhc-CCcEEEEcCCCCHHhH--------H----H---HH-HHHhCCcEEEEeecCCChhh-hhcCC----ccccc
Q 026207 98 EA--VENH-MPEVIIVDEIGTEAEA--------H----A---CR-SIAERGVMLIGTAHGEWLEN-IIKNP----ILSDL 153 (241)
Q Consensus 98 ~~--~l~~-~p~vlilDE~~~~~d~--------~----~---~~-~~~~~g~~vi~t~H~~~~~~-~~~~p----~l~~l 153 (241)
+. ++.. +|+++|+|||++.++. . . +. .+++.|++++++.|..+..+ .-..| .++++
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~ 175 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYR 175 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHT
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeec
Confidence 32 3333 5999999999988653 1 1 11 23455899999999875211 11123 24556
Q ss_pred cccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceEE
Q 026207 154 IGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHYWV 198 (241)
Q Consensus 154 ~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~~ 198 (241)
||.|+. .+... .+.+...|+|.++......|++.+.|+.+
T Consensus 176 ---~d~vi~l~~~~~~~--~r~l~v~K~r~~~~~~~~~f~I~~~Gi~~ 218 (220)
T 2cvh_A 176 ---CKDILRLDKLPKPG--LRVAVLERHRFRPEGLMAYFRITERGIED 218 (220)
T ss_dssp ---SSEEEEEEECSSTT--EEEEEEEECSSSCTTCEEEEEEETTEEEE
T ss_pred ---CcEEEEEEEecCCC--EEEEEEEeCCCCCCCceEEEEEeCCceec
Confidence 899888 22121 25667778998888777889999988743
No 70
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.32 E-value=2e-12 Score=111.04 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=83.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCC----C-----CCCcccc---c--c------------ch
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGG----D-----GDIPHSA---I--G------------TA 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~----~-----~~~~~~~---~--~------------~~ 81 (241)
+++|+||||+|||||++++++.+.+..|.+|+++. .+.... . ....... + + ..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~-~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 115 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM-LEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL 115 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE-SSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe-CcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence 89999999999999999999999877566788876 222100 0 0000000 0 0 00
Q ss_pred ---hhcCCCC--Cccc----HHHHHHHHHhcCCcEEEEcCCCCHH------hH-HH-------HHH-HHhCCcEEEEeec
Q 026207 82 ---RRMQVPE--PSLQ----HKVMIEAVENHMPEVIIVDEIGTEA------EA-HA-------CRS-IAERGVMLIGTAH 137 (241)
Q Consensus 82 ---~~~~~~~--~~~~----~~~~~~~~l~~~p~vlilDE~~~~~------d~-~~-------~~~-~~~~g~~vi~t~H 137 (241)
..+.+.+ .... ...+.+.++.++|++||+|||+... +. .. +.. +++.|++||+++|
T Consensus 116 l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh 195 (296)
T 1cr0_A 116 FGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 195 (296)
T ss_dssp HSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 0011111 1111 1222255578899999999999832 22 11 112 3456999999999
Q ss_pred CCChhh-----hhcCC---------ccccccccccEEEe---CChH-HHHHHHHHhhhccC-CCCCce
Q 026207 138 GEWLEN-----IIKNP---------ILSDLIGGVDTVTL---GDEE-ARARRCQKSILERK-APPTFY 186 (241)
Q Consensus 138 ~~~~~~-----~~~~p---------~l~~l~~~~d~V~~---~~~~-~~~~~~~~~~k~r~-g~~~~~ 186 (241)
.....+ .-.+| .++++ ||.|++ ++.. ....+.+...|+|+ |+....
T Consensus 196 ~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~---aD~vi~L~~~~~~~~~~~~~l~i~K~R~~g~~g~~ 260 (296)
T 1cr0_A 196 LKNPDKGKAHEEGRPVSITDLRGSGALRQL---SDTIIALERNQQGDMPNLVLVRILKCRFTGDTGIA 260 (296)
T ss_dssp CC-----------------CCC---CHHHH---CSEEEEEEEC-------CEEEEEEEETTTCCCEEE
T ss_pred cCccccccccccCCCCCHHHhcccHHhHhh---CcEEEEEecCcccCCCCeEEEEEEccccCCCCCce
Confidence 973121 11223 34555 999988 3321 11114566778996 876643
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.32 E-value=1.7e-12 Score=104.04 Aligned_cols=110 Identities=19% Similarity=0.083 Sum_probs=64.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC-CCeEEEEcCCcccCCC-CCCcc------ccccc---------hhhcCCCCCc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF-QKRVVIVDTSNEIGGD-GDIPH------SAIGT---------ARRMQVPEPS 90 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~-g~~v~~i~~~~e~~~~-~~~~~------~~~~~---------~~~~~~~~~~ 90 (241)
.++|+||||||||||++.+++.+.-.. |...-..... +.... +..++ ..+.. ......+|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~-~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP-ETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccc-cccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHH
Confidence 478999999999999999999874210 1000000000 00000 00000 00000 0112224557
Q ss_pred ccHHHHHHHH-----HhcCCcEEEEcC--CCCHHhHHHHH---HH-HhCCcEEEEeecC
Q 026207 91 LQHKVMIEAV-----ENHMPEVIIVDE--IGTEAEAHACR---SI-AERGVMLIGTAHG 138 (241)
Q Consensus 91 ~~~~~~~~~~-----l~~~p~vlilDE--~~~~~d~~~~~---~~-~~~g~~vi~t~H~ 138 (241)
++++..++.+ +..+|+++++|| |++.+|+.... .. .+.+.++++++|.
T Consensus 81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~ 139 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPI 139 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 7899999886 899999999999 99999885433 32 2346668888873
No 72
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.32 E-value=2.2e-12 Score=114.05 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=98.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC------CcccHHHHHHH--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE------PSLQHKVMIEA-- 99 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-- 99 (241)
+++|+||||||||||+.+++..+.+. +.+++|++ .++.... . ++.++.+.. .....+..+..
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId-~E~s~~~------~--ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFID-AEHALDP------V--YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSCCCCH------H--HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEe-cccccch------H--HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 89999999999999999999988765 56889998 4443211 0 112222211 11122222222
Q ss_pred --HHhcCCcEEEEcCCCCHHh----------------HHHH--------HHHHhCCcEEEEeecCCChhhh-hcC-----
Q 026207 100 --VENHMPEVIIVDEIGTEAE----------------AHAC--------RSIAERGVMLIGTAHGEWLENI-IKN----- 147 (241)
Q Consensus 100 --~l~~~p~vlilDE~~~~~d----------------~~~~--------~~~~~~g~~vi~t~H~~~~~~~-~~~----- 147 (241)
+....|+++++|+++.... +..+ ..+.+.|+++|++.|..+-.+. +..
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~ 212 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTT 212 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCT
T ss_pred HHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCC
Confidence 2236799999999876543 1111 1345679999999998432332 211
Q ss_pred -C-ccccccccccEEEe-C--------ChHHHHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 148 -P-ILSDLIGGVDTVTL-G--------DEEARARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 148 -p-~l~~l~~~~d~V~~-~--------~~~~~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
+ .++|+ +|.++. . +......+.++.+||+++++.....|+|. +.|+
T Consensus 213 GG~~l~h~---~~~rl~l~k~~~~k~g~~~~g~~~~vkvvKnr~~~~~~~~~f~i~~~~Gi 270 (356)
T 3hr8_A 213 GGLALKFY---ATMRMEVRRGEPIKEGKDVIGNVISVKIVKNKVAPPFKTAQTYIIYGKGI 270 (356)
T ss_dssp HHHHHHHH---CSEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCCEEEEEEETTTBS
T ss_pred Ccchhhhh---CcEEEEEEeccccccCCcccccEEEEEEEeCCCCCCCceEEEEEeeCCCc
Confidence 2 36677 888776 2 11111126678899999999999999995 7776
No 73
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.31 E-value=4.7e-12 Score=120.69 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCCCCcccHHHHHHHHHhcCCc--EEEEcCCCCHHhHHH-------HHHHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p~--vlilDE~~~~~d~~~-------~~~~~~~g~~vi~t~H~~~ 140 (241)
..+|++++|++.+++++.++|+ ++++|||++++|+.. +...++.|.++|+++|..+
T Consensus 201 ~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 265 (670)
T 3ux8_A 201 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 265 (670)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3467789999999999999988 999999999999832 2344556999999999875
No 74
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.31 E-value=1.2e-12 Score=132.95 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=82.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCC----------CCCcccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGD----------GDIPHSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~----------~~~~~~~-- 77 (241)
.++|+||+|||||||++.|++.+.+..|. ++.|+.+..-+... .......
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~ 525 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMV 525 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHH
T ss_pred EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHH
Confidence 79999999999999999999999887443 23444432221110 0000000
Q ss_pred -----------c-----cchhhc----CCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHH---HH---HHHhCCcE
Q 026207 78 -----------I-----GTARRM----QVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHA---CR---SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~~~~----~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~---~~---~~~~~g~~ 131 (241)
+ |....+ ..+|+|++||..+++++..+|+++++|||++.+|++. +. .....|+|
T Consensus 526 ~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T 605 (1321)
T 4f4c_A 526 AACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRT 605 (1321)
T ss_dssp HHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSE
T ss_pred HHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCE
Confidence 0 000001 1256678999999999999999999999999999832 11 22346899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+.+ ||.|+.
T Consensus 606 ~iiiaHrls--------~i~~----aD~Iiv 624 (1321)
T 4f4c_A 606 TIIIAHRLS--------TIRN----ADLIIS 624 (1321)
T ss_dssp EEEECSCTT--------TTTT----CSEEEE
T ss_pred EEEEcccHH--------HHHh----CCEEEE
Confidence 999999886 4433 688887
No 75
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.27 E-value=7.5e-12 Score=112.33 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=94.3
Q ss_pred cEEEEEeCCCchHHHHHHHHH--Hhcccc---CCCeEEEEcCCcccCCCCCCccccccchhhcCC-------------CC
Q 026207 27 DFFLSYFRPGVGKTTVMREIA--RVLSDE---FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-------------PE 88 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~--~~l~~~---~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~-------------~~ 88 (241)
.+++|+||||||||||+++++ ...++. .+.+++|++ .++... +......+.++.. ..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid-~E~~~~----~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID-TEGTFR----PVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE-SSSCCC----HHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe-CCCccC----HHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 389999999999999999765 444332 236789998 443211 0000000111111 01
Q ss_pred CcccHHH----HHHHHHhcCCcEEEEcCCCCHHhHH-------------------HHH-HHHhCCcEEEEeecCCChh-h
Q 026207 89 PSLQHKV----MIEAVENHMPEVIIVDEIGTEAEAH-------------------ACR-SIAERGVMLIGTAHGEWLE-N 143 (241)
Q Consensus 89 ~~~~~~~----~~~~~l~~~p~vlilDE~~~~~d~~-------------------~~~-~~~~~g~~vi~t~H~~~~~-~ 143 (241)
....+.. +.+.+...+|+++++||+++.++.. .+. .+++.|+++|++.|..... +
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g 333 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDG 333 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCc
Confidence 1111122 2233445789999999998765431 111 3445699999999984322 2
Q ss_pred --hhc-------C-CccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 144 --IIK-------N-PILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 144 --~~~-------~-p~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
.+. . ..++++ +|.+++ +++. .|.++.+|+|+++... ..|+|++.|+.
T Consensus 334 ~~~~~g~~~~p~gg~~l~~~---ad~vl~L~~~~g~---~R~l~v~K~R~~p~~e-~~F~It~~Gi~ 393 (400)
T 3lda_A 334 GMAFNPDPKKPIGGNIMAYS---STTRLGFKKGKGC---QRLCKVVDSPCLPEAE-CVFAIYEDGVG 393 (400)
T ss_dssp --------------CHHHHH---CSEEEEEEECSTT---EEEEEEEECSSSCSCE-EEEEEETTEEE
T ss_pred cccccCCCccCCchhHHHHh---cceEEEEEecCCC---cEEEEEEcCCCCCCCc-eEEEEeCCccc
Confidence 111 1 245677 899887 4332 2778889999999886 89999999983
No 76
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.27 E-value=2.1e-12 Score=130.82 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=82.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCC--------C----Ccccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDG--------D----IPHSA 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~--------~----~~~~~ 77 (241)
.+.|+||||||||||++.|++...+..|. ++.++.+...+.... . .....
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~ 1140 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE 1140 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHH
Confidence 79999999999999999999999876332 234444322111000 0 00000
Q ss_pred c------------------cchh----hcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCC
Q 026207 78 I------------------GTAR----RMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERG 129 (241)
Q Consensus 78 ~------------------~~~~----~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g 129 (241)
+ +.-. +-..+|+|.+|+..+++++..+|+++++|||++++|+.... .....|
T Consensus 1141 i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~ 1220 (1284)
T 3g5u_A 1141 IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG 1220 (1284)
T ss_dssp HHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCC
Confidence 0 0000 01235678899999999999999999999999999995332 223458
Q ss_pred cEEEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 130 VMLIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 130 ~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|+|+++|..+ .+ .. ||+|+.
T Consensus 1221 ~tvi~isH~l~--------~i-~~---~dri~v 1241 (1284)
T 3g5u_A 1221 RTCIVIAHRLS--------TI-QN---ADLIVV 1241 (1284)
T ss_dssp SCEEEECSCTT--------GG-GS---CSEEEE
T ss_pred CEEEEEecCHH--------HH-Hc---CCEEEE
Confidence 99999999987 33 22 788887
No 77
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.25 E-value=2.6e-12 Score=130.18 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=82.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC------------------eEEEEcCCcccCCCCC----------Ccccc--
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK------------------RVVIVDTSNEIGGDGD----------IPHSA-- 77 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------------------~v~~i~~~~e~~~~~~----------~~~~~-- 77 (241)
.+.|+||||||||||++.|++.+.++.|. ++.++.+...+..... .....
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~ 497 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIE 497 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHH
Confidence 79999999999999999999999887432 1334433221111000 00000
Q ss_pred -----------c-----cch----hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHH------HHHhCCcE
Q 026207 78 -----------I-----GTA----RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACR------SIAERGVM 131 (241)
Q Consensus 78 -----------~-----~~~----~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~------~~~~~g~~ 131 (241)
+ +.. .+-..+|+|++|+..+++++..+|+++++|||++.+|++... .....|+|
T Consensus 498 ~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 577 (1284)
T 3g5u_A 498 KAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRT 577 (1284)
T ss_dssp HHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 0 000 001135678899999999999999999999999999995432 22346899
Q ss_pred EEEeecCCChhhhhcCCccccccccccEEEe
Q 026207 132 LIGTAHGEWLENIIKNPILSDLIGGVDTVTL 162 (241)
Q Consensus 132 vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~~ 162 (241)
+|.++|..+ .+. - ||+|+.
T Consensus 578 ~i~itH~l~--------~i~-~---~d~i~v 596 (1284)
T 3g5u_A 578 TIVIAHRLS--------TVR-N---ADVIAG 596 (1284)
T ss_dssp EEEECSCHH--------HHT-T---CSEEEE
T ss_pred EEEEecCHH--------HHH-c---CCEEEE
Confidence 999999875 332 2 688877
No 78
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.24 E-value=1.9e-12 Score=106.28 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=67.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEE-EEc-CCcccCCC-CCCcccc---c-cch----hh------------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVV-IVD-TSNEIGGD-GDIPHSA---I-GTA----RR------------ 83 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~-~i~-~~~e~~~~-~~~~~~~---~-~~~----~~------------ 83 (241)
.++.|+||||||||||++.+++. +++.|.--. .+. ...+.... +.+++.. + ... ..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~~~~~ 101 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPEVIPK 101 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 38999999999999999999999 877553111 011 01111111 2222211 1 000 00
Q ss_pred -cCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhHHHHHHHH---hCCcEEEEeecCCC
Q 026207 84 -MQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEAHACRSIA---ERGVMLIGTAHGEW 140 (241)
Q Consensus 84 -~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~~~~~~---~~g~~vi~t~H~~~ 140 (241)
+.. .-+++|+..+++++..+|+++++|||+++ ....+.... ..|.++| ++|..+
T Consensus 102 ~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~ 159 (208)
T 3b85_A 102 LMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDIT 159 (208)
T ss_dssp HHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC--
T ss_pred HHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHH
Confidence 001 22778888999999999999999999998 444443322 3588899 999876
No 79
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.24 E-value=1e-11 Score=110.21 Aligned_cols=55 Identities=7% Similarity=0.002 Sum_probs=45.1
Q ss_pred CCCCcccHHHHHHHHHh------cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 86 VPEPSLQHKVMIEAVEN------HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~------~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.+|+|++++..++.++. .+|+++++|||++++|+.... .....|.++++++|...
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~ 346 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE 346 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 46778899999988887 799999999999999995443 23446899999999875
No 80
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.23 E-value=3.9e-11 Score=106.29 Aligned_cols=114 Identities=14% Similarity=0.165 Sum_probs=76.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchh-hcCCC--CCcccHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTAR-RMQVP--EPSLQHKVMIEAVENH 103 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~ 103 (241)
.+++|+||||||||||++++++.+++. ...+++++..++.... .....+... +-... ....+++..++.++++
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~--~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPD--HPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTT--CSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccc--cCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence 389999999999999999999999877 4557787555443210 011111111 11111 1456888999999999
Q ss_pred CCcEEEEcCCCCHHhHHHHHHHHhCCcE-EEEeecCCChhhhh
Q 026207 104 MPEVIIVDEIGTEAEAHACRSIAERGVM-LIGTAHGEWLENII 145 (241)
Q Consensus 104 ~p~vlilDE~~~~~d~~~~~~~~~~g~~-vi~t~H~~~~~~~~ 145 (241)
+|+.+++||++...... ...+...|+. +++++|.++..+..
T Consensus 252 ~pd~~l~~e~r~~~~~~-~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 252 KPTRILLAELRGGEAYD-FINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCSEEEESCCCSTHHHH-HHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred CCCEEEEcCchHHHHHH-HHHHHhcCCCeEEEEECCCCHHHHH
Confidence 99999999999764333 4445566764 79999999855544
No 81
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.22 E-value=1.7e-11 Score=116.74 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=46.1
Q ss_pred CCCCCcccHHHHHHHHHhcCC---cEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p---~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
..+|+|++|++.+++++.++| +++++|||++++|+... ....+.|.++|+++|..+
T Consensus 542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~ 607 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD 607 (670)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 346778999999999998876 59999999999998433 244456999999999885
No 82
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.20 E-value=1.2e-11 Score=110.98 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=44.3
Q ss_pred CCCcccHHHHHHHHHhcCC--cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p--~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
.|+|++++..++.++..+| +++|+|||++++|+.... ... .|.++|+++|...
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~ 357 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ 357 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH
Confidence 5778999999999999999 999999999999995443 222 4899999999853
No 83
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.12 E-value=1e-10 Score=90.95 Aligned_cols=84 Identities=13% Similarity=0.145 Sum_probs=59.2
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
....++|+||||+|||||++++++.+.+. |.++++++ ..++... .+..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~-~~~~~~~-----------------------------~~~~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYID-AASMPLT-----------------------------DAAFE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEE-TTTSCCC-----------------------------GGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEc-HHHhhHH-----------------------------HHHhC
Confidence 44589999999999999999999988764 67788887 4443110 12357
Q ss_pred CcEEEEcCCCCHHhHH--H----HHHHHhCCcE-EEEeecCC
Q 026207 105 PEVIIVDEIGTEAEAH--A----CRSIAERGVM-LIGTAHGE 139 (241)
Q Consensus 105 p~vlilDE~~~~~d~~--~----~~~~~~~g~~-vi~t~H~~ 139 (241)
|+++++||++...+.. . +....+.|.+ +|+|+|..
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 9999999998754321 1 1233455776 78888854
No 84
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.09 E-value=6.5e-11 Score=114.81 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=52.1
Q ss_pred CCCCcccHHHHHHHHHhcC---CcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHM---PEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIG 155 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~---p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~ 155 (241)
.+|+|++|+..++.++..+ |+++|+|||++++|+.... ...+.|.+||+++|..+ .+ ..
T Consensus 730 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~--------~i-~~-- 798 (842)
T 2vf7_A 730 ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ--------VV-AA-- 798 (842)
T ss_dssp GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--------HH-TT--
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--------HH-Hh--
Confidence 3566789999999999986 7999999999999884332 34567999999999875 44 45
Q ss_pred cccEEEe
Q 026207 156 GVDTVTL 162 (241)
Q Consensus 156 ~~d~V~~ 162 (241)
||+|+.
T Consensus 799 -aDrii~ 804 (842)
T 2vf7_A 799 -SDWVLD 804 (842)
T ss_dssp -CSEEEE
T ss_pred -CCEEEE
Confidence 888876
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.09 E-value=8e-11 Score=93.61 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=60.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+|||||++++++.+.+..|..+++++ ..++.. .... ... ..... ..+.. ..+|+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-~~~~~~------~~~~---~~~--~~~~~--~~~~~--~~~~~ 102 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-TKDLIF------RLKH---LMD--EGKDT--KFLKT--VLNSP 102 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-HHHHHH------HHHH---HHH--HTCCS--HHHHH--HHTCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-HHHHHH------HHHH---Hhc--CchHH--HHHHH--hcCCC
Confidence 479999999999999999999998755566667765 332210 0000 000 00011 12222 24899
Q ss_pred EEEEcCCCC-HHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 107 VIIVDEIGT-EAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 107 vlilDE~~~-~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
++|+|||+. ..|+... ....+.|.++|+|+|...
T Consensus 103 llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 103 VLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp EEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred EEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 999999984 4444221 133446888888888774
No 86
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.06 E-value=7.1e-10 Score=94.38 Aligned_cols=169 Identities=11% Similarity=0.052 Sum_probs=85.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc---------CCCeEEEEcCCcccCCC--------CCCccc-cc-cchhhc---
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE---------FQKRVVIVDTSNEIGGD--------GDIPHS-AI-GTARRM--- 84 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~---------~g~~v~~i~~~~e~~~~--------~~~~~~-~~-~~~~~~--- 84 (241)
.+++|+||||||||||++++++.+... .+.+++|++ .++.... +..... .. .....+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~-~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l~l~ 109 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLP-AEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQ 109 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEE-SSSCHHHHHHHHHHHHTTSCHHHHHHHHHHEEEC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEE-CCCCHHHHHHHHHHHHhhcChhhhhhccCceEEe
Confidence 389999999999999999999876542 125677876 3332100 000000 00 000011
Q ss_pred -------CCCCCcccHHHHHHHHHhcCCcEEEEcCCCC--HHhH------H----HHHH-HHhCCcEEEEeecCCChhhh
Q 026207 85 -------QVPEPSLQHKVMIEAVENHMPEVIIVDEIGT--EAEA------H----ACRS-IAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 85 -------~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~--~~d~------~----~~~~-~~~~g~~vi~t~H~~~~~~~ 144 (241)
..++.+. ...+ .++..+|++||||||++ ..|. . .+.. +++.|+++|+++|..+....
T Consensus 110 ~~~~~~~~~ls~g~--~~~i-~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~ 186 (279)
T 1nlf_A 110 PLIGSLPNIMAPEW--FDGL-KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAM 186 (279)
T ss_dssp CCTTSCCCTTSHHH--HHHH-HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred ecCCCCcccCCHHH--HHHH-HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 1112221 1222 23445899999999998 4443 1 1122 34669999999998863211
Q ss_pred hc-CC------ccccccccccEEEe----CChHHH-------HH-HH--HHhhhccCCCCCceEEEEEEcCceEEe
Q 026207 145 IK-NP------ILSDLIGGVDTVTL----GDEEAR-------AR-RC--QKSILERKAPPTFYFLIEMRERHYWVT 199 (241)
Q Consensus 145 ~~-~p------~l~~l~~~~d~V~~----~~~~~~-------~~-~~--~~~~k~r~g~~~~~~~fe~~~~g~~~~ 199 (241)
.. ++ ....+...+..+.+ ++.... .+ .. +...|+|++++.-...|+..+.|.+..
T Consensus 187 ~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~v~K~~~~~~~~~~~~~~~~~G~l~~ 262 (279)
T 1nlf_A 187 MGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGVSKANYGAPFADRWFRRHDGGVLKP 262 (279)
T ss_dssp --------------CTGGGCSCEEEEEECCHHHHHHTTCCTTSGGGEEEEEEEECSSSSCCCCEEEEECGGGCEEE
T ss_pred cCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCCChhhcCcEEEeeeccccCCCCCCceEEEEcCCeeEec
Confidence 11 11 11223112322222 211110 00 11 234689999888777788888888654
No 87
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.03 E-value=1.9e-10 Score=95.30 Aligned_cols=167 Identities=18% Similarity=0.106 Sum_probs=93.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC--------CCCcccc--ccchhhcC------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD--------GDIPHSA--IGTARRMQ------------ 85 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~--------~~~~~~~--~~~~~~~~------------ 85 (241)
+++|.|+||+||||++.+++.......+.+++|++ .++.... ....... .+......
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s-~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 110 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT-LEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEE 110 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE-SSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec-ccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhcccch
Confidence 89999999999999999887643323356788887 3322100 0000000 00000000
Q ss_pred --CCCCcc----cHHHHHHHHHhcCCcEEEEcCCCCHHhH------------HHHHHHHhCCcEEEEeecCCChhh-hhc
Q 026207 86 --VPEPSL----QHKVMIEAVENHMPEVIIVDEIGTEAEA------------HACRSIAERGVMLIGTAHGEWLEN-IIK 146 (241)
Q Consensus 86 --~~~~~~----~~~~~~~~~l~~~p~vlilDE~~~~~d~------------~~~~~~~~~g~~vi~t~H~~~~~~-~~~ 146 (241)
...... ........+...+|+++++|.++..... .....+++.|++++.+.|...... .+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~ 190 (251)
T 2zts_A 111 KFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLS 190 (251)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSS
T ss_pred hccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccc
Confidence 000011 1223334555679999999997654322 112256677999999999875222 233
Q ss_pred CC-ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCC-ceEEEEEEcCceEE
Q 026207 147 NP-ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPT-FYFLIEMRERHYWV 198 (241)
Q Consensus 147 ~p-~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~-~~~~fe~~~~g~~~ 198 (241)
.+ ..+++ +|.|+. .+......|.++..|+|.++.. -...|++++.|+.+
T Consensus 191 ~~~~~~~~---aD~vi~l~~~~~~~~~~R~l~I~K~R~~~~~~~~~~f~It~~Gi~v 244 (251)
T 2zts_A 191 RYGIEEFI---ARGVIVLDLQEKNIELKRYVLIRKMRETRHSMKKYPFEIGPNGIVV 244 (251)
T ss_dssp SSSCGGGG---CSEEEEEEEEECSSSEEEEEEEEEETTCCCCCBEEEEEEETTEEEE
T ss_pred cCCceeEE---eeEEEEEEEEecCCeEEEEEEEEEcCCCCCCCEEEEEEEeCCcEEE
Confidence 34 45667 888876 1111111256777899977643 44569999999844
No 88
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.02 E-value=1.2e-09 Score=95.90 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=46.4
Q ss_pred CCCcccH------HHHHHHHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccc
Q 026207 87 PEPSLQH------KVMIEAVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDL 153 (241)
Q Consensus 87 ~~~~~~~------~~~~~~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l 153 (241)
+|+|+++ +.+++.++..+|+++++|||++++|+.... .....|.++++++|... +.++
T Consensus 249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~---------~~~~ 319 (339)
T 3qkt_A 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE---------LKDA 319 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG---------GGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH---------HHHh
Confidence 4556666 456667777899999999999999995432 23445789999999843 4455
Q ss_pred cccccEEEe
Q 026207 154 IGGVDTVTL 162 (241)
Q Consensus 154 ~~~~d~V~~ 162 (241)
||+++.
T Consensus 320 ---~d~~~~ 325 (339)
T 3qkt_A 320 ---ADHVIR 325 (339)
T ss_dssp ---CSEEEE
T ss_pred ---CCEEEE
Confidence 787775
No 89
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.98 E-value=6.2e-10 Score=92.21 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=74.7
Q ss_pred cceeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCC---cccHHHHH
Q 026207 21 INKIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEP---SLQHKVMI 97 (241)
Q Consensus 21 ~~~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 97 (241)
.......+++++||+|+||||++..++...... |.+++++....+..+...+. .+++.... -.....++
T Consensus 7 ~~~~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~d~r~~~~i~-------srlG~~~~~~~~~~~~~i~ 78 (223)
T 2b8t_A 7 FSKKIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKIDTRSIRNIQ-------SRTGTSLPSVEVESAPEIL 78 (223)
T ss_dssp ----CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCCGGGCSSCC-------CCCCCSSCCEEESSTHHHH
T ss_pred hccCCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEeccCchHHHHHH-------HhcCCCccccccCCHHHHH
Confidence 334456799999999999999999999887655 67888874221111111111 11111000 11223344
Q ss_pred HHHHh----cCCcEEEEcCCCCHHh--HHHHHHHHhCCcEEEEeecCCChhhhhcC--CccccccccccEEEe
Q 026207 98 EAVEN----HMPEVIIVDEIGTEAE--AHACRSIAERGVMLIGTAHGEWLENIIKN--PILSDLIGGVDTVTL 162 (241)
Q Consensus 98 ~~~l~----~~p~vlilDE~~~~~d--~~~~~~~~~~g~~vi~t~H~~~~~~~~~~--p~l~~l~~~~d~V~~ 162 (241)
+.+.. .+|++|+|||++.... .+.+....+.|+.++.+.|..+..+..-. +.+..+ +|.|.-
T Consensus 79 ~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~l---AD~V~e 148 (223)
T 2b8t_A 79 NYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTY---ADKITK 148 (223)
T ss_dssp HHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHH---CSEEEE
T ss_pred HHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHH---hheEee
Confidence 44433 3589999999986421 23445555679999999997774433111 134444 777763
No 90
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.97 E-value=2.6e-10 Score=104.10 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=71.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccc---------------cccc-----------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHS---------------AIGT----------- 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~---------------~~~~----------- 80 (241)
.+++|+||||||||||++.|++...+..|.+.++++.... ..-..+++. ..+.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~-~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~ 217 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQ-QPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHN 217 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTT-SCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCcc-CCeeeeccchhhcccccccchhhhhcccccccCcchHHH
Confidence 4899999999999999999999998775513133331000 000000000 0000
Q ss_pred ----hhhc--------CCCCCcccHHHHHHHH--HhcCCcE----EEEcC-CCCHHhHH--HHHH-HHhCCcEEEEeecC
Q 026207 81 ----ARRM--------QVPEPSLQHKVMIEAV--ENHMPEV----IIVDE-IGTEAEAH--ACRS-IAERGVMLIGTAHG 138 (241)
Q Consensus 81 ----~~~~--------~~~~~~~~~~~~~~~~--l~~~p~v----lilDE-~~~~~d~~--~~~~-~~~~g~~vi~t~H~ 138 (241)
...+ ..++++++++..++++ +..+|++ +|+|| |++.+|+. .+.. ....+.++++++|.
T Consensus 218 ~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVth~ 297 (460)
T 2npi_A 218 KQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCS 297 (460)
T ss_dssp BCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEEcc
Confidence 0000 1123356899999999 9999999 99999 99988763 2222 23447888888898
Q ss_pred CC
Q 026207 139 EW 140 (241)
Q Consensus 139 ~~ 140 (241)
.+
T Consensus 298 ~~ 299 (460)
T 2npi_A 298 ET 299 (460)
T ss_dssp SS
T ss_pred Cc
Confidence 65
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.95 E-value=9.1e-10 Score=107.55 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=51.0
Q ss_pred CCCCcccHHHHHHHHHhcCC---cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIG 155 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p---~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~ 155 (241)
.+|+|++|+..++.++..+| +++|+|||++++|+.... ...+.|.+||+++|..+ .+ ..
T Consensus 845 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--------~i-~~-- 913 (972)
T 2r6f_A 845 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--------VI-KT-- 913 (972)
T ss_dssp GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--------HH-TT--
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--------HH-Hh--
Confidence 35667899999999999764 999999999999985432 34457999999999875 22 24
Q ss_pred cccEEEe
Q 026207 156 GVDTVTL 162 (241)
Q Consensus 156 ~~d~V~~ 162 (241)
||+|+.
T Consensus 914 -aDrIiv 919 (972)
T 2r6f_A 914 -ADYIID 919 (972)
T ss_dssp -CSEEEE
T ss_pred -CCEEEE
Confidence 788776
No 92
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.94 E-value=3.8e-09 Score=103.31 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=51.5
Q ss_pred CCCCCcccHHHHHHHHHhcCC---cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCcccccc
Q 026207 85 QVPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLI 154 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p---~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~ 154 (241)
..+|+|++|+..+++++..+| +++|+|||++++|+.... ...+.|.++|+++|..+ .+. .
T Consensus 804 ~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--------~i~-~- 873 (916)
T 3pih_A 804 TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--------VIK-N- 873 (916)
T ss_dssp TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--------HHT-T-
T ss_pred cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--------HHH-h-
Confidence 346778999999999998765 799999999999984432 34557999999999885 222 2
Q ss_pred ccccEEEe
Q 026207 155 GGVDTVTL 162 (241)
Q Consensus 155 ~~~d~V~~ 162 (241)
||+|+.
T Consensus 874 --ADrIiv 879 (916)
T 3pih_A 874 --ADHIID 879 (916)
T ss_dssp --CSEEEE
T ss_pred --CCEEEE
Confidence 788876
No 93
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.93 E-value=6.5e-09 Score=91.34 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=91.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc-c----CCCeEEEEcCCcccCCCCCCccccccchhhcCC-----------C--CC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD-E----FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-----------P--EP 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~-~----~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~-----------~--~~ 89 (241)
+++|+||||+|||||+..++..... . .+.+++|++ .++... +.....++.++.. . ..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~-~E~~~~----~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID-TENTFR----PDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE-SSSCCC----HHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE-CCCCCC----HHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 7999999999999999999986422 1 256899998 333211 1100000111111 0 01
Q ss_pred cccHHHH----HHHHHh--cCCcEEEEcCCCCHHhHH----------H--H--------HHHHhCCcEEEEeecCCChhh
Q 026207 90 SLQHKVM----IEAVEN--HMPEVIIVDEIGTEAEAH----------A--C--------RSIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 90 ~~~~~~~----~~~~l~--~~p~vlilDE~~~~~d~~----------~--~--------~~~~~~g~~vi~t~H~~~~~~ 143 (241)
...+..+ ...+.. .++++||||+++...... . . ..+.+.|+++|++.|..+-.+
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~ 278 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPG 278 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCC
Confidence 1111111 223333 679999999998765331 0 1 134567999999999875322
Q ss_pred h---h----cCC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCceE
Q 026207 144 I---I----KNP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHYW 197 (241)
Q Consensus 144 ~---~----~~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~~ 197 (241)
. + ..| .+++. +|.+++ .++. .+.++..|++.++... ..|++++.|+.
T Consensus 279 ~~~~~~g~~~~~~gg~~i~~~---ad~~l~l~r~~~~---~r~~~v~K~r~~p~~~-~~f~I~~~Gi~ 339 (343)
T 1v5w_A 279 ATMTFQADPKKPIGGHILAHA---STTRISLRKGRGE---LRIAKIYDSPEMPENE-ATFAITAGGIG 339 (343)
T ss_dssp --------------CCTTTTS---SSEEEEEEESSTT---EEEEEEEECTTCCSSC-EEEEEETTEEE
T ss_pred CccccCCCCCcCCchHHHHHh---CCEEEEEEEcCCC---EEEEEEEECCCCCCee-EEEEEeCCCcc
Confidence 1 2 112 35566 888887 3322 2567778899886554 58999998874
No 94
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.92 E-value=7.5e-09 Score=90.03 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=41.3
Q ss_pred CCCcccHHHHHHHHHh----cCCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~----~~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~~ 140 (241)
+|.+++++..++.++. .+|+++++|||++.+|+.... .....|.++|+++|...
T Consensus 220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~ 283 (322)
T 1e69_A 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI 283 (322)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH
Confidence 4556788899998886 578999999999999995432 11234788999999854
No 95
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.92 E-value=7.2e-11 Score=106.27 Aligned_cols=115 Identities=11% Similarity=0.019 Sum_probs=68.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCC------eE---EEEcCCcccCC-----C-CC-Ccccccc-chh------
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQK------RV---VIVDTSNEIGG-----D-GD-IPHSAIG-TAR------ 82 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~------~v---~~i~~~~e~~~-----~-~~-~~~~~~~-~~~------ 82 (241)
.+++.|+||||||||||+++|++...++.|. .+ .++.+...... . +. ....... ...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 3489999999999999999999988766332 10 11111110000 0 00 0000000 000
Q ss_pred --hcCCCCCc--ccHHHHHHHHHhc----------CCcEEEEcCCCCHHhHH-------HHHHH-----HhC----CcEE
Q 026207 83 --RMQVPEPS--LQHKVMIEAVENH----------MPEVIIVDEIGTEAEAH-------ACRSI-----AER----GVML 132 (241)
Q Consensus 83 --~~~~~~~~--~~~~~~~~~~l~~----------~p~vlilDE~~~~~d~~-------~~~~~-----~~~----g~~v 132 (241)
.....+.+ ++++..++.++.+ +|+++++|||++++|+. .+... .+. ..++
T Consensus 149 ~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~ii 228 (413)
T 1tq4_A 149 YDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIF 228 (413)
T ss_dssp CSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEE
T ss_pred cCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 01113445 8899999999988 99999999999998872 11222 122 2568
Q ss_pred EEeecCCC
Q 026207 133 IGTAHGEW 140 (241)
Q Consensus 133 i~t~H~~~ 140 (241)
++++|..+
T Consensus 229 liSsh~l~ 236 (413)
T 1tq4_A 229 LLSNKNVC 236 (413)
T ss_dssp ECCTTCTT
T ss_pred EEecCcCC
Confidence 88999776
No 96
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.92 E-value=7.6e-10 Score=97.61 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=89.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC------CcccHHHH---H
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE------PSLQHKVM---I 97 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~ 97 (241)
.+++|.||||+|||||+.+++...... +.+++|++ .++.... . ++.++.... .....+.. +
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~-~E~~~~~------~--~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFID-AEHALDP------E--YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSCCCCH------H--HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEE-CCCCcCH------H--HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 389999999999999999999877654 57899998 3332110 0 011111110 00112222 2
Q ss_pred H-HHHhcCCcEEEEcCCCCHH----------hH----H--H----HH----HHHhCCcEEEEeecCCChhhh-hcCC---
Q 026207 98 E-AVENHMPEVIIVDEIGTEA----------EA----H--A----CR----SIAERGVMLIGTAHGEWLENI-IKNP--- 148 (241)
Q Consensus 98 ~-~~l~~~p~vlilDE~~~~~----------d~----~--~----~~----~~~~~g~~vi~t~H~~~~~~~-~~~p--- 148 (241)
. .+...+|+++|+||++... |. . . +. .+++.|+++|++.|...-.+. +.+|
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~ 211 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETT 211 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CC
T ss_pred HHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCccc
Confidence 2 2224579999999998764 11 1 1 11 235679999999998752222 1122
Q ss_pred ----ccccccccccEEEe---CC----hHH--HHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 149 ----ILSDLIGGVDTVTL---GD----EEA--RARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 149 ----~l~~l~~~~d~V~~---~~----~~~--~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
.+++. ||.++. ++ +.. ...+.++..|++.+|+.-...|++. +.|+
T Consensus 212 ~gg~~l~~~---ad~~l~lrr~~~~k~g~~~~g~~~~~~i~K~~~~p~~~~~~fdi~~~~Gi 270 (349)
T 2zr9_A 212 TGGKALKFY---ASVRLDVRRIETLKDGTDAVGNRTRVKVVKNKVSPPFKQAEFDILYGQGI 270 (349)
T ss_dssp SSHHHHHHH---CSEEEEEEEEEEECSSSSCCEEEEEEEEEEESSSCCCCEEEEEEETTSCB
T ss_pred CCchHhhhc---cceEEEEEEeeeeecCccccCCEEEEEeCCCccCCCCceEEEEEEeCCCc
Confidence 24555 776665 21 110 0114566778998887777778874 6666
No 97
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.92 E-value=4e-09 Score=91.88 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=85.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEcCCcccCCCCCCccccccchhhcCC-----------CC--C
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-----------PE--P 89 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~-----------~~--~ 89 (241)
+++|+||||+|||||+.+++...... .+.+++|++ .++... +.....++.++.. .. .
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~-~e~~~~----~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID-TEGTFR----WERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE-SSSCCC----HHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE-CCCCCC----HHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 89999999999999999999875321 146899998 333210 0100000111111 00 0
Q ss_pred cccHH----HHHHHHHh-cCCcEEEEcCCCCHHhHH------------HH--------HHHHhCCcEEEEeecCCChhhh
Q 026207 90 SLQHK----VMIEAVEN-HMPEVIIVDEIGTEAEAH------------AC--------RSIAERGVMLIGTAHGEWLENI 144 (241)
Q Consensus 90 ~~~~~----~~~~~~l~-~~p~vlilDE~~~~~d~~------------~~--------~~~~~~g~~vi~t~H~~~~~~~ 144 (241)
...+. .+.+.+.. .+|++||+|+++...... .+ ..+.+.|++++++.|..+-.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~ 263 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDM 263 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCC
Confidence 11111 12223333 689999999998764320 01 1345569999999998753221
Q ss_pred -h---cCC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 145 -I---KNP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 145 -~---~~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
. ..| .+++. +|.++. .++. .+.++..|+++++... ..|++++.|+
T Consensus 264 ~~~~~~~~~gg~~l~~~---~d~~l~l~r~~~~---~r~~~v~k~~~~p~~~-~~f~I~~~Gi 319 (324)
T 2z43_A 264 FYGDPTVAVGGHTLYHV---PGIRIQLKKSRGN---RRIARVVDAPHLPEGE-VVFALTEEGI 319 (324)
T ss_dssp ---------------------CEEEEEEECSTT---EEEEEEEECSSSCCEE-EEEEEETTEE
T ss_pred cCCCCCCCCchHHHHhh---CcEEEEEEEcCCC---eEEEEEEECCCCCceE-EEEEEeCCCc
Confidence 1 122 34555 888887 2221 2567778899886553 5899999887
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.91 E-value=2.9e-09 Score=98.66 Aligned_cols=129 Identities=13% Similarity=0.014 Sum_probs=71.3
Q ss_pred EEEEEeCCCchHHHHHHH--HHHhccccCCCeEEEEcCCcccCC-------C-CCCccccccc--hhhcCC---------
Q 026207 28 FFLSYFRPGVGKTTVMRE--IARVLSDEFQKRVVIVDTSNEIGG-------D-GDIPHSAIGT--ARRMQV--------- 86 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~--l~~~l~~~~g~~v~~i~~~~e~~~-------~-~~~~~~~~~~--~~~~~~--------- 86 (241)
+++|+||||||||||+++ +++..+++ ...++++ +.+... . +..++..... ......
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~-g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~ 117 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVT-FEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEV 117 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEE-SSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEE-EeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhh
Confidence 899999999999999999 67888765 3457776 433210 0 1111111000 000000
Q ss_pred CCC-cc--cHHHHHHHHHhcCCcEEEEcCCCCHH-----hHHH-------HHHHHhCCcEEEEeecCCChhhhhcCCc-c
Q 026207 87 PEP-SL--QHKVMIEAVENHMPEVIIVDEIGTEA-----EAHA-------CRSIAERGVMLIGTAHGEWLENIIKNPI-L 150 (241)
Q Consensus 87 ~~~-~~--~~~~~~~~~l~~~p~vlilDE~~~~~-----d~~~-------~~~~~~~g~~vi~t~H~~~~~~~~~~p~-l 150 (241)
... +. ........+-..+|++++||||++.. |+.. +...++.|+++|+++|..+......... .
T Consensus 118 l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~ 197 (525)
T 1tf7_A 118 VGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVE 197 (525)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCH
T ss_pred hcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccce
Confidence 000 00 11122233335789999999998743 4422 2244557999999999986211000001 2
Q ss_pred ccccccccEEEe
Q 026207 151 SDLIGGVDTVTL 162 (241)
Q Consensus 151 ~~l~~~~d~V~~ 162 (241)
+.+ ||+|++
T Consensus 198 ~~l---aD~vi~ 206 (525)
T 1tf7_A 198 EFV---SDNVVI 206 (525)
T ss_dssp HHH---CSEEEE
T ss_pred eee---eeEEEE
Confidence 455 899887
No 99
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.90 E-value=3.5e-09 Score=103.93 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=58.8
Q ss_pred cEEEEEeCCCchHHHHHHHH--------HHhccccCCCeEEEEcCCcccCCCCCCccccccchhh-cCCCCCcccHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREI--------ARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARR-MQVPEPSLQHKVMI 97 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l--------~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 97 (241)
.+++|+||||+||||+++++ .|...|..+ ..+..-..+.. .++.... ....+..+.....+
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~---~~~~~~d~i~~-------~ig~~d~l~~~lStf~~e~~~~ 732 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES---AEVSIVDCILA-------RVGAGDSQLKGVSTFMAEMLET 732 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE---EEEECCSEEEE-------ECC---------CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc---ccchHHHHHHH-------hcCchhhHHHhHhhhHHHHHHH
Confidence 38999999999999999999 332222210 11110001100 0000000 01122223333444
Q ss_pred HHHH--hcCCcEEEEcCCCCHHhHHHH--------HHHHh-CCcEEEEeecCCChh
Q 026207 98 EAVE--NHMPEVIIVDEIGTEAEAHAC--------RSIAE-RGVMLIGTAHGEWLE 142 (241)
Q Consensus 98 ~~~l--~~~p~vlilDE~~~~~d~~~~--------~~~~~-~g~~vi~t~H~~~~~ 142 (241)
+.++ ..+|+++|+|||+++.|+... ....+ .|+++++++|...+.
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT 788 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH
Confidence 4444 689999999999999887321 12333 489999999987643
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.89 E-value=1.5e-09 Score=104.50 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=64.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc-ccCCCeEEEEcCCcccCCCCCCccccccchhhcCC-------CCCcccHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS-DEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-------PEPSLQHKVMI 97 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~-~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 97 (241)
..+++|+||||+||||+++++++... ++.|.- +. . +...-+.+.+ .. .++.. .+..+.....+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~---vp-a-~~~~i~~v~~-i~---~~~~~~d~l~~g~S~~~~e~~~l 646 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSF---VP-A-EEAHLPLFDG-IY---TRIGASDDLAGGKSTFMVEMEEV 646 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC---BS-S-SEEEECCCSE-EE---EECCC------CCSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCce---ee-h-hccceeeHHH-hh---ccCCHHHHHHhcccHHHHHHHHH
Confidence 45899999999999999999999763 333321 11 0 0000011111 00 11111 12223344455
Q ss_pred HHHH--hcCCcEEEEcCC---CCHHhHHHHH-----HHHhCCcEEEEeecCCC
Q 026207 98 EAVE--NHMPEVIIVDEI---GTEAEAHACR-----SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 98 ~~~l--~~~p~vlilDE~---~~~~d~~~~~-----~~~~~g~~vi~t~H~~~ 140 (241)
+.++ ..+|+++++||| ++.+|..... ...+.|.++++++|...
T Consensus 647 a~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 647 ALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 699 (765)
T ss_dssp HHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred HHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6666 779999999999 8888874331 23346899999999865
No 101
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.88 E-value=4.4e-09 Score=103.07 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=50.9
Q ss_pred CCCCcccHHHHHHHHHhcCC---cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCccccccc
Q 026207 86 VPEPSLQHKVMIEAVENHMP---EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPILSDLIG 155 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p---~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~ 155 (241)
.+|+|++|+..++.++..+| +++|+|||++++|+.... ...+.|.+||+++|... .+ ..
T Consensus 863 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--------~i-~~-- 931 (993)
T 2ygr_A 863 TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--------VI-KT-- 931 (993)
T ss_dssp GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--------HH-TT--
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--------HH-Hh--
Confidence 35668899999999999764 999999999999985432 34457999999999875 22 24
Q ss_pred cccEEEe
Q 026207 156 GVDTVTL 162 (241)
Q Consensus 156 ~~d~V~~ 162 (241)
||+|+.
T Consensus 932 -aDrIiv 937 (993)
T 2ygr_A 932 -SDWIID 937 (993)
T ss_dssp -CSEEEE
T ss_pred -CCEEEE
Confidence 788776
No 102
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.88 E-value=8.9e-10 Score=109.17 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=61.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEE-EEcCCc-ccCCCCCCccccccchhhc----CCCCCcccHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVV-IVDTSN-EIGGDGDIPHSAIGTARRM----QVPEPSLQHKVMIEAV 100 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~-~i~~~~-e~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 100 (241)
.+++|+||||+||||+++++ +.+..-. ++. ++.... .+.....+ ...++....+ ..++.+ ..+..+..+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl~~~~a--qiG~~Vpq~~~~l~v~d~I-~~rig~~d~~~~~~stf~~e-m~~~a~al~ 864 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GLLAVMA--QMGCYVPAEVCRLTPIDRV-FTRLGASDRIMSGESTFFVE-LSETASILM 864 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HHHHHHH--TTTCCEESSEEEECCCSBE-EEECC---------CHHHHH-HHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH-HHHHHHh--heeEEeccCcCCCCHHHHH-HHHcCCHHHHhhchhhhHHH-HHHHHHHHH
Confidence 58999999999999999999 7664320 111 222111 11000000 0000000000 000111 223455666
Q ss_pred HhcCCcEEEEcCCCCHHhHHH--------HHHHHhC-CcEEEEeecCCChh
Q 026207 101 ENHMPEVIIVDEIGTEAEAHA--------CRSIAER-GVMLIGTAHGEWLE 142 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~--------~~~~~~~-g~~vi~t~H~~~~~ 142 (241)
+..+|+++++|||+++.|+.. +....+. |+++|+++|.....
T Consensus 865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~ 915 (1022)
T 2o8b_B 865 HATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV 915 (1022)
T ss_dssp HCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHH
T ss_pred hCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 778999999999998877632 1133344 89999999987633
No 103
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.86 E-value=1.7e-09 Score=93.45 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=68.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCc-cc---------C---CCCCCcccc------------ccch
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI---------G---GDGDIPHSA------------IGTA 81 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~-e~---------~---~~~~~~~~~------------~~~~ 81 (241)
.+++|+|||||||||+++.+++.+.+. +.+|.+..... .. . .-..+++.. +..+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 389999999999999999999999877 34555543111 00 0 001111100 0000
Q ss_pred hh----cCCCC-Ccc------------cHHHHHHHHHhcCCc--EEEEcCCCCHHhHHHHHH-HH-hCCcEEEEeecCC
Q 026207 82 RR----MQVPE-PSL------------QHKVMIEAVENHMPE--VIIVDEIGTEAEAHACRS-IA-ERGVMLIGTAHGE 139 (241)
Q Consensus 82 ~~----~~~~~-~~~------------~~~~~~~~~l~~~p~--vlilDE~~~~~d~~~~~~-~~-~~g~~vi~t~H~~ 139 (241)
.. ....+ .+. +++..+++++..+|+ ++++| |++++|+..... .. ..|.++++.+|..
T Consensus 180 ~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 180 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLD 257 (302)
T ss_dssp HHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCS
T ss_pred HHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCC
Confidence 00 00000 010 466777778888999 99999 999999865443 22 4588888888954
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.86 E-value=1.3e-09 Score=106.68 Aligned_cols=112 Identities=12% Similarity=0.057 Sum_probs=59.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCC----eEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQK----RVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~----~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (241)
.+++|+|||||||||++++++...-.. .|. .-..+..-..+...-. ....+ ......++.++++...+..+
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig-~~d~l--~~~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMG-AADNI--YKGRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC-------------CCHHHHHHHHHHHHHH-
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCC-hHHHH--HHhHHHhhHHHHHHHHHHHh-
Confidence 389999999999999999987542111 010 0011110000000000 00000 00011112233444333333
Q ss_pred hcCCcEEEEcCCCCHHhHHHH-------H-HH-HhCCcEEEEeecCCChh
Q 026207 102 NHMPEVIIVDEIGTEAEAHAC-------R-SI-AERGVMLIGTAHGEWLE 142 (241)
Q Consensus 102 ~~~p~vlilDE~~~~~d~~~~-------~-~~-~~~g~~vi~t~H~~~~~ 142 (241)
..+|+++++|||+++.|+... . .. .+.|+++++++|...+.
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence 679999999999999998422 1 22 23589999999987643
No 105
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.83 E-value=3.9e-09 Score=108.42 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=98.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC------CCcccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP------EPSLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l 101 (241)
+++|.||||+|||||+.+++...... +.+++|++ .++.... .. +.+..+. ......+.+++.+.
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS-~Ees~~q------l~--A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDP------IY--ARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEC-TTSCCCH------HH--HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEe-ccchHHH------HH--HHHcCCChhheEEecCCcHHHHHHHHH
Confidence 89999999999999999999988755 56899998 5554211 11 1222211 01113333333332
Q ss_pred ----hcCCcEEEEcCCCCHHh----------------HHH----HH----HHHhCCcEEEEeecCCChhhhhc-CC----
Q 026207 102 ----NHMPEVIIVDEIGTEAE----------------AHA----CR----SIAERGVMLIGTAHGEWLENIIK-NP---- 148 (241)
Q Consensus 102 ----~~~p~vlilDE~~~~~d----------------~~~----~~----~~~~~g~~vi~t~H~~~~~~~~~-~p---- 148 (241)
..+|+++|+|+++.... .+. +. .+++.|++++++.|.++..+... +|
T Consensus 804 ~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~ 883 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 883 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEES
T ss_pred HHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccC
Confidence 47899999999987541 111 11 35678999999999764323222 22
Q ss_pred ---ccccccccccEEEe---C------ChHHHHHHHHHhhhccCCCCCceEEEEE-EcCce
Q 026207 149 ---ILSDLIGGVDTVTL---G------DEEARARRCQKSILERKAPPTFYFLIEM-RERHY 196 (241)
Q Consensus 149 ---~l~~l~~~~d~V~~---~------~~~~~~~~~~~~~k~r~g~~~~~~~fe~-~~~g~ 196 (241)
.+++. +|.+++ . +......+.++..|||+|++.....|+| .+.|+
T Consensus 884 gs~~Leq~---ADvvl~L~R~~~~~~g~~~~g~~r~l~V~KnR~gp~~~~~~F~I~~~~Gi 941 (1706)
T 3cmw_A 884 GGNALKFY---ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 941 (1706)
T ss_dssp SCSHHHHH---EEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEE
T ss_pred Ccchhhhe---eeEEEEEEecccccccccccCcEEEEEEEecCCCCCCceEEEEEEcCCCc
Confidence 34555 788776 1 1100001566778999999999999999 45565
No 106
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.83 E-value=3.4e-09 Score=93.71 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=68.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCc-cc------------CCCCCCcccc------------ccch
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSN-EI------------GGDGDIPHSA------------IGTA 81 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~-e~------------~~~~~~~~~~------------~~~~ 81 (241)
.+++|+|||||||||+++.|++.+.+. +.+|.+..... .. ..-..+++.. +..+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 389999999999999999999999877 34555543111 00 0001111100 0000
Q ss_pred h--h--------cCCCCCc-------ccHHHHHHHHHhcCCc--EEEEcCCCCHHhHHHHHHH--HhCCcEEEEeecCC
Q 026207 82 R--R--------MQVPEPS-------LQHKVMIEAVENHMPE--VIIVDEIGTEAEAHACRSI--AERGVMLIGTAHGE 139 (241)
Q Consensus 82 ~--~--------~~~~~~~-------~~~~~~~~~~l~~~p~--vlilDE~~~~~d~~~~~~~--~~~g~~vi~t~H~~ 139 (241)
. . .+..... .+++..+++++..+|+ ++++| |++++|+...... ...|.++++.+|..
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThlD 314 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLD 314 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESCT
T ss_pred HhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecCc
Confidence 0 0 0000000 0467788888889999 99999 9999998654432 23588988889954
No 107
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.82 E-value=2.2e-08 Score=86.75 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=66.8
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCc------ccHHHH
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPS------LQHKVM 96 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 96 (241)
++.|+++|.||||+|||||+.+++...... .+.+++|++ .++.... .++.++.+.... ...+.+
T Consensus 26 l~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId-~E~s~~~--------~ra~~lGvd~d~llv~~~~~~E~~ 96 (333)
T 3io5_A 26 MQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD-SEFGITP--------AYLRSMGVDPERVIHTPVQSLEQL 96 (333)
T ss_dssp BCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE-SSCCCCH--------HHHHHTTCCGGGEEEEECSBHHHH
T ss_pred CcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe-ccchhhH--------HHHHHhCCCHHHeEEEcCCCHHHH
Confidence 445589999999999999998888776543 357999999 4443211 112333322111 122222
Q ss_pred ----HHH---HHhcCCcEEEEcCCCCHHh-H---------------H--H----H----HHHHhCCcEEEEeecCCChhh
Q 026207 97 ----IEA---VENHMPEVIIVDEIGTEAE-A---------------H--A----C----RSIAERGVMLIGTAHGEWLEN 143 (241)
Q Consensus 97 ----~~~---~l~~~p~vlilDE~~~~~d-~---------------~--~----~----~~~~~~g~~vi~t~H~~~~~~ 143 (241)
+.. +...+|+++|+|++++... + + . + ..+++.|+++|++-|..+ .+
T Consensus 97 ~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k-~G 175 (333)
T 3io5_A 97 RIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE-TQ 175 (333)
T ss_dssp HHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-----
T ss_pred HHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee-cC
Confidence 222 2346799999999987641 1 0 0 1 135678999999999988 55
Q ss_pred h
Q 026207 144 I 144 (241)
Q Consensus 144 ~ 144 (241)
.
T Consensus 176 ~ 176 (333)
T 3io5_A 176 E 176 (333)
T ss_dssp -
T ss_pred c
Confidence 4
No 108
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.77 E-value=7.7e-09 Score=94.13 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=31.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+||+|||||+..++....+..|.+|+|++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 89999999999999999999988764467889887
No 109
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.75 E-value=2.3e-08 Score=86.74 Aligned_cols=158 Identities=12% Similarity=0.136 Sum_probs=90.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc--cc---------cCC----CeEEEEcCCcccCCCCCCccccccchhhcCC-----
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL--SD---------EFQ----KRVVIVDTSNEIGGDGDIPHSAIGTARRMQV----- 86 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l--~~---------~~g----~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~----- 86 (241)
.+++|+||||+|||||+.+++... +. ..| .+++|++ .++... +.....++.++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~-~e~~~~----~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYID-TEGTFR----PERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEE-SSSCCC----HHHHHHHHHHHTCCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEE-CCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 389999999999999999999753 21 123 5899998 333210 1100001111111
Q ss_pred ------CC--CcccHHH----HHHHHHh-cCCcEEEEcCCCCHHhH----------H--HH--------HHHHhCCcEEE
Q 026207 87 ------PE--PSLQHKV----MIEAVEN-HMPEVIIVDEIGTEAEA----------H--AC--------RSIAERGVMLI 133 (241)
Q Consensus 87 ------~~--~~~~~~~----~~~~~l~-~~p~vlilDE~~~~~d~----------~--~~--------~~~~~~g~~vi 133 (241)
.. ....+.. +...+.. .++++||||+++..... . .+ ..+.+.|++++
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 00 0111111 2222333 57899999999866421 0 01 13456799999
Q ss_pred EeecCCChhhh-h---cCC----ccccccccccEEEe---CChHHHHHHHHHhhhccCCCCCceEEEEEEcCce
Q 026207 134 GTAHGEWLENI-I---KNP----ILSDLIGGVDTVTL---GDEEARARRCQKSILERKAPPTFYFLIEMRERHY 196 (241)
Q Consensus 134 ~t~H~~~~~~~-~---~~p----~l~~l~~~~d~V~~---~~~~~~~~~~~~~~k~r~g~~~~~~~fe~~~~g~ 196 (241)
++.|..+-.+. + ..| .+++. +|.++. .++. .|.++..|+++++... ..|++.+.|+
T Consensus 254 ~~nq~~~~~~~~~g~~~~~~g~~~~~~~---~d~~i~l~~~~~~---~r~~~v~k~~~~p~~~-~~f~I~~~Gi 320 (322)
T 2i1q_A 254 VTNQVSAKPDAFFGMAEQAIGGHIVGHA---ATFRFFVRKGKGD---KRVAKLYDSPHLPDAE-AIFRITEKGI 320 (322)
T ss_dssp EEECEECC-------CCEESSHHHHHHH---CSEEEEEEECSTT---EEEEEEEECSSSCCEE-EEEEEETTEE
T ss_pred EECceeecCCCCCCCCcCCCCcHHHHhc---CcEEEEEEecCCC---eEEEEEEECCCCCCeE-EEEEEeCCCc
Confidence 99997652221 1 012 24555 888887 3221 2567778899887654 4899998886
No 110
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.73 E-value=8.4e-10 Score=95.88 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=58.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC-CeEEEEcCCcccCCC------C-----CCccc-c-------c-----cch-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ-KRVVIVDTSNEIGGD------G-----DIPHS-A-------I-----GTA- 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g-~~v~~i~~~~e~~~~------~-----~~~~~-~-------~-----~~~- 81 (241)
+++|.||||||||||++.|++.+.+..| .++.++.+...+... . ..+.. . + +..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~ 171 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDY 171 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSC
T ss_pred EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCccc
Confidence 8999999999999999999999977544 456666532221110 0 00100 0 0 000
Q ss_pred hhcCCCCCcccHHHHHHHHHhcCCcEEEEcCCCCHHhH
Q 026207 82 RRMQVPEPSLQHKVMIEAVENHMPEVIIVDEIGTEAEA 119 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~p~vlilDE~~~~~d~ 119 (241)
.....+|.+++++..++.++..+|++||+|||...+|+
T Consensus 172 ~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 11223455667777677777889999999999888653
No 111
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.72 E-value=2.8e-09 Score=90.75 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=22.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ 55 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g 55 (241)
.++|+||||||||||++.|++...+..|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4789999999999999999999887644
No 112
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.70 E-value=5.1e-08 Score=84.28 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=29.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|+|||||||||+++.+++.+.+. +.+|.+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g 137 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCA 137 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 499999999999999999999999887 44555554
No 113
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.69 E-value=3.7e-08 Score=85.42 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=29.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+||+|||||+.+++...... +.+++|++
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~s 103 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHS 103 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 89999999999999999999776544 47899987
No 114
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=2.2e-08 Score=89.56 Aligned_cols=70 Identities=27% Similarity=0.361 Sum_probs=52.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+... ..++.+. ..++... .. .......+.++..+..+.|.+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~----~~f~~v~-~s~l~sk------~v--------Gese~~vr~lF~~Ar~~aP~I 244 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTD----CKFIRVS-GAELVQK------YI--------GEGSRMVRELFVMAREHAPSI 244 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHT----CEEEEEE-GGGGSCS------ST--------THHHHHHHHHHHHHHHTCSEE
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhC----CCceEEE-hHHhhcc------cc--------chHHHHHHHHHHHHHHhCCce
Confidence 489999999999999999999864 5677777 5554211 11 112345678889999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
||+||+.+.
T Consensus 245 IFiDEiDai 253 (405)
T 4b4t_J 245 IFMDEIDSI 253 (405)
T ss_dssp EEEESSSCC
T ss_pred Eeeecchhh
Confidence 999998644
No 115
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.66 E-value=6.5e-09 Score=83.86 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQ 55 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g 55 (241)
.++|+||||||||||++.+++.+. +.|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 689999999999999999999986 433
No 116
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.64 E-value=5.9e-08 Score=88.80 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=49.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcEE
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEVI 108 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~vl 108 (241)
++|+||||+||||+++++++... ..+++++ ..++... .. .....+.+..++.+....|.+|
T Consensus 52 vLL~GppGtGKT~Laraia~~~~----~~f~~is-~~~~~~~------~~--------g~~~~~~r~lf~~A~~~~p~IL 112 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN----VPFFHIS-GSDFVEL------FV--------GVGAARVRDLFAQAKAHAPCIV 112 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT----CCEEEEE-GGGTTTC------CT--------THHHHHHHHHHHHHHHTCSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcC----CCeeeCC-HHHHHHH------Hh--------cccHHHHHHHHHHHHhcCCCEE
Confidence 88999999999999999999763 4566666 4433211 00 1123456778888888999999
Q ss_pred EEcCCCC
Q 026207 109 IVDEIGT 115 (241)
Q Consensus 109 ilDE~~~ 115 (241)
||||+..
T Consensus 113 fIDEid~ 119 (476)
T 2ce7_A 113 FIDEIDA 119 (476)
T ss_dssp EEETGGG
T ss_pred EEechhh
Confidence 9999944
No 117
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.64 E-value=2.5e-08 Score=96.53 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=55.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCc-ccCCCCCCcc--ccccchhhc----CCCCCcccHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSN-EIGGDGDIPH--SAIGTARRM----QVPEPSLQHKVMIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~-e~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~ 98 (241)
.+++|+||||+||||+++++++..... .|. ++.... .+ +...+ ..++....+ ...+.++. +....
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~---~vpa~~~~i---~~~~~i~~~~~~~d~l~~~~stf~~e~~-~~~~i 680 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGS---YVPAQKVEI---GPIDRIFTRVGAADDLASGRSTFMVEMT-ETANI 680 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTC---CBSSSEEEE---CCCCEEEEEEC-----------CHHHHH-HHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCc---ccchhcccc---eeHHHHHhhCCHHHHHHhhhhhhhHHHH-HHHHH
Confidence 489999999999999999999864321 121 111000 00 00000 000000000 00111111 11111
Q ss_pred HHHhcCCcEEEEcCCCCHHhH---HHH-----HHHHh-CCcEEEEeecCCC
Q 026207 99 AVENHMPEVIIVDEIGTEAEA---HAC-----RSIAE-RGVMLIGTAHGEW 140 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~~d~---~~~-----~~~~~-~g~~vi~t~H~~~ 140 (241)
.....+|+++++|||+++.|+ ..+ ....+ .|.++++++|...
T Consensus 681 l~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e 731 (800)
T 1wb9_A 681 LHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 731 (800)
T ss_dssp HHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHH
Confidence 223579999999999665444 222 13334 4899999999875
No 118
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.62 E-value=1.9e-08 Score=103.36 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=92.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCC---------CCcccHHHHH-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVP---------EPSLQHKVMI- 97 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~- 97 (241)
+++|.||||+|||||+.+++...... |.+++|++ .++.... . ++.++.+. +...+....+
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis-~E~s~~~------~--~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDP------I--YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEC-TTSCCCH------H--HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEE-ccCchHH------H--HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 89999999999999999999887655 67899998 4443211 0 01111111 1111222222
Q ss_pred HHHHhcCCcEEEEcCCCCHHh----------------HH----HHH----HHHhCCcEEEEeecCCChhhhh-------c
Q 026207 98 EAVENHMPEVIIVDEIGTEAE----------------AH----ACR----SIAERGVMLIGTAHGEWLENII-------K 146 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~~~~~d----------------~~----~~~----~~~~~g~~vi~t~H~~~~~~~~-------~ 146 (241)
..+...+|+++|+|+++.... .+ .+. .+++.|+++|++.|.+...+.. .
T Consensus 455 ~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~ 534 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 534 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEES
T ss_pred HHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCC
Confidence 223357899999999986642 01 111 3467799999999976522211 1
Q ss_pred CC-ccccccccccEEEe---CC----h--HHHHHHHHHhhhccCCCCCceEEEEE
Q 026207 147 NP-ILSDLIGGVDTVTL---GD----E--EARARRCQKSILERKAPPTFYFLIEM 191 (241)
Q Consensus 147 ~p-~l~~l~~~~d~V~~---~~----~--~~~~~~~~~~~k~r~g~~~~~~~fe~ 191 (241)
++ .+++. +|.+++ .+ + ....++.++..|+|.+++.....|++
T Consensus 535 gg~ale~~---ADv~L~L~R~~~~~~g~~~~~~~~~l~V~KnR~gp~~~~~~F~I 586 (1706)
T 3cmw_A 535 GGNALKFY---ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQI 586 (1706)
T ss_dssp SCSHHHHH---EEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEE
T ss_pred CCcceeee---CCEEEEEEeccccccCccccCcEEEEEEEecCCCCCCCeEEEEE
Confidence 11 45666 888776 11 1 00112456778999999988889985
No 119
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=3.9e-08 Score=88.89 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=51.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+... ..++.++ ..++... .. .......+.++..+..+.|.+
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~----~~f~~v~-~s~l~~~------~v--------Gese~~ir~lF~~A~~~aP~I 277 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTN----ATFLKLA-APQLVQM------YI--------GEGAKLVRDAFALAKEKAPTI 277 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT----CEEEEEE-GGGGCSS------CS--------SHHHHHHHHHHHHHHHHCSEE
T ss_pred eeEEECcCCCCHHHHHHHHHHHhC----CCEEEEe-hhhhhhc------cc--------chHHHHHHHHHHHHHhcCCeE
Confidence 589999999999999999999864 5667777 5554211 11 112345677888889999999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
|++||+-+
T Consensus 278 ifiDEiDa 285 (434)
T 4b4t_M 278 IFIDELDA 285 (434)
T ss_dssp EEEECTHH
T ss_pred Eeecchhh
Confidence 99999743
No 120
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.60 E-value=3.4e-08 Score=87.26 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=87.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCCCC--CcccHHHHHHH-HHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPE--PSLQHKVMIEA-VEN 102 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~-~l~ 102 (241)
.+++|.||||+|||||+.+++...... +.+++|++ .++..... .....+. ...+.+.. ........+.. ...
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid-~E~s~~~~--~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDPI--YARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSCCCCHH--HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe-CCCCccHH--HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 389999999999999999999877654 57899998 43321100 0000000 00011111 11122222222 235
Q ss_pred cCCcEEEEcCCCCHHh-H-------------H--H----HH----HHHhCCcEEEEeecCCChhhh-h---cCC----cc
Q 026207 103 HMPEVIIVDEIGTEAE-A-------------H--A----CR----SIAERGVMLIGTAHGEWLENI-I---KNP----IL 150 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d-~-------------~--~----~~----~~~~~g~~vi~t~H~~~~~~~-~---~~p----~l 150 (241)
.++++||||+++.... . . . +. .+++.|+++|++.|...-.+. + ..| .+
T Consensus 140 ~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l 219 (356)
T 1u94_A 140 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNAL 219 (356)
T ss_dssp TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHH
T ss_pred cCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcce
Confidence 7899999999875431 0 0 1 11 245679999999998753221 1 112 24
Q ss_pred ccccccccEEEe---CC----hHH--HHHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 151 SDLIGGVDTVTL---GD----EEA--RARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 151 ~~l~~~~d~V~~---~~----~~~--~~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
++. +|.++. .+ +.. ...+.+...|++.+|+.-...|++. +.|+
T Consensus 220 ~~~---advrl~l~r~~~~k~g~~~~g~~~~~~i~K~r~~p~~~~~~f~i~~~~Gi 272 (356)
T 1u94_A 220 KFY---ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 272 (356)
T ss_dssp HHH---CSEEEEEEEEEEEESSSSEEEEEEEEEEEEESSBCSCCEEEEEEETTTEE
T ss_pred eee---ccEEEEEEEeeeeccCccccCcEEEEEECCCccCCCCCcEEEEEEcCCCc
Confidence 445 666554 11 110 0114556678898888777778874 6666
No 121
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=4.8e-08 Score=88.35 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=51.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+.+. ..++.++ ..++... .. .......+..+..+..+.|.+
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~----~~~~~v~-~s~l~sk------~~--------Gese~~ir~~F~~A~~~~P~I 277 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIG----ANFIFSP-ASGIVDK------YI--------GESARIIREMFAYAKEHEPCI 277 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT----CEEEEEE-GGGTCCS------SS--------SHHHHHHHHHHHHHHHSCSEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC----CCEEEEe-hhhhccc------cc--------hHHHHHHHHHHHHHHhcCCce
Confidence 589999999999999999999874 5667777 5544211 11 111345677888888999999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
||+||+-+
T Consensus 278 ifiDEiDa 285 (437)
T 4b4t_L 278 IFMDEVDA 285 (437)
T ss_dssp EEEECCCS
T ss_pred eeeecccc
Confidence 99999854
No 122
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.58 E-value=6.2e-08 Score=100.79 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=95.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC------CcccHHHHHHHH-
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE------PSLQHKVMIEAV- 100 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~- 100 (241)
+++|.||||+|||||+.+++...... |.+++|++ .++.... . ++.++.+.. .......+++.+
T Consensus 385 lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis-~E~s~~~------~--~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 385 IVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDP------I--YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEC-TTSCCCH------H--HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-cCCCHHH------H--HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 89999999999999999999887654 67899998 5443211 0 011222110 011223333322
Q ss_pred ---HhcCCcEEEEcCCCCHHh----------------HH----HHH----HHHhCCcEEEEeecCCChhhhh-cC---C-
Q 026207 101 ---ENHMPEVIIVDEIGTEAE----------------AH----ACR----SIAERGVMLIGTAHGEWLENII-KN---P- 148 (241)
Q Consensus 101 ---l~~~p~vlilDE~~~~~d----------------~~----~~~----~~~~~g~~vi~t~H~~~~~~~~-~~---p- 148 (241)
...+|++||+|+++.... .+ .++ .+++.|+++|++.|.+...+.. .. |
T Consensus 455 ~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~ps 534 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 534 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECS
T ss_pred HHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCC
Confidence 257899999999875531 11 111 2467899999999987532221 11 1
Q ss_pred ---ccccccccccEEEe---CC----hH--HHHHHHHHhhhccCCCCCceEEEEE-EcCce
Q 026207 149 ---ILSDLIGGVDTVTL---GD----EE--ARARRCQKSILERKAPPTFYFLIEM-RERHY 196 (241)
Q Consensus 149 ---~l~~l~~~~d~V~~---~~----~~--~~~~~~~~~~k~r~g~~~~~~~fe~-~~~g~ 196 (241)
.+++. +|.+++ .+ +. ...++.+...|||++++.....|++ ...|+
T Consensus 535 Gg~ale~~---ADv~l~L~R~~~~~~g~~~~g~~~~v~V~KnR~gp~g~~~~f~I~~~~Gi 592 (2050)
T 3cmu_A 535 GGNALKFY---ASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGI 592 (2050)
T ss_dssp SHHHHHHH---EEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEE
T ss_pred Ccchhhhh---CCEEEEEEecccccCCccccCcEEEEEEEecCCCCCCceEEEEEEeCCCc
Confidence 35666 788776 11 11 0011345678999999988889996 34454
No 123
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.56 E-value=1.1e-07 Score=81.12 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=51.1
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
+...++|+||||+||||+++++++... ..++.++ ..++... ...+.....+..+..+...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~----~~~~~i~-~~~l~~~--------------~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS----ATFLNIS-AASLTSK--------------YVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT----CEEEEEE-STTTSSS--------------SCSCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC----CCeEEee-HHHHhhc--------------ccchHHHHHHHHHHHHHHcC
Confidence 345799999999999999999999863 4566666 3333111 00112344556677777889
Q ss_pred CcEEEEcCCCCH
Q 026207 105 PEVIIVDEIGTE 116 (241)
Q Consensus 105 p~vlilDE~~~~ 116 (241)
|.+|++||+...
T Consensus 114 ~~vl~iDEid~l 125 (297)
T 3b9p_A 114 PSIIFIDEVDSL 125 (297)
T ss_dssp SEEEEEETGGGT
T ss_pred CcEEEeccHHHh
Confidence 999999999654
No 124
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=5.7e-08 Score=87.37 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=52.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+... ..++.++ ..++... .. .......+.++..+....|.+
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~----~~fi~v~-~s~l~sk------~v--------Gesek~ir~lF~~Ar~~aP~I 278 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTS----ATFLRIV-GSELIQK------YL--------GDGPRLCRQIFKVAGENAPSI 278 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHT----CEEEEEE-SGGGCCS------SS--------SHHHHHHHHHHHHHHHTCSEE
T ss_pred CCceECCCCchHHHHHHHHHHHhC----CCEEEEE-HHHhhhc------cC--------chHHHHHHHHHHHHHhcCCcE
Confidence 599999999999999999999874 5667777 5555211 11 112345677888899999999
Q ss_pred EEEcCCCC
Q 026207 108 IIVDEIGT 115 (241)
Q Consensus 108 lilDE~~~ 115 (241)
|++||+.+
T Consensus 279 IfiDEiDa 286 (437)
T 4b4t_I 279 VFIDEIDA 286 (437)
T ss_dssp EEEEEESS
T ss_pred EEEehhhh
Confidence 99999754
No 125
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.55 E-value=7.7e-08 Score=81.86 Aligned_cols=74 Identities=22% Similarity=0.242 Sum_probs=48.9
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
..+.| ++|+||||||||||++++++.+.. ..++++ +.++... ..+. ........+..+..
T Consensus 42 ~~~~G-vlL~Gp~GtGKTtLakala~~~~~----~~i~i~-g~~l~~~------~~~~--------~~~~i~~vf~~a~~ 101 (274)
T 2x8a_A 42 VTPAG-VLLAGPPGCGKTLLAKAVANESGL----NFISVK-GPELLNM------YVGE--------SERAVRQVFQRAKN 101 (274)
T ss_dssp CCCSE-EEEESSTTSCHHHHHHHHHHHTTC----EEEEEE-TTTTCSS------TTHH--------HHHHHHHHHHHHHH
T ss_pred CCCCe-EEEECCCCCcHHHHHHHHHHHcCC----CEEEEE-cHHHHhh------hhhH--------HHHHHHHHHHHHHh
Confidence 34455 999999999999999999998753 346666 4443211 0000 01223445566666
Q ss_pred cCCcEEEEcCCCCH
Q 026207 103 HMPEVIIVDEIGTE 116 (241)
Q Consensus 103 ~~p~vlilDE~~~~ 116 (241)
..|.++++||+...
T Consensus 102 ~~p~i~~~Deid~~ 115 (274)
T 2x8a_A 102 SAPCVIFFDEVDAL 115 (274)
T ss_dssp TCSEEEEEETCTTT
T ss_pred cCCCeEeeehhhhh
Confidence 78999999998653
No 126
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.55 E-value=2e-07 Score=80.09 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=50.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+||||++++++..+. ...++++ ..++. .... .......+..+..+....|.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~-~~~l~------~~~~--------g~~~~~~~~~f~~a~~~~p~ 110 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ----ANFISIK-GPELL------TMWF--------GESEANVREIFDKARQAAPC 110 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT----CEEEEEC-HHHHH------HHHH--------TTCTTHHHHHHHHHHHTCSE
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEE-hHHHH------hhhc--------CchHHHHHHHHHHHHhcCCe
Confidence 3699999999999999999999874 4556665 33321 0000 11123455677777778899
Q ss_pred EEEEcCCCCHH
Q 026207 107 VIIVDEIGTEA 117 (241)
Q Consensus 107 vlilDE~~~~~ 117 (241)
++++||+....
T Consensus 111 il~iDEid~l~ 121 (301)
T 3cf0_A 111 VLFFDELDSIA 121 (301)
T ss_dssp EEEECSTTHHH
T ss_pred EEEEEChHHHh
Confidence 99999997543
No 127
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=7.4e-08 Score=86.96 Aligned_cols=68 Identities=24% Similarity=0.391 Sum_probs=51.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+.+. ..++.++ ..++... ..| ......+.++..+..+.|.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~----~~~~~v~-~~~l~~~------~~G--------e~e~~ir~lF~~A~~~aP~I 268 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTK----AAFIRVN-GSEFVHK------YLG--------EGPRMVRDVFRLARENAPSI 268 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHT----CEEEEEE-GGGTCCS------SCS--------HHHHHHHHHHHHHHHTCSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----CCeEEEe-cchhhcc------ccc--------hhHHHHHHHHHHHHHcCCCe
Confidence 489999999999999999999874 5677777 5444211 111 11345677888899999999
Q ss_pred EEEcCCC
Q 026207 108 IIVDEIG 114 (241)
Q Consensus 108 lilDE~~ 114 (241)
+++||+.
T Consensus 269 ifiDEiD 275 (428)
T 4b4t_K 269 IFIDEVD 275 (428)
T ss_dssp EEEECTH
T ss_pred eechhhh
Confidence 9999984
No 128
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.54 E-value=1.4e-07 Score=83.53 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=87.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC-------CC--CcccHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV-------PE--PSLQHKVMIE 98 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~ 98 (241)
+++|.||||+|||||+..++...... +.+++|++ .+..... . ++.++.+ .. ........+.
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~-~E~s~~~------~--~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFID-AEHALDP------V--YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE-SSCCCCH------H--HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEE-CCCChhH------H--HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 89999999999999999998877544 57899998 3332110 0 0111111 11 1112222222
Q ss_pred HHH-hcCCcEEEEcCCCCHHh--------------H--H----HHH----HHHhCCcEEEEeecCCChhhh-hcC---C-
Q 026207 99 AVE-NHMPEVIIVDEIGTEAE--------------A--H----ACR----SIAERGVMLIGTAHGEWLENI-IKN---P- 148 (241)
Q Consensus 99 ~~l-~~~p~vlilDE~~~~~d--------------~--~----~~~----~~~~~g~~vi~t~H~~~~~~~-~~~---p- 148 (241)
.+. ..++++||||+++.... . . .+. .+.+.++++|++.|...-.+. +.. |
T Consensus 146 ~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~ 225 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTT 225 (366)
T ss_dssp HHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------
T ss_pred HHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccC
Confidence 222 36799999999875531 0 1 111 245679999999998752222 112 2
Q ss_pred ---ccccccccccEEEe---CCh--H-HH----HHHHHHhhhccCCCCCceEEEEEE-cCce
Q 026207 149 ---ILSDLIGGVDTVTL---GDE--E-AR----ARRCQKSILERKAPPTFYFLIEMR-ERHY 196 (241)
Q Consensus 149 ---~l~~l~~~~d~V~~---~~~--~-~~----~~~~~~~~k~r~g~~~~~~~fe~~-~~g~ 196 (241)
.+++. +|.++. .+. . .. ..+.+...|+|.+++.-...|++. ..|+
T Consensus 226 gg~al~~~---a~~rl~L~r~~~~~k~~~~~~g~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi 284 (366)
T 1xp8_A 226 GGRALKFY---ASVRLDVRKIGQPTKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYGKGF 284 (366)
T ss_dssp CHHHHHHH---CSEEEEEEEESCCC------CEEEEEEEEEEESSSCCCCEEEEEEETTTEE
T ss_pred Ccchhhhe---eeEEEEEEecchhcccCccccCCEEEEEEEcCCCCCCCceEEEEEEeCCCc
Confidence 23444 677665 221 0 00 114456678999998777788886 5565
No 129
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.53 E-value=2.1e-07 Score=80.95 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=51.7
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
+...++|+||||+|||+++++++..+. +..++++. ..++... .. .......+..+..+...+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~-~~~l~~~------~~--------g~~~~~~~~lf~~a~~~~ 105 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSIS-SSDLVSK------WL--------GESEKLVKNLFQLARENK 105 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEE-CCSSCCS------SC--------CSCHHHHHHHHHHHHHTS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEE-hHHHHhh------hh--------hHHHHHHHHHHHHHHhcC
Confidence 335789999999999999999999873 24667777 4443211 00 111234556677777789
Q ss_pred CcEEEEcCCCCH
Q 026207 105 PEVIIVDEIGTE 116 (241)
Q Consensus 105 p~vlilDE~~~~ 116 (241)
|.+||+||+...
T Consensus 106 ~~vl~iDEid~l 117 (322)
T 1xwi_A 106 PSIIFIDEIDSL 117 (322)
T ss_dssp SEEEEEETTTGG
T ss_pred CcEEEeecHHHh
Confidence 999999999765
No 130
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=8.2e-08 Score=87.08 Aligned_cols=70 Identities=24% Similarity=0.272 Sum_probs=52.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||++++++|+.+. ..++.++ ..++... .. .......+.++..+..+.|.+
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~----~~fi~vs-~s~L~sk------~v--------Gesek~ir~lF~~Ar~~aP~I 305 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTD----ATFIRVI-GSELVQK------YV--------GEGARMVRELFEMARTKKACI 305 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHT----CEEEEEE-GGGGCCC------SS--------SHHHHHHHHHHHHHHHTCSEE
T ss_pred ceEeeCCCCCcHHHHHHHHHhccC----CCeEEEE-hHHhhcc------cC--------CHHHHHHHHHHHHHHhcCCce
Confidence 589999999999999999999874 5667777 5554211 11 112345678888999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
||+||+.+.
T Consensus 306 IfiDEiDai 314 (467)
T 4b4t_H 306 IFFDEIDAV 314 (467)
T ss_dssp EEEECCTTT
T ss_pred Eeecccccc
Confidence 999998644
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=3.2e-07 Score=79.94 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.4
Q ss_pred EEEEeCCCchHHHHHHHHHH-hcccc
Q 026207 29 FLSYFRPGVGKTTVMREIAR-VLSDE 53 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~-~l~~~ 53 (241)
++|+||||+||||+++.+++ ...+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 89999999999999999999 55555
No 132
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=98.50 E-value=3.8e-07 Score=82.80 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=87.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCccccc--cc---------------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSAI--GT--------------- 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~~~--~~--------------- 80 (241)
.+++|.|+||+|||||+.+++...... |.+|+|++ .++.... ..++...+ +.
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fS-lEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~ 275 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHS-LEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAI 275 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEEC-SSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEE-CCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHHHH
Confidence 389999999999999999999887665 68999997 4432110 00000000 00
Q ss_pred --h--hhcCC-CCCcccHHHHHHHH----HhcCCc--EEEEcCCCCHHhH-------H-------HH-HHHHhCCcEEEE
Q 026207 81 --A--RRMQV-PEPSLQHKVMIEAV----ENHMPE--VIIVDEIGTEAEA-------H-------AC-RSIAERGVMLIG 134 (241)
Q Consensus 81 --~--~~~~~-~~~~~~~~~~~~~~----l~~~p~--vlilDE~~~~~d~-------~-------~~-~~~~~~g~~vi~ 134 (241)
. ..+.+ ...+.....+.+.+ ..++++ +||+|.++..... . .+ ..+++.|+++++
T Consensus 276 ~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ 355 (444)
T 3bgw_A 276 GEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIA 355 (444)
T ss_dssp HHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 0 00111 11233444443332 235899 9999998754211 1 11 145677999999
Q ss_pred eecCCChhhh--hcCCccccccc------cccEEEe--CChH------HHHHHHHHhhhccCCCCCc
Q 026207 135 TAHGEWLENI--IKNPILSDLIG------GVDTVTL--GDEE------ARARRCQKSILERKAPPTF 185 (241)
Q Consensus 135 t~H~~~~~~~--~~~p~l~~l~~------~~d~V~~--~~~~------~~~~~~~~~~k~r~g~~~~ 185 (241)
+.|.+...+. -.+|.+.++-+ .+|.|++ .+.. ......+...|+|.|+++.
T Consensus 356 lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~~~~~~~~~~l~i~K~R~G~~g~ 422 (444)
T 3bgw_A 356 LSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGT 422 (444)
T ss_dssp EEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCTTCSSTTEEEEEEEEESSSCCEE
T ss_pred EecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccccccCCCeEEEEEEcccCCCCeE
Confidence 9998752211 12354433321 1899998 2111 0000234556899988763
No 133
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.49 E-value=2.2e-07 Score=84.28 Aligned_cols=35 Identities=26% Similarity=0.178 Sum_probs=30.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+||+|||||+..++.......|.+|+|++
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 89999999999999999999987654467889887
No 134
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.48 E-value=6.6e-08 Score=83.69 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=53.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhh-----cCCCCCcccHHH---HHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARR-----MQVPEPSLQHKV---MIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~ 98 (241)
.+++|+|||||||||++..+++.+.+. +.+|..++.. .. ..... .+......+ +...+++..++. .++
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D-~~-r~~a~-eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAAD-TF-RAAAI-EQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-TT-CHHHH-HHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccc-cc-cHHHH-HHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 489999999999999999999999876 5677777621 11 00000 000000011 111223334444 566
Q ss_pred HHHhcCCcEEEEcCCCCH
Q 026207 99 AVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~ 116 (241)
.++..+|+++|+|+|...
T Consensus 181 ~a~~~~~dvvIiDtpg~~ 198 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRL 198 (306)
T ss_dssp HHHHTTCSEEEEEECCCC
T ss_pred HHHhcCCCEEEEECCCch
Confidence 667889999999999753
No 135
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.45 E-value=1.6e-07 Score=75.27 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=56.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCCCCccccccch-hhcCCCCCcccHHHHHHHHHhcC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
.+++++||+|+||||++..++...... +.+++++....+.. +...+.. ..+.. ...... ....+++.+ ..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~~v~~~~~~~d~r~~~~~i~s-~~g~~~~~~~~~----~~~~~~~~~-~~~ 76 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG-KKKVAVFKPKIDSRYHSTMIVS-HSGNGVEAHVIE----RPEEMRKYI-EED 76 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TCEEEEEEEC-----CCCEECC-----CEECEEES----SGGGGGGGC-CTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeeccccccCcccEEe-cCCCceeeEEEC----CHHHHHHHh-cCC
Confidence 478999999999999997777765433 56777664121110 0000000 00000 000000 111111111 135
Q ss_pred CcEEEEcCCCCH-HhH-HHHHHHHhCCcEEEEeecCCC
Q 026207 105 PEVIIVDEIGTE-AEA-HACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 105 p~vlilDE~~~~-~d~-~~~~~~~~~g~~vi~t~H~~~ 140 (241)
+++|++||++.. .+. ..+....+.|..++.+.+..+
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 799999999865 222 334445566888888777654
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.45 E-value=2.9e-07 Score=76.93 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=45.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-++|+||||+||||+++++++... ..+++++ ..++... .. .......+..+..+....|.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~----~~~~~i~-~~~~~~~------~~--------~~~~~~~~~~~~~a~~~~~~i 107 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK----VPFFTIS-GSDFVEM------FV--------GVGASRVRDMFEQAKKAAPCI 107 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT----CCEEEEC-SCSSTTS------CC--------CCCHHHHHHHHHHHHTTCSEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC----CCEEEEe-HHHHHHH------hh--------hhhHHHHHHHHHHHHHcCCee
Confidence 489999999999999999999763 3456676 4433111 00 011223445666666778899
Q ss_pred EEEcCC
Q 026207 108 IIVDEI 113 (241)
Q Consensus 108 lilDE~ 113 (241)
+++||+
T Consensus 108 l~iDei 113 (257)
T 1lv7_A 108 IFIDEI 113 (257)
T ss_dssp EEETTH
T ss_pred ehhhhh
Confidence 999998
No 137
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.45 E-value=2.1e-07 Score=78.77 Aligned_cols=71 Identities=27% Similarity=0.364 Sum_probs=48.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+||||++++++..+. ..++++. ..++... ..+ ......+..+..+....|.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~~----~~~~~v~-~~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~ 112 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATETN----ATFIRVV-GSELVKK------FIG--------EGASLVKDIFKLAKEKAPS 112 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHTT----CEEEEEE-GGGGCCC------STT--------HHHHHHHHHHHHHHHTCSE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEe-hHHHHHh------ccc--------hHHHHHHHHHHHHHHcCCe
Confidence 3699999999999999999999864 4666665 3333111 000 0122345566777778899
Q ss_pred EEEEcCCCCH
Q 026207 107 VIIVDEIGTE 116 (241)
Q Consensus 107 vlilDE~~~~ 116 (241)
+|+|||+...
T Consensus 113 vl~iDEid~l 122 (285)
T 3h4m_A 113 IIFIDEIDAI 122 (285)
T ss_dssp EEEEETTHHH
T ss_pred EEEEECHHHh
Confidence 9999999654
No 138
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=98.45 E-value=4.2e-07 Score=83.56 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=86.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---------CCCcccc---c--cch------------
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---------GDIPHSA---I--GTA------------ 81 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---------~~~~~~~---~--~~~------------ 81 (241)
+++|.|+||+|||||+.+++.......|.+|+|++ .++.... ..++... + +..
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s-~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 322 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM-LEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL 322 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE-SSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe-ccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH
Confidence 89999999999999999999877654357899987 4332100 0000000 0 000
Q ss_pred ---hhcCCCC--CcccHHHHHHHH----HhcCCcEEEEcCCCCHH------hH--------HHH-HHHHhCCcEEEEeec
Q 026207 82 ---RRMQVPE--PSLQHKVMIEAV----ENHMPEVIIVDEIGTEA------EA--------HAC-RSIAERGVMLIGTAH 137 (241)
Q Consensus 82 ---~~~~~~~--~~~~~~~~~~~~----l~~~p~vlilDE~~~~~------d~--------~~~-~~~~~~g~~vi~t~H 137 (241)
..+.+.+ .......+.+.+ ..++|+++|||.++... +. ..+ ..+++.|++++++.|
T Consensus 323 ~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q 402 (503)
T 1q57_A 323 FGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 402 (503)
T ss_dssp HTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEc
Confidence 0011111 124444444333 34689999999987532 11 111 245677999999999
Q ss_pred CCChhh-----hhcCCccccccc------cccEEEe--CChH--HHHHHHHHhhhccC-CCCCce
Q 026207 138 GEWLEN-----IIKNPILSDLIG------GVDTVTL--GDEE--ARARRCQKSILERK-APPTFY 186 (241)
Q Consensus 138 ~~~~~~-----~~~~p~l~~l~~------~~d~V~~--~~~~--~~~~~~~~~~k~r~-g~~~~~ 186 (241)
.+..+. .-.+|.+.++-+ .+|.|++ .+.. ....+.+...|+|| |++...
T Consensus 403 ~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~~~~~~~~~l~v~K~R~~G~~g~~ 467 (503)
T 1q57_A 403 LKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNLVLVRILKCRFTGDTGIA 467 (503)
T ss_dssp CCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSSSSCTTEEEEEEEEETTTCCCEEE
T ss_pred CCchhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCcCCCCCeEEEEEEeccCCCCCCce
Confidence 886221 112333333321 1899987 2111 00114567789995 876543
No 139
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.43 E-value=1.2e-07 Score=86.01 Aligned_cols=98 Identities=13% Similarity=0.232 Sum_probs=58.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
..++|+||||+|||||+++++..+... ++.++++++ ..++. ...... +. .... ..+......+|
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~~~~~------~~~~~~---~~----~~~~-~~~~~~~~~~~ 195 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEKFL------NDLVDS---MK----EGKL-NEFREKYRKKV 195 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-HHHHH------HHHHHH---HH----TTCH-HHHHHHHTTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHH------HHHHHH---HH----cccH-HHHHHHhcCCC
Confidence 469999999999999999999987543 246778876 33221 000000 00 0011 12222233489
Q ss_pred cEEEEcCCCCHHh----HHHH----HHHHhCCcEEEEeecCC
Q 026207 106 EVIIVDEIGTEAE----AHAC----RSIAERGVMLIGTAHGE 139 (241)
Q Consensus 106 ~vlilDE~~~~~d----~~~~----~~~~~~g~~vi~t~H~~ 139 (241)
++|+|||++...+ ...+ ......|..+|+++|..
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 9999999976543 1122 22346688888888764
No 140
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.42 E-value=5.5e-07 Score=73.50 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=30.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
...++|+||||+||||+++.++..+... +.++.+++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~ 87 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIP 87 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 4579999999999999999999988654 56778877
No 141
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.41 E-value=1.4e-07 Score=88.85 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
-+.++|+||||||||||+++|+|...|
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CCeEEEECCCCChHHHHHHHHhCCCCC
Confidence 345999999999999999999999866
No 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.41 E-value=3.3e-07 Score=76.37 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=46.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+||||++++++..+. ..+++++ ..++... ..+ ......+..+..+....|.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~----~~~~~~~-~~~~~~~------~~~--------~~~~~~~~~~~~a~~~~~~ 100 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQ----VPFLAMA-GAEFVEV------IGG--------LGAARVRSLFKEARARAPC 100 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT----CCEEEEE-TTTTSSS------STT--------HHHHHHHHHHHHHHHTCSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC----CCEEEec-hHHHHhh------ccC--------hhHHHHHHHHHHHHhcCCe
Confidence 3589999999999999999999763 4566666 3333110 000 0112344566666677899
Q ss_pred EEEEcCCCCH
Q 026207 107 VIIVDEIGTE 116 (241)
Q Consensus 107 vlilDE~~~~ 116 (241)
+|+|||+...
T Consensus 101 vl~iDeid~l 110 (262)
T 2qz4_A 101 IVYIDEIDAV 110 (262)
T ss_dssp EEEEECC---
T ss_pred EEEEeCcchh
Confidence 9999999765
No 143
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.39 E-value=8.2e-07 Score=73.91 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=27.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc----CCCeEEEEcC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE----FQKRVVIVDT 63 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~----~g~~v~~i~~ 63 (241)
++.|+|||||||||+++.|++.+... ...++.+++.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~ 66 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQ 66 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeC
Confidence 79999999999999999999976321 0134566663
No 144
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.38 E-value=4.3e-07 Score=75.04 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=62.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcc-cCC---C-CCCccccccchhhcCCCCCcccHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE-IGG---D-GDIPHSAIGTARRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e-~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 102 (241)
.+++.|++|+||||++..++..+... |.+|++++-... ... . ...+..... ... ..+....+..+..++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~~~~~~al~~gl~~~~~~---~~~-~~~~~~~e~~l~~~L~ 82 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHGRAETEALLNGLPQQPLL---RTE-YRGMTLEEMDLDALLK 82 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTTCHHHHHHHTTSCBCCCE---EEE-ETTEEEEECCHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCCChhHHHHhcCccccCcc---eee-cCCcccccccHHHHHh
Confidence 48899999999999999999888655 677766652110 000 0 000000000 000 1111111111223333
Q ss_pred cCCcEEEEcCCCCHH--------hHHHHHHHHhCCcEEEEeecCC---Chhhhh
Q 026207 103 HMPEVIIVDEIGTEA--------EAHACRSIAERGVMLIGTAHGE---WLENII 145 (241)
Q Consensus 103 ~~p~vlilDE~~~~~--------d~~~~~~~~~~g~~vi~t~H~~---~~~~~~ 145 (241)
.+|+++|+||+.... -...+.....+|..+++|+|.. ++.+.+
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v 136 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQV 136 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHH
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHH
Confidence 689999999987531 1133344667899999998855 544554
No 145
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.38 E-value=9e-07 Score=80.25 Aligned_cols=73 Identities=19% Similarity=0.330 Sum_probs=50.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||||+|||+++++++..+. +..+++++ ..++... .. .......+..+..+....|
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~-~~~l~~~------~~--------g~~~~~~~~~f~~a~~~~~ 228 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSIS-SSDLVSK------WL--------GESEKLVKNLFQLARENKP 228 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEEC-CC-----------------------CCCTHHHHHHHHHHSCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEe-HHHHHhh------hc--------chHHHHHHHHHHHHHHcCC
Confidence 35799999999999999999999873 24667776 4433211 00 1113345667777777899
Q ss_pred cEEEEcCCCCH
Q 026207 106 EVIIVDEIGTE 116 (241)
Q Consensus 106 ~vlilDE~~~~ 116 (241)
.+|||||+...
T Consensus 229 ~vl~iDEid~l 239 (444)
T 2zan_A 229 SIIFIDEIDSL 239 (444)
T ss_dssp EEEEESCTTTT
T ss_pred eEEEEechHhh
Confidence 99999999755
No 146
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.37 E-value=1.9e-07 Score=77.92 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=43.7
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
+.| ++|+||||||||||++++++.+. ...++++ ..++... ..+ .........++.+....
T Consensus 49 ~~g-~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~-~~~~~~~------~~~--------~~~~~i~~~~~~~~~~~ 108 (254)
T 1ixz_A 49 PKG-VLLVGPPGVGKTHLARAVAGEAR----VPFITAS-GSDFVEM------FVG--------VGAARVRDLFETAKRHA 108 (254)
T ss_dssp CSE-EEEECCTTSSHHHHHHHHHHHTT----CCEEEEE-HHHHHHS------CTT--------HHHHHHHHHHHHHTTSS
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHhC----CCEEEee-HHHHHHH------Hhh--------HHHHHHHHHHHHHHhcC
Confidence 445 99999999999999999999875 2335554 2222100 000 00112334455555567
Q ss_pred CcEEEEcCCC
Q 026207 105 PEVIIVDEIG 114 (241)
Q Consensus 105 p~vlilDE~~ 114 (241)
|.++++||+.
T Consensus 109 ~~i~~~Deid 118 (254)
T 1ixz_A 109 PCIVFIDEID 118 (254)
T ss_dssp SEEEEEETHH
T ss_pred CeEEEehhhh
Confidence 8999999984
No 147
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.36 E-value=1.3e-06 Score=76.52 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=59.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCC--CCCcccHHHHHH----HH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQV--PEPSLQHKVMIE----AV 100 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~----~~ 100 (241)
.++|+||||+||||+++.+++.+.+..+..+++++...... +...... ...+.. ...+......+. .+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 120 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN-----FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL 120 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS-----HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC-----HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999988654235677776222110 0000000 011111 111222222222 22
Q ss_pred H-hcCCcEEEEcCCCCHHhHH---HHHHHH----h---CCcEEEEeecCCC
Q 026207 101 E-NHMPEVIIVDEIGTEAEAH---ACRSIA----E---RGVMLIGTAHGEW 140 (241)
Q Consensus 101 l-~~~p~vlilDE~~~~~d~~---~~~~~~----~---~g~~vi~t~H~~~ 140 (241)
. ..+|.+|+|||+... +.. .+.... . .+..+|+++|...
T Consensus 121 ~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 121 RERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred hhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 2 245889999999875 332 222222 2 4677888888764
No 148
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.36 E-value=2.8e-07 Score=79.88 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=50.5
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
+..-++|+||||+|||+++++++.... ..+++++ ..++... ..+ ......+..+..+...+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~----~~~~~v~-~~~l~~~------~~g--------~~~~~~~~~f~~a~~~~ 110 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN----STFFSVS-SSDLVSK------WMG--------ESEKLVKQLFAMARENK 110 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT----CEEEEEE-HHHHHTT------TGG--------GHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC----CCEEEEc-hHHHhhc------ccc--------hHHHHHHHHHHHHHhcC
Confidence 344699999999999999999998753 5667776 3333110 000 11234456677777889
Q ss_pred CcEEEEcCCCCH
Q 026207 105 PEVIIVDEIGTE 116 (241)
Q Consensus 105 p~vlilDE~~~~ 116 (241)
|.+|+|||+...
T Consensus 111 ~~vl~iDEid~l 122 (322)
T 3eie_A 111 PSIIFIDQVDAL 122 (322)
T ss_dssp SEEEEEECGGGG
T ss_pred CeEEEechhhhh
Confidence 999999998754
No 149
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.35 E-value=1.1e-06 Score=76.94 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=78.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCC---C------CCccccc--cc---------------
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGD---G------DIPHSAI--GT--------------- 80 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~---~------~~~~~~~--~~--------------- 80 (241)
.+++|.|+||+|||||+..++...... +.+|+|++ .+..... . .++...+ +.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fS-lEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~ 124 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFS-LEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDH 124 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEE-SSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEe-CCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999887654 67899987 4332100 0 0000000 00
Q ss_pred h--hhcCCC-CCcccHHHHHHH---HH-hc-CCcEEEEcCCCCHHhHH--------------HH-HHHHhCCcEEEEeec
Q 026207 81 A--RRMQVP-EPSLQHKVMIEA---VE-NH-MPEVIIVDEIGTEAEAH--------------AC-RSIAERGVMLIGTAH 137 (241)
Q Consensus 81 ~--~~~~~~-~~~~~~~~~~~~---~l-~~-~p~vlilDE~~~~~d~~--------------~~-~~~~~~g~~vi~t~H 137 (241)
. ..+.+. ..+.....+.+. +. .+ ++++||+|.++...... .+ ..|++.+++|++..|
T Consensus 125 l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQ 204 (338)
T 4a1f_A 125 LSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQ 204 (338)
T ss_dssp HHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 0 001111 123334433333 22 33 68999999987553221 11 246678999999999
Q ss_pred CCChhhh--hcCCccccccc------cccEEEe
Q 026207 138 GEWLENI--IKNPILSDLIG------GVDTVTL 162 (241)
Q Consensus 138 ~~~~~~~--~~~p~l~~l~~------~~d~V~~ 162 (241)
.+...+. -.+|.+.++-+ .+|.|++
T Consensus 205 l~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~ 237 (338)
T 4a1f_A 205 LNRSLENRDDKRPILSDIKDSGGIEQDADIVLF 237 (338)
T ss_dssp CCGGGGGSSSCSCCGGGSEETTEECCCCSEEEE
T ss_pred cCccccccccCCCChHhcccchhhhhhCcEEEE
Confidence 9863221 13466666532 2899988
No 150
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.35 E-value=1.2e-06 Score=70.72 Aligned_cols=107 Identities=15% Similarity=0.121 Sum_probs=60.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCCCCccccccc-hhhcCCCCCcccHHHHHHHHHhcC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
.+.+++||+|+||||.+..++...... |.+|+.+....... ....+.. ..+. .......+ ...+++.+. .+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~----~~~i~~~~~-~~ 81 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKN----SREILKYFE-ED 81 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-------CEEEC-TTSCEEECEEESS----STHHHHHCC-TT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCC----HHHHHHHHh-cc
Confidence 489999999999999999998887544 67777774111100 0000000 0010 00011111 113333222 25
Q ss_pred CcEEEEcCCCCH--HhHHHHHHHHhCCcEEEEeecCCC
Q 026207 105 PEVIIVDEIGTE--AEAHACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 105 p~vlilDE~~~~--~d~~~~~~~~~~g~~vi~t~H~~~ 140 (241)
.++|++||++-. ...+.+....+.|+.||.+.+.++
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMD 119 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 799999998764 122344455667999999888665
No 151
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.33 E-value=7.6e-07 Score=76.59 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=32.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..+++|+||||+||||++..+++.+.+..|.+|.+++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3489999999999999999999999865577888887
No 152
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.32 E-value=1.4e-06 Score=75.33 Aligned_cols=95 Identities=9% Similarity=0.159 Sum_probs=55.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+||||++++++..+... +.++++++ ..++. ...... +. .......... ..+++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~-~~~~~------~~~~~~---~~----~~~~~~~~~~--~~~~~ 100 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSS-ADDFA------QAMVEH---LK----KGTINEFRNM--YKSVD 100 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEE-HHHHH------HHHHHH---HH----HTCHHHHHHH--HHTCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEE-HHHHH------HHHHHH---HH----cCcHHHHHHH--hcCCC
Confidence 469999999999999999999988654 56788886 33221 000000 00 0011111221 13589
Q ss_pred EEEEcCCCCHHh---H-HHH----HHHHhCCcEEEEeecC
Q 026207 107 VIIVDEIGTEAE---A-HAC----RSIAERGVMLIGTAHG 138 (241)
Q Consensus 107 vlilDE~~~~~d---~-~~~----~~~~~~g~~vi~t~H~ 138 (241)
+|++||++.... . ..+ ......|..++++++.
T Consensus 101 vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 101 LLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999976532 1 111 1234566776666653
No 153
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.31 E-value=5.9e-07 Score=72.16 Aligned_cols=35 Identities=29% Similarity=0.223 Sum_probs=29.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+||||++++++..+... +.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE
Confidence 579999999999999999999988654 56777765
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.31 E-value=3.7e-07 Score=77.36 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=44.0
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
+.| ++|+||||||||||++++++.+. ...++++ ..++... ..+ .........++.+....
T Consensus 73 ~~g-vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~-~~~~~~~------~~~--------~~~~~i~~~~~~~~~~~ 132 (278)
T 1iy2_A 73 PKG-VLLVGPPGVGKTHLARAVAGEAR----VPFITAS-GSDFVEM------FVG--------VGAARVRDLFETAKRHA 132 (278)
T ss_dssp CCE-EEEECCTTSSHHHHHHHHHHHTT----CCEEEEE-HHHHHHS------TTT--------HHHHHHHHHHHHHHTSC
T ss_pred CCe-EEEECCCcChHHHHHHHHHHHcC----CCEEEec-HHHHHHH------Hhh--------HHHHHHHHHHHHHHhcC
Confidence 445 89999999999999999999875 2335554 2222100 000 00112334555555567
Q ss_pred CcEEEEcCCC
Q 026207 105 PEVIIVDEIG 114 (241)
Q Consensus 105 p~vlilDE~~ 114 (241)
|.++++||+.
T Consensus 133 ~~i~~iDeid 142 (278)
T 1iy2_A 133 PCIVFIDEID 142 (278)
T ss_dssp SEEEEEETHH
T ss_pred CcEEehhhhH
Confidence 8999999984
No 155
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.29 E-value=5e-07 Score=79.54 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=48.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
.-++|+||||+|||+++++++..+. ..+++++ ..++... . ........+..+..+....|.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~----~~~~~v~-~~~l~~~------~--------~g~~~~~~~~~f~~a~~~~~~ 145 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN----STFFSVS-SSDLVSK------W--------MGESEKLVKQLFAMARENKPS 145 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT----CEEEEEE-HHHHHSC------C-----------CHHHHHHHHHHHHHTSSE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC----CCEEEee-HHHHhhh------h--------cchHHHHHHHHHHHHHHcCCe
Confidence 3589999999999999999999873 4566665 3332110 0 011123345566667777899
Q ss_pred EEEEcCCCCH
Q 026207 107 VIIVDEIGTE 116 (241)
Q Consensus 107 vlilDE~~~~ 116 (241)
+|||||+...
T Consensus 146 vl~iDEid~l 155 (355)
T 2qp9_X 146 IIFIDQVDAL 155 (355)
T ss_dssp EEEEECGGGG
T ss_pred EEEEechHhh
Confidence 9999998755
No 156
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.29 E-value=4.1e-07 Score=78.22 Aligned_cols=91 Identities=16% Similarity=0.201 Sum_probs=54.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhh--cCCCC------CcccHHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARR--MQVPE------PSLQHKVMI 97 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~ 97 (241)
..+++++|++|+||||++..+++.+.+. +.+|..++.... ..... .+....... +.... +...++..+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~--~~~~~-~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQ--RPAAR-EQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSS--CHHHH-HHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcc--cHhHH-HHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 3488899999999999999999999876 677887763211 10000 000000011 11111 111234566
Q ss_pred HHHHhcCCcEEEEcCC-CCHHhHH
Q 026207 98 EAVENHMPEVIIVDEI-GTEAEAH 120 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~-~~~~d~~ 120 (241)
+.+...++|++|+|+| +...|..
T Consensus 174 ~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 174 EKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp HHHHHHTCCEEEEECCCCSSCCHH
T ss_pred HHHHhCCCCEEEEeCCCCccccHH
Confidence 6666689999999999 5555553
No 157
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.28 E-value=4e-07 Score=87.99 Aligned_cols=70 Identities=26% Similarity=0.380 Sum_probs=51.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||+|||+|+++++..+. ..++.++ ..++... .........+.++..+..+.|.+
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg----~~~~~v~-~~~l~sk--------------~~gese~~lr~lF~~A~~~~PsI 300 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETG----AFFFLIN-GPEIMSK--------------LAGESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTT----CEEEEEE-HHHHHSS--------------CTTHHHHHHHHHHHHHTTSCSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----CeEEEEE-hHHhhcc--------------cchHHHHHHHHHHHHHHHcCCeE
Confidence 589999999999999999998764 5667776 4443211 00111345677888898999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|||||+-+.
T Consensus 301 IfIDEiDal 309 (806)
T 3cf2_A 301 IFIDELDAI 309 (806)
T ss_dssp EEEESGGGT
T ss_pred EEEehhccc
Confidence 999997543
No 158
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.28 E-value=1.1e-06 Score=71.88 Aligned_cols=127 Identities=14% Similarity=0.136 Sum_probs=67.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCCCCccccccc-hhhcCCCCCcccHHHHHHHHHhcC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
.+.+++||.|+||||.+..++...... |.+|+++....... +...+... .+. .....+.+. ..+++.+ ..+
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~d~R~ge~~i~s~-~g~~~~a~~~~~~----~~~~~~~-~~~ 101 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCIDNRYSEEDVVSH-NGLKVKAVPVSAS----KDIFKHI-TEE 101 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC------------------CCEEECSSG----GGGGGGC-CSS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCCcchHHHHHhh-cCCeeEEeecCCH----HHHHHHH-hcC
Confidence 488999999999999999998877544 67887775221110 01111110 011 000111110 1111111 125
Q ss_pred CcEEEEcCCCCH--HhHHHHHHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 105 PEVIIVDEIGTE--AEAHACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 105 p~vlilDE~~~~--~d~~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
.++|+|||++-. ...+.+....+.|+.||.+.+.++..+-.=. ....|+.-||.|.
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~-~~~~Ll~~AD~Vt 159 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFG-QVPQLMAIAEHVT 159 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEECSBCTTSCBCT-THHHHHHHCSEEE
T ss_pred CCEEEEECcccCCHHHHHHHHHHhhCCCEEEEEecccccccCccc-cHHHHHHhcccEE
Confidence 799999999864 2224444556679999999887774332211 2223333377766
No 159
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.27 E-value=3e-07 Score=78.83 Aligned_cols=68 Identities=10% Similarity=0.181 Sum_probs=43.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH----Hhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV----ENH 103 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~ 103 (241)
.++|+||||+|||+++++++..+. ..+++++ ..++... ..+. .....+..+..+ ...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~----~~~i~v~-~~~l~~~------~~g~--------~~~~i~~~f~~a~~~~~~~ 98 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMG----INPIMMS-AGELESG------NAGE--------PAKLIRQRYREAAEIIRKG 98 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT----CCCEEEE-HHHHHCC---------H--------HHHHHHHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CCEEEEe-HHHhhhc------cCch--------hHHHHHHHHHHHHHHHhcC
Confidence 678899999999999999999873 4567776 3333111 0000 011222334333 356
Q ss_pred CCcEEEEcCCC
Q 026207 104 MPEVIIVDEIG 114 (241)
Q Consensus 104 ~p~vlilDE~~ 114 (241)
.|.+|+|||+.
T Consensus 99 ~~~vl~iDEiD 109 (293)
T 3t15_A 99 NMCCLFINDLD 109 (293)
T ss_dssp SCCCEEEECCC
T ss_pred CCeEEEEechh
Confidence 89999999994
No 160
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=98.27 E-value=3.6e-06 Score=67.91 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=69.6
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCCCCccccccch-hhcCCCCCcccHHHHHHHHHh
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAVEN 102 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 102 (241)
...+.+++||.||||||.|...++..... +.+++++....+.. ......+ .+.. .-.... .... +.+. .
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~~i~S~--~g~~~~A~~~~-~~~d---~~~~--~ 89 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSSSFCTH--DRNTMEALPAC-LLRD---VAQE--A 89 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGGSCCHH--HHHHSEEEEES-SGGG---GHHH--H
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchhhhhhc--cCCcccceecC-CHHH---HHHh--c
Confidence 34589999999999996666666655444 57888886221111 0111111 1100 000011 1111 1111 3
Q ss_pred cCCcEEEEcCCCCHHhH-HHHHHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 103 HMPEVIIVDEIGTEAEA-HACRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 103 ~~p~vlilDE~~~~~d~-~~~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
.+.|+|++||+|-..+. +.+..+.+.|+.||.+...++..+-.= |....|+.-+|.|.
T Consensus 90 ~~~DvIlIDEaQFfk~~ve~~~~L~~~gk~VI~~GL~~DF~~~~F-~~~~~Ll~~Ad~v~ 148 (195)
T 1w4r_A 90 LGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPF-GAILNLVPLAESVV 148 (195)
T ss_dssp HTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEEEESBCTTSSBC-TTGGGGGGGCSEEE
T ss_pred cCCCEEEEEchhhhHHHHHHHHHHHHCCCeEEEEecccccccccc-hhHHHHHHhcCeEE
Confidence 46899999999866322 233455688999999988887443321 23444444477766
No 161
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.27 E-value=3.7e-06 Score=71.76 Aligned_cols=37 Identities=30% Similarity=0.212 Sum_probs=28.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccC---CCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEF---QKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~---g~~v~~i~ 62 (241)
...++|+||||+||||+++.++..+.... ...+++++
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 34699999999999999999998875431 12566665
No 162
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.26 E-value=2.2e-07 Score=78.03 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=43.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-++|+||||+||||++++++.... ..+++++ ..++... ..+ ......+..+..+....|.+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~----~~~~~v~-~~~~~~~------~~~--------~~~~~~~~~~~~a~~~~~~v 106 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAH----VPFFSMG-GSSFIEM------FVG--------LGASRVRDLFETAKKQAPSI 106 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHT----CCCCCCC-SCTTTTS------CSS--------SCSSSSSTTHHHHHHSCSCE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhC----CCEEEec-hHHHHHh------hcc--------hHHHHHHHHHHHHHhcCCeE
Confidence 388999999999999999999764 2234333 2222110 000 01122334556666678999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|++||+...
T Consensus 107 l~iDEid~l 115 (268)
T 2r62_A 107 IFIDEIDAI 115 (268)
T ss_dssp EEESCGGGT
T ss_pred EEEeChhhh
Confidence 999999544
No 163
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.25 E-value=1.6e-06 Score=76.98 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=49.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||||+|||+++++++.... ..+++++ ..++... ..+ ......+..+..+...+|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~----~~~~~v~-~~~l~~~------~~g--------~~~~~~~~~~~~a~~~~~ 208 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN----ATFFNIS-AASLTSK------YVG--------EGEKLVRALFAVARELQP 208 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT----CEEEEEC-SCCC---------------------CHHHHHHHHHHHHHSSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc----CcEEEee-HHHhhcc------ccc--------hHHHHHHHHHHHHHhcCC
Confidence 35799999999999999999988753 5677777 4443211 000 112234556677777889
Q ss_pred cEEEEcCCCCH
Q 026207 106 EVIIVDEIGTE 116 (241)
Q Consensus 106 ~vlilDE~~~~ 116 (241)
.+|||||+...
T Consensus 209 ~il~iDEid~l 219 (389)
T 3vfd_A 209 SIIFIDQVDSL 219 (389)
T ss_dssp EEEEEETGGGG
T ss_pred eEEEEECchhh
Confidence 99999999644
No 164
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.24 E-value=8.1e-07 Score=77.53 Aligned_cols=35 Identities=29% Similarity=0.260 Sum_probs=29.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|+|||||||||+++.|++.+.+. +.+|.+..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g 164 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAA 164 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 389999999999999999999999887 44555554
No 165
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.24 E-value=1.2e-06 Score=77.18 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=48.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||||+||||++++++..+. ..++++. ..++... ..+ ......+..+..+...+|
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~----~~~~~i~-~~~l~~~------~~g--------~~~~~~~~~~~~a~~~~~ 177 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSG----ATFFSIS-ASSLTSK------WVG--------EGEKMVRALFAVARCQQP 177 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTT----CEEEEEE-GGGGCCS------STT--------HHHHHHHHHHHHHHHTCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC----CeEEEEe-hHHhhcc------ccc--------hHHHHHHHHHHHHHhcCC
Confidence 34799999999999999999998763 5667776 3333211 000 012234456666677889
Q ss_pred cEEEEcCCCC
Q 026207 106 EVIIVDEIGT 115 (241)
Q Consensus 106 ~vlilDE~~~ 115 (241)
.+|||||+..
T Consensus 178 ~vl~iDEid~ 187 (357)
T 3d8b_A 178 AVIFIDEIDS 187 (357)
T ss_dssp EEEEEETHHH
T ss_pred eEEEEeCchh
Confidence 9999999843
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=3.6e-06 Score=65.72 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=27.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~ 62 (241)
..++|+||+|+||||+++.++..+... .+..+++++
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 468999999999999999999987531 134556555
No 167
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=98.22 E-value=6.6e-06 Score=68.06 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=69.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccc-hhhcCCCCCcccHHHHHHHHHhcC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGT-ARRMQVPEPSLQHKVMIEAVENHM 104 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 104 (241)
..+.+++||.|+||||.+...+...... |.+++.+....+......+... .+. .....+.+. ..+++.+ .+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~----~di~~~~--~~ 90 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLL----RDVAQEA--LG 90 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEETTCCCC------------CEEEEESSG----GGGHHHH--TT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCH----HHHHHHh--cc
Confidence 3489999999999999888877766544 6777776511111000111111 111 001111111 1123322 56
Q ss_pred CcEEEEcCCCCHHhHHH-HHHHHhCCcEEEEeecCCChhhhhcCCccccccccccEEE
Q 026207 105 PEVIIVDEIGTEAEAHA-CRSIAERGVMLIGTAHGEWLENIIKNPILSDLIGGVDTVT 161 (241)
Q Consensus 105 p~vlilDE~~~~~d~~~-~~~~~~~g~~vi~t~H~~~~~~~~~~p~l~~l~~~~d~V~ 161 (241)
.|+|+|||++-..+... +..+.+.|+.||.+.+.++..+-.= +....|+.-+|.|.
T Consensus 91 ~dvViIDEaQF~~~v~el~~~l~~~gi~VI~~GL~~DF~~~~F-~~~~~Ll~~AD~Vt 147 (234)
T 2orv_A 91 VAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPF-GAILNLVPLAESVV 147 (234)
T ss_dssp CSEEEESSGGGCTTHHHHHHHHHHTTCEEEEECCSBCTTSSBC-TTGGGGGGGCSEEE
T ss_pred CCEEEEEchhhhhhHHHHHHHHHhCCCEEEEEecccccccCCc-ccHHHHHHhcccEE
Confidence 89999999986654432 3345668999999988877433221 13333433377766
No 168
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.20 E-value=9e-07 Score=81.01 Aligned_cols=86 Identities=22% Similarity=0.289 Sum_probs=49.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCcc-ccccchhhcCCCC------CcccHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPH-SAIGTARRMQVPE------PSLQHKVMIEAV 100 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~ 100 (241)
+++|+||||||||||++.|++.+.+. +.+|.+.. ...... ....+ ...+....+.+.. ........+..+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g-~D~~r~-aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAA-GDTFRA-AAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEC-CCTTCH-HHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEec-Ccccch-hhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 89999999999999999999999877 44555543 221100 00000 0000001111111 122344455556
Q ss_pred HhcCCcEEEEcCCCCH
Q 026207 101 ENHMPEVIIVDEIGTE 116 (241)
Q Consensus 101 l~~~p~vlilDE~~~~ 116 (241)
...+.|++|+|-++..
T Consensus 372 ~~~~~DvVLIDTaGrl 387 (503)
T 2yhs_A 372 KARNIDVLIADTAGRL 387 (503)
T ss_dssp HHTTCSEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCcc
Confidence 6678899999988763
No 169
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.19 E-value=3.1e-06 Score=73.52 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=25.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|.||||+|||||+.+++.. . |.+++|++
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~--~--G~~VlyIs 155 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA--L--GGKDKYAT 155 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH--H--HTTSCCEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh--C--CCCEEEEE
Confidence 36899999999999999999886 2 34556665
No 170
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.19 E-value=2.1e-06 Score=66.38 Aligned_cols=68 Identities=16% Similarity=0.081 Sum_probs=51.3
Q ss_pred hcCCCCCcccHHHHHH------HHHhcCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCChhhhhcCCc
Q 026207 83 RMQVPEPSLQHKVMIE------AVENHMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEWLENIIKNPI 149 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~------~~l~~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~~~~~~~~p~ 149 (241)
....+|+|++++..++ +++..+|+++++|||++++|+.... .....|.++++++|...
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--------- 124 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--------- 124 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG---------
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH---------
Confidence 3456788999998775 6778899999999999999995433 22345789999999863
Q ss_pred cccccccccEEEe
Q 026207 150 LSDLIGGVDTVTL 162 (241)
Q Consensus 150 l~~l~~~~d~V~~ 162 (241)
+..+ ||+++.
T Consensus 125 ~~~~---~d~ii~ 134 (148)
T 1f2t_B 125 LKDA---ADHVIR 134 (148)
T ss_dssp GGGG---CSEEEE
T ss_pred HHHh---CCEEEE
Confidence 3345 777765
No 171
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.19 E-value=6.3e-07 Score=82.45 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=44.4
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
.+.| ++|+||||+|||||++++++... ...++++ ..++... ..+. .....+..++.+...
T Consensus 63 ip~G-vLL~GppGtGKTtLaraIa~~~~----~~~i~i~-g~~~~~~------~~g~--------~~~~v~~lfq~a~~~ 122 (499)
T 2dhr_A 63 IPKG-VLLVGPPGVGKTHLARAVAGEAR----VPFITAS-GSDFVEM------FVGV--------GAARVRDLFETAKRH 122 (499)
T ss_dssp CCSE-EEEECSSSSSHHHHHHHHHHHTT----CCEEEEE-GGGGTSS------CTTH--------HHHHHHHHTTTSSSS
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHhC----CCEEEEe-hhHHHHh------hhhh--------HHHHHHHHHHHHHhc
Confidence 3445 89999999999999999999874 3457776 4443211 0000 011122333333345
Q ss_pred CCcEEEEcCCC
Q 026207 104 MPEVIIVDEIG 114 (241)
Q Consensus 104 ~p~vlilDE~~ 114 (241)
.|.++++||+.
T Consensus 123 ~p~il~IDEId 133 (499)
T 2dhr_A 123 APCIVFIDEID 133 (499)
T ss_dssp SSCEEEEECGG
T ss_pred CCCEEEEehHH
Confidence 68999999984
No 172
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.19 E-value=2.7e-07 Score=83.11 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=27.1
Q ss_pred eeCcceeeccE---EEEEeCCCchHHHHHHHHHHhccc
Q 026207 18 LYSINKIIFDF---FLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 18 ~~~~~~~~~g~---vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
.++......++ ++|+||||+|||||++.+++...+
T Consensus 20 ~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 20 QVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp CTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred eECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 34444555664 799999999999999999998753
No 173
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.15 E-value=7.4e-07 Score=77.85 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=29.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccC--CCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEF--QKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~--g~~v~~i~ 62 (241)
...++|+||||+|||||++.+++.+.+.. +..+++++
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 34799999999999999999999876532 35677776
No 174
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.15 E-value=1.3e-06 Score=68.20 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=25.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
+++|.||||||||||++.+++.+ +..|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 89999999999999999999999 66443
No 175
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.12 E-value=1.3e-06 Score=73.60 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=44.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPE 106 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 106 (241)
..++|+||||+||||++++++.... ..++.+..+.++.+.. .. ......+..+..+...++.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~----~~~~~i~~~~~~~g~~-----~~---------~~~~~~~~~~~~~~~~~~~ 126 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESN----FPFIKICSPDKMIGFS-----ET---------AKCQAMKKIFDDAYKSQLS 126 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT----CSEEEEECGGGCTTCC-----HH---------HHHHHHHHHHHHHHTSSEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC----CCEEEEeCHHHhcCCc-----hH---------HHHHHHHHHHHHHHhcCCc
Confidence 4799999999999999999999743 4556665333221100 00 0011233445555556789
Q ss_pred EEEEcCCCC
Q 026207 107 VIIVDEIGT 115 (241)
Q Consensus 107 vlilDE~~~ 115 (241)
+|+|||+..
T Consensus 127 vl~iDEid~ 135 (272)
T 1d2n_A 127 CVVVDDIER 135 (272)
T ss_dssp EEEECCHHH
T ss_pred EEEEEChhh
Confidence 999999754
No 176
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.12 E-value=2.1e-06 Score=73.28 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=29.9
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+.+.++|+||||+||||++++++..+... +..+++++
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~ 82 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID 82 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEE
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEee
Confidence 34689999999999999999999988654 34566666
No 177
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.11 E-value=1.6e-06 Score=83.90 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=51.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||||||.+.++++.... ..++.+. ..++... .+...+...+.++..+....|.+
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~----~~f~~v~-~~~l~s~--------------~vGese~~vr~lF~~Ar~~~P~I 573 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQ----ANFISIK-GPELLTM--------------WFGESEANVREIFDKARQAAPCV 573 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTT----CEEEECC-HHHHHTT--------------TCSSCHHHHHHHHHHHHTTCSEE
T ss_pred eEEEecCCCCCchHHHHHHHHHhC----CceEEec-cchhhcc--------------ccchHHHHHHHHHHHHHHcCCce
Confidence 489999999999999999999874 4556665 4443111 11122456778899999999999
Q ss_pred EEEcCCCCH
Q 026207 108 IIVDEIGTE 116 (241)
Q Consensus 108 lilDE~~~~ 116 (241)
|++||+.+.
T Consensus 574 ifiDEiDsl 582 (806)
T 3cf2_A 574 LFFDELDSI 582 (806)
T ss_dssp EECSCGGGC
T ss_pred eechhhhHH
Confidence 999998643
No 178
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.09 E-value=1.7e-06 Score=70.03 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=24.0
Q ss_pred ceeecc-EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 22 NKIIFD-FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 22 ~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+..| ++.|+||||||||||++.|++.++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345555 899999999999999999999984
No 179
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.09 E-value=1.6e-06 Score=68.42 Aligned_cols=44 Identities=23% Similarity=0.076 Sum_probs=31.9
Q ss_pred EEEEEeEEee-Ccc--eeeccEEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 10 LIVKFFYALY-SIN--KIIFDFFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 10 ~~~r~~~~~~-~~~--~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
+.++.+...- ... ....++++|+|||||||||++.+|...+.+.
T Consensus 7 l~i~nf~~~~~~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 7 LELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp EEEESBGGGCSSCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred EEEeCeEeecCccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3466664321 332 3445699999999999999999999987644
No 180
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.07 E-value=1.2e-05 Score=69.87 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=31.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++++||||+||||++..+++.+.+. +.+|+.++
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 489999999999999999999999876 67888876
No 181
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.06 E-value=1.8e-06 Score=78.51 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=47.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH---Hhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV---ENH 103 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~ 103 (241)
.-++|+||||+|||+++++++..+... ..++.++ ..++... ..+ ........+..+ ...
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l~~~--~~~~~~~-~~~~~~~------~~~---------~~~~~~~~f~~a~~~~~~ 125 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELGSK--VPFCPMV-GSEVYST------EIK---------KTEVLMENFRRAIGLRIK 125 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCTT--SCEEEEE-GGGGCCS------SSC---------HHHHHHHHHHHTEEEEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhCCC--ceEEEEe-HHHHHHH------hhh---------hhHHHHHHHHHHHhhhhc
Confidence 369999999999999999999998643 4567766 4443211 000 011234455555 556
Q ss_pred CCcEEEEcCCCC
Q 026207 104 MPEVIIVDEIGT 115 (241)
Q Consensus 104 ~p~vlilDE~~~ 115 (241)
.|.+||+||+.+
T Consensus 126 ~~~il~iDEid~ 137 (456)
T 2c9o_A 126 ETKEVYEGEVTE 137 (456)
T ss_dssp EEEEEEEEEEEE
T ss_pred CCcEEEEechhh
Confidence 799999999843
No 182
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.06 E-value=5.8e-06 Score=72.22 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=29.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcccc-----CCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDE-----FQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~ 62 (241)
...++|+||||+||||+++.++..+... .+..+++++
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3479999999999999999999987442 135667776
No 183
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.04 E-value=1.6e-06 Score=78.29 Aligned_cols=86 Identities=17% Similarity=0.145 Sum_probs=51.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC--CC--Cccc----HHHHH
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV--PE--PSLQ----HKVMI 97 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~--~~--~~~~----~~~~~ 97 (241)
..+++++||||+||||++..|+..+.+. |.+|.+++... ... .. ..+......+..+ .. .+.. ....+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~-~r~-~a-~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADV-YRP-AA-YDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECC-SCH-HH-HHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCc-cch-hH-HHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 3489999999999999999999999776 77888776221 100 00 0000000011111 11 1112 23345
Q ss_pred HHHHhcCCcEEEEcCCCC
Q 026207 98 EAVENHMPEVIIVDEIGT 115 (241)
Q Consensus 98 ~~~l~~~p~vlilDE~~~ 115 (241)
+.+...++|++|+|+++.
T Consensus 173 ~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp HHTTTTTCSEEEEEECCC
T ss_pred HHHHhcCCCEEEEECCCC
Confidence 555567899999999985
No 184
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.04 E-value=1.5e-05 Score=83.25 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=68.3
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCC------CcccHHHHHH
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPE------PSLQHKVMIE 98 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 98 (241)
+..+++|.|+||+|||||+.+++...... +.+++|++ .++.... .. +.++.... .......+++
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~-g~~VlyiS-~Ees~~q------l~--A~rlG~~~~~l~i~~~~~i~~i~~ 800 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFID-AEHALDP------IY--ARKLGVDIDNLLCSQPDTGEQALE 800 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEC-TTSCCCH------HH--HHHTTCCTTTCEEECCSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEE-CCCcHHH------HH--HHHcCCCccceEEecCCCHHHHHH
Confidence 33489999999999999999999988654 56899998 6554321 11 11222111 1233444444
Q ss_pred HHHh----cCCcEEEEcCCCCHHh----------------HHHH--------HHHHhCCcEEEEeecCCC
Q 026207 99 AVEN----HMPEVIIVDEIGTEAE----------------AHAC--------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 99 ~~l~----~~p~vlilDE~~~~~d----------------~~~~--------~~~~~~g~~vi~t~H~~~ 140 (241)
.+.. ..|+++|+|+++.... .+.+ ..+++.+++||++.|.+.
T Consensus 801 ~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r 870 (2050)
T 3cmu_A 801 ICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 870 (2050)
T ss_dssp HHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEE
T ss_pred HHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccc
Confidence 3332 6899999999764432 1111 135568999999999875
No 185
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.03 E-value=2.7e-06 Score=68.90 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=29.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++.|+||||||||||++.|++.+.+. |..+.++.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~ 57 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVP 57 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEe
Confidence 3489999999999999999999999764 43445554
No 186
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.03 E-value=3.1e-06 Score=77.67 Aligned_cols=67 Identities=28% Similarity=0.445 Sum_probs=47.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
-+||+||||+|||+++++++.... ..+++++ ..++... ..+ ......+..+..+....|.+
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~----~~fv~vn-~~~l~~~------~~g--------~~~~~~~~~f~~A~~~~p~i 300 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETG----AFFFLIN-GPEIMSK------LAG--------ESESNLRKAFEEAEKNAPAI 300 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS----SEEEEEE-HHHHHTS------CTT--------HHHHHHHHHHHHHHHTCSEE
T ss_pred cEEEECcCCCCHHHHHHHHHHHhC----CCEEEEE-chHhhhh------hcc--------hhHHHHHHHHHHHHhcCCcE
Confidence 599999999999999999998763 5677776 3333111 000 01223456677788888999
Q ss_pred EEEcCC
Q 026207 108 IIVDEI 113 (241)
Q Consensus 108 lilDE~ 113 (241)
|||||+
T Consensus 301 LfLDEI 306 (489)
T 3hu3_A 301 IFIDEL 306 (489)
T ss_dssp EEEESH
T ss_pred EEecch
Confidence 999998
No 187
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.03 E-value=2.2e-06 Score=68.20 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=24.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
++.|+|||||||||+++.|++.+++..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 68899999999999999999998755333
No 188
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.02 E-value=4e-06 Score=72.40 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=30.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc-ccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS-DEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~-~~~g~~v~~i~ 62 (241)
...++|+||||+|||+|+.+++..+. .. +.++.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-CCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 35789999999999999999999886 44 67777776
No 189
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.02 E-value=2.8e-06 Score=82.52 Aligned_cols=68 Identities=28% Similarity=0.439 Sum_probs=47.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCCcE
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMPEV 107 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~v 107 (241)
.++|+|||||||||+++++++.+. ..++.++ ..++... ..+ ......+..++.+....|.+
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~----~~~i~v~-~~~l~~~------~~g--------~~~~~l~~vf~~a~~~~p~i 300 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETG----AFFFLIN-GPEIMSK------LAG--------ESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTT----CEEEEEE-HHHHSSS------STT--------HHHHHHHHHHHHHHHHCSEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC----CcEEEEE-chHhhhh------hhh--------hHHHHHHHHHHHHHhcCCcE
Confidence 699999999999999999999874 3456666 3333111 000 01234556777778889999
Q ss_pred EEEcCCC
Q 026207 108 IIVDEIG 114 (241)
Q Consensus 108 lilDE~~ 114 (241)
+++||+.
T Consensus 301 l~iDEid 307 (806)
T 1ypw_A 301 IFIDELD 307 (806)
T ss_dssp EEEESGG
T ss_pred EEeccHH
Confidence 9999983
No 190
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.00 E-value=3.4e-06 Score=65.86 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.5
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
...++|+||+|+||||+++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999998754
No 191
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.00 E-value=3.2e-06 Score=67.69 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=23.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|||||||||+++.|++..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4899999999999999999999864
No 192
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.98 E-value=6.7e-06 Score=76.40 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=24.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
...++|+||||+||||+++++++.+.+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 448999999999999999999998853
No 193
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.94 E-value=2.4e-05 Score=62.37 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+||+|+||||+++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 499999999999999999998763
No 194
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.94 E-value=8.9e-06 Score=73.57 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=51.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCC--C--CCccc----HHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQV--P--EPSLQ----HKVMIE 98 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~--~--~~~~~----~~~~~~ 98 (241)
.+++++|+||+||||++..|+..+... |.+|+.++... ... .. ..+......+..+ . ..+.. .+..++
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~-~R~-aa-~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDT-WRP-GA-YHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCC-SST-HH-HHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCC-cch-hH-HHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 489999999999999999999988765 78888887221 110 00 0000000011111 1 11112 234555
Q ss_pred HHHhcCCcEEEEcCCCCH
Q 026207 99 AVENHMPEVIIVDEIGTE 116 (241)
Q Consensus 99 ~~l~~~p~vlilDE~~~~ 116 (241)
.+...++|++|+|.++..
T Consensus 177 ~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHTTCSEEEEECCCCS
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 666678999999998743
No 195
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.92 E-value=2.4e-05 Score=68.32 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=28.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEE
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIV 61 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i 61 (241)
.++.|+||||||||||++.+++.+.+.. .++.++
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~-g~v~i~ 89 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAG-HKVAVL 89 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCC-CEEEEE
Confidence 4899999999999999999999988763 445444
No 196
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.91 E-value=5.8e-06 Score=67.95 Aligned_cols=29 Identities=10% Similarity=0.321 Sum_probs=24.6
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
...| +++|+||||||||||++.|++..++
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3344 8999999999999999999999874
No 197
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.90 E-value=8.9e-06 Score=62.07 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=25.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
-++|+||||+|||++++.+....... +..++ ++
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~-~~~~v-~~ 58 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNA-QGEFV-YR 58 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTT-TSCCE-EE
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCcc-CCCEE-EE
Confidence 58999999999999999999876543 33444 54
No 198
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.90 E-value=4.2e-05 Score=69.37 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..++|+||||+||||+++.++....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3699999999999999999999874
No 199
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.90 E-value=1e-05 Score=73.97 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=27.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
.++.|+||||||||||+++|++.+.++.|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 799999999999999999999999887554
No 200
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.89 E-value=3.7e-05 Score=66.07 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=26.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..+++.||||+||||++++++..+. ..+++++
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~----~~~~~i~ 80 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVN----ADMMFVN 80 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTT----EEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhC----CCEEEEc
Confidence 4788999999999999999998874 4567776
No 201
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.89 E-value=2.4e-05 Score=75.26 Aligned_cols=73 Identities=21% Similarity=0.280 Sum_probs=47.0
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
.+.+.++|+||||+|||+++++++..+... +..+++++ ..++...... +.+ .....+...
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~-~s~~~~~~~~--------------~~~----~l~~~~~~~ 578 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFGD-EESMIRID-MSEYMEKHST--------------SGG----QLTEKVRRK 578 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEE-GGGGCSSCCC--------------C-------CHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEe-chhccccccc--------------ccc----hhhHHHHhC
Confidence 344579999999999999999999987433 46778887 4444221100 011 112233345
Q ss_pred CCcEEEEcCCCCH
Q 026207 104 MPEVIIVDEIGTE 116 (241)
Q Consensus 104 ~p~vlilDE~~~~ 116 (241)
.+.++++||+...
T Consensus 579 ~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 579 PYSVVLLDAIEKA 591 (758)
T ss_dssp SSSEEEEECGGGS
T ss_pred CCeEEEEeCcccc
Confidence 6689999999644
No 202
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.88 E-value=1.3e-05 Score=73.84 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=28.5
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
...++|+||||+||||++++++..+ +..+++++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEe
Confidence 3589999999999999999999987 35777776
No 203
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.87 E-value=6.2e-06 Score=65.33 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
+++|+|||||||||+++.|++.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999997
No 204
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.87 E-value=1.5e-05 Score=69.64 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=27.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+||||+++.++..+... ...+.+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~--~~~~~~~ 104 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPD--TPFTAIA 104 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSS--CCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccc--CCccccc
Confidence 379999999999999999999988643 3444444
No 205
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.87 E-value=1.2e-05 Score=70.38 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=29.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------C-CCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------F-QKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~-g~~v~~i~ 62 (241)
..++|+||||+||||+++.++..+... . +..+++++
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 479999999999999999999987332 1 46777776
No 206
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.87 E-value=4.8e-05 Score=65.69 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=25.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++|+||||+||||+++.++.... ..++.+.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~----~~~~~~~ 87 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS----ANIKTTA 87 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT----CCEEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC----CCeEEec
Confidence 689999999999999999988764 3445554
No 207
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.86 E-value=8.2e-06 Score=64.56 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=23.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+++|+||||||||||++.|++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999875
No 208
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.86 E-value=9.1e-06 Score=65.28 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=28.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.|.|||||||||+++.|++.+. ..|..+++++
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d 60 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILD 60 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEec
Confidence 3899999999999999999999987 4355445666
No 209
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.85 E-value=7.6e-06 Score=65.98 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=26.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.|+|||||||||+++.|++.+.+ ++.+++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~ 38 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGE----RVALLP 38 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEe
Confidence 37999999999999999999998764 345555
No 210
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.84 E-value=6.8e-05 Score=65.99 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=27.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
...++|+||||+||||+++.++..+. ..++.++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~----~~~~~~~ 104 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD----IPIAISD 104 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT----CCEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC----CCEEEec
Confidence 44699999999999999999999873 4556665
No 211
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.84 E-value=6.7e-06 Score=66.23 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..++|+||||||||||++.|++.++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999999875
No 212
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.84 E-value=1.9e-05 Score=64.71 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=53.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccC-CCCCCccccccch-hhcCCCCCcccHHHHHHHHHhc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIG-GDGDIPHSAIGTA-RRMQVPEPSLQHKVMIEAVENH 103 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 103 (241)
..+.+++||.||||||.+...+...... +.+++.+....+-. ....+.. ..+.. .-..+.+. ..++.. +..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~-g~kvli~kp~~D~R~~~~~I~S-r~G~~~~a~~v~~~----~di~~~-i~~ 100 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA-KQKVVVFKPAIDDRYHKEKVVS-HNGNAIEAINISKA----SEIMTH-DLT 100 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEEC-----------C-BTTBCCEEEEESSG----GGGGGS-CCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc-CCceEEEEeccCCcchhhhHHH-hcCCceeeEEeCCH----HHHHHH-Hhc
Confidence 3489999999999999554444444333 56666654111111 1110000 01100 00000000 011111 135
Q ss_pred CCcEEEEcCCCCHHh--HHHHHHHHhCCcEEEEeecCCC
Q 026207 104 MPEVIIVDEIGTEAE--AHACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 104 ~p~vlilDE~~~~~d--~~~~~~~~~~g~~vi~t~H~~~ 140 (241)
++++|++||.|-..+ .+.+....+.|+.|+...=.++
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la~~gi~Vi~~GLd~D 139 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMD 139 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEechhcCCHHHHHHHHHHHHCCCEEEEeecccc
Confidence 789999999985532 2344455578999888544444
No 213
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.83 E-value=3e-05 Score=62.55 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=31.9
Q ss_pred eeeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 23 KIIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 23 ~~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
....|.+++.++||.||||....++-..... |.+|.++.
T Consensus 25 ~~~~g~i~v~tG~GkGKTTaA~GlalRA~g~-G~rV~~vQ 63 (196)
T 1g5t_A 25 QEERGIIIVFTGNGKGKTTAAFGTAARAVGH-GKNVGVVQ 63 (196)
T ss_dssp --CCCCEEEEESSSSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 4467899999999999999999888777655 78998884
No 214
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.82 E-value=3.1e-06 Score=82.16 Aligned_cols=71 Identities=21% Similarity=0.278 Sum_probs=48.5
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHHhcCC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVENHMP 105 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 105 (241)
...++|+||||+||||+++++++.+.. .++.++ ..++... .+.......+..++.+....|
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~----~~i~v~-~~~l~~~--------------~~g~~~~~i~~~f~~a~~~~p 571 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA----NFISIK-GPELLTM--------------WFGESEANVREIFDKARQAAP 571 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTC----CCCCCC-CSSSTTC--------------CTTTSSHHHHHHHHHHHHHCS
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCC----CEEEEe-chHhhhh--------------hcCccHHHHHHHHHHHHhcCC
Confidence 346899999999999999999998742 334444 3333111 011113345667888888899
Q ss_pred cEEEEcCCCC
Q 026207 106 EVIIVDEIGT 115 (241)
Q Consensus 106 ~vlilDE~~~ 115 (241)
.++|+||+..
T Consensus 572 ~vl~iDEid~ 581 (806)
T 1ypw_A 572 CVLFFDELDS 581 (806)
T ss_dssp BCCCCSSHHH
T ss_pred eEEEEEChhh
Confidence 9999999743
No 215
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.82 E-value=1.2e-05 Score=61.26 Aligned_cols=23 Identities=17% Similarity=-0.086 Sum_probs=20.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+||||+|||++++.++...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 58999999999999999887754
No 216
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.81 E-value=1e-06 Score=72.94 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=27.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
++++|+||||||||||+++|++.+.++.|.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~ 57 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTL 57 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCe
Confidence 688999999999999999999999888554
No 217
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.81 E-value=9.6e-06 Score=63.16 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|||||||||+++.|++.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999999874
No 218
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.80 E-value=9.2e-06 Score=66.45 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=23.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||||||||||++.|++..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3899999999999999999999883
No 219
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.78 E-value=2.3e-05 Score=66.48 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=26.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+||||+++.++..+. ..+++++
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~----~~~~~i~ 82 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLAN----APFIKVE 82 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT----CCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEc
Confidence 4689999999999999999999873 3556666
No 220
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.76 E-value=1.3e-05 Score=63.55 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.+++|+|||||||||+++.|++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 36899999999999999999974
No 221
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.76 E-value=1.2e-05 Score=64.57 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=22.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|+|||||||||+++.|++.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999999987
No 222
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.75 E-value=2e-05 Score=67.88 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=27.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc--ccCCCeEEEE
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS--DEFQKRVVIV 61 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~--~~~g~~v~~i 61 (241)
.++.|+||||||||||++.|++.+. +..| .+.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G-~i~vi 116 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHR-RVELI 116 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCC-CEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCC-eEEEE
Confidence 3899999999999999999999886 5534 34444
No 223
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.74 E-value=1.5e-05 Score=64.49 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=24.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
..+++|+|||||||||+++.|++.+++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 348999999999999999999998864
No 224
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.74 E-value=5.2e-06 Score=66.57 Aligned_cols=47 Identities=9% Similarity=-0.041 Sum_probs=26.3
Q ss_pred CccccceeeEEEEEeEEeeCcceeecc-EEEEEeCCCchHHHHHHHHHHhc
Q 026207 1 MLRLRNVFLLIVKFFYALYSINKIIFD-FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~~g-~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
||+++|+.... -...+.......+ .++|+|+||||||||++.+++..
T Consensus 3 ~l~~~~~~~~~---~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVM---SAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEE---EESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhhee---ecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47778876322 1123333444444 59999999999999999998865
No 225
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.73 E-value=1.7e-05 Score=68.79 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=29.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccC------CCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEF------QKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~------g~~v~~i~ 62 (241)
.+.++|+||||+|||++++.++..+.... ...++++.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN 87 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID 87 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe
Confidence 34799999999999999999999885321 23567776
No 226
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.73 E-value=1.6e-05 Score=63.53 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=23.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
+++|+|||||||||+++.|++.+.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 89999999999999999999988443
No 227
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.72 E-value=7.9e-06 Score=71.76 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=27.1
Q ss_pred eeecc-EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 23 KIIFD-FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 23 ~~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.+..| .++|+||||||||||+++|++...++
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34444 89999999999999999999999877
No 228
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.71 E-value=1.1e-05 Score=66.31 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=16.0
Q ss_pred cEEEEEeCCCchHHHHHHHHH-Hhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIA-RVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~-~~l~ 51 (241)
.++.|+|||||||||+++.|+ +.++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 389999999999999999999 8864
No 229
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.71 E-value=5.3e-05 Score=64.81 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=25.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+||||+++.++..+. ..+.++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~----~~~~~~~ 70 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG----VNLRVTS 70 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT----CCEEEEC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC----CCEEEEe
Confidence 4689999999999999999998763 3445554
No 230
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.71 E-value=2.4e-05 Score=62.87 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=28.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.|+|++||||||+++.+++.+.+. +..+.+.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~~ 57 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFH 57 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEec
Confidence 389999999999999999999988665 34555553
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.70 E-value=5.4e-05 Score=73.87 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=32.3
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCccc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEI 67 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~ 67 (241)
+.+.++|+||||+|||+++++++..+... +..+++++ ..++
T Consensus 587 p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-~~~~i~i~-~~~~ 627 (854)
T 1qvr_A 587 PIGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRID-MTEY 627 (854)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHHSS-GGGEEEEC-TTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCC-CCcEEEEe-chhc
Confidence 34689999999999999999999988543 35678887 4444
No 232
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.70 E-value=1.7e-05 Score=65.76 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=20.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
.+++|+|||||||||+++.|+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999993
No 233
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.68 E-value=0.00012 Score=66.59 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=58.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (241)
+.++|+||||+||||+++.++..+... .+.+++.++-.. . .. .......+..+..+
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------~------~~--g~~e~~~~~~~~~~ 263 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------K------YR--GEFEDRLKKVMDEI 263 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc----------c------cc--chHHHHHHHHHHHH
Confidence 368999999999999999999987432 123333333110 0 00 00123455666777
Q ss_pred HhcCCcEEEEcCCCCHHhHH-HHHHHHhCC-cEEEEeecCCChhhhhc-CCccccccccccEEEe
Q 026207 101 ENHMPEVIIVDEIGTEAEAH-ACRSIAERG-VMLIGTAHGEWLENIIK-NPILSDLIGGVDTVTL 162 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~-~~~~~~~~g-~~vi~t~H~~~~~~~~~-~p~l~~l~~~~d~V~~ 162 (241)
...+|.++|+| ...++. .+......| ..+|+++........+. .|.+..- ++.|.+
T Consensus 264 ~~~~~~iLfiD---~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~R---f~~i~v 322 (468)
T 3pxg_A 264 RQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR---FQPIQV 322 (468)
T ss_dssp HTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHS---EEEEEC
T ss_pred HhcCCeEEEEe---CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHh---Ccccee
Confidence 66788999999 222332 222223334 56777666554333332 2334333 565555
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.68 E-value=7.2e-05 Score=71.90 Aligned_cols=81 Identities=23% Similarity=0.296 Sum_probs=47.7
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcc--c-HHHHHHHH
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSL--Q-HKVMIEAV 100 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~ 100 (241)
.+.+.++|+||||+|||++++.++..+. ..++.++ ..++...... ... ++...+.. . .......+
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~----~~~~~i~-~s~~~~~~~~-~~l------~g~~~g~~g~~~~~~l~~~~ 553 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALG----IELLRFD-MSEYMERHTV-SRL------IGAPPGYVGFDQGGLLTDAV 553 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHT----CEEEEEE-GGGCSSSSCC-SSS------CCCCSCSHHHHHTTHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhc----CCEEEEe-chhhcchhhH-hhh------cCCCCCCcCccccchHHHHH
Confidence 4556899999999999999999999873 5677777 4444221100 000 11111110 0 11123333
Q ss_pred HhcCCcEEEEcCCCCH
Q 026207 101 ENHMPEVIIVDEIGTE 116 (241)
Q Consensus 101 l~~~p~vlilDE~~~~ 116 (241)
....+.++++||+...
T Consensus 554 ~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 554 IKHPHAVLLLDEIEKA 569 (758)
T ss_dssp HHCSSEEEEEETGGGS
T ss_pred HhCCCcEEEEeCcccc
Confidence 4455689999999754
No 235
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.68 E-value=2.5e-05 Score=60.12 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.2
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
...++.+|+|||||||||++.++.-.+
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 335699999999999999999998654
No 236
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.67 E-value=3e-05 Score=70.04 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=31.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++++|+||+||||++..|+..+... |.+|.+++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEe
Confidence 389999999999999999999988766 67888887
No 237
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.65 E-value=2.3e-05 Score=61.19 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=22.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|+|||||||||+++.+++.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 379999999999999999999875
No 238
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.64 E-value=0.00023 Score=61.10 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=27.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+|||++++.+....... +..+++++
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~-~~~~v~v~ 60 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARS-DRPLVTLN 60 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCS-SSCCCEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCccc-CCCeEEEe
Confidence 468999999999999999999876533 34556665
No 239
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.64 E-value=3.5e-05 Score=60.88 Aligned_cols=35 Identities=34% Similarity=0.407 Sum_probs=29.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|.|+|||||||+++.++..+... +.++.+++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~~ 48 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVLD 48 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEee
Confidence 479999999999999999999998755 45666665
No 240
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.64 E-value=1.5e-05 Score=69.90 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=27.6
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
....++|.||||+|||+++++++..+. ..++.++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~----~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD----VPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT----CCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC----CCEEEec
Confidence 445799999999999999999999873 4556555
No 241
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.62 E-value=4.5e-05 Score=65.50 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=31.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..+++++|++|+||||++..++..+.+. +.+|.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 3488999999999999999999999766 67888887
No 242
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.62 E-value=3.9e-05 Score=60.20 Aligned_cols=35 Identities=23% Similarity=0.077 Sum_probs=28.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.|+|++||||||+++.+++.+.+. |..++.++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~-g~~~i~~d 40 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLD 40 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhC-CCcEEEEC
Confidence 378999999999999999999988653 55666665
No 243
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.61 E-value=4.3e-05 Score=71.78 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=24.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.++|+||||+||||+++++++.+.+.
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 69999999999999999999998765
No 244
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.61 E-value=2.9e-05 Score=61.35 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.++.|+|++|||||||++.|++.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 468999999999999999999999876
No 245
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.60 E-value=3e-05 Score=59.94 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 246
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.59 E-value=4.7e-05 Score=59.90 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=28.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+|||||||+.+.|+..+... |..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEEE
Confidence 68999999999999999999987643 45566665
No 247
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.58 E-value=4.1e-05 Score=59.75 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|+|||||||+.+.|+..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3789999999999999999999875
No 248
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.57 E-value=5.4e-05 Score=65.75 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=27.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~ 62 (241)
+++|+||+||||||+++.|++.+... .+..+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 79999999999999999999988632 123455554
No 249
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.56 E-value=3.6e-05 Score=67.71 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=26.0
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccC
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEF 54 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~ 54 (241)
...++|+||||||||||++.|++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 34799999999999999999999998764
No 250
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.56 E-value=3.3e-05 Score=66.57 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=49.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcccCCCCC-------Cccc------cccc-h---hhcCCCCCc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNEIGGDGD-------IPHS------AIGT-A---RRMQVPEPS 90 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e~~~~~~-------~~~~------~~~~-~---~~~~~~~~~ 90 (241)
+++|+||||||||||++.|++.+ . |.-+.++.+...+..... .+.. .+.. . .....+|++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~--~-G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~L~~gldg~~LSgG 204 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL--G-GSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSID 204 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH--T-CEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHTTTGGGGTCCEECC
T ss_pred EEEEECCCCCcHHHHHHHHhhhc--C-ceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHHhHccCCccCcCHH
Confidence 89999999999999999999998 2 332223332211111000 0000 0000 0 011235667
Q ss_pred ccHHHHHHHHHhcCCcEEEEcCCCCHHhHHH
Q 026207 91 LQHKVMIEAVENHMPEVIIVDEIGTEAEAHA 121 (241)
Q Consensus 91 ~~~~~~~~~~l~~~p~vlilDE~~~~~d~~~ 121 (241)
++|+ ++++..+|++|| ++.+|+..
T Consensus 205 qkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 205 RKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp CSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred HHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 8888 888889999999 77777643
No 251
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.54 E-value=3.3e-05 Score=66.80 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=22.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++++|+|++|||||||++.+++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3589999999999999999999976
No 252
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.54 E-value=4.4e-05 Score=61.70 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=29.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|++||||||+++.|++.+.+..|.++++++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 79999999999999999999998744455667776
No 253
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.53 E-value=3.4e-05 Score=67.04 Aligned_cols=25 Identities=44% Similarity=0.489 Sum_probs=23.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..++|+||||+|||||++.+++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 5799999999999999999999874
No 254
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.53 E-value=0.00018 Score=58.09 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=19.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++++|+||+|||+++...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999987765443
No 255
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.52 E-value=5.3e-05 Score=61.22 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=23.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+++|+||+|||||||++.|++..+
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999875
No 256
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.50 E-value=0.00011 Score=71.65 Aligned_cols=77 Identities=23% Similarity=0.273 Sum_probs=43.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAVE 101 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (241)
.++|+||||+||||+++.++..+... .+.++++++ ...+... ....+ ......+..+..+.
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~-~~~l~~g----~~~~g--------~~~~~l~~~~~~~~ 259 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ-MGSLLAG----AKYRG--------EFEERLKAVIQEVV 259 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC-C-----------------------CHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee-hHHhhcc----Cccch--------HHHHHHHHHHHHHH
Confidence 58999999999999999999987442 146777776 3222100 00000 00122334444444
Q ss_pred hc-CCcEEEEcCCCCHH
Q 026207 102 NH-MPEVIIVDEIGTEA 117 (241)
Q Consensus 102 ~~-~p~vlilDE~~~~~ 117 (241)
.. .|.++||||+....
T Consensus 260 ~~~~~~iL~IDEi~~l~ 276 (854)
T 1qvr_A 260 QSQGEVILFIDELHTVV 276 (854)
T ss_dssp TTCSSEEEEECCC----
T ss_pred hcCCCeEEEEecHHHHh
Confidence 43 67899999997653
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.50 E-value=7.3e-05 Score=59.15 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=28.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..+++|+|++|||||||++.+++.+.+. +.++..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~-g~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc-CCceeEEe
Confidence 3579999999999999999999987654 45555443
No 258
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.49 E-value=8.7e-05 Score=58.72 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=27.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|++||||||+.+.|+..+... |..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC-CC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEee
Confidence 58999999999999999999987543 56666554
No 259
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.49 E-value=5e-05 Score=61.66 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=22.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
..+.|+|||||||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999876
No 260
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.49 E-value=4.3e-05 Score=61.21 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=22.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|+|+|||||||+++.|++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999876
No 261
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=5.3e-05 Score=60.68 Aligned_cols=25 Identities=32% Similarity=0.232 Sum_probs=22.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|||||||||+.+.|+..+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3899999999999999999998873
No 262
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.47 E-value=6.2e-05 Score=58.59 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
+++|.|+|||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999998
No 263
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.47 E-value=4.5e-05 Score=65.45 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=25.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
.++.|.||||||||||+++|++...+..|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~ 199 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSE 199 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC---
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccc
Confidence 379999999999999999999998877444
No 264
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.47 E-value=5.5e-05 Score=60.66 Aligned_cols=21 Identities=24% Similarity=0.090 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
++.|+|||||||||+++.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 265
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.46 E-value=0.0004 Score=60.33 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=23.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
..++|+||+|+||||+++.++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999988753
No 266
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.46 E-value=8.8e-05 Score=58.47 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=29.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.|+|++||||||++..++..+... |.+|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~-g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc-CCeeeEEE
Confidence 478999999999999999999988655 56777665
No 267
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.45 E-value=6.9e-05 Score=59.93 Aligned_cols=30 Identities=27% Similarity=0.139 Sum_probs=24.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++|+|+|||||||+++.|++ + |..+++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~----g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L----GAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T----TCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C----CCEEEEcc
Confidence 589999999999999999998 5 35555554
No 268
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.45 E-value=6.2e-05 Score=60.50 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|||||||||+++.|+..++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3799999999999999999999874
No 269
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.44 E-value=8.1e-05 Score=65.24 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=28.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++.|+|+||||||||++.+++.+.+. +.++.++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEe
Confidence 4589999999999999999999988766 34554443
No 270
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.44 E-value=8.6e-05 Score=66.84 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=31.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..+++++|++|+||||++..+++.+.+. +.+|..++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEee
Confidence 3478899999999999999999999876 67888776
No 271
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.43 E-value=0.00011 Score=57.87 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=27.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|+|++||||||+.+.++..+... |..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK-GYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 58999999999999999999987433 45566555
No 272
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.43 E-value=8e-05 Score=60.19 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=23.5
Q ss_pred eeccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 24 IIFDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 24 ~~~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
...++.+|+|||||||||++.+|.-.+.
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3456999999999999999999876553
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.42 E-value=7e-05 Score=57.68 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=18.6
Q ss_pred cEEEEEeCCCchHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREI 46 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l 46 (241)
.+++|+|||||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 274
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.00011 Score=62.59 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=25.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcccc-CCCeEEEEc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDE-FQKRVVIVD 62 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~-~g~~v~~i~ 62 (241)
++|+||+|+||||+++.++..+... ....+++++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 9999999999999999999886322 112355555
No 275
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.42 E-value=8.3e-05 Score=69.15 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=29.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
++.|+|+|||||||+++.|++.+.+..|..+.+++
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD 405 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD 405 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC
Confidence 79999999999999999999999876444565666
No 276
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.40 E-value=7.9e-05 Score=58.56 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
+++|.|+|||||||+.+.|+..+..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999997753
No 277
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.40 E-value=0.00013 Score=58.18 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=26.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|+|||||||+.+.|+..+... | .++...
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g-~~~~~~ 38 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK-R-DVYLTE 38 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT-S-CEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc-C-CEEEec
Confidence 78999999999999999999987643 3 455443
No 278
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.39 E-value=0.00058 Score=62.83 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=25.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc--cccCC-CeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL--SDEFQ-KRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l--~~~~g-~~v~~i~ 62 (241)
+-++|.|++||||||+++.++..+ ...++ -+++.+|
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 469999999999999999987633 22222 3556666
No 279
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.39 E-value=0.00058 Score=65.65 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=58.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (241)
..++|+||||+||||+++.++..+... .+..++.++- +. .. ........+..+..+
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------g~-~~--~G~~e~~l~~~~~~~ 263 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------GT-KY--RGEFEDRLKKVMDEI 263 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------cc-cc--cchHHHHHHHHHHHH
Confidence 358999999999999999999987432 0122222221 00 00 001134556677777
Q ss_pred HhcCCcEEEEcCCCCHHhHHH-HHHHH-hCCcEEEEeecCCChhhhhc-CCccccccccccEEEe
Q 026207 101 ENHMPEVIIVDEIGTEAEAHA-CRSIA-ERGVMLIGTAHGEWLENIIK-NPILSDLIGGVDTVTL 162 (241)
Q Consensus 101 l~~~p~vlilDE~~~~~d~~~-~~~~~-~~g~~vi~t~H~~~~~~~~~-~p~l~~l~~~~d~V~~ 162 (241)
...+|.+||+| ...+... +..+. .....+|+++........+. .|.+..- ++.|.+
T Consensus 264 ~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rR---f~~i~v 322 (758)
T 3pxi_A 264 RQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR---FQPIQV 322 (758)
T ss_dssp HTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHS---EEEEEC
T ss_pred HhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhh---CcEEEe
Confidence 77889999999 2223322 22222 33456777665554333222 2444443 555555
No 280
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.39 E-value=8.5e-05 Score=58.36 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|+|+|||||||+.+.|+..+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 281
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.39 E-value=8.1e-05 Score=62.20 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|||||||||+.+.|+..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999998764
No 282
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.38 E-value=9.8e-05 Score=65.07 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHh---------cCCcEEEEcCCCCHHhHHHHH----HHHhCCcEEEEeec
Q 026207 91 LQHKVMIEAVEN---------HMPEVIIVDEIGTEAEAHACR----SIAERGVMLIGTAH 137 (241)
Q Consensus 91 ~~~~~~~~~~l~---------~~p~vlilDE~~~~~d~~~~~----~~~~~g~~vi~t~H 137 (241)
++++..++.++. .+|+++++|||++.+|+.... .....+.++|+++|
T Consensus 270 qqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th 329 (359)
T 2o5v_A 270 EGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTE 329 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESS
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEe
Confidence 377778888887 789999999999999985433 22222467888888
No 283
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.38 E-value=9e-05 Score=59.50 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=22.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|+|||||||+++.|++.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999999763
No 284
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.38 E-value=9.8e-05 Score=63.40 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=24.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQK 56 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~ 56 (241)
++.|+||||+|||||+++|+ ...+..|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~ 194 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQE 194 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccc
Confidence 79999999999999999999 88766444
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.38 E-value=8.9e-05 Score=58.46 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.|+|||||||+.+.|+..+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999999876
No 286
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.36 E-value=0.00011 Score=72.14 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=47.5
Q ss_pred cCCCCCcccHHHHHHHHHhcC--CcEEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 84 MQVPEPSLQHKVMIEAVENHM--PEVIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~--p~vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
...+|++++|+..++.++..+ |+++|||||++++|+... ...++.|.+||++.|...
T Consensus 519 ~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~ 584 (993)
T 2ygr_A 519 AATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED 584 (993)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH
Confidence 345677899999999999998 589999999999998433 245667999999999975
No 287
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.36 E-value=8.9e-05 Score=57.90 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|+|||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998763
No 288
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.36 E-value=0.00011 Score=66.57 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=26.8
Q ss_pred eecc-EEEEEeCCCchHHHHHHHHHHhccccC
Q 026207 24 IIFD-FFLSYFRPGVGKTTVMREIARVLSDEF 54 (241)
Q Consensus 24 ~~~g-~vll~Gp~GsGKTTLl~~l~~~l~~~~ 54 (241)
+..| .++|+||||||||||+++|++...++.
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 3344 899999999999999999999998773
No 289
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.35 E-value=0.00022 Score=68.85 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=50.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccC--CCeEEEEcCCcccCCC---------CCCccccccch----------hhcC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEF--QKRVVIVDTSNEIGGD---------GDIPHSAIGTA----------RRMQ 85 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~--g~~v~~i~~~~e~~~~---------~~~~~~~~~~~----------~~~~ 85 (241)
..+++.|||||||||++.+++....... +.+++++....++... +.......+.. .++.
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~ 189 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence 3799999999999998888866433221 4567766533222100 00000111110 0111
Q ss_pred CCCCcccHHHHHHHHHhcCCcEEEEcCCCC-HHhH
Q 026207 86 VPEPSLQHKVMIEAVENHMPEVIIVDEIGT-EAEA 119 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~p~vlilDE~~~-~~d~ 119 (241)
+...+..++.++......++++||+||+.. .++.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~ 224 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLAT 224 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccch
Confidence 112233445555555667899999999984 5554
No 290
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.35 E-value=0.0001 Score=58.35 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
.++|+|+||||||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999997653
No 291
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.35 E-value=0.00011 Score=66.05 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=24.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.++++|+|||||||||++.+++..+.+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 3599999999999999999999988654
No 292
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.35 E-value=8.3e-05 Score=62.04 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++.|.||+||||||+++.|+..+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999654
No 293
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.35 E-value=9.9e-05 Score=64.98 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=25.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc-ccCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS-DEFQ 55 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~-~~~g 55 (241)
.+++|+||||+|||||++.|++... +..|
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccC
Confidence 3799999999999999999999887 6533
No 294
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.35 E-value=0.00025 Score=68.14 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=44.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc------CCCeEEEEcCCcccCCCCCCccccccchhhcCCCCCcccHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE------FQKRVVIVDTSNEIGGDGDIPHSAIGTARRMQVPEPSLQHKVMIEAV 100 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~------~g~~v~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (241)
..++|+||||+||||+++.++..+... .+.+++.++ ...+... .... .......+..+..+
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~-~~~l~~~----~~~~--------g~~e~~l~~~~~~~ 274 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD-IGSLLAG----TKYR--------GDFEKRFKALLKQL 274 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC-CC---CC----CCCS--------SCHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc-HHHHhcc----cccc--------chHHHHHHHHHHHH
Confidence 358999999999999999999987432 123344333 2111100 0000 00012334455555
Q ss_pred HhcCCcEEEEcCCCCH
Q 026207 101 ENHMPEVIIVDEIGTE 116 (241)
Q Consensus 101 l~~~p~vlilDE~~~~ 116 (241)
...++.++||||+...
T Consensus 275 ~~~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 275 EQDTNSILFIDEIHTI 290 (758)
T ss_dssp SSSSCEEEEETTTTTT
T ss_pred HhcCCeEEEEechHHH
Confidence 5566899999999754
No 295
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.34 E-value=0.0001 Score=58.51 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999999774
No 296
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.33 E-value=0.00019 Score=59.02 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=27.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|||||||||+++.|+..+.. +..++...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~~ 60 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK--DYDVIMTR 60 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc--CCCceeec
Confidence 7999999999999999999999875 45555443
No 297
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.33 E-value=5.8e-05 Score=60.63 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=27.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|.|++||||||+++.|+..+... +..+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~-g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA-GRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 68999999999999999999988644 34555554
No 298
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.33 E-value=0.00012 Score=71.83 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=46.5
Q ss_pred CCCCCcccHHHHHHHHHhcCC--cEEEEcCCCCHHhHHH-------HHHHHhCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~p--~vlilDE~~~~~d~~~-------~~~~~~~g~~vi~t~H~~~ 140 (241)
..+|++++|+..++.++..+| +++|||||++++|+.. +...++.|.+||++.|...
T Consensus 503 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~ 567 (972)
T 2r6f_A 503 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 567 (972)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 446778899999999999884 9999999999999832 2345667999999999975
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.32 E-value=0.00011 Score=57.74 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..++|+||+||||||+.+.|+..+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
No 300
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.32 E-value=0.00011 Score=71.95 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=46.7
Q ss_pred cCCCCCcccHHHHHHHHHhcCCc--EEEEcCCCCHHhHHHH-------HHHHhCCcEEEEeecCCC
Q 026207 84 MQVPEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHAC-------RSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~p~--vlilDE~~~~~d~~~~-------~~~~~~g~~vi~t~H~~~ 140 (241)
...+|+|++|++.+++++..+|+ ++|+|||++++|+... ....+.|.++|+++|..+
T Consensus 462 ~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~ 527 (916)
T 3pih_A 462 ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEE 527 (916)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHH
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44577889999999999999877 9999999999988332 234456999999999875
No 301
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.31 E-value=0.00037 Score=62.92 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=31.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++++|++|+||||+...|+..+....|.+|+.++
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 378889999999999999999988754368898887
No 302
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.31 E-value=0.00014 Score=61.80 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 38999999999999999999986
No 303
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.30 E-value=0.00016 Score=60.44 Aligned_cols=34 Identities=29% Similarity=0.555 Sum_probs=27.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|+|+|||||||+.+.|+..+... |..+++++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~-g~~~i~~~ 39 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKN-NIDVIVLG 39 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC-CCEEEEEC
Confidence 79999999999999999999876433 45555555
No 304
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.30 E-value=0.00016 Score=63.72 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=28.2
Q ss_pred EEEEEeEEeeC-cceeeccEEEEEeCCCchHHHHHHHHHH
Q 026207 10 LIVKFFYALYS-INKIIFDFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 10 ~~~r~~~~~~~-~~~~~~g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
+.++.+...-+ .++...|+.+|+||||+||||++-+|.-
T Consensus 8 L~l~nFr~~~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 8 IRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEETTEEEEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEccccccceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34666654321 2334457999999999999999999875
No 305
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.29 E-value=0.00012 Score=58.25 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|+||+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999974
No 306
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.28 E-value=0.00014 Score=66.95 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=44.1
Q ss_pred CCcccHHHHHHHHHhcCC--cEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCCC
Q 026207 88 EPSLQHKVMIEAVENHMP--EVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGEW 140 (241)
Q Consensus 88 ~~~~~~~~~~~~~l~~~p--~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~~ 140 (241)
|+|.+++..++.++..+| +++|+|||++++|+.... .... |.+||+++|...
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~ 459 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ 459 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH
Confidence 889999999999999999 999999999999984332 3334 889999999864
No 307
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.28 E-value=0.00014 Score=57.24 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.|+|||||||+.+.|+..+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998865
No 308
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.26 E-value=0.00015 Score=57.21 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|.|+|||||||+.+.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999876
No 309
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.26 E-value=0.00015 Score=57.35 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=22.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|+|||||||+.+.|+..+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999998763
No 310
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.25 E-value=0.00019 Score=62.57 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=28.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|+|+||+||||+++.+++.+.+. +.++..++
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 479999999999999999999988765 45555554
No 311
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.23 E-value=0.00014 Score=57.03 Aligned_cols=24 Identities=42% Similarity=0.418 Sum_probs=21.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+++|+|+|||||||+++.++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 312
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.23 E-value=0.00012 Score=57.15 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=18.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|+|||||||+.+.|+..+.
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 313
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.23 E-value=5.6e-05 Score=65.20 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=21.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCC
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQ 55 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g 55 (241)
.+++|+||||+|||||++.|++...+..|
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G 202 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTN 202 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------
T ss_pred CEEEEECCCCCCHHHHHHHhccccccccc
Confidence 38999999999999999999998876533
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.23 E-value=0.00015 Score=61.75 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=22.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|||||||||+.+.++..++
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998764
No 315
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.22 E-value=0.00018 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|+|+|||||||+.+.|+..+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999865
No 316
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.21 E-value=0.00013 Score=65.74 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.8
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+||||||||||++.|++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 8999999999999999999974
No 317
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.21 E-value=0.00027 Score=56.65 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=26.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|+|++||||||+.+.|+..+... +..+..+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v~~~~ 44 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAA-GHRAELLR 44 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEee
Confidence 79999999999999999999887543 45554443
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.21 E-value=0.00019 Score=56.65 Aligned_cols=24 Identities=38% Similarity=0.338 Sum_probs=21.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
..++|+|+|||||||+.+.|+..+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l 34 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAEL 34 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999999873
No 319
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.20 E-value=0.00012 Score=62.80 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHh-cccc
Q 026207 29 FLSYFRPGVGKTTVMREIARV-LSDE 53 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~-l~~~ 53 (241)
++|+||||+|||||++.|++. +.+.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~ 46 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPE 46 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCC
Confidence 699999999999999999886 5444
No 320
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00022 Score=58.20 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|.|+|||||||+.+.|+..+.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999998763
No 321
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.20 E-value=0.00019 Score=57.91 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=20.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+|||||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 322
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.20 E-value=0.00014 Score=60.59 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=22.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|+|||||||+.+.|+..+.
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999999875
No 323
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.19 E-value=0.00016 Score=55.97 Aligned_cols=24 Identities=42% Similarity=0.409 Sum_probs=21.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|++||||||+.+.|+..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.19 E-value=0.00019 Score=57.29 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|+|+|||||||+.+.|+..+.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998763
No 325
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.19 E-value=0.00019 Score=69.83 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=45.3
Q ss_pred CCCcccHHHHHHHHHhcCCc--EEEEcCCCCHHhHHH-------HHHHHhCCcEEEEeecCCC
Q 026207 87 PEPSLQHKVMIEAVENHMPE--VIIVDEIGTEAEAHA-------CRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~p~--vlilDE~~~~~d~~~-------~~~~~~~g~~vi~t~H~~~ 140 (241)
+|++++|++.++.++..+|+ ++|+|||++++|+.. +...++.|.+||++.|..+
T Consensus 380 LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~ 442 (842)
T 2vf7_A 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLD 442 (842)
T ss_dssp SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 56678999999999999994 999999999998732 2345667999999999885
No 326
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.19 E-value=0.00021 Score=56.81 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=25.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
+++|+|++||||||+.+.|+..+. |..++.++
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~---g~~~~~~~ 37 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIP---ANTIKYLN 37 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSC---GGGEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHC---CCceEEEe
Confidence 689999999999999999999872 23455554
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.19 E-value=0.00019 Score=57.88 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+|||||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 328
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.19 E-value=0.00011 Score=60.21 Aligned_cols=23 Identities=26% Similarity=0.158 Sum_probs=21.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.++.|.|++||||||+++.|++.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 38999999999999999999987
No 329
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.19 E-value=0.00021 Score=57.18 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
.++|+||+|+|||||++.|....+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3789999999999999999988753
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.17 E-value=0.0002 Score=57.33 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=26.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEE
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIV 61 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i 61 (241)
-+++|+|++||||||+.+.|+..+... +..+..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~~~~ 44 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEVKHL 44 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEE
Confidence 379999999999999999999876533 3444333
No 331
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.17 E-value=0.0002 Score=58.09 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.|||||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999875
No 332
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.16 E-value=0.00023 Score=62.65 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=28.0
Q ss_pred cEEEE--EeCCCchHHHHHHHHHHhcccc-----CCCeEEEEc
Q 026207 27 DFFLS--YFRPGVGKTTVMREIARVLSDE-----FQKRVVIVD 62 (241)
Q Consensus 27 g~vll--~Gp~GsGKTTLl~~l~~~l~~~-----~g~~v~~i~ 62 (241)
+.++| +||+|+|||||++.++..+... .+..+++++
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 47888 9999999999999999877542 134667776
No 333
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.15 E-value=0.00021 Score=58.50 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|+|||||||+|..+.|+..+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999875
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.15 E-value=0.0002 Score=56.20 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|+|||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998763
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.15 E-value=0.00026 Score=56.49 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|+|++||||||+.+.|+..+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999875
No 336
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.14 E-value=0.00023 Score=55.06 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+|++||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998763
No 337
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.14 E-value=0.00035 Score=58.16 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=28.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+||||+|||++++.++...... +..+++++
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~ 64 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLN 64 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEe
Confidence 468999999999999999999987543 35677776
No 338
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.13 E-value=0.0002 Score=58.11 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|.|||||||||+.+.|+..+.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 339
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.13 E-value=0.00024 Score=57.61 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+++|.|+|||||||+.+.|+..+.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998763
No 340
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.12 E-value=0.00033 Score=61.98 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=31.0
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcC
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDT 63 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~ 63 (241)
..+.++|+||+|+||||+++.++...... +.+++++|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 56689999999999999999999877544 566777763
No 341
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.12 E-value=0.00025 Score=54.63 Aligned_cols=24 Identities=25% Similarity=0.063 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998763
No 342
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.11 E-value=0.00021 Score=61.09 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=24.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
.++.|.||+|||||||++.|++.+.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 389999999999999999999998753
No 343
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.11 E-value=0.00024 Score=57.09 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=23.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
..++|+||+|+||||+++.++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 37999999999999999999987753
No 344
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.07 E-value=0.00023 Score=61.68 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcccc
Q 026207 29 FLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
++|+||||+||||+++++++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC
Confidence 8999999999999999999987543
No 345
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.07 E-value=0.00043 Score=54.64 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=41.6
Q ss_pred hcCCCCCcccHHHHHHHHHhc----CCcEEEEcCCCCHHhHHHHH------HHHhCCcEEEEeecCC
Q 026207 83 RMQVPEPSLQHKVMIEAVENH----MPEVIIVDEIGTEAEAHACR------SIAERGVMLIGTAHGE 139 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~----~p~vlilDE~~~~~d~~~~~------~~~~~g~~vi~t~H~~ 139 (241)
.+..+|+|.+++..++.++.. .|+++++|||++++|+.... .....+.++|+++|..
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~ 127 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRD 127 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCH
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecH
Confidence 455678899999999998864 46999999999999995433 1122345677767764
No 346
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.05 E-value=0.0004 Score=60.84 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=29.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+|+||+||||++..++..+... |.+|..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEe
Confidence 479999999999999999999987654 67777665
No 347
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.05 E-value=0.0003 Score=62.38 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=21.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.||||||||||++.+++..
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 89999999999999999999865
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.05 E-value=0.00035 Score=55.39 Aligned_cols=23 Identities=22% Similarity=0.013 Sum_probs=21.1
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++.|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 37999999999999999999986
No 349
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.05 E-value=0.00027 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+|+||+|||||++.+++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 350
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.04 E-value=0.00031 Score=57.32 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=21.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.|+|||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 351
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.02 E-value=0.00036 Score=56.39 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
+++|+|++||||||+++.|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999987
No 352
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.02 E-value=0.00034 Score=55.70 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=22.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
++.|+|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998763
No 353
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.02 E-value=0.00023 Score=57.83 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=22.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|.||||+||||++.+++..+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999874
No 354
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.02 E-value=0.00027 Score=59.06 Aligned_cols=26 Identities=35% Similarity=0.183 Sum_probs=23.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
...+.|+|++||||||+++.|++.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34899999999999999999999764
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.01 E-value=0.00035 Score=57.84 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+|||||||||+.+.|+..+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999765
No 356
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.00 E-value=0.00037 Score=56.46 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|.|+|||||||+.+.|+..+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 357
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.99 E-value=0.00034 Score=56.44 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=20.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++|+|+|||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999866
No 358
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.99 E-value=0.00037 Score=57.71 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
++.|.||+||||||+.+.|+..+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999998763
No 359
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.96 E-value=0.00062 Score=55.46 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=28.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
++.|.|++||||||+++.++..+... |..++...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTR 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCCccccc
Confidence 79999999999999999999988654 56666554
No 360
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.93 E-value=0.0005 Score=57.05 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=26.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc----CCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE----FQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~----~g~~v~~i~ 62 (241)
+|+|+|++||||||+.+.|+..+... .+..+..++
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~ 62 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILS 62 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEe
Confidence 79999999999999999999876422 123455665
No 361
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.92 E-value=0.00047 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|.|+|||||||+.+.|+..+.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999998763
No 362
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.91 E-value=0.00043 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-.++|+|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999974
No 363
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.0004 Score=59.87 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=26.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc--CCCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE--FQKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~--~g~~v~~i~ 62 (241)
.++|+||||+||||+++.+++.+... ....+..++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 38999999999999999999987421 123455555
No 364
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.91 E-value=0.00046 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|+||+|||||++.+++..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
No 365
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.87 E-value=0.0008 Score=55.63 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=30.7
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++++.|.+|+||||++..++..+. . |.++..++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEe
Confidence 45899999999999999999999887 4 68888887
No 366
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.86 E-value=0.00038 Score=54.49 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999985
No 367
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.86 E-value=0.00049 Score=58.93 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.1
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
..+.++|+|+||+|||||++.+++.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999999863
No 368
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.83 E-value=0.00062 Score=57.68 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|.|+|||||||+.+.|+...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999999853
No 369
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.83 E-value=0.00097 Score=53.58 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=27.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+|++|+|||||++.++...... .++..++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i~ 64 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAML 64 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEe
Confidence 479999999999999999999876443 4556554
No 370
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=0.00068 Score=54.29 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=21.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++.|+|++||||||+.+.++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999999864
No 371
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.81 E-value=0.00058 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+-++|.||||+|||++++.++..+.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4699999999999999999999874
No 372
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.79 E-value=0.00067 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.160 Sum_probs=21.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++.|+|+|||||||+.+.|++.+
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999865
No 373
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.77 E-value=0.00081 Score=58.31 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=26.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|+||+||||||+.+.|+..+. ..++..|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~----~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP----CELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC----EEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC----CcEEecc
Confidence 3799999999999999999999874 3455555
No 374
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.76 E-value=0.00075 Score=51.22 Aligned_cols=23 Identities=13% Similarity=0.236 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 375
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.76 E-value=0.00078 Score=50.90 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998653
No 376
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.76 E-value=0.0011 Score=52.74 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=26.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
+++|+|++||||||+...++.. +.+++|+.+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~ 32 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-----APQVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-----CSSEEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-----CCCeEEEecC
Confidence 4799999999999999999865 2467898843
No 377
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.75 E-value=0.0008 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 378
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.75 E-value=0.00082 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998754
No 379
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.74 E-value=0.00073 Score=57.98 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=24.5
Q ss_pred ceeeccEEEEEeCCCchHHHHHHHHHHh
Q 026207 22 NKIIFDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 22 ~~~~~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.+-+.|+|+|+|+||+|||||++.+++.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457789999999999999999999975
No 380
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.72 E-value=0.00046 Score=58.85 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=24.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
-+++|+||+||||||+.+.++..+... +.++.+++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~ 40 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIE 40 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEee
Confidence 379999999999999999999876533 34455665
No 381
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.72 E-value=0.001 Score=62.06 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=30.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++++|+||||+||||++..++..+... +.+|+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL-GLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEec
Confidence 4689999999999999999999887654 57777765
No 382
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.00085 Score=52.55 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=21.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.-++++|++|+|||||++.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999864
No 383
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.71 E-value=0.00042 Score=63.75 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=30.0
Q ss_pred eEEEEEeEEeeCcc--eeeccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 9 LLIVKFFYALYSIN--KIIFDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 9 ~~~~r~~~~~~~~~--~~~~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++.++.+.. +... ....|+.+|+|+|||||||++.+|...+
T Consensus 42 ~L~i~nf~~-~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 42 RLEIRNLAT-ITQLELELGGGFCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp EEEEESBTT-BSCEEEECCCSEEEEEESHHHHHHHHTHHHHHHT
T ss_pred eeecccccc-eeeEEEecCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 345666653 3433 3344699999999999999999997764
No 384
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.70 E-value=0.00092 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.0
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+.+.-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
No 385
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.70 E-value=0.00089 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 386
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.70 E-value=0.00092 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998865
No 387
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.69 E-value=0.0008 Score=56.43 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
-++|+|+||||||||++.+++...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998643
No 388
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.69 E-value=0.0014 Score=54.30 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=28.8
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCe-EEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKR-VVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~-v~~i~ 62 (241)
.-++.|.|++||||||+++.++..+... +.. +.+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 3489999999999999999999988654 555 55444
No 389
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.69 E-value=0.00085 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
No 390
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.69 E-value=0.00097 Score=58.21 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||+||||||+.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999999874
No 391
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.68 E-value=0.00093 Score=50.72 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
No 392
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.68 E-value=0.0009 Score=60.48 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+-++|+||||+||||++++++..+.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34699999999999999999999885
No 393
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.67 E-value=0.00054 Score=59.06 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
+-++|+||||+|||++++.++..+.
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 3599999999999999999999875
No 394
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.67 E-value=0.00096 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 395
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.67 E-value=0.00082 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998643
No 396
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.67 E-value=0.00098 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999753
No 397
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.65 E-value=0.00099 Score=59.31 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=20.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
..++|+|+||+|||||+++|++
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3799999999999999999999
No 398
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.64 E-value=0.0018 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=21.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.-++++|++|+|||||++.+++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999875
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.64 E-value=0.001 Score=56.33 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=19.8
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
+|+|+|++||||||+.+.|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999984
No 400
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.64 E-value=0.0011 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 401
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.62 E-value=0.0011 Score=50.25 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998743
No 402
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.62 E-value=0.0017 Score=52.32 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=26.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
..++|+|++|+|||||++.++...... .++.++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~ 72 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIA 72 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEE
Confidence 468999999999999999999876543 3444443
No 403
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.61 E-value=0.0013 Score=62.15 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=27.4
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.+|.||||+|||+++-.+...+-.. +.+|+...
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~~-~~~ILv~a 240 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCCA 240 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 4689999999999999887666655444 46777665
No 404
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.60 E-value=0.00099 Score=54.57 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=22.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
-++|+|++|+|||||++.+++....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 5899999999999999999986543
No 405
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.59 E-value=0.00099 Score=50.75 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.2
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999997543
No 406
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.59 E-value=0.0012 Score=50.13 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=20.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 407
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.59 E-value=0.0012 Score=57.64 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||+|||||||...|+..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3899999999999999999999874
No 408
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.59 E-value=0.0012 Score=50.62 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999886
No 409
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.58 E-value=0.00078 Score=51.19 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHh
Q 026207 29 FLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~ 49 (241)
++++|++|+|||||++.+++.
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 789999999999999998753
No 410
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.57 E-value=0.0012 Score=53.37 Aligned_cols=24 Identities=25% Similarity=0.086 Sum_probs=21.5
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
..++|+||+|+|||||+..++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 369999999999999999998764
No 411
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.57 E-value=0.0014 Score=60.15 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+++|+|+||+||||++..|+..+... |.++..++
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd 136 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLIC 136 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEe
Confidence 379999999999999999999888755 67888776
No 412
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.55 E-value=0.0012 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.057 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
...++++|++|+|||||++.+++.-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999998743
No 413
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.55 E-value=0.0013 Score=51.41 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 414
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.55 E-value=0.002 Score=52.48 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=27.9
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCC-eEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQK-RVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~-~v~~i~ 62 (241)
-+|.|.|++||||||+++.++..+... |. .+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~r 39 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTR 39 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeee
Confidence 379999999999999999999988655 44 454443
No 415
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.54 E-value=0.0013 Score=50.95 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 38999999999999999998754
No 416
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.54 E-value=0.0014 Score=50.30 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 417
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.54 E-value=0.0013 Score=50.06 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 418
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.54 E-value=0.0011 Score=59.42 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
+++|+|+|||||||+.+.++..+
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998765
No 419
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.53 E-value=0.0013 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 420
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.53 E-value=0.0013 Score=52.69 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=21.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.-++++|++|+|||||++.+++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999999865
No 421
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.53 E-value=0.0015 Score=56.28 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||+|||||||...++..+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 4789999999999999999998874
No 422
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.52 E-value=0.0012 Score=51.48 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 69999999999999999998764
No 423
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.52 E-value=0.0015 Score=56.44 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=22.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.+++|+||+|||||||...++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4789999999999999999998774
No 424
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.52 E-value=0.0014 Score=50.39 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
No 425
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.52 E-value=0.0012 Score=54.36 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=25.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccC---CCeEEEEc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEF---QKRVVIVD 62 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~---g~~v~~i~ 62 (241)
++.|.|++||||||+++.|+..+.... |..+.+..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 799999999999999999999886431 45665554
No 426
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.51 E-value=0.0011 Score=51.42 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+++..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999998753
No 427
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.51 E-value=0.0014 Score=50.21 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 428
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.50 E-value=0.002 Score=55.09 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=26.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
++++|+||+|+|||||++.++.... .++++++
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~----~~~~~~~ 62 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN----LPYIYLD 62 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT----CCEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC----CCEEEEE
Confidence 6999999999999999999998764 2356665
No 429
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.50 E-value=0.0013 Score=57.69 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=22.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|||||||||+.+.|++.+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 589999999999999999999875
No 430
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.0012 Score=56.00 Aligned_cols=24 Identities=46% Similarity=0.468 Sum_probs=22.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+||||+||||+++.++..+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 499999999999999999999864
No 431
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.49 E-value=0.0015 Score=50.59 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 432
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.49 E-value=0.0015 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhc
Q 026207 29 FLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 29 vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|++|+|||||++.+.+.-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
No 433
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.49 E-value=0.0015 Score=50.30 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 434
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.48 E-value=0.0022 Score=51.42 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
+|.|-|+-||||||.++.|+..+... |.+++...++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~-g~~v~~treP 37 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVILKREP 37 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECC
Confidence 57889999999999999999998765 6777766534
No 435
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.48 E-value=0.0015 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998743
No 436
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.48 E-value=0.0014 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 437
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.48 E-value=0.0015 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=20.9
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHh
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
...-++++|++|+|||||++.+++.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999974
No 438
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.47 E-value=0.0018 Score=50.48 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=22.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcccc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDE 53 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~ 53 (241)
-++++|++|+|||||++.+.+.....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccc
Confidence 48999999999999999988876544
No 439
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.46 E-value=0.001 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++++|++|+|||||++.+++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 440
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.46 E-value=0.0011 Score=59.80 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=20.7
Q ss_pred eccEEEEEeCCCchHHHHHHHHHH
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
...+.++.|+|||||||++..++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 445899999999999999988764
No 441
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.46 E-value=0.0023 Score=57.32 Aligned_cols=55 Identities=5% Similarity=0.063 Sum_probs=42.8
Q ss_pred CCCCCcccHHHHHHHHHh----cCCcEEEEcCCCCHHhHHHHH-------HHHhCCcEEEEeecCC
Q 026207 85 QVPEPSLQHKVMIEAVEN----HMPEVIIVDEIGTEAEAHACR-------SIAERGVMLIGTAHGE 139 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~----~~p~vlilDE~~~~~d~~~~~-------~~~~~g~~vi~t~H~~ 139 (241)
..+|+|++++..++.++. .+|+++++|||.+.+|+.... .....|.++|+++|..
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~ 397 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN 397 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH
Confidence 346788999999999888 479999999999999995433 2222367899999974
No 442
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.46 E-value=0.0038 Score=54.86 Aligned_cols=56 Identities=18% Similarity=0.003 Sum_probs=40.1
Q ss_pred CCCCCcccHHHH------HHHHHhcC-CcEEEEcCCCCHHhHHHHH---H-HH--hCCcEEEEeecCCC
Q 026207 85 QVPEPSLQHKVM------IEAVENHM-PEVIIVDEIGTEAEAHACR---S-IA--ERGVMLIGTAHGEW 140 (241)
Q Consensus 85 ~~~~~~~~~~~~------~~~~l~~~-p~vlilDE~~~~~d~~~~~---~-~~--~~g~~vi~t~H~~~ 140 (241)
...|+|++++.. ++.++..+ |+++++|||++++|+.... . .. ..+.++++++|...
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~ 347 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE 347 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH
Confidence 346778888764 44566778 9999999999999995443 1 11 23457899999853
No 443
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.44 E-value=0.0017 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 444
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0017 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 445
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.43 E-value=0.0016 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 446
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.42 E-value=0.0017 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++.|+|++||||||+.+.++..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 447
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.40 E-value=0.0019 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 448
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.40 E-value=0.0046 Score=57.22 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.7
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.+++|+||+|+|||||+..++..
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEcCCCCCHHHHHHHHHhc
Confidence 48999999999999999998754
No 449
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.40 E-value=0.0021 Score=59.00 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=23.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD 52 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~ 52 (241)
+-++|.||||+|||++++.++..+..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhh
Confidence 46999999999999999999998753
No 450
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.39 E-value=0.0018 Score=50.05 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
No 451
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.38 E-value=0.0012 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
--++++|++|+|||||++.+++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999865
No 452
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.38 E-value=0.0018 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+.+.-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 453
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.38 E-value=0.0018 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999754
No 454
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.38 E-value=0.0019 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 455
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.37 E-value=0.0019 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 456
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.002 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 48999999999999999998743
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.36 E-value=0.002 Score=49.68 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=20.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
.-++++|++|+|||||++.+.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999853
No 458
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.35 E-value=0.0016 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.++|+|+||+|||||++.+++..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 459
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.35 E-value=0.002 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 460
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.35 E-value=0.0018 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.3
Q ss_pred eccEEEEEeCCCchHHHHHHHHHHh
Q 026207 25 IFDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 25 ~~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
..+.++|+|.||+|||||++.+++.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999975
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.35 E-value=0.0023 Score=52.51 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=22.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
++.|.|++||||||+++.|+..+.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999999884
No 462
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.34 E-value=0.0021 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999999865
No 463
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.34 E-value=0.002 Score=50.42 Aligned_cols=23 Identities=9% Similarity=-0.123 Sum_probs=20.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999998887753
No 464
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.34 E-value=0.0033 Score=50.72 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=28.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCC
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTS 64 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~ 64 (241)
+|.|-|+.||||||+++.|+..+.. +.+++...++
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~--~~~v~~~~eP 38 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVK--DYDVIMTREP 38 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEEESS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHC--CCCEEEeeCC
Confidence 7899999999999999999998864 4666665433
No 465
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.32 E-value=0.0021 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.067 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
No 466
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.32 E-value=0.0028 Score=57.31 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=29.1
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.+.++|.|++|+||||++..++..+......+++.+.
T Consensus 45 ~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 45 KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 3599999999999999999999988655222566554
No 467
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.31 E-value=0.0055 Score=50.38 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=25.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEcCCcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVDTSNE 66 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~~~e 66 (241)
-++++||+|+|||.+...++... +.+++++....+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~ 144 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLA 144 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHH
Confidence 48999999999999988877765 245666653433
No 468
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.31 E-value=0.0022 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=21.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 59999999999999999999854
No 469
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.31 E-value=0.002 Score=57.42 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.2
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..+++|+||+|||||||...|+..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 34789999999999999999998774
No 470
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.30 E-value=0.0022 Score=50.01 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
--++++|++|+|||||++.+.+.-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 471
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.30 E-value=0.0022 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+.+.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 472
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.30 E-value=0.0029 Score=59.54 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=28.3
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhccccCCCeEEEEc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLSDEFQKRVVIVD 62 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~ 62 (241)
.++.+|.||||+||||++..++..+....+.+|+...
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4589999999999999998888766442345666654
No 473
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.30 E-value=0.002 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|+||||||||++.+++.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58899999999999999999863
No 474
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.29 E-value=0.0062 Score=48.11 Aligned_cols=34 Identities=35% Similarity=0.398 Sum_probs=28.2
Q ss_pred EEEE-eCCCchHHHHHHHHHHhccccCCCeEEEEcC
Q 026207 29 FLSY-FRPGVGKTTVMREIARVLSDEFQKRVVIVDT 63 (241)
Q Consensus 29 vll~-Gp~GsGKTTLl~~l~~~l~~~~g~~v~~i~~ 63 (241)
+.++ +..|+||||+...++..+... |.+|+.+|-
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~-g~~vlliD~ 38 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRS-GYNIAVVDT 38 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 4444 678899999999999999875 889999983
No 475
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.28 E-value=0.002 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.130 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 476
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.28 E-value=0.0025 Score=54.44 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=22.2
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
++++|+||+|+|||||++.++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 689999999999999999998865
No 477
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.28 E-value=0.0023 Score=50.09 Aligned_cols=23 Identities=26% Similarity=-0.038 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 478
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.28 E-value=0.0013 Score=52.25 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.8
Q ss_pred cEEEEEeCCCchHHHHHHHHHH
Q 026207 27 DFFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~ 48 (241)
.-++++|++|+|||||++.+++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 479
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.28 E-value=0.0023 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 480
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0023 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998753
No 481
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.27 E-value=0.0023 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=20.0
Q ss_pred EEEEEeCCCchHHHHHHHHHHh
Q 026207 28 FFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
-++|+|++|+|||||++.+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 482
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.26 E-value=0.0023 Score=50.11 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+.+.-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 483
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.26 E-value=0.0018 Score=50.34 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=21.0
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
--++++|++|+|||||++.+.+.-
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998644
No 484
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.26 E-value=0.0012 Score=59.31 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.+.|+|+||||||||++++++..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999999874
No 485
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.25 E-value=0.012 Score=55.73 Aligned_cols=109 Identities=13% Similarity=-0.002 Sum_probs=56.6
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhccc--cCCCeEEEEcCCcccCC--------C-CCCcccc-ccc-hhhcCCC--CCcc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVLSD--EFQKRVVIVDTSNEIGG--------D-GDIPHSA-IGT-ARRMQVP--EPSL 91 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l~~--~~g~~v~~i~~~~e~~~--------~-~~~~~~~-~~~-~~~~~~~--~~~~ 91 (241)
..++|+|++|+|||||++.+++.... ..| .+ .++..... . ....+.. +.. ...+.+. .+..
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G-~V---~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRG-RV---EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCC-CG---GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCccc-ee---cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 36999999999999999999976543 111 11 11111100 0 0000000 000 0011111 1112
Q ss_pred cH-HHHHHHHHhcCCcEEEEcCCCCHHhHH---HHHHHHhCCcEEEEeecCCC
Q 026207 92 QH-KVMIEAVENHMPEVIIVDEIGTEAEAH---ACRSIAERGVMLIGTAHGEW 140 (241)
Q Consensus 92 ~~-~~~~~~~l~~~p~vlilDE~~~~~d~~---~~~~~~~~g~~vi~t~H~~~ 140 (241)
.+ ......+...+..++++| +..+.+.. ....+...+..++...|-.+
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred chHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHHccCCEEEEecCCc
Confidence 22 334555556788899999 65555553 33345556888777777665
No 486
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.24 E-value=0.0015 Score=50.41 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.1
Q ss_pred EEEEEeCCCchHHHHHHHHHH
Q 026207 28 FFLSYFRPGVGKTTVMREIAR 48 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~ 48 (241)
-++++|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998874
No 487
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.24 E-value=0.0026 Score=53.63 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHhcc
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
..-++|.||||+|||+++++++....
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 34699999999999999999999754
No 488
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.24 E-value=0.0024 Score=50.42 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 59999999999999999998754
No 489
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.23 E-value=0.0024 Score=50.61 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++.-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 490
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.23 E-value=0.0019 Score=49.66 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=20.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998753
No 491
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.23 E-value=0.002 Score=57.97 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=21.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|+||+|||||++.+++..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999874
No 492
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.22 E-value=0.0027 Score=50.19 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCchHHHHHHHHHHh
Q 026207 26 FDFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 26 ~g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
..-++|.|++|+||||++..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 336999999999999999998873
No 493
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.22 E-value=0.0024 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.4
Q ss_pred cEEEEEeCCCchHHHHHHHHHHh
Q 026207 27 DFFLSYFRPGVGKTTVMREIARV 49 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~ 49 (241)
--++++|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999853
No 494
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.22 E-value=0.002 Score=56.70 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=20.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVLS 51 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l~ 51 (241)
.++|+|+||+|||||++.+++...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999998654
No 495
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.21 E-value=0.0026 Score=49.90 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999999854
No 496
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0026 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++|+|++|+|||||++.+++..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 497
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.20 E-value=0.0024 Score=52.87 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.3
Q ss_pred cEEEEEeCCCchHHHHHHHHHHhc
Q 026207 27 DFFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 27 g~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
.-++|+|++|+|||||++.+++.-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998753
No 498
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.20 E-value=0.0027 Score=49.73 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.6
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 49999999999999999998754
No 499
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.20 E-value=0.0027 Score=50.75 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-++++|++|+|||||++.+++.-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 500
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.19 E-value=0.0023 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.171 Sum_probs=20.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhc
Q 026207 28 FFLSYFRPGVGKTTVMREIARVL 50 (241)
Q Consensus 28 ~vll~Gp~GsGKTTLl~~l~~~l 50 (241)
-|+|+|.+|+|||||++.+++.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999854
Done!