Query 026208
Match_columns 241
No_of_seqs 116 out of 163
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11935 DUF3453: Domain of un 100.0 6.6E-39 1.4E-43 282.1 8.7 139 91-241 1-139 (239)
2 KOG1895 mRNA cleavage and poly 99.8 5.7E-20 1.2E-24 184.8 14.5 179 28-229 2-180 (957)
3 PF05918 API5: Apoptosis inhib 96.7 0.01 2.2E-07 58.4 9.4 114 39-174 52-165 (556)
4 PRK09687 putative lyase; Provi 96.4 0.19 4.1E-06 45.4 15.4 119 45-168 89-218 (280)
5 PF01602 Adaptin_N: Adaptin N 96.3 0.08 1.7E-06 50.7 12.7 98 10-110 81-179 (526)
6 KOG1058 Vesicle coat complex C 96.0 0.1 2.3E-06 52.9 12.2 182 13-229 25-257 (948)
7 PF01602 Adaptin_N: Adaptin N 95.9 0.17 3.7E-06 48.4 13.0 139 6-169 6-179 (526)
8 COG5096 Vesicle coat complex, 95.9 0.15 3.3E-06 52.0 12.9 106 7-113 88-196 (757)
9 COG5096 Vesicle coat complex, 95.6 0.1 2.3E-06 53.1 10.6 95 17-113 28-157 (757)
10 PF10363 DUF2435: Protein of u 95.1 0.19 4.1E-06 38.1 8.3 77 47-123 4-87 (92)
11 PTZ00429 beta-adaptin; Provisi 95.0 0.65 1.4E-05 47.6 14.4 138 8-169 33-206 (746)
12 PTZ00429 beta-adaptin; Provisi 94.7 0.91 2E-05 46.6 14.5 79 33-111 127-207 (746)
13 PF13646 HEAT_2: HEAT repeats; 94.6 0.082 1.8E-06 38.1 5.1 56 49-110 2-58 (88)
14 PF12530 DUF3730: Protein of u 94.4 3.1 6.8E-05 36.4 16.0 113 8-122 38-161 (234)
15 PF12348 CLASP_N: CLASP N term 94.4 0.41 9E-06 40.9 9.8 186 9-225 8-209 (228)
16 PF12755 Vac14_Fab1_bd: Vacuol 93.9 0.39 8.4E-06 36.7 7.7 62 42-103 23-88 (97)
17 PF12717 Cnd1: non-SMC mitotic 93.7 0.58 1.3E-05 39.1 9.2 86 24-110 4-90 (178)
18 PF13646 HEAT_2: HEAT repeats; 93.7 0.62 1.3E-05 33.3 8.2 83 12-107 4-87 (88)
19 PF12830 Nipped-B_C: Sister ch 93.2 0.31 6.7E-06 41.3 6.7 70 42-111 4-73 (187)
20 PF12717 Cnd1: non-SMC mitotic 93.0 4 8.6E-05 34.0 13.1 131 7-148 24-157 (178)
21 cd00020 ARM Armadillo/beta-cat 92.4 1.6 3.6E-05 32.3 9.2 91 20-110 19-118 (120)
22 cd00020 ARM Armadillo/beta-cat 92.2 0.45 9.7E-06 35.4 5.7 65 47-111 8-77 (120)
23 PF02985 HEAT: HEAT repeat; I 92.1 0.31 6.6E-06 29.0 3.8 29 84-112 1-29 (31)
24 PF13513 HEAT_EZ: HEAT-like re 92.1 0.46 1E-05 31.6 5.1 50 61-110 2-55 (55)
25 KOG1060 Vesicle coat complex A 91.3 3.1 6.7E-05 42.8 11.9 104 40-144 137-240 (968)
26 PRK09687 putative lyase; Provi 91.0 1.5 3.3E-05 39.5 8.8 98 6-110 88-186 (280)
27 PF10508 Proteasom_PSMB: Prote 90.8 9.1 0.0002 37.3 14.6 146 6-171 75-231 (503)
28 KOG2956 CLIP-associating prote 90.6 9.9 0.00022 37.1 14.1 111 5-115 284-403 (516)
29 PF12348 CLASP_N: CLASP N term 90.2 10 0.00023 32.1 13.0 86 27-114 113-208 (228)
30 KOG2011 Sister chromatid cohes 88.9 4.2 9.1E-05 43.1 11.0 131 25-176 262-401 (1048)
31 PF02985 HEAT: HEAT repeat; I 87.0 1.1 2.3E-05 26.6 3.3 29 47-75 1-29 (31)
32 PF05918 API5: Apoptosis inhib 86.3 6.5 0.00014 39.1 10.2 132 26-167 2-140 (556)
33 PF10274 ParcG: Parkin co-regu 85.6 4.5 9.7E-05 34.6 7.6 70 41-110 37-107 (183)
34 KOG1060 Vesicle coat complex A 84.9 5.3 0.00011 41.2 8.9 102 6-113 37-173 (968)
35 PF10521 DUF2454: Protein of u 84.4 13 0.00027 33.5 10.5 97 43-151 116-230 (282)
36 KOG1525 Sister chromatid cohes 84.0 1.7 3.7E-05 46.9 5.3 126 21-159 313-441 (1266)
37 PF12755 Vac14_Fab1_bd: Vacuol 83.5 17 0.00037 27.6 9.3 73 77-168 21-93 (97)
38 KOG1020 Sister chromatid cohes 83.5 10 0.00023 41.6 10.7 82 28-109 867-957 (1692)
39 KOG1061 Vesicle coat complex A 82.6 10 0.00022 38.7 9.9 133 32-173 107-270 (734)
40 PRK13800 putative oxidoreducta 82.1 18 0.0004 37.8 12.0 49 56-110 817-865 (897)
41 KOG1248 Uncharacterized conser 80.9 66 0.0014 34.8 15.2 147 10-174 699-859 (1176)
42 PF10508 Proteasom_PSMB: Prote 80.2 61 0.0013 31.6 15.6 112 10-123 121-244 (503)
43 KOG1059 Vesicle coat complex A 79.2 6.8 0.00015 40.1 7.2 67 40-106 138-204 (877)
44 PF12765 Cohesin_HEAT: HEAT re 79.1 2.1 4.6E-05 27.5 2.5 35 36-70 6-42 (42)
45 PF00514 Arm: Armadillo/beta-c 77.6 4.1 8.9E-05 25.4 3.6 28 83-110 12-39 (41)
46 PRK13800 putative oxidoreducta 76.4 29 0.00063 36.4 11.3 84 15-110 628-711 (897)
47 KOG2023 Nuclear transport rece 76.2 20 0.00044 36.6 9.5 72 42-113 170-245 (885)
48 KOG1058 Vesicle coat complex C 74.2 79 0.0017 32.9 13.1 149 10-166 173-341 (948)
49 KOG2229 Protein required for a 73.7 75 0.0016 31.6 12.4 106 6-112 18-129 (616)
50 KOG1062 Vesicle coat complex A 72.3 7.3 0.00016 40.2 5.4 74 77-172 136-209 (866)
51 COG5218 YCG1 Chromosome conden 70.3 1.3E+02 0.0029 30.7 13.6 145 4-168 8-158 (885)
52 KOG2149 Uncharacterized conser 69.1 89 0.0019 29.9 11.6 125 10-149 61-194 (393)
53 KOG1525 Sister chromatid cohes 68.4 44 0.00095 36.6 10.5 111 45-173 221-331 (1266)
54 PF12830 Nipped-B_C: Sister ch 68.3 44 0.00096 28.0 8.8 64 16-82 16-81 (187)
55 KOG1895 mRNA cleavage and poly 66.3 3.8 8.1E-05 43.1 2.1 95 128-225 18-112 (957)
56 KOG0915 Uncharacterized conser 63.8 1.1E+02 0.0024 34.3 12.2 123 43-172 1127-1266(1702)
57 PF04118 Dopey_N: Dopey, N-ter 63.3 71 0.0015 29.4 9.7 101 45-170 96-200 (307)
58 PF09324 DUF1981: Domain of un 63.0 34 0.00073 25.2 6.2 64 45-108 16-84 (86)
59 PF08167 RIX1: rRNA processing 61.8 70 0.0015 26.3 8.6 121 41-174 20-146 (165)
60 PF04826 Arm_2: Armadillo-like 58.9 1.3E+02 0.0027 26.9 10.2 136 20-159 107-250 (254)
61 PF13001 Ecm29: Proteasome sta 57.0 92 0.002 30.4 9.8 94 59-169 387-486 (501)
62 smart00185 ARM Armadillo/beta- 56.9 15 0.00033 21.9 3.0 27 84-110 13-39 (41)
63 KOG2032 Uncharacterized conser 56.6 1.7E+02 0.0038 28.9 11.3 115 42-176 254-376 (533)
64 KOG1020 Sister chromatid cohes 55.2 1.6E+02 0.0034 33.2 11.6 93 19-112 827-921 (1692)
65 KOG2549 Transcription initiati 54.6 2E+02 0.0043 28.8 11.4 144 20-174 259-425 (576)
66 PF07571 DUF1546: Protein of u 52.6 95 0.0021 23.1 7.6 60 57-116 17-82 (92)
67 KOG2023 Nuclear transport rece 51.6 72 0.0016 32.9 8.0 78 25-102 191-275 (885)
68 PF04510 DUF577: Family of unk 51.3 1.1E+02 0.0023 26.1 7.9 70 43-112 81-164 (174)
69 PF12335 SBF2: Myotubularin pr 50.6 1.3E+02 0.0029 26.4 8.8 92 20-113 18-118 (225)
70 PF12719 Cnd3: Nuclear condens 49.8 97 0.0021 27.8 8.2 64 44-107 24-88 (298)
71 cd09246 BRO1_Alix_like_1 Prote 49.8 1.8E+02 0.0038 27.1 10.1 102 57-169 164-276 (353)
72 PF11698 V-ATPase_H_C: V-ATPas 49.7 1E+02 0.0022 24.5 7.2 31 140-171 85-115 (119)
73 cd09241 BRO1_ScRim20-like Prot 46.9 1.4E+02 0.003 27.8 8.9 99 58-169 158-266 (355)
74 KOG2259 Uncharacterized conser 46.3 74 0.0016 32.7 7.2 148 57-230 384-538 (823)
75 KOG0168 Putative ubiquitin fus 45.9 40 0.00086 35.4 5.4 84 24-107 528-624 (1051)
76 KOG2171 Karyopherin (importin) 44.8 4.4E+02 0.0096 28.6 13.6 22 152-174 170-191 (1075)
77 KOG1824 TATA-binding protein-i 44.3 1.9E+02 0.0041 31.2 9.8 117 43-176 648-770 (1233)
78 KOG0212 Uncharacterized conser 44.0 1.3E+02 0.0028 30.4 8.3 70 32-101 152-226 (675)
79 KOG1059 Vesicle coat complex A 43.0 92 0.002 32.3 7.3 128 20-170 193-364 (877)
80 PF11935 DUF3453: Domain of un 42.7 2.3E+02 0.005 24.7 9.3 44 72-115 142-189 (239)
81 KOG0212 Uncharacterized conser 42.4 2.6E+02 0.0057 28.3 10.1 104 11-115 339-456 (675)
82 PF13720 Acetyltransf_11: Udp 41.6 1.3E+02 0.0028 22.0 6.3 48 22-72 29-76 (83)
83 TIGR02270 conserved hypothetic 41.5 1.9E+02 0.0041 27.6 9.1 16 92-107 156-171 (410)
84 KOG1062 Vesicle coat complex A 41.3 57 0.0012 33.9 5.6 72 40-111 136-207 (866)
85 PF05055 DUF677: Protein of un 40.9 3.1E+02 0.0066 25.6 13.1 105 7-120 13-131 (336)
86 PF11099 M11L: Apoptosis regul 40.8 28 0.0006 29.4 2.9 58 108-173 39-96 (167)
87 PF07540 NOC3p: Nucleolar comp 40.7 1.3E+02 0.0029 22.8 6.4 52 63-115 5-57 (95)
88 KOG3723 PH domain protein Melt 40.5 2.8E+02 0.0061 28.2 10.0 101 20-120 170-281 (851)
89 cd09244 BRO1_Rhophilin Protein 39.8 2.2E+02 0.0047 26.7 9.0 84 54-148 152-243 (350)
90 PF14664 RICTOR_N: Rapamycin-i 39.6 2.4E+02 0.0051 26.6 9.3 60 21-80 81-142 (371)
91 KOG1242 Protein containing ada 38.9 96 0.0021 31.1 6.7 66 43-109 255-321 (569)
92 PF09424 YqeY: Yqey-like prote 38.6 1.1E+02 0.0023 25.0 6.0 48 42-94 81-128 (143)
93 PF01603 B56: Protein phosphat 37.9 2.8E+02 0.006 26.3 9.6 81 27-109 236-323 (409)
94 PF09280 XPC-binding: XPC-bind 37.2 63 0.0014 22.4 3.8 34 28-66 9-42 (59)
95 KOG0211 Protein phosphatase 2A 35.9 1.7E+02 0.0037 30.4 8.2 87 24-110 573-662 (759)
96 KOG2160 Armadillo/beta-catenin 35.6 3.4E+02 0.0074 25.5 9.4 95 19-113 94-197 (342)
97 COG5537 IRR1 Cohesin [Cell div 35.0 5.2E+02 0.011 26.5 11.1 122 36-174 260-389 (740)
98 KOG2025 Chromosome condensatio 34.9 5.6E+02 0.012 26.9 11.6 144 4-169 2-153 (892)
99 KOG0413 Uncharacterized conser 34.7 57 0.0012 35.0 4.5 81 32-113 955-1036(1529)
100 PLN03200 cellulose synthase-in 33.6 3.5E+02 0.0076 31.6 10.6 108 4-115 10-128 (2102)
101 KOG0168 Putative ubiquitin fus 33.0 6.4E+02 0.014 27.0 12.2 101 1-101 161-292 (1051)
102 KOG1061 Vesicle coat complex A 32.7 94 0.002 32.1 5.6 55 40-95 344-398 (734)
103 KOG1240 Protein kinase contain 32.6 2.1E+02 0.0045 31.6 8.2 83 23-105 438-529 (1431)
104 KOG3961 Uncharacterized conser 32.3 1.2E+02 0.0027 26.9 5.6 69 42-110 114-182 (262)
105 KOG2259 Uncharacterized conser 32.1 1.8E+02 0.0039 30.0 7.4 105 51-174 203-319 (823)
106 KOG1242 Protein containing ada 32.0 1.7E+02 0.0037 29.4 7.2 90 24-114 270-403 (569)
107 KOG1848 Uncharacterized conser 31.9 5.4E+02 0.012 29.0 11.2 110 53-174 1004-1135(1610)
108 KOG0166 Karyopherin (importin) 31.8 4.1E+02 0.0089 26.4 9.7 101 10-110 68-179 (514)
109 PF14868 DUF4487: Domain of un 31.8 1.3E+02 0.0028 30.1 6.4 71 40-110 473-550 (559)
110 COG5218 YCG1 Chromosome conden 31.6 3.1E+02 0.0066 28.2 8.8 85 25-109 67-158 (885)
111 KOG4653 Uncharacterized conser 31.3 1E+02 0.0022 32.5 5.6 126 46-181 727-860 (982)
112 PF06075 DUF936: Plant protein 31.2 1.5E+02 0.0032 29.9 6.7 72 47-118 483-571 (579)
113 cd09243 BRO1_Brox_like Protein 31.1 4.5E+02 0.0097 24.6 9.7 99 58-169 168-277 (353)
114 PF02847 MA3: MA3 domain; Int 31.0 2.2E+02 0.0048 21.1 9.2 66 6-77 2-67 (113)
115 PF02561 FliS: Flagellar prote 30.9 2.5E+02 0.0054 21.7 8.3 55 7-72 27-84 (122)
116 KOG3678 SARM protein (with ste 30.1 5.4E+02 0.012 25.8 10.0 167 49-224 224-408 (832)
117 KOG1248 Uncharacterized conser 29.6 5.4E+02 0.012 28.2 10.7 95 8-103 785-889 (1176)
118 smart00544 MA3 Domain in DAP-5 29.2 2.4E+02 0.0053 21.0 9.1 66 6-77 2-67 (113)
119 KOG1967 DNA repair/transcripti 28.7 2.9E+02 0.0064 29.5 8.4 100 8-107 909-1019(1030)
120 PRK05685 fliS flagellar protei 28.4 3E+02 0.0065 21.8 8.7 45 18-73 47-91 (132)
121 KOG1820 Microtubule-associated 27.7 5.7E+02 0.012 26.9 10.4 96 26-123 353-454 (815)
122 PF04793 Herpes_BBRF1: BRRF1-l 27.5 2.2E+02 0.0047 26.0 6.6 95 5-99 5-116 (284)
123 KOG1240 Protein kinase contain 27.4 5.5E+02 0.012 28.5 10.2 115 4-119 652-774 (1431)
124 PF08713 DNA_alkylation: DNA a 27.4 1.6E+02 0.0036 24.4 5.6 59 46-106 120-178 (213)
125 KOG0213 Splicing factor 3b, su 27.3 7.6E+02 0.017 26.3 10.9 72 43-114 796-872 (1172)
126 KOG2171 Karyopherin (importin) 27.1 8.5E+02 0.018 26.6 13.9 106 9-115 349-464 (1075)
127 KOG0211 Protein phosphatase 2A 27.0 3.8E+02 0.0082 28.0 8.9 65 43-107 476-542 (759)
128 cd06561 AlkD_like A new struct 26.6 2.3E+02 0.005 23.1 6.3 64 49-113 108-171 (197)
129 PF04063 DUF383: Domain of unk 26.5 1.2E+02 0.0026 25.9 4.6 53 26-80 85-137 (192)
130 PF08389 Xpo1: Exportin 1-like 26.3 1.9E+02 0.0042 22.0 5.5 79 34-112 14-115 (148)
131 PF04844 Ovate: Transcriptiona 25.9 2.3E+02 0.005 19.7 5.6 54 56-112 2-55 (59)
132 KOG1824 TATA-binding protein-i 25.8 7.4E+02 0.016 27.0 10.6 111 4-115 127-245 (1233)
133 KOG0414 Chromosome condensatio 25.3 5E+02 0.011 28.6 9.5 93 6-110 329-426 (1251)
134 PLN03200 cellulose synthase-in 25.1 7E+02 0.015 29.3 11.1 67 46-112 609-680 (2102)
135 PF05327 RRN3: RNA polymerase 25.0 6.9E+02 0.015 24.8 11.3 89 5-94 30-122 (563)
136 KOG1789 Endocytosis protein RM 24.0 9.8E+02 0.021 26.8 11.1 135 7-148 2006-2167(2235)
137 KOG1967 DNA repair/transcripti 23.9 5.9E+02 0.013 27.4 9.5 88 52-148 16-107 (1030)
138 KOG0994 Extracellular matrix g 23.8 1.1E+03 0.023 26.5 13.2 94 81-174 1561-1668(1758)
139 cd09240 BRO1_Alix Protein-inte 23.8 5.8E+02 0.013 23.5 13.3 101 56-168 171-283 (346)
140 TIGR02277 PaaX_trns_reg phenyl 23.6 1.4E+02 0.0031 26.9 4.7 74 23-102 204-277 (280)
141 KOG2025 Chromosome condensatio 23.5 6E+02 0.013 26.7 9.3 85 27-111 64-154 (892)
142 PF03097 BRO1: BRO1-like domai 23.2 5.9E+02 0.013 23.3 10.9 134 27-174 130-273 (377)
143 PRK13342 recombination factor 23.1 5.7E+02 0.012 24.0 9.0 51 39-89 244-294 (413)
144 PF10151 DUF2359: Uncharacteri 22.9 5.4E+02 0.012 25.2 8.8 89 6-94 104-208 (469)
145 PF15290 Syntaphilin: Golgi-lo 22.7 1.8E+02 0.004 26.6 5.1 45 61-105 93-153 (305)
146 PF02854 MIF4G: MIF4G domain; 21.6 4.2E+02 0.0092 21.1 7.4 78 29-107 1-79 (209)
147 KOG2213 Apoptosis inhibitor 5/ 21.5 1E+02 0.0022 29.8 3.3 51 41-93 56-106 (460)
148 PF12726 SEN1_N: SEN1 N termin 21.5 8.8E+02 0.019 24.8 13.8 47 29-75 102-149 (727)
149 PF14500 MMS19_N: Dos2-interac 21.4 4.7E+02 0.01 23.3 7.6 60 76-147 201-260 (262)
150 COG5240 SEC21 Vesicle coat com 21.3 4.5E+02 0.0098 27.0 7.9 41 8-49 227-267 (898)
151 PF11701 UNC45-central: Myosin 21.1 1.7E+02 0.0036 23.9 4.3 40 81-120 41-80 (157)
152 PF02671 PAH: Paired amphipath 20.9 1.5E+02 0.0033 18.8 3.3 39 7-48 5-43 (47)
153 PF14764 SPG48: AP-5 complex s 20.8 4.5E+02 0.0098 25.7 7.7 35 59-93 281-315 (459)
154 PF12530 DUF3730: Protein of u 20.2 5.7E+02 0.012 22.1 15.1 141 11-170 4-150 (234)
155 TIGR02270 conserved hypothetic 20.1 7.7E+02 0.017 23.6 13.1 141 7-166 53-202 (410)
156 KOG1953 Targeting complex (TRA 20.0 5.2E+02 0.011 28.1 8.3 137 30-178 444-597 (1235)
No 1
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=100.00 E-value=6.6e-39 Score=282.06 Aligned_cols=139 Identities=31% Similarity=0.506 Sum_probs=113.3
Q ss_pred hhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026208 91 FLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (241)
Q Consensus 91 LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (241)
||+|+|+.|+|++|+|++++||.+| +|+.. +++++++|++|+++|++|++ +|+++|+|||++|+||+|+||
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~-----~~i~~---~~~~~~~W~~~~~lK~~Il~-~~~~~~~gvk~~~iKFle~vI 71 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVF-----RWICV---NPSDEQLWESMNELKDRILS-LWDSENPGVKLAAIKFLERVI 71 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHH-----HHHS-----HHHHHHHHHHHHHHHHHHH-GGGSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHH-----HHHcC---CchHHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHH
Confidence 6799999999999999999999999 55533 38999999999999999999 799999999999999999999
Q ss_pred hhccCCCCCcccccccCCCccccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCCceEEEEecC
Q 026208 171 LLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVNW 241 (241)
Q Consensus 171 l~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~L~~~~Le~Ea~~lLd~LL~~l~~~~~~~~~~~i~~in~ 241 (241)
++||++.++++.+.+ +++||||++||+|||+|++++||+||+++||.||++++++. +++++++++|||
T Consensus 72 l~qs~~~~~~~~~~~--~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~-i~~~~~~a~ins 139 (239)
T PF11935_consen 72 LVQSPGSSDSPPRRG--SPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPH-ISSPLLTAIINS 139 (239)
T ss_dssp HHTS---TTS---GG--GTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT---HHHHHHHHHH
T ss_pred HhcCCCCCCCccccc--cccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHH
Confidence 999999887655422 34699999999999999999999999999999999999887 999999999986
No 2
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=99.83 E-value=5.7e-20 Score=184.78 Aligned_cols=179 Identities=35% Similarity=0.490 Sum_probs=169.0
Q ss_pred HHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhh
Q 026208 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (241)
Q Consensus 28 ~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~ 107 (241)
.|+.+++++...++.+.++++|++.++..+....+|+++++++++++.++.+++...+.++..++.|+ |.|.++.|-++
T Consensus 2 sl~~~~~~l~~~~~~~~~e~~~~l~el~~~~~~~i~~~l~~~~~~i~~~~~~~~~~lv~~ls~~l~d~-~~~r~~~i~~~ 80 (957)
T KOG1895|consen 2 SLSYAMHLLIDVSSSISDELLTELLELLELNDGLIRCLLVEILLEIGLKDFELCNKLVETLSPYLEDN-PIVRRQSIIKG 80 (957)
T ss_pred cHHHHHHHHhcccccccHhHHHHHHHHHhCCcchhhhhHHHHHhhhhHHHHHhhhhHHHHhhhhhcCc-hhhHHHHHhhh
Confidence 36778889988899999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCCCCCcccccccC
Q 026208 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEG 187 (241)
Q Consensus 108 t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~ 187 (241)
+..+|..++++.+++.++++ +++.+.+|.+|..+|++|+. ....|+.|||.++.||+|.+|+.+|+
T Consensus 81 ~d~~~s~l~~i~~~~~~~~~-~~~~~s~w~~~~~~k~~i~~-~~~~G~v~vk~~~~~f~~~~i~~~t~------------ 146 (957)
T KOG1895|consen 81 ADVARSNLEPIVLQFLHMEK-NDLAESLWTAFHLFKDRICL-DDHQGTVGVKVLAAKFMEQSILLYTP------------ 146 (957)
T ss_pred hhhhhhccHHHHHHHHhcch-hHHHHHHHHHHHHhHHHHhh-ccccCcchhhhhHHHHHHhhhhhhcc------------
Confidence 99999999999999999999 99999999999999999994 55678999999999999999999995
Q ss_pred CCccccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhhcC
Q 026208 188 SKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACN 229 (241)
Q Consensus 188 ~~~d~sl~~vP~~Hp~L~~~~Le~Ea~~lLd~LL~~l~~~~~ 229 (241)
.+++|||++++..+..|++..+..||++++.+++
T Consensus 147 --------~l~~g~p~l~~~~~~~e~~~~~~~ll~~l~~p~s 180 (957)
T KOG1895|consen 147 --------DLARGHPFLSYHKTSSEAEQNLSALLSQLAHPTS 180 (957)
T ss_pred --------ccccCCcccccccchHHHHHHHHHHHHHhcCchh
Confidence 4699999999999999999999999999986544
No 3
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.66 E-value=0.01 Score=58.40 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=63.6
Q ss_pred CCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHH
Q 026208 39 ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (241)
Q Consensus 39 ~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~ 118 (241)
.-|++-++-++.++++.-|.+..||++.+-=|-.+|+-.+++++++.++|..||..+++..+..+=.++.++|+.==
T Consensus 52 ~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--- 128 (556)
T PF05918_consen 52 HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDP--- 128 (556)
T ss_dssp C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-H---
T ss_pred hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc---
Confidence 46777777777777777777888888888777777887788888888888888877776554444444444444211
Q ss_pred hhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026208 119 TMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (241)
=..++.+=++|.. . .++.+.||--++||+..-+.--.
T Consensus 129 -----------------k~tL~~lf~~i~~-~-~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 129 -----------------KGTLTGLFSQIES-S-KSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp -----------------HHHHHHHHHHHH-----HS-HHHHHHHHHHHHHHGGGS-
T ss_pred -----------------HHHHHHHHHHHHh-c-ccCchHHHHHHHHHHHHHHhhCc
Confidence 1122233334432 1 24667789999999855444333
No 4
>PRK09687 putative lyase; Provisional
Probab=96.41 E-value=0.19 Score=45.36 Aligned_cols=119 Identities=15% Similarity=0.001 Sum_probs=66.0
Q ss_pred HhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh-hHHHHHHHhhhh
Q 026208 45 AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF-FCRVLEEITMQF 122 (241)
Q Consensus 45 ~~~lp~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l-Y~~~l~~~~~~~ 122 (241)
++.+|-+.++ ..|++.+||+..++.+.+.|.......+.+++.+..++.|+++.|-+.++.+.+.+ -+.++..+. +-
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~-~~ 167 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLI-NL 167 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHH-HH
Confidence 3455555544 45677777777777777776655555566666666667777777777777766543 122222111 11
Q ss_pred hccCCccchHHHHH--HHHHHHH-------HHHHHHhccCCCCchHHHHHHHHhH
Q 026208 123 RWHGKVERWLEELW--TWMVRFK-------DAVFAIALEPGLVGTKLLALKFLET 168 (241)
Q Consensus 123 ~~~~~~~~~~~~~W--~~m~~~K-------~~Il~~~~d~~n~Gvr~~aiKF~e~ 168 (241)
+- .+ .+.-..| ..+..++ ..++. +++..+..||..|+..+.+
T Consensus 168 L~-d~--~~~VR~~A~~aLg~~~~~~~~~~~~L~~-~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 168 LK-DP--NGDVRNWAAFALNSNKYDNPDIREAFVA-MLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred hc-CC--CHHHHHHHHHHHhcCCCCCHHHHHHHHH-HhcCCChHHHHHHHHHHHc
Confidence 11 11 1222222 2233221 23444 5577788888888877744
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.25 E-value=0.08 Score=50.66 Aligned_cols=98 Identities=23% Similarity=0.305 Sum_probs=79.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHH-HHHHH
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI-LMPVL 88 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~-~v~~L 88 (241)
+.-+.....+++-..+...|+.+-.+. +|.+++.++|.|.....++++.|||-.+--+..+++.+++.+.. .++.+
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l 157 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKL 157 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 444555555667556666666665543 78899999999998888999999999999998999999999887 79999
Q ss_pred HHhhcCCChHHHHHHHHhhhhh
Q 026208 89 LAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 89 ~~LL~d~d~~V~K~aI~~~t~l 110 (241)
..+|.|.|+.|+..|+.++..+
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHH
Confidence 9999999999999998888777
No 6
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.1 Score=52.86 Aligned_cols=182 Identities=23% Similarity=0.245 Sum_probs=116.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhc-CCchhhHHHHHHHHHHHH----------------h-
Q 026208 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ-SSPESLVRKSLIETIEDI----------------G- 74 (241)
Q Consensus 13 ln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~-~d~~~~vrk~~~~fiee~----------------~- 74 (241)
+.++...+|..+|++.++++--+++++++ +|+++-.|+-|- +.++.+++|.+-=|.|-+ |
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~mlnGe~--~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcn 102 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALMLNGED--LPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCN 102 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCC--chHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHH
Confidence 45666678888999999999999998876 455666676663 467889999887665432 1
Q ss_pred -----------------------hchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccch
Q 026208 75 -----------------------LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERW 131 (241)
Q Consensus 75 -----------------------~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~ 131 (241)
.+.+|++..++|.++.=|+...+.|-|.||.|..+||+. | .|.+..
T Consensus 103 a~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~-----~~L~pD----- 171 (948)
T KOG1058|consen 103 AYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-F-----EHLIPD----- 171 (948)
T ss_pred HHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-h-----hhhcCC-----
Confidence 145788999999999999999999999999999999998 6 444422
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCCCCCcccccccCCCccccccccCCCCCCCChh----
Q 026208 132 LEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPV---- 207 (241)
Q Consensus 132 ~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~L~~~---- 207 (241)
..+.-+ +.+.. +.++. +|=.|. +.+++. |++..... ..-+++.||.-.+.|...
T Consensus 172 apeLi~------~fL~~---e~Dps-CkRNAF------i~L~~~---D~ErAl~Y---l~~~idqi~~~~~~LqlViVE~ 229 (948)
T KOG1058|consen 172 APELIE------SFLLT---EQDPS-CKRNAF------LMLFTT---DPERALNY---LLSNIDQIPSFNDSLQLVIVEL 229 (948)
T ss_pred hHHHHH------HHHHh---ccCch-hHHHHH------HHHHhc---CHHHHHHH---HHhhHhhccCccHHHHHHHHHH
Confidence 122111 11111 23332 333332 333332 33332222 124566677655544322
Q ss_pred ----hH--HHHHHHHHHHHHHHHhhhcC
Q 026208 208 ----SL--TSEANRMLGTLMDLLQSACN 229 (241)
Q Consensus 208 ----~L--e~Ea~~lLd~LL~~l~~~~~ 229 (241)
-+ -+|..+++.-+.++|++...
T Consensus 230 Irkv~~~~p~~~~~~i~~i~~lL~stss 257 (948)
T KOG1058|consen 230 IRKVCLANPAEKARYIRCIYNLLSSTSS 257 (948)
T ss_pred HHHHHhcCHHHhhHHHHHHHHHHhcCCc
Confidence 22 35667888889999996643
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.87 E-value=0.17 Score=48.39 Aligned_cols=139 Identities=16% Similarity=0.100 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----------
Q 026208 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL---------- 75 (241)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~---------- 75 (241)
..++...+++-+ .+..+|.+.++++--+.+.+++ .+.+++.++.+..+.+.++||-+==++.....
T Consensus 6 ~~el~~~~~~~~--~~~~~~~~~l~kli~~~~~G~~--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~ 81 (526)
T PF01602_consen 6 SQELAKILNSFK--IDISKKKEALKKLIYLMMLGYD--ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILII 81 (526)
T ss_dssp HHHHHHHHHCSS--THHHHHHHHHHHHHHHHHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 345555555555 4666888888887777665543 24777888888777788888877665554321
Q ss_pred -------------------------chhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccc
Q 026208 76 -------------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVER 130 (241)
Q Consensus 76 -------------------------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~ 130 (241)
..++++..+++.+..++.|++|.|-|.|+.|...+|+..= +
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p--------------~ 147 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP--------------D 147 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH--------------C
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH--------------H
Confidence 1357888888889999999999999999999999998622 1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHH
Q 026208 131 WLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 131 ~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (241)
..+..| -+.+.+ ++...+.||+.+|+.++..+
T Consensus 148 ~~~~~~------~~~l~~-lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 148 LVEDEL------IPKLKQ-LLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp CHHGGH------HHHHHH-HTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHhh-hccCCcchhHHHHHHHHHHH
Confidence 111112 334445 55667799999999999877
No 8
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.85 E-value=0.15 Score=51.98 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHH-
Q 026208 7 DQALSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL- 84 (241)
Q Consensus 7 ~~v~~lln~A~~~-~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~- 84 (241)
++++-.+|.=..- .|..+.+... ..|.+-.=+++++++++++.|.+.-.|+++.|||-.+--+.++.+.++++.+..
T Consensus 88 ~~~lLavNti~kDl~d~N~~iR~~-AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g 166 (757)
T COG5096 88 ELALLAVNTIQKDLQDPNEEIRGF-ALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELG 166 (757)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHH-HHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhccc
Confidence 4444444444422 2222454443 355555557888999999999999999999999999999999998888876665
Q ss_pred -HHHHHHhhcCCChHHHHHHHHhhhhhhHH
Q 026208 85 -MPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (241)
Q Consensus 85 -v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (241)
...+..|+.|+||.|+..|..+...++|.
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 66778888999999999999999999998
No 9
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.59 E-value=0.1 Score=53.12 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=76.4
Q ss_pred hcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----------------------
Q 026208 17 NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIG---------------------- 74 (241)
Q Consensus 17 ~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~---------------------- 74 (241)
...+...+|++.+++.=--...+++ .+.++|.|+-+-..++.|+||-+=-+++-..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N 105 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPN 105 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCC
Confidence 3344556899999998777766666 7899999998866888999998876665422
Q ss_pred -------------hchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHH
Q 026208 75 -------------LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (241)
Q Consensus 75 -------------~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (241)
-+.++++..+++.++.+++|+.+.|-|.|+.|.+.+|+.
T Consensus 106 ~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 106 EEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 134678999999999999999999999999999999954
No 10
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.11 E-value=0.19 Score=38.09 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=59.0
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhhchh---hhHHHHHHHHHHhhcCCChHHHHHHHHhhh---hhhHH-HHHHHh
Q 026208 47 LFPYLVELQSSPESLVRKSLIETIEDIGLKAM---EHSSILMPVLLAFLRDGDSGVAGKSIVCGT---NFFCR-VLEEIT 119 (241)
Q Consensus 47 ~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~---e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t---~lY~~-~l~~~~ 119 (241)
.+.++++--.|+.+++|-++.-.+.....+.. ...+.++..+...|+|+|+-|+=.||++.+ ..||. ++..++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 34455555568888899999888888766544 568888888999999999999999999874 55776 776666
Q ss_pred hhhh
Q 026208 120 MQFR 123 (241)
Q Consensus 120 ~~~~ 123 (241)
..|.
T Consensus 84 ~~y~ 87 (92)
T PF10363_consen 84 DEYA 87 (92)
T ss_pred HHHh
Confidence 6554
No 11
>PTZ00429 beta-adaptin; Provisional
Probab=95.03 E-value=0.65 Score=47.61 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=91.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh-----------
Q 026208 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----------- 75 (241)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~L~q~relll~~-~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~----------- 75 (241)
.+.++-+.- ...|..+|.+.++++--....+ |- ..+++.|+.+-...+.++||.+-=++...+.
T Consensus 33 e~~ELr~~L-~s~~~~~kk~alKkvIa~mt~G~Dv---S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaIN 108 (746)
T PTZ00429 33 EGAELQNDL-NGTDSYRKKAAVKRIIANMTMGRDV---SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVN 108 (746)
T ss_pred hHHHHHHHH-HCCCHHHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHH
Confidence 334443333 2346668889998887777544 43 5678888877667788999998776654321
Q ss_pred ------------------------chhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccch
Q 026208 76 ------------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERW 131 (241)
Q Consensus 76 ------------------------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~ 131 (241)
+.++++..++..+...+.|.+|.|-|.|+.|...+|+.-=+.+-
T Consensus 109 tl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~------------ 176 (746)
T PTZ00429 109 TFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY------------ 176 (746)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc------------
Confidence 12456777777888888899999999999999999874221110
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHH
Q 026208 132 LEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 132 ~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (241)
+..| .+.+.. +++..+.+|..+|+..+..+
T Consensus 177 -~~~~------~~~L~~-LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 177 -QQDF------KKDLVE-LLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred -ccch------HHHHHH-HhcCCCccHHHHHHHHHHHH
Confidence 1112 223333 45678888888888776655
No 12
>PTZ00429 beta-adaptin; Provisional
Probab=94.72 E-value=0.91 Score=46.58 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=60.3
Q ss_pred HHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH--HHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 33 RGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS--ILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 33 relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~--~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
|-+..=..|++++.+.+.+...-.|+++.|||-.+==+..+...+++++. ..++.|..||.|.||.|+-.|+.++..+
T Consensus 127 RtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 127 RTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 33333346667777777766666799999999988877777777887754 4577888999999999999998877666
Q ss_pred h
Q 026208 111 F 111 (241)
Q Consensus 111 Y 111 (241)
-
T Consensus 207 ~ 207 (746)
T PTZ00429 207 N 207 (746)
T ss_pred H
Confidence 3
No 13
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.62 E-value=0.082 Score=38.06 Aligned_cols=56 Identities=25% Similarity=0.449 Sum_probs=42.0
Q ss_pred HHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 49 PYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 49 p~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
|.+++. ..+++..+|...+..+.+.+ -..+++.|..+++|+|+.|...|+.+.+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG------DPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 445543 36888999999888887442 225677888888999999999988888766
No 14
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.45 E-value=3.1 Score=36.38 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhh--------cC--CchhhHHHHHHHHHHHHhhch
Q 026208 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL--------QS--SPESLVRKSLIETIEDIGLKA 77 (241)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~--------~~--d~~~~vrk~~~~fiee~~~~~ 77 (241)
.+++.|..=...+....+--.++.+-.+.. +++..+ .++..++.+ .. +...+..--.+-=+.++|..+
T Consensus 38 ~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~-~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~ 115 (234)
T PF12530_consen 38 PVLQTLVSLVEQGSLELRYVALRLLTLLWK-ANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR 115 (234)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHHH-hCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC
Confidence 344444444443332223355666666664 555444 344445544 11 122344444456788899999
Q ss_pred hhhHHHHHHHHHHhh-cCCChHHHHHHHHhhhhhhHHHHHHHhhhh
Q 026208 78 MEHSSILMPVLLAFL-RDGDSGVAGKSIVCGTNFFCRVLEEITMQF 122 (241)
Q Consensus 78 ~e~~~~~v~~L~~LL-~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~ 122 (241)
+++-..+++.+...| .+.++.+.--++++.+.+.+.-.-...+.|
T Consensus 116 p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w 161 (234)
T PF12530_consen 116 PDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW 161 (234)
T ss_pred hhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 999999999999999 788888999999999888876554333333
No 15
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.41 E-value=0.41 Score=40.87 Aligned_cols=186 Identities=15% Similarity=0.176 Sum_probs=102.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcC-CCchHHhhhHHH-------HhhcCCchhhHHHHHHHHHHHHhhc---h
Q 026208 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPSLAAELFPYL-------VELQSSPESLVRKSLIETIEDIGLK---A 77 (241)
Q Consensus 9 v~~lln~A~~~~d~~~kl~~L~q~relll~~-~p~ll~~~lp~v-------l~~~~d~~~~vrk~~~~fiee~~~~---~ 77 (241)
+...|..-....|=.++.+.|.++|.++.++ .....+.|++.+ ..--.|..+-|-+....++.+++.. +
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 3445555345578889999999999999866 223344444433 2223455667888888888886642 2
Q ss_pred -hhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHH-HHHHHHHhccCCC
Q 026208 78 -MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF-KDAVFAIALEPGL 155 (241)
Q Consensus 78 -~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~-K~~Il~~~~d~~n 155 (241)
..++..+++.|...+.|....+...|-.|...++..+= ....+ ...+.. ...+.|
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------------------~~~~~~~~~l~~-~~~~Kn 144 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----------------------YSPKILLEILSQ-GLKSKN 144 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------------------H--HHHHHHHHH-HTT-S-
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------------------cHHHHHHHHHHH-HHhCCC
Confidence 34688889999999999888777777776665544111 00112 333444 668999
Q ss_pred CchHHHHHHHHhHHhhhccCCCCCcccccccCCCccccc-cccCCCCCCC--ChhhHHHHHHHHHHHHHHHHh
Q 026208 156 VGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNI-SWLSGGHPFL--DPVSLTSEANRMLGTLMDLLQ 225 (241)
Q Consensus 156 ~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d~sl-~~vP~~Hp~L--~~~~Le~Ea~~lLd~LL~~l~ 225 (241)
..+|..|..++..++..+...... ... ...+ ..+|.-.+.+ .-+...+.|+..|..+-+...
T Consensus 145 ~~vR~~~~~~l~~~l~~~~~~~~~---l~~-----~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 145 PQVREECAEWLAIILEKWGSDSSV---LQK-----SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHHHHHHHTT-----GG---G-------HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHccchHhh---hcc-----cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999888777611110 000 0001 1223333333 246678888888888877766
No 16
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.93 E-value=0.39 Score=36.66 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=51.8
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch----hhhHHHHHHHHHHhhcCCChHHHHHH
Q 026208 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGDSGVAGKS 103 (241)
Q Consensus 42 ~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~----~e~~~~~v~~L~~LL~d~d~~V~K~a 103 (241)
..+++++|.|+..-.|++..||-...+-+..+++.. ..++..+.+.|..+..|.|+.|...|
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 466899999998888999999999999999987643 24688999999999999999876543
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.75 E-value=0.58 Score=39.07 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh-hHHHHHHHHHHhhcCCChHHHHH
Q 026208 24 VKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME-HSSILMPVLLAFLRDGDSGVAGK 102 (241)
Q Consensus 24 ~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e-~~~~~v~~L~~LL~d~d~~V~K~ 102 (241)
.|...+.-.-+|.. ..|++++.++|.+...=.|+++.|||...-.+......+.- .=...+..+..++.|+|+.|...
T Consensus 4 vR~n~i~~l~DL~~-r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~ 82 (178)
T PF12717_consen 4 VRNNAIIALGDLCI-RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSL 82 (178)
T ss_pred HHHHHHHHHHHHHH-hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHH
Confidence 45555666666774 77888888888887666688888888877766664433211 11112223445567888888777
Q ss_pred HHHhhhhh
Q 026208 103 SIVCGTNF 110 (241)
Q Consensus 103 aI~~~t~l 110 (241)
|..++..+
T Consensus 83 A~~~~~e~ 90 (178)
T PF12717_consen 83 ARSFFSEL 90 (178)
T ss_pred HHHHHHHH
Confidence 76665544
No 18
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.70 E-value=0.62 Score=33.34 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=53.4
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHh
Q 026208 12 LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF 91 (241)
Q Consensus 12 lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~L 91 (241)
|++.....+|...|....+.+.++ ++ ++.+|.++++-.|+++.||+..+..++.++ -+.+++.|..+
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~---~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~~~ 70 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL---GD----PEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALIKL 70 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC---TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc---CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 344443567765665555555432 23 466777777767899999999999998764 24466677787
Q ss_pred hcCCC-hHHHHHHHHhh
Q 026208 92 LRDGD-SGVAGKSIVCG 107 (241)
Q Consensus 92 L~d~d-~~V~K~aI~~~ 107 (241)
+.+++ ..|-+.++.+.
T Consensus 71 l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 71 LQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HTC-SSHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHhhc
Confidence 77654 44555566654
No 19
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.19 E-value=0.31 Score=41.27 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=58.2
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 42 ~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
++...|++.|+++..+++..+|....++++-+.+.---+=..|+|+|..|..|+++.+-++|......++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999988765444444567788989999999999999988877773
No 20
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.01 E-value=4 Score=34.01 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-hhhhHHHHH
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHSSILM 85 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~-~~e~~~~~v 85 (241)
|+.+..+-.....++...|-..|.-+..|+.+..-..=+.++..++..-.|++.+||.....|+.|...+ .++.+...+
T Consensus 24 e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~ 103 (178)
T PF12717_consen 24 EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNF 103 (178)
T ss_pred HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4555566666667888899999999999998553333455556666666799999999999999998877 666555554
Q ss_pred HHHHHhhcCC--ChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHH
Q 026208 86 PVLLAFLRDG--DSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFA 148 (241)
Q Consensus 86 ~~L~~LL~d~--d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~ 148 (241)
+-+..-|++. .+..-+....-.-.+|...++++.+ ++..++.+.++=.+++.
T Consensus 104 ~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-----------d~~~~~l~~kl~~~~~~ 157 (178)
T PF12717_consen 104 PELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-----------DKQKESLVEKLCQRFLN 157 (178)
T ss_pred HHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHHHHHH
Confidence 4444444442 2222123344456788888844432 46666666665555555
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.40 E-value=1.6 Score=32.27 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=61.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCC---chHH-hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh---hH--HHHHHHHHH
Q 026208 20 GDLAVKLSSLKQVRGILSSADP---SLAA-ELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLA 90 (241)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p---~ll~-~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e---~~--~~~v~~L~~ 90 (241)
++...+...+..+..+....++ .+.. +++|.++++-.+++..+++..+..+..++...++ .+ ..+++.|..
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~ 98 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVN 98 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHH
Confidence 3345677777777777753211 2333 6777777775677888999888888888754422 11 225677777
Q ss_pred hhcCCChHHHHHHHHhhhhh
Q 026208 91 FLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 91 LL~d~d~~V~K~aI~~~t~l 110 (241)
++.+.+..+.+.+..+++++
T Consensus 99 ~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 99 LLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHh
Confidence 88888888888888877765
No 22
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=92.17 E-value=0.45 Score=35.44 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=50.2
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhhchh----hhHH-HHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 47 LFPYLVELQSSPESLVRKSLIETIEDIGLKAM----EHSS-ILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 47 ~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~----e~~~-~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
.+|.++++-.+.+.++|+..+..+..+|...+ ++.. .+++.+..+++|+++.|.+.++.+.+++-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 55666666556678999999999998886532 2333 77788889999999999999999888874
No 23
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.15 E-value=0.31 Score=29.02 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=21.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhhhhH
Q 026208 84 LMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (241)
Q Consensus 84 ~v~~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (241)
+++.+..+++|+++.|-+.|+.|.+.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 35677788888888888888888887765
No 24
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.06 E-value=0.46 Score=31.56 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhh----chhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 61 LVRKSLIETIEDIGL----KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 61 ~vrk~~~~fiee~~~----~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
.||+..+..|.+++. ....+.+.+++.|..+|+|+++.|-..|.-|.++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 577777777765442 23458999999999999999999988888877764
No 25
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.29 E-value=3.1 Score=42.83 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=76.0
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHh
Q 026208 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEIT 119 (241)
Q Consensus 40 ~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~ 119 (241)
=|.+.|.++-.|=+...|+++.|||-.|.-|-..-.-+++.=..+++.+..||.|.+|.|+-.|+.++..+||.=|+++-
T Consensus 137 vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH 216 (968)
T KOG1060|consen 137 VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH 216 (968)
T ss_pred hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh
Confidence 34455555555556678999999999998887666666666568889999999999999999999999999999998776
Q ss_pred hhhhccCCccchHHHHHHHHHHHHH
Q 026208 120 MQFRWHGKVERWLEELWTWMVRFKD 144 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~W~~m~~~K~ 144 (241)
+.+..-++.=+ +-+-|..+..|+.
T Consensus 217 knyrklC~ll~-dvdeWgQvvlI~m 240 (968)
T KOG1060|consen 217 KNYRKLCRLLP-DVDEWGQVVLINM 240 (968)
T ss_pred HHHHHHHhhcc-chhhhhHHHHHHH
Confidence 65543221111 2455766665553
No 26
>PRK09687 putative lyase; Provisional
Probab=90.99 E-value=1.5 Score=39.50 Aligned_cols=98 Identities=13% Similarity=0.170 Sum_probs=61.5
Q ss_pred HHHHHHHHHHh-hcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHH
Q 026208 6 RDQALSLLAAA-NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (241)
Q Consensus 6 ~~~v~~lln~A-~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~ 84 (241)
.++++.+|-.. ...+|...+-.....+-++- ...+...+.+++.+.....|++..||+.++.-+.+++ + ..+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--~----~~a 160 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRC-KKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--D----EAA 160 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc-ccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--C----HHH
Confidence 46677777766 44477666766666665553 2333334556665555566777788888777775443 1 235
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 85 MPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 85 v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
++.|..+|+|+|+.|-+.|+.+.+.+
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 55666777777777777777777765
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=90.77 E-value=9.1 Score=37.34 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC--chH--HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH
Q 026208 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP--SLA--AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS 81 (241)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p--~ll--~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~ 81 (241)
-.+..+.|.....+++...|...+++++.++-+++. .++ .++++.++..-.+++.+|.+-.+..|..+++...++
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~- 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL- 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-
Confidence 456677888888888877888888888888754432 112 567777776667888889999999998887654333
Q ss_pred HHH-----HHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHH--HHHHHHHHhccCC
Q 026208 82 SIL-----MPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVR--FKDAVFAIALEPG 154 (241)
Q Consensus 82 ~~~-----v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~--~K~~Il~~~~d~~ 154 (241)
..+ +..|..++...+..+.-|+..++..+.. ..++.++.+.. +-+.+++ -++++
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~------------------~S~~~~~~~~~sgll~~ll~-eL~~d 214 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS------------------HSPEAAEAVVNSGLLDLLLK-ELDSD 214 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh------------------cCHHHHHHHHhccHHHHHHH-HhcCc
Confidence 223 5667777766566665554443333321 12444444443 6666666 44566
Q ss_pred CCchHHHHHHHHhHHhh
Q 026208 155 LVGTKLLALKFLETHVL 171 (241)
Q Consensus 155 n~Gvr~~aiKF~e~vIl 171 (241)
..=+|+.|+..+..+..
T Consensus 215 DiLvqlnalell~~La~ 231 (503)
T PF10508_consen 215 DILVQLNALELLSELAE 231 (503)
T ss_pred cHHHHHHHHHHHHHHHc
Confidence 66678888887766655
No 28
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=90.57 E-value=9.9 Score=37.06 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHH----HHhhcCC-chhhHHHHHHHHHHHHhhchhh
Q 026208 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPY----LVELQSS-PESLVRKSLIETIEDIGLKAME 79 (241)
Q Consensus 5 ~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~----vl~~~~d-~~~~vrk~~~~fiee~~~~~~e 79 (241)
..+.|.++|++-..+..+.++=..|.+..+++.++.=++-++++.+ ++|.-.| .+.-.|+-....|+++|...+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 4577889999888776666888889999999987766555555555 4466556 5667888888999999976543
Q ss_pred ----hHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHH
Q 026208 80 ----HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (241)
Q Consensus 80 ----~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l 115 (241)
....++..+..--.|.++.|.+.|-+++..+--..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 222222223333358888999999888765544433
No 29
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.16 E-value=10 Score=32.13 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCchHHhh-hHHHHhhcCCchhhHHHHHHHHHHHHhhchh---------hhHHHHHHHHHHhhcCCC
Q 026208 27 SSLKQVRGILSSADPSLAAEL-FPYLVELQSSPESLVRKSLIETIEDIGLKAM---------EHSSILMPVLLAFLRDGD 96 (241)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~-lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~---------e~~~~~v~~L~~LL~d~d 96 (241)
..-+-...++.+-. +.+.+ ++.+.....++++.+|..+++++..+..+.+ ..+..+++.+..++.|.+
T Consensus 113 ~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~ 190 (228)
T PF12348_consen 113 AANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDAD 190 (228)
T ss_dssp HHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCC
Confidence 33334444443222 33555 4444445678899999999999988765443 235778999999999999
Q ss_pred hHHHHHHHHhhhhhhHHH
Q 026208 97 SGVAGKSIVCGTNFFCRV 114 (241)
Q Consensus 97 ~~V~K~aI~~~t~lY~~~ 114 (241)
+.|-+.|-.++..+|...
T Consensus 191 ~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 191 PEVREAARECLWALYSHF 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 999888888777776653
No 30
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.89 E-value=4.2 Score=43.11 Aligned_cols=131 Identities=19% Similarity=0.160 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcC-C--CchHHhhhHHHHhhc---CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHh---hcCC
Q 026208 25 KLSSLKQVRGILSSA-D--PSLAAELFPYLVELQ---SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF---LRDG 95 (241)
Q Consensus 25 kl~~L~q~relll~~-~--p~ll~~~lp~vl~~~---~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~L---L~d~ 95 (241)
+++.|.+-|....+. + -+++..++.+| |- .|-.+++|--+++.|..-+...|+++..-- -|.++ |.|.
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sV--FVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~ds-YLKYiGWtLsDk 338 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSV--FVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDS-YLKYIGWTLSDK 338 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhe--eeeecccCchHHHHHHHHHHHHHHHhccHHHhcch-HHHHhcceeecC
Confidence 467777777666422 1 13556666665 32 366789999999999988899998744321 34444 7899
Q ss_pred ChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccC
Q 026208 96 DSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTS 175 (241)
Q Consensus 96 d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~ 175 (241)
+..|-++++.+.-.+|-.- .....+=.-..+||++|+....-..+.|||...++-. ++.-++
T Consensus 339 ~~~VRl~~lkaL~~L~e~~---------------~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~---~~~~~~ 400 (1048)
T KOG2011|consen 339 NGTVRLRCLKALIKLYEKD---------------EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLC---LLLSSS 400 (1048)
T ss_pred ccHHHHHHHHHHHHHHhcc---------------ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH---HHHhcc
Confidence 9999999999988888740 2233344456789999999552388999999988765 444444
Q ss_pred C
Q 026208 176 D 176 (241)
Q Consensus 176 ~ 176 (241)
+
T Consensus 401 g 401 (1048)
T KOG2011|consen 401 G 401 (1048)
T ss_pred c
Confidence 4
No 31
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.98 E-value=1.1 Score=26.60 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=23.4
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhh
Q 026208 47 LFPYLVELQSSPESLVRKSLIETIEDIGL 75 (241)
Q Consensus 47 ~lp~vl~~~~d~~~~vrk~~~~fiee~~~ 75 (241)
++|.+++.-.|++.+||...+.-+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46777778789999999999999887754
No 32
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.25 E-value=6.5 Score=39.10 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHH
Q 026208 26 LSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSI 104 (241)
Q Consensus 26 l~~L~q~relll~~-~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI 104 (241)
++.|.+..+.+-+. |.+-=.+-+-.+|+... .+...++..++||-.-++.-|++...+++++..|.+|+|..|-+.||
T Consensus 2 ie~lY~~~~~L~~a~d~~~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~ai 80 (556)
T PF05918_consen 2 IEKLYENYEILADAKDKSQHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAI 80 (556)
T ss_dssp HHHHHHHHHHHHHTGGGGGGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHH
T ss_pred HHHHHHHHhHhhcCCCcccCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45566666666431 21111334455666543 46789999999999888888999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHhh------hhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHh
Q 026208 105 VCGTNFFCRVLEEITM------QFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLE 167 (241)
Q Consensus 105 ~~~t~lY~~~l~~~~~------~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e 167 (241)
-..-.+.+..=+++.+ |-+. ++-=.-+...|....+ ++..++-|+=..-.+.++
T Consensus 81 k~lp~~ck~~~~~v~kvaDvL~QlL~--------tdd~~E~~~v~~sL~~-ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 81 KGLPQLCKDNPEHVSKVADVLVQLLQ--------TDDPVELDAVKNSLMS-LLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp HHGGGG--T--T-HHHHHHHHHHHTT-----------HHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHH
T ss_pred HhHHHHHHhHHHHHhHHHHHHHHHHh--------cccHHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHH
Confidence 9988887653322211 2111 1111224455566666 445566666555555553
No 33
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=85.60 E-value=4.5 Score=34.56 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=53.4
Q ss_pred CchHHhhhHHHHhhcCCchhhHHHHHHHHHHH-HhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 41 PSLAAELFPYLVELQSSPESLVRKSLIETIED-IGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 41 p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee-~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
..+|+-|++++-|..+.-.---++=+.++++. ...+-.-.+++++..|+.-|+..|+.|.+.+..+.-.+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35789999999887655455556666667765 23344567999999999999999999999999888777
No 34
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.93 E-value=5.3 Score=41.23 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHH----HH----H----
Q 026208 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETI----ED----I---- 73 (241)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fi----ee----~---- 73 (241)
++++..+||.= .| .+|++.++..-.++.+..- ..++||.|+---...+++|||.|==++ || +
T Consensus 37 ~~dL~~lLdSn---kd-~~KleAmKRIia~iA~G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSI 110 (968)
T KOG1060|consen 37 HDDLKQLLDSN---KD-SLKLEAMKRIIALIAKGKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSI 110 (968)
T ss_pred hHHHHHHHhcc---cc-HHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeH
Confidence 56677777642 33 4899999999998875432 478899888776788999999874333 32 0
Q ss_pred --h---hc------------------hhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHH
Q 026208 74 --G---LK------------------AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (241)
Q Consensus 74 --~---~~------------------~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (241)
+ .+ -+-..+.++-++....+|..|.|-|.|..+..-+|.+
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 0 01 1335666777777778889999999999999999975
No 35
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.36 E-value=13 Score=33.47 Aligned_cols=97 Identities=6% Similarity=-0.057 Sum_probs=63.4
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----------chhhhHHHHHHHHHHhhc--------CCChHHHHHHH
Q 026208 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGL----------KAMEHSSILMPVLLAFLR--------DGDSGVAGKSI 104 (241)
Q Consensus 43 ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~----------~~~e~~~~~v~~L~~LL~--------d~d~~V~K~aI 104 (241)
..+-++|.+|.+..|.+.++|..+...+..... ++..+....-+.|.-.|. ++.+.++..+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 446788989888888899999999988877653 333444444445554444 66677888877
Q ss_pred HhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhc
Q 026208 105 VCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIAL 151 (241)
Q Consensus 105 ~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~ 151 (241)
-|...+|+..+ . . +.....+.....+.+.|++.+.
T Consensus 196 ~~L~~L~~~~~-----~--~-----~~~~r~~~l~~~l~e~IL~~~~ 230 (282)
T PF10521_consen 196 PALLSLLKTQE-----N--D-----DSNPRSTWLDKILREGILSSME 230 (282)
T ss_pred HHHHHHHHhhc-----c--C-----CcccchHHHHHHHHHHHhhhce
Confidence 77777777655 1 1 2334444444555566887443
No 36
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.95 E-value=1.7 Score=46.95 Aligned_cols=126 Identities=14% Similarity=0.142 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhh---cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCCh
Q 026208 21 DLAVKLSSLKQVRGILSSADPSLAAELFPYLVEL---QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS 97 (241)
Q Consensus 21 d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~---~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~ 97 (241)
+.+.++..+......++ ++|+...+.-- .+.+ -.|....+|+.++=-..++-+...++.+.++..+...++|.-.
T Consensus 313 ~~~vR~~~v~~~~~~l~-~~~~~~~~~~~-~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~ 390 (1266)
T KOG1525|consen 313 SVEVRMECVESIKQCLL-NNPSIAKASTI-LLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKI 390 (1266)
T ss_pred ChhhhhhHHHHhHHHHh-cCchhhhHHHH-HHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhH
Confidence 34467777777777776 46655432222 2222 2455556666554333333344566666677778888899999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchH
Q 026208 98 GVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTK 159 (241)
Q Consensus 98 ~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr 159 (241)
.|-|.||..++.+|..+....+ ......|..+..|++.+|. .++-.+.-.|
T Consensus 391 ~VR~~Am~~LaqlYk~~~~~~~----------~~~k~~t~~~swIp~kLL~-~~y~~~~~~r 441 (1266)
T KOG1525|consen 391 KVRKQAMNGLAQLYKNVYCLRS----------AGGKEITPPFSWIPDKLLH-LYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc----------cCcccccccccccchhHHh-hHhhccccHH
Confidence 9999999999999998772222 3357889999999999999 5565556666
No 37
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=83.51 E-value=17 Score=27.59 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=52.4
Q ss_pred hhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCC
Q 026208 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (241)
Q Consensus 77 ~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~ 156 (241)
-.+++..+++.+...+.|+|+-|--.|..++.++-+.+= .+.+..+.++=+.+.. .....+.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-----------------~~~l~~f~~IF~~L~k-l~~D~d~ 82 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR-----------------GEILPYFNEIFDALCK-LSADPDE 82 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH-HHcCCch
Confidence 467888999999999999999998888887766654322 5556667777777777 4455566
Q ss_pred chHHHHHHHHhH
Q 026208 157 GTKLLALKFLET 168 (241)
Q Consensus 157 Gvr~~aiKF~e~ 168 (241)
.||-+| .++-+
T Consensus 83 ~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 83 NVRSAA-ELLDR 93 (97)
T ss_pred hHHHHH-HHHHH
Confidence 688777 34443
No 38
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.49 E-value=10 Score=41.64 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=56.2
Q ss_pred HHHHHHHHHhc-------CCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh--HHHHHHHHHHhhcCCChH
Q 026208 28 SLKQVRGILSS-------ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH--SSILMPVLLAFLRDGDSG 98 (241)
Q Consensus 28 ~L~q~relll~-------~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~--~~~~v~~L~~LL~d~d~~ 98 (241)
+=.++||-+++ -+|++.++|+..+.+=..|...-|||-++-.++++|-..|.+ .+.+..-+..-.+||--.
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~ 946 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGN 946 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhH
Confidence 34456665543 289999999999999889999999999999999999876654 222222222223466555
Q ss_pred HHHHHHHhhhh
Q 026208 99 VAGKSIVCGTN 109 (241)
Q Consensus 99 V~K~aI~~~t~ 109 (241)
|.|-+-.++..
T Consensus 947 I~kLv~etf~k 957 (1692)
T KOG1020|consen 947 IKKLVRETFLK 957 (1692)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 39
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.63 E-value=10 Score=38.73 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=88.1
Q ss_pred HHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh--hHHHHHHHHHHhhcCCChHHHHHHHHhhhh
Q 026208 32 VRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME--HSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (241)
Q Consensus 32 ~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e--~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~ 109 (241)
.|.+..=..+.+...+...+.....|.++.+||-++--++.....+++ +-.-.++.|..|+.|+||.|+-.|..+...
T Consensus 107 lrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e 186 (734)
T KOG1061|consen 107 LRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSE 186 (734)
T ss_pred hhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence 444444445666677788888888888999999998888777766655 456678899999999999998777766544
Q ss_pred hh-------------HHHHHHHhhhhhccCCccchHHHHHHHHHHHHH-------------HHHHH---hccCCCCchHH
Q 026208 110 FF-------------CRVLEEITMQFRWHGKVERWLEELWTWMVRFKD-------------AVFAI---ALEPGLVGTKL 160 (241)
Q Consensus 110 lY-------------~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~-------------~Il~~---~~d~~n~Gvr~ 160 (241)
|- +.+...+-. -.--.-|....-++. +|+.. .+.+.|.+|=+
T Consensus 187 I~e~~~~~~~~~l~~~~~~~lL~a---------l~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvl 257 (734)
T KOG1061|consen 187 IHESHPSVNLLELNPQLINKLLEA---------LNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVL 257 (734)
T ss_pred HHHhCCCCCcccccHHHHHHHHHH---------HHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEe
Confidence 32 222211110 123455766665552 33332 45689999999
Q ss_pred HHHHHHhHHhhhc
Q 026208 161 LALKFLETHVLLF 173 (241)
Q Consensus 161 ~aiKF~e~vIl~q 173 (241)
.++|++=..+--.
T Consensus 258 savKv~l~~~~~~ 270 (734)
T KOG1061|consen 258 SAVKVILQLVKYL 270 (734)
T ss_pred ehHHHHHHHHHHH
Confidence 9999875444333
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.07 E-value=18 Score=37.80 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=30.2
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 56 ~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
.|++..||+-.+..|.+++. ...++.|..+|+|+++.|-+.|+.+.+.+
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~~------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 817 RASAWQVRQGAARALAGAAA------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCChHHHHHHHHHHHhccc------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 45566667666666654431 23345666666777777777777776663
No 41
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.89 E-value=66 Score=34.79 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC----chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc---------
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADP----SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK--------- 76 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p----~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~--------- 76 (241)
-+.|-+...+.+.+.|...|+-+.-++ ...| .+.+..+|+++=+..+-+..-|+---+.|-++|..
T Consensus 699 ~n~L~ds~qs~~~~~~~~rl~~L~~L~-~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e 777 (1176)
T KOG1248|consen 699 FNSLLDSFQSSSSPAQASRLKCLKRLL-KLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNE 777 (1176)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccccc
Confidence 344444455555556766666666665 3444 68888899988665666777777777777777721
Q ss_pred -hhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCC
Q 026208 77 -AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGL 155 (241)
Q Consensus 77 -~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n 155 (241)
.++-+...+..|..-+-.+.+.++=..|.+.+.+|-.-= .++ + . +.+.++=+.|.. ++.+.+
T Consensus 778 ~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~-----~~l-d-------~---~~l~~li~~V~~-~L~s~s 840 (1176)
T KOG1248|consen 778 PASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK-----NIL-D-------D---ETLEKLISMVCL-YLASNS 840 (1176)
T ss_pred chHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh-----ccc-c-------H---HHHHHHHHHHHH-HHhcCC
Confidence 123455666666555444444443333665555544221 111 1 1 234455566666 778999
Q ss_pred CchHHHHHHHHhHHhhhcc
Q 026208 156 VGTKLLALKFLETHVLLFT 174 (241)
Q Consensus 156 ~Gvr~~aiKF~e~vIl~qT 174 (241)
.-|+-+||+|+-..|..++
T Consensus 841 reI~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 841 REIAKAAIGFIKVLVYKFP 859 (1176)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999999988887765
No 42
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=80.16 E-value=61 Score=31.61 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=72.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhh-----hHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHH
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAEL-----FPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~-----lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~ 84 (241)
+.++-.....+|....-...+-++++.. ++.-++.+ ++.+-.+-...+..+|.-+.+++-++++..++.+..+
T Consensus 121 ~~~i~~~L~~~d~~Va~~A~~~L~~l~~--~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 121 LPLIIQCLRDPDLSVAKAAIKALKKLAS--HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhC--CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3344444455666666667777777773 23222333 5555555444466788889999999998777655444
Q ss_pred H-----HHHHHhhcCCChHHHHHHHHhhhhh--hHHHHHHHhhhhh
Q 026208 85 M-----PVLLAFLRDGDSGVAGKSIVCGTNF--FCRVLEEITMQFR 123 (241)
Q Consensus 85 v-----~~L~~LL~d~d~~V~K~aI~~~t~l--Y~~~l~~~~~~~~ 123 (241)
. +.+...|+++|.-|...++...+.+ ++..++++..+++
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi 244 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGI 244 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCH
Confidence 4 4555556788999999999888776 7777766555443
No 43
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.20 E-value=6.8 Score=40.10 Aligned_cols=67 Identities=28% Similarity=0.305 Sum_probs=57.5
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHh
Q 026208 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVC 106 (241)
Q Consensus 40 ~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~ 106 (241)
-|+|...+-+.|+-+-...-+-+||-.+-.+-.+|.++|+-+..+.+-|..=|+|+||+|+-.|+--
T Consensus 138 TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~V 204 (877)
T KOG1059|consen 138 TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSV 204 (877)
T ss_pred CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHH
Confidence 3777788888887776666778999999999999999999999999999999999999998666643
No 44
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=79.05 E-value=2.1 Score=27.51 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=26.2
Q ss_pred HhcCCCchH--HhhhHHHHhhcCCchhhHHHHHHHHH
Q 026208 36 LSSADPSLA--AELFPYLVELQSSPESLVRKSLIETI 70 (241)
Q Consensus 36 ll~~~p~ll--~~~lp~vl~~~~d~~~~vrk~~~~fi 70 (241)
+.+.||+++ +.+...+..--.|+++.||++..++|
T Consensus 6 iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 6 IVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 346788876 47777666666788899999988764
No 45
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=77.63 E-value=4.1 Score=25.36 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 83 ~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
.+++.|..||+++++.|.+.+.-+..+|
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567888899999999999999988876
No 46
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.35 E-value=29 Score=36.35 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=47.6
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcC
Q 026208 15 AANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (241)
Q Consensus 15 ~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d 94 (241)
++...+|...+......+.++ .+ ++.+|.+...-.|++..||.-.++.+.++....+. .+.|..+|.+
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~---~~----~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~L~~ 695 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTET---TP----PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-----APALRDHLGS 695 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhh---cc----hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHHhcC
Confidence 333345544444444444432 22 44555555555677888888888877766422111 1245556677
Q ss_pred CChHHHHHHHHhhhhh
Q 026208 95 GDSGVAGKSIVCGTNF 110 (241)
Q Consensus 95 ~d~~V~K~aI~~~t~l 110 (241)
+|+.|-..++.++..+
T Consensus 696 ~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 696 PDPVVRAAALDVLRAL 711 (897)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 7887777777776544
No 47
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.24 E-value=20 Score=36.62 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=54.3
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh----hHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHH
Q 026208 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME----HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (241)
Q Consensus 42 ~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e----~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (241)
..++-++|+.++|-..+++-+|.-...=+...--..++ ++-+-+++|..|-+|++|.|-|.+..++.-+...
T Consensus 170 rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 170 RPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred CchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 35677999999997778888888776655543333333 5777788888888999999999998887665543
No 48
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.24 E-value=79 Score=32.92 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=91.3
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHH
Q 026208 10 LSLLAAANNH-GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVL 88 (241)
Q Consensus 10 ~~lln~A~~~-~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L 88 (241)
-+|++.+... .|. ...+.|.=.+++-||...-+++-+.++-.++-+..+.--+++||...|...++.-.+-+..+
T Consensus 173 peLi~~fL~~e~Dp----sCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i 248 (948)
T KOG1058|consen 173 PELIESFLLTEQDP----SCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCI 248 (948)
T ss_pred HHHHHHHHHhccCc----hhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHH
Confidence 4566666654 443 45677777777889976666666665544555678888899999999998887766666677
Q ss_pred HHhhcCCChHHH-------------HHHHHhhhhhhHHHHHHHhhhhhccCC------ccchHHHHHHHHHHHHHHHHHH
Q 026208 89 LAFLRDGDSGVA-------------GKSIVCGTNFFCRVLEEITMQFRWHGK------VERWLEELWTWMVRFKDAVFAI 149 (241)
Q Consensus 89 ~~LL~d~d~~V~-------------K~aI~~~t~lY~~~l~~~~~~~~~~~~------~~~~~~~~W~~m~~~K~~Il~~ 149 (241)
..+|..++++|+ -.+|.++++-|-.++..... .+-+ ........=..|..+--+|++
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd---nnvklIvldrl~~l~~~~~~il~~l~mDvLr- 324 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD---NNVKLIVLDRLSELKALHEKILQGLIMDVLR- 324 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC---cchhhhhHHHHHHHhhhhHHHHHHHHHHHHH-
Confidence 777765555443 23344444445443322211 1111 011112222345666677888
Q ss_pred hccCCCCchHHHHHHHH
Q 026208 150 ALEPGLVGTKLLALKFL 166 (241)
Q Consensus 150 ~~d~~n~Gvr~~aiKF~ 166 (241)
.+++.+..||--|+-|.
T Consensus 325 vLss~dldvr~Ktldi~ 341 (948)
T KOG1058|consen 325 VLSSPDLDVRSKTLDIA 341 (948)
T ss_pred HcCcccccHHHHHHHHH
Confidence 77888888887777664
No 49
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.69 E-value=75 Score=31.61 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----ch-hhh
Q 026208 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----KA-MEH 80 (241)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~----~~-~e~ 80 (241)
+.++.+||..-..+-+. +=.....++=-|+.+++--....+|.-.++++.-.+..+|+++-.-|-...+ ++ .+-
T Consensus 18 P~el~dLL~~~~~~lp~-~Lr~~i~~~LiLLrNk~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~k 96 (616)
T KOG2229|consen 18 PSELKDLLRTNHTVLPP-ELREKIVKALILLRNKNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDK 96 (616)
T ss_pred hHHHHHHHHhccccCCH-HHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccch
Confidence 46778888887766332 3344455666667666543333444444445555566779887655544332 22 233
Q ss_pred HHHHHH-HHHHhhcCCChHHHHHHHHhhhhhhH
Q 026208 81 SSILMP-VLLAFLRDGDSGVAGKSIVCGTNFFC 112 (241)
Q Consensus 81 ~~~~v~-~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (241)
+.+.+. .+..||+++|+.-.|.|...+.-+|+
T Consensus 97 lnkslq~~~fsml~~~d~~~ak~a~~~~~eL~k 129 (616)
T KOG2229|consen 97 LNKSLQAFMFSMLDQSDSTAAKMALDTMIELYK 129 (616)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 444444 45667899999999999999999998
No 50
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.25 E-value=7.3 Score=40.16 Aligned_cols=74 Identities=16% Similarity=0.323 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCC
Q 026208 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (241)
Q Consensus 77 ~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~ 156 (241)
-+|+++.+.+-+..++...+|.|-|+|++|+..+.|.+=+++- .-..+++..+. ..+.
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e-----------------~f~~~~~~lL~-----ek~h 193 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE-----------------HFVIAFRKLLC-----EKHH 193 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----------------HhhHHHHHHHh-----hcCC
Confidence 3689999999999999999999999999998776665443331 11222333333 3668
Q ss_pred chHHHHHHHHhHHhhh
Q 026208 157 GTKLLALKFLETHVLL 172 (241)
Q Consensus 157 Gvr~~aiKF~e~vIl~ 172 (241)
||-+.+++++.+.+-.
T Consensus 194 GVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 194 GVLIAGLHLITELCKI 209 (866)
T ss_pred ceeeeHHHHHHHHHhc
Confidence 9998888888777655
No 51
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.34 E-value=1.3e+02 Score=30.69 Aligned_cols=145 Identities=14% Similarity=0.040 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC-chHHhhhHHHHhhcCCc--hhhHHHHHHHHHHHHhhchhhh
Q 026208 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP-SLAAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKAMEH 80 (241)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p-~ll~~~lp~vl~~~~d~--~~~vrk~~~~fiee~~~~~~e~ 80 (241)
++.+.+...+|.++.. .+-.-.+++.+.++.-...= .-....+..+|..-..+ ...+-+|++-|++.--..+|+-
T Consensus 8 ~~~~s~~~if~k~Q~s--~aGhrk~~a~l~~~~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg 85 (885)
T COG5218 8 SSLESMQLIFNKIQQS--SAGHRKSLAELMEMLTAHEFSEEFLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEG 85 (885)
T ss_pred HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhh
Confidence 5678888999999876 23566777777777732211 11223445555553333 4588899999998777778886
Q ss_pred HHHHHHHHHHhhc---CCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCc
Q 026208 81 SSILMPVLLAFLR---DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (241)
Q Consensus 81 ~~~~v~~L~~LL~---d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~G 157 (241)
..-+-+++..+|+ ..|..|-||+.|-.+-+--.+= +-++.+. +.++..+....+|.+ ..
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~--------------eIDe~l~---N~L~ekl~~R~~DRE-~~ 147 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR--------------EIDEVLA---NGLLEKLSERLFDRE-KA 147 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc--------------hHHHHHH---HHHHHHHHHHHhcch-HH
Confidence 6666677777776 4578999998876543332111 2234433 346666666554443 35
Q ss_pred hHHHHHHHHhH
Q 026208 158 TKLLALKFLET 168 (241)
Q Consensus 158 vr~~aiKF~e~ 168 (241)
||+.|+|.+-+
T Consensus 148 VR~eAv~~L~~ 158 (885)
T COG5218 148 VRREAVKVLCY 158 (885)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 52
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.06 E-value=89 Score=29.87 Aligned_cols=125 Identities=20% Similarity=0.284 Sum_probs=79.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchH----HhhhHHHHhhcCCchhhHHHHHHHHHHHH----hhchh-hh
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLA----AELFPYLVELQSSPESLVRKSLIETIEDI----GLKAM-EH 80 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll----~~~lp~vl~~~~d~~~~vrk~~~~fiee~----~~~~~-e~ 80 (241)
-+||.+-+- .++..+-+.|..+++++.+ +|+.+ .++++.+.+...|.+..||.-...+++.+ |+.+. -+
T Consensus 61 keLl~qlkH-hNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 61 KELLSQLKH-HNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHhhhcC-chHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 456666554 4455888999999999975 88644 47788888999999999999999988884 33442 24
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHH
Q 026208 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAI 149 (241)
Q Consensus 81 ~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~ 149 (241)
++-.++-+..-+..-.|.|. ..+..|=.++ +.++ .+.+....|.++..+++.|-..
T Consensus 139 ~~l~~~yi~~AMThit~~i~-----~dslkfL~~L---l~~~-----~p~~~~~~~~il~n~~d~i~~~ 194 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQ-----EDSLKFLSLL---LERY-----PDTFSRYASKILENFKDVISKL 194 (393)
T ss_pred HHHHHHHHHHHHhhccHHHH-----HhhHHHHHHH---HHHc-----ChHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555443 2222222222 1121 1245677777777777776543
No 53
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.42 E-value=44 Score=36.61 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=83.7
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhc
Q 026208 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRW 124 (241)
Q Consensus 45 ~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~ 124 (241)
.+|+-.-+-.....-..++...-+.|-+.-...++++..++|-|..=|..++..+-|.|+-..+.+|..-- .|+.
T Consensus 221 ~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-----~~l~ 295 (1266)
T KOG1525|consen 221 ANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-----SQLS 295 (1266)
T ss_pred HHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-----hhhc
Confidence 45555544322224456777777888888888999999999999888888899999999999998887655 3332
Q ss_pred cCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhc
Q 026208 125 HGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLF 173 (241)
Q Consensus 125 ~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~q 173 (241)
.....+|..+.. .+-.....||+.|+++.....+..
T Consensus 296 -----~~~~~~~~~fl~--------r~~D~~~~vR~~~v~~~~~~l~~~ 331 (1266)
T KOG1525|consen 296 -----ETYDDLWSAFLG--------RFNDISVEVRMECVESIKQCLLNN 331 (1266)
T ss_pred -----ccchHHHHHHHH--------HhccCChhhhhhHHHHhHHHHhcC
Confidence 456888987654 556688899999999998877663
No 54
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=68.31 E-value=44 Score=28.05 Aligned_cols=64 Identities=22% Similarity=0.349 Sum_probs=49.1
Q ss_pred hhcCCChHHHHHHHHHHHHHHhcC--CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH
Q 026208 16 ANNHGDLAVKLSSLKQVRGILSSA--DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS 82 (241)
Q Consensus 16 A~~~~d~~~kl~~L~q~relll~~--~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~ 82 (241)
....+|...+...+.=++-.+-.+ +| -+.+|.++.+..|+++.+|+-....+.+++.|++.++.
T Consensus 16 ~~~~~~~~vr~~Al~~l~~il~qGLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 16 LCLSSDDSVRLAALQVLELILRQGLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHhCCCHHHHHHHHHHHHHHHhcCCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 444466556666665555555333 77 89999999999999999999999999999999887644
No 55
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=66.30 E-value=3.8 Score=43.10 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=76.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCCCCCcccccccCCCccccccccCCCCCCCChh
Q 026208 128 VERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPV 207 (241)
Q Consensus 128 ~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~L~~~ 207 (241)
.+...+.+|+.+...=..|.. ...+.+.|+++..++|+...|-++++.-.|...+++.. -+.+.+..+.+|+-+..+
T Consensus 18 ~~e~~~~l~el~~~~~~~i~~-~l~~~~~~i~~~~~~~~~~lv~~ls~~l~d~~~~r~~~--i~~~~d~~~s~l~~i~~~ 94 (957)
T KOG1895|consen 18 SDELLTELLELLELNDGLIRC-LLVEILLEIGLKDFELCNKLVETLSPYLEDNPIVRRQS--IIKGADVARSNLEPIVLQ 94 (957)
T ss_pred cHhHHHHHHHHHhCCcchhhh-hHHHHHhhhhHHHHHhhhhHHHHhhhhhcCchhhHHHH--HhhhhhhhhhccHHHHHH
Confidence 456789999999999999998 77899999999999999999999999877764444432 356778889999999999
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 026208 208 SLTSEANRMLGTLMDLLQ 225 (241)
Q Consensus 208 ~Le~Ea~~lLd~LL~~l~ 225 (241)
-+-.|.+++.+.+=..+.
T Consensus 95 ~~~~~~~~~~~s~w~~~~ 112 (957)
T KOG1895|consen 95 FLHMEKNDLAESLWTAFH 112 (957)
T ss_pred HHhcchhHHHHHHHHHHH
Confidence 888888766666554443
No 56
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.80 E-value=1.1e+02 Score=34.29 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=80.4
Q ss_pred hHHhhhHHHHhhcC-CchhhHHHHHHHHHHHHhhchh----hhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHH
Q 026208 43 LAAELFPYLVELQS-SPESLVRKSLIETIEDIGLKAM----EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (241)
Q Consensus 43 ll~~~lp~vl~~~~-d~~~~vrk~~~~fiee~~~~~~----e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~ 117 (241)
.++.+||-+++-+- +.-.+||||.++.+-+..+... -|++++++.|...+..-.|.|+-....-+.++=-.++|-
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt 1206 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDT 1206 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHH
Confidence 55677776665432 3346999999999988766543 367778877777776666777766555555665566644
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHH------------HHHHHHhccCCCCchHHHHHHHHhHHhhh
Q 026208 118 ITMQFRWHGKVERWLEELWTWMVRFK------------DAVFAIALEPGLVGTKLLALKFLETHVLL 172 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K------------~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (241)
.=.. ++. ...+|+++..+- -+++..+..+.+.|.|..|.-|+-.+++=
T Consensus 1207 ~R~s-~ak------sspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r 1266 (1702)
T KOG0915|consen 1207 LRAS-AAK------SSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR 1266 (1702)
T ss_pred HHHh-hhc------CCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH
Confidence 3221 111 245666655544 45556455689999999999999555544
No 57
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=63.30 E-value=71 Score=29.39 Aligned_cols=101 Identities=20% Similarity=0.183 Sum_probs=64.2
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-hhhhHHHHHHHHHHh---hcCCChHHHHHHHHhhhhhhHHHHHHHhh
Q 026208 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHSSILMPVLLAF---LRDGDSGVAGKSIVCGTNFFCRVLEEITM 120 (241)
Q Consensus 45 ~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~-~~e~~~~~v~~L~~L---L~d~d~~V~K~aI~~~t~lY~~~l~~~~~ 120 (241)
+-+.|++++|-...+..||-.+.+++|.-... .+.+.+.+-+-+..+ |+|++..+..+++...-.++-.+= .
T Consensus 96 ~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~----~ 171 (307)
T PF04118_consen 96 PIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVG----D 171 (307)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcC----h
Confidence 56678888887788889999999999985432 234444333444444 567888888887776655543211 0
Q ss_pred hhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026208 121 QFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (241)
. ---+..|..+ -.+..+|..|++|+.+-.
T Consensus 172 ~--------~F~~~lwl~i-------------i~sp~~Rl~al~~l~~~l 200 (307)
T PF04118_consen 172 K--------YFWQCLWLCI-------------ITSPSRRLGALNYLLRRL 200 (307)
T ss_pred h--------HHHHHHHHHH-------------hcCcchhHHHHHHHHHhC
Confidence 0 0123344332 267899999999987654
No 58
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=62.99 E-value=34 Score=25.22 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=44.2
Q ss_pred HhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhh----cCCChHHHHHHHHhhh
Q 026208 45 AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFL----RDGDSGVAGKSIVCGT 108 (241)
Q Consensus 45 ~~~lp~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL----~d~d~~V~K~aI~~~t 108 (241)
..||...... ...++.++|..+.+-+..+.....+.+..-++++...+ .|++..+++.|.++..
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4455555444 56678899999999998877666555555455444444 5778888888887764
No 59
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.77 E-value=70 Score=26.29 Aligned_cols=121 Identities=18% Similarity=0.100 Sum_probs=70.7
Q ss_pred CchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch-hh----hHHHHHHHHHHhhc-CCChHHHHHHHHhhhhhhHHH
Q 026208 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-ME----HSSILMPVLLAFLR-DGDSGVAGKSIVCGTNFFCRV 114 (241)
Q Consensus 41 p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~-~e----~~~~~v~~L~~LL~-d~d~~V~K~aI~~~t~lY~~~ 114 (241)
...++.+...+..+-.+++.+-|=.++.++..+|..- .| +...-+..|...|+ .+++.+.+.+|.+.+.+|..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3466788888877766777777766777777666542 33 22223333334444 456788999999999999765
Q ss_pred HHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026208 115 LEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (241)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (241)
- ++-- . .-|-+=..+..+=...++ +.+. ..+...|+..+..++..+.
T Consensus 100 ~-----~~p~---l--~Rei~tp~l~~~i~~ll~-l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 100 R-----GKPT---L--TREIATPNLPKFIQSLLQ-LLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred c-----CCCc---h--HHHHhhccHHHHHHHHHH-HHhc--cccHHHHHHHHHHHHHHCC
Confidence 4 2210 0 111111224444444444 2222 6667777777777777665
No 60
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=58.92 E-value=1.3e+02 Score=26.88 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=81.8
Q ss_pred CChHHHHHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch---hh-hHHHHHHHHHHhhcC
Q 026208 20 GDLAVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA---ME-HSSILMPVLLAFLRD 94 (241)
Q Consensus 20 ~d~~~kl~~L~q~relll~~-~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~---~e-~~~~~v~~L~~LL~d 94 (241)
-|...|+.-|+-++.+-... +..++.+.+|.++.+-...+..+|-.+...+--..... .+ +..+++..+..|++.
T Consensus 107 lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 107 LNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS 186 (254)
T ss_pred CCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHcc
Confidence 46667888888888886544 23566777888877755667778888877776543221 12 244566677777775
Q ss_pred -CChHHHHHHHHhhhhhhHHHHHH--HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchH
Q 026208 95 -GDSGVAGKSIVCGTNFFCRVLEE--ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTK 159 (241)
Q Consensus 95 -~d~~V~K~aI~~~t~lY~~~l~~--~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr 159 (241)
++..++-+++.-+.+|....-.. ++.+|..+ ..+.-..+.-...+-+++.+ +.++...-||
T Consensus 187 ~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~---~~~L~~~~~e~~~~~~~l~~-l~~h~d~ev~ 250 (254)
T PF04826_consen 187 SESKENLLRVLTFFENINENIKKEAYVFVQDDFS---EDSLFSLFGESSQLAKKLQA-LANHPDPEVK 250 (254)
T ss_pred CCccHHHHHHHHHHHHHHHhhCcccceeccccCC---chhHHHHHccHHHHHHHHHH-HHcCCCHHHh
Confidence 47888999999988886654311 11122221 13333555555556666666 3344333343
No 61
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=56.96 E-value=92 Score=30.44 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHh---hcCCChHHH---HHHHHhhhhhhHHHHHHHhhhhhccCCccchH
Q 026208 59 ESLVRKSLIETIEDIGLKAMEHSSILMPVLLAF---LRDGDSGVA---GKSIVCGTNFFCRVLEEITMQFRWHGKVERWL 132 (241)
Q Consensus 59 ~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~L---L~d~d~~V~---K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~ 132 (241)
+.++|.+.=+-|+.++++.++++..=+..+..| |+++++.|. ..|+.+++..|+..-+
T Consensus 387 ~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~---------------- 450 (501)
T PF13001_consen 387 DIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD---------------- 450 (501)
T ss_pred cHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc----------------
Confidence 458999999999999988887653334444443 455555443 3333333444443221
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHH
Q 026208 133 EELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 133 ~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (241)
..=.........++....++....+|.+|+||+.++
T Consensus 451 -~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 451 -DEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred -chhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 000011112222333133456678999999999876
No 62
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=56.88 E-value=15 Score=21.91 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 84 LMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 84 ~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
+++.|..++..+++.+++.++.+..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455677777788888888888887765
No 63
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.58 E-value=1.7e+02 Score=28.89 Aligned_cols=115 Identities=10% Similarity=0.062 Sum_probs=75.9
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh----chhhhHHHHHH-HHHHhhcCCChHHHHHHHHhhhhhhHHHHH
Q 026208 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----KAMEHSSILMP-VLLAFLRDGDSGVAGKSIVCGTNFFCRVLE 116 (241)
Q Consensus 42 ~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~----~~~e~~~~~v~-~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~ 116 (241)
.++.+++-.+.+=+.|++.-+|.-.+.-|..... +-..|-..+++ .++.|..+.+..|+=.++.|.+-+-+.+-
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~- 332 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS- 332 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh-
Confidence 4778888877777889988888887765554321 22334444443 45666667778888888888877665443
Q ss_pred HHhhhhhccCCccchHHHHHHHHHHHH---HHHHHHhccCCCCchHHHHHHHHhHHhhhccCC
Q 026208 117 EITMQFRWHGKVERWLEELWTWMVRFK---DAVFAIALEPGLVGTKLLALKFLETHVLLFTSD 176 (241)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~W~~m~~~K---~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~ 176 (241)
.|+-+.-++ .++.. +|+++++-.|.+++-.....-.+-+++
T Consensus 333 ------------------~~~l~~~~l~ialrlR~-l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 333 ------------------NDDLESYLLNIALRLRT-LFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred ------------------hcchhhhchhHHHHHHH-HHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 233343344 44445 889999999999997776665554443
No 64
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.24 E-value=1.6e+02 Score=33.15 Aligned_cols=93 Identities=16% Similarity=0.162 Sum_probs=69.9
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCchH--HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCC
Q 026208 19 HGDLAVKLSSLKQVRGILSSADPSLA--AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (241)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~~p~ll--~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d 96 (241)
.+-.+-+...|+-+-.++ +.||..+ +.+...|-.=-.|.+.-||.-+.+++..-...++++..+--+.+..=..|..
T Consensus 827 e~~ialRtkAlKclS~iv-e~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtg 905 (1692)
T KOG1020|consen 827 ENAIALRTKALKCLSMIV-EADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTG 905 (1692)
T ss_pred CchHHHHHHHHHHHHHHH-hcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCc
Confidence 344456667777777777 5888766 3444444333358888999999999998778889988888888888888999
Q ss_pred hHHHHHHHHhhhhhhH
Q 026208 97 SGVAGKSIVCGTNFFC 112 (241)
Q Consensus 97 ~~V~K~aI~~~t~lY~ 112 (241)
..|-||||.-.--+|-
T Consensus 906 vsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 906 VSVRKRVIKILRDICE 921 (1692)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999986655543
No 65
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=54.56 E-value=2e+02 Score=28.83 Aligned_cols=144 Identities=13% Similarity=-0.011 Sum_probs=82.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc-----hHHhhhHHHHhh------c----CCchhhHHHHHHHHHHHHhhch----hhh
Q 026208 20 GDLAVKLSSLKQVRGILSSADPS-----LAAELFPYLVEL------Q----SSPESLVRKSLIETIEDIGLKA----MEH 80 (241)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~-----ll~~~lp~vl~~------~----~d~~~~vrk~~~~fiee~~~~~----~e~ 80 (241)
+|. +.+-.|-++-.-++ +||+ ++-+++|.++.- . .|+.=.+|.|-+.|+..+|+.. ..+
T Consensus 259 ~nL-~lL~~lm~m~rSLl-~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L 336 (576)
T KOG2549|consen 259 NNL-ELLIYLMRMVRSLL-DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNL 336 (576)
T ss_pred ccH-HHHHHHHHHHHHHh-cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344 44444444444444 5554 446777777732 2 2334489999999999999754 457
Q ss_pred HHHHHHHHHHhhcCC--ChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHH-HHHHHHHhcc-CCCC
Q 026208 81 SSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF-KDAVFAIALE-PGLV 156 (241)
Q Consensus 81 ~~~~v~~L~~LL~d~--d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~-K~~Il~~~~d-~~n~ 156 (241)
-+++..++...+.|. +....=-+|.+..-+=..+. ..|+. +.....|..+..- -..+.+...+ -++.
T Consensus 337 ~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I----~~~il-----p~L~~~~~~l~~~l~~~~~~n~~~i~ea~ 407 (576)
T KOG2549|consen 337 QPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVI----RTVIL-----PNLKEYNERLQSVLDVESLSNQLDIYEAN 407 (576)
T ss_pred HHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhh----hheec-----cchHHHHHHhhhhcccchhhhhhhhhhhh
Confidence 899999999998876 33444444444443333332 12222 3355666554432 1111211112 3566
Q ss_pred chHHHHHHHHhHHhhhcc
Q 026208 157 GTKLLALKFLETHVLLFT 174 (241)
Q Consensus 157 Gvr~~aiKF~e~vIl~qT 174 (241)
+|+.+-.|-...+|.-+-
T Consensus 408 ~v~~~llk~~~~ii~~~l 425 (576)
T KOG2549|consen 408 KVYGALLKAENPIIRDKL 425 (576)
T ss_pred hHHHHHHHHhhHHHHhhh
Confidence 788888888777655444
No 66
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=52.65 E-value=95 Score=23.13 Aligned_cols=60 Identities=17% Similarity=0.031 Sum_probs=47.1
Q ss_pred CchhhHHHHHHHHHHHHhhc----hhhhHHHHHHHHHHhhcCCC--hHHHHHHHHhhhhhhHHHHH
Q 026208 57 SPESLVRKSLIETIEDIGLK----AMEHSSILMPVLLAFLRDGD--SGVAGKSIVCGTNFFCRVLE 116 (241)
Q Consensus 57 d~~~~vrk~~~~fiee~~~~----~~e~~~~~v~~L~~LL~d~d--~~V~K~aI~~~t~lY~~~l~ 116 (241)
+.+-++|.+-++++..+|++ .+.+-+++..++...+.|++ ..+.=-||.+...+=+.+.+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~vr 82 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAVR 82 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44569999999999999975 46789999999999988764 45666777777777666663
No 67
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.57 E-value=72 Score=32.86 Aligned_cols=78 Identities=17% Similarity=0.179 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCCch---HHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch----hhhHHHHHHHHHHhhcCCCh
Q 026208 25 KLSSLKQVRGILSSADPSL---AAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----MEHSSILMPVLLAFLRDGDS 97 (241)
Q Consensus 25 kl~~L~q~relll~~~p~l---l~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~----~e~~~~~v~~L~~LL~d~d~ 97 (241)
+-+.+.-+-..++-..-++ +|.|+..+..++.|.+++|||.+..-+--..-.+ .-|+..+++-....-.|.|.
T Consensus 191 Rs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE 270 (885)
T KOG2023|consen 191 RSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDE 270 (885)
T ss_pred HHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcch
Confidence 4445555555555444443 3899999999999999999999875433222222 34666666665555567777
Q ss_pred HHHHH
Q 026208 98 GVAGK 102 (241)
Q Consensus 98 ~V~K~ 102 (241)
.|.=.
T Consensus 271 ~VALE 275 (885)
T KOG2023|consen 271 NVALE 275 (885)
T ss_pred hHHHH
Confidence 76533
No 68
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=51.29 E-value=1.1e+02 Score=26.09 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=46.7
Q ss_pred hHHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhh--------c----hhhhHHHHHHHHHHhhcCCCh-HHHHHHHHhhh
Q 026208 43 LAAELFPYLVEL-QSSPESLVRKSLIETIEDIGL--------K----AMEHSSILMPVLLAFLRDGDS-GVAGKSIVCGT 108 (241)
Q Consensus 43 ll~~~lp~vl~~-~~d~~~~vrk~~~~fiee~~~--------~----~~e~~~~~v~~L~~LL~d~d~-~V~K~aI~~~t 108 (241)
++++++|++... .+..+.+++.|+..|-.-.|. . -.++++.++.+++.+++-+.. ..++|+..-+-
T Consensus 81 ~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e 160 (174)
T PF04510_consen 81 FMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFE 160 (174)
T ss_pred HHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 335555555533 233357899999888766551 1 146899999999999987655 88888766655
Q ss_pred hhhH
Q 026208 109 NFFC 112 (241)
Q Consensus 109 ~lY~ 112 (241)
++.+
T Consensus 161 ~~v~ 164 (174)
T PF04510_consen 161 SFVS 164 (174)
T ss_pred HHHH
Confidence 5544
No 69
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=50.55 E-value=1.3e+02 Score=26.41 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchh-----hhHHHHHHHHHHhhcC
Q 026208 20 GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM-----EHSSILMPVLLAFLRD 94 (241)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~-----e~~~~~v~~L~~LL~d 94 (241)
.+.+.+++.|+..-..|+++-+.-...++|.++.. =+....|.++..++..-.+... +-+..++.-+...|.|
T Consensus 18 ~~s~rrlevlr~ci~~if~~k~~e~~k~~~av~~~--lk~~~aR~~~~~~L~~~~~~~k~~L~~~qF~~lv~lin~aLq~ 95 (225)
T PF12335_consen 18 ANSARRLEVLRNCISFIFDNKILEARKSLPAVLRA--LKSRSARQAFCRELSKHVKSNKAVLDDQQFDYLVRLINCALQD 95 (225)
T ss_pred hhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--HccchHHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHHHHH
Confidence 46668999999999999988777778899988763 3455789999999988665432 3344455555555654
Q ss_pred ----CChHHHHHHHHhhhhhhHH
Q 026208 95 ----GDSGVAGKSIVCGTNFFCR 113 (241)
Q Consensus 95 ----~d~~V~K~aI~~~t~lY~~ 113 (241)
+|-.+++...-..+.+||.
T Consensus 96 ~s~~dd~~~Aa~LL~ls~~fyrk 118 (225)
T PF12335_consen 96 CSESDDYGIAAALLPLSTAFYRK 118 (225)
T ss_pred HHhccchHHHHHHHHHHHHHHHH
Confidence 3667888878788888886
No 70
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=49.84 E-value=97 Score=27.80 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=44.5
Q ss_pred HHhhhHHHH-hhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhh
Q 026208 44 AAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (241)
Q Consensus 44 l~~~lp~vl-~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~ 107 (241)
+.++++.++ +--...+.++|++...-++-.|.-+.++...-++.+...+..+++.|.-.|+++.
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l 88 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKAL 88 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 346666665 2223455699999999999999888888777777777777555666655555443
No 71
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=49.78 E-value=1.8e+02 Score=27.10 Aligned_cols=102 Identities=12% Similarity=0.158 Sum_probs=66.2
Q ss_pred CchhhHHHHHHHHHHHHhhchhhh--HHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHH
Q 026208 57 SPESLVRKSLIETIEDIGLKAMEH--SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEE 134 (241)
Q Consensus 57 d~~~~vrk~~~~fiee~~~~~~e~--~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~ 134 (241)
.++.++..-+.+++...|.-.-|- ..+++.. +..+..+.|-+. -.+.+|..+.+.+- .+........
T Consensus 164 ~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~~-----~~k~sliAKLa~-qv~~~Y~~a~~~l~-----~~~~~~~~~~ 232 (353)
T cd09246 164 FRTPDLTAECLGMLESLMLAQAQECFYEKAVAD-----GKSPAVCSKLAK-QARSYYEEALEALD-----SPPLKGHFDK 232 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCccHHHHHHH-HHHHHHHHHHHHHh-----cccccccccH
Confidence 456677777888888877655442 2222210 223455566665 45679999995442 2223344578
Q ss_pred HHHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHH
Q 026208 135 LWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 135 ~W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~v 169 (241)
.|..+..+|...+.- ..+.+..|..++..+..+..
T Consensus 233 ~W~~~~~~K~~~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 276 (353)
T cd09246 233 SWVAHVQLKAAYFRAEALYRAAKDLHEKEDIGEEIARLRAASDA 276 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhcchHHHHHHHHHHHHH
Confidence 999999999888652 22567899999999988663
No 72
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=49.72 E-value=1e+02 Score=24.48 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHhHHhh
Q 026208 140 VRFKDAVFAIALEPGLVGTKLLALKFLETHVL 171 (241)
Q Consensus 140 ~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl 171 (241)
...|.+|.. +..+.|.-||-.|++-+|.++.
T Consensus 85 lg~K~~vM~-Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 85 LGAKERVME-LMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HSHHHHHHH-HTS-SSHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHH-HhcCCCHHHHHHHHHHHHHHHH
Confidence 348999999 6699999999999999999864
No 73
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=46.94 E-value=1.4e+02 Score=27.75 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=63.5
Q ss_pred chhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcC-CChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHH
Q 026208 58 PESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELW 136 (241)
Q Consensus 58 ~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d-~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W 136 (241)
++.++..-+.+++...|.-.-|-+- ......+. .+..+.|-+.++ +.+|..+++.+- .+ +.....|
T Consensus 158 ~s~Dl~~~~l~~L~~lmLAQAQE~~----~~Kai~~~~k~sliAKLa~qv-~~~Y~~a~~~l~-----~~---~~i~~~W 224 (355)
T cd09241 158 PPPDLDENTLKALESLMLAQAQECF----WQKAISDGTKDSLIAKLAAQV-SDYYQEALKYAN-----KS---DLIRSDW 224 (355)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH----HHHHHhcCCcchHHHHHHHHH-HHHHHHHHHHHh-----cC---CcccHHH
Confidence 6667777777888777765443221 01111122 345556666665 789999994442 22 4457899
Q ss_pred HHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHH
Q 026208 137 TWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 137 ~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~v 169 (241)
..+..+|...+.- ..+.+..|..++..|.....
T Consensus 225 ~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~ 266 (355)
T cd09241 225 INHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRVALAA 266 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999888642 22467889999988877664
No 74
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.28 E-value=74 Score=32.66 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=91.9
Q ss_pred CchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCC-ccchHHHH
Q 026208 57 SPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK-VERWLEEL 135 (241)
Q Consensus 57 d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~-~~~~~~~~ 135 (241)
|.--|||+-.+.=+.......|.+..++++-|-.+++|+...|-=++|-+++.|-... .++.. .+.-.+.+
T Consensus 384 DEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l--------~i~eeql~~il~~L 455 (823)
T KOG2259|consen 384 DEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL--------AIREEQLRQILESL 455 (823)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh--------eecHHHHHHHHHHH
Confidence 4445899987776666666789999999999999999999989888898887765431 11110 11223344
Q ss_pred HHHHHHHHHHHHHHhcc----CCCCchHHHHHHHHhHHhhhccCCCCCcccccccCCCcc--ccccccCCCCCCCChhhH
Q 026208 136 WTWMVRFKDAVFAIALE----PGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQT--FNISWLSGGHPFLDPVSL 209 (241)
Q Consensus 136 W~~m~~~K~~Il~~~~d----~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d--~sl~~vP~~Hp~L~~~~L 209 (241)
=+.+..++..+.. ++- ++-+++-+|..+.+.. .+.-+.| +++ -.+..+-.|||.+ +
T Consensus 456 ~D~s~dvRe~l~e-lL~~~~~~d~~~i~m~v~~lL~~----L~kyPqD---------rd~i~~cm~~iGqnH~~l----v 517 (823)
T KOG2259|consen 456 EDRSVDVREALRE-LLKNARVSDLECIDMCVAHLLKN----LGKYPQD---------RDEILRCMGRIGQNHRRL----V 517 (823)
T ss_pred HhcCHHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHH----hhhCCCC---------cHHHHHHHHHHhccChhh----H
Confidence 4555666666655 333 4445666655555422 2211111 112 2345677889865 5
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q 026208 210 TSEANRMLGTLMDLLQSACNL 230 (241)
Q Consensus 210 e~Ea~~lLd~LL~~l~~~~~~ 230 (241)
.+-+.++++....+-..++..
T Consensus 518 ~s~m~rfl~kh~~f~t~e~s~ 538 (823)
T KOG2259|consen 518 LSNMGRFLEKHTSFATIEPSL 538 (823)
T ss_pred HHHHHHHHHhcccccccCccc
Confidence 666778888777777755543
No 75
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.89 E-value=40 Score=35.42 Aligned_cols=84 Identities=21% Similarity=0.180 Sum_probs=60.8
Q ss_pred HHHHHHH-HHHHHHhcCCCchHHhhhHHHH----hh-cCCchhhHHHHHHHHHHH-HhhchhhhHHHHHH------HHHH
Q 026208 24 VKLSSLK-QVRGILSSADPSLAAELFPYLV----EL-QSSPESLVRKSLIETIED-IGLKAMEHSSILMP------VLLA 90 (241)
Q Consensus 24 ~kl~~L~-q~relll~~~p~ll~~~lp~vl----~~-~~d~~~~vrk~~~~fiee-~~~~~~e~~~~~v~------~L~~ 90 (241)
.+-+.|+ .+|+-++.++|.+++.|.-.++ +. .+..++.||.-+..-|.. +++...+++..++. .+..
T Consensus 528 ~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG 607 (1051)
T KOG0168|consen 528 KQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAG 607 (1051)
T ss_pred hhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHh
Confidence 4567788 8999999999998877754444 44 456678999999887776 46667776665553 5677
Q ss_pred hhcCCChHHHHHHHHhh
Q 026208 91 FLRDGDSGVAGKSIVCG 107 (241)
Q Consensus 91 LL~d~d~~V~K~aI~~~ 107 (241)
+|..+|+.|+=-|.|-+
T Consensus 608 ~lsskD~~vlVgALQvA 624 (1051)
T KOG0168|consen 608 MLSSKDLTVLVGALQVA 624 (1051)
T ss_pred hhhcCCCeeEeehHHHH
Confidence 78888887766666544
No 76
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.78 E-value=4.4e+02 Score=28.60 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.8
Q ss_pred cCCCCchHHHHHHHHhHHhhhcc
Q 026208 152 EPGLVGTKLLALKFLETHVLLFT 174 (241)
Q Consensus 152 d~~n~Gvr~~aiKF~e~vIl~qT 174 (241)
|++.. ||+.|++-+-.++....
T Consensus 170 d~s~~-vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 170 DPSSP-VRVAAVRALGAFAEYLE 191 (1075)
T ss_pred CCcch-HHHHHHHHHHHHHHHhc
Confidence 44444 99999999888877664
No 77
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=44.26 E-value=1.9e+02 Score=31.17 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=74.3
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh-----chhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHH
Q 026208 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGL-----KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEE 117 (241)
Q Consensus 43 ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~-----~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~ 117 (241)
.+.+++|++..|--...-.+|--...++.+..+ ...+.+..++.-+..|+.+.|-.|...++.+.+.+...-.
T Consensus 648 ~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~p-- 725 (1233)
T KOG1824|consen 648 VLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQP-- 725 (1233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccc--
Confidence 345667766666433333455555555655433 2346677777788888888888888888877766543211
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHhHHhhhccCC
Q 026208 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEP-GLVGTKLLALKFLETHVLLFTSD 176 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~-~n~Gvr~~aiKF~e~vIl~qT~~ 176 (241)
...-..++.+=+.|+.++..+ -..|.--++.+|.+..|....++
T Consensus 726 ---------------s~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~ 770 (1233)
T KOG1824|consen 726 ---------------SSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPD 770 (1233)
T ss_pred ---------------HHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCC
Confidence 223344555777777744332 34677788999999988887765
No 78
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.95 E-value=1.3e+02 Score=30.40 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=51.8
Q ss_pred HHHHHhcCCCc-hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----hchhhhHHHHHHHHHHhhcCCChHHHH
Q 026208 32 VRGILSSADPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIG----LKAMEHSSILMPVLLAFLRDGDSGVAG 101 (241)
Q Consensus 32 ~relll~~~p~-ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~----~~~~e~~~~~v~~L~~LL~d~d~~V~K 101 (241)
.++++.+.+++ =+++|+|=+=+--...++..|.|+++.|--.- .....|++..++-|..+|.|+.+.|..
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~ 226 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRT 226 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHH
Confidence 45666666654 45888885545556678899999999996542 233568999999999999999987763
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.00 E-value=92 Score=32.29 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=76.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHh-------------hcC--CchhhHHHHHHHHHHHHh------
Q 026208 20 GDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVE-------------LQS--SPESLVRKSLIETIEDIG------ 74 (241)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~----ll~~~lp~vl~-------------~~~--d~~~~vrk~~~~fiee~~------ 74 (241)
+|...+-...+=.=||+ .++|. |.|.||.=+.. |+. .-.+.++|-+++=|.+.-
T Consensus 193 pDp~V~SAAV~VICELA-rKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~Am 271 (877)
T KOG1059|consen 193 PDPSVVSAAVSVICELA-RKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAM 271 (877)
T ss_pred CCchHHHHHHHHHHHHH-hhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHH
Confidence 45444445555556777 58884 66787773321 111 113566666665443321
Q ss_pred -----------h--------chhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHH
Q 026208 75 -----------L--------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEEL 135 (241)
Q Consensus 75 -----------~--------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~ 135 (241)
+ .+..-+..|+.-|+.++.|.|+..-=-+..|++-+ ++. ..
T Consensus 272 SLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI--------~kt------------Hp 331 (877)
T KOG1059|consen 272 SLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKI--------LKT------------HP 331 (877)
T ss_pred HHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHH--------hhh------------CH
Confidence 0 12334667777888888888887654444443322 221 12
Q ss_pred HHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026208 136 WTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (241)
Q Consensus 136 W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (241)
| .+.+.|+-|++ .++...+.||+-|+-.+...|
T Consensus 332 ~-~Vqa~kdlIlr-cL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 332 K-AVQAHKDLILR-CLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred H-HHHHhHHHHHH-HhccCCchhHHHHHHHHHHHh
Confidence 2 46778999999 668899999999998876654
No 80
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=42.65 E-value=2.3e+02 Score=24.74 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=30.3
Q ss_pred HHhhchhhhHHHHHHHHHHhhcCC----ChHHHHHHHHhhhhhhHHHH
Q 026208 72 DIGLKAMEHSSILMPVLLAFLRDG----DSGVAGKSIVCGTNFFCRVL 115 (241)
Q Consensus 72 e~~~~~~e~~~~~v~~L~~LL~d~----d~~V~K~aI~~~t~lY~~~l 115 (241)
-+.+++|++.++++++|..+-.+. .+...|..+.+.--.||..|
T Consensus 142 ~Iak~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l 189 (239)
T PF11935_consen 142 NIAKQRPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFL 189 (239)
T ss_dssp HHHHHSGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHH
Confidence 344677888888888888775554 45556666777777777777
No 81
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.36 E-value=2.6e+02 Score=28.32 Aligned_cols=104 Identities=10% Similarity=0.137 Sum_probs=65.8
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh-hHHHHH
Q 026208 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME-HSSILM 85 (241)
Q Consensus 11 ~lln~A~~~~d~~~kl~~L~q~relll~~~p~----ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e-~~~~~v 85 (241)
+-|..-........|+..|+=..-+. ++.|. ..+++++.+|..-+|++.+|=-...+.+..+|..... +..+.+
T Consensus 339 ~vl~~~l~~~~~~tri~~L~Wi~~l~-~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl 417 (675)
T KOG0212|consen 339 EVLTKYLSDDREETRIAVLNWIILLY-HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFL 417 (675)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHH-hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHH
Confidence 33333334444557888898888766 68885 3488889888777899988888888999999875433 344444
Q ss_pred HHHHHhhcCCC-------hHHHHHH--HHhhhhhhHHHH
Q 026208 86 PVLLAFLRDGD-------SGVAGKS--IVCGTNFFCRVL 115 (241)
Q Consensus 86 ~~L~~LL~d~d-------~~V~K~a--I~~~t~lY~~~l 115 (241)
..|..+...+. +-++|+- ..-+..+|+..-
T Consensus 418 ~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a 456 (675)
T KOG0212|consen 418 LSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIA 456 (675)
T ss_pred HHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHH
Confidence 44555544433 3333332 223466777644
No 82
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=41.63 E-value=1.3e+02 Score=22.04 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHH
Q 026208 22 LAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIED 72 (241)
Q Consensus 22 ~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee 72 (241)
..+.+..|++|..++.. .+..+.+.+.++.+-. ..+++ -+.+++||+.
T Consensus 29 s~~~i~~l~~ayr~l~~-~~~~~~~a~~~l~~~~-~~~~~-v~~~~~Fi~~ 76 (83)
T PF13720_consen 29 SKEEISALRRAYRILFR-SGLTLEEALEELEEEY-PDSPE-VREIVDFIRN 76 (83)
T ss_dssp -HHHHHHHHHHHHHHHT-SSS-HHHHHHHHHHHT-TSCHH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHhc-cCCHH-HHHHHHHHHh
Confidence 34799999999999985 4467778888886522 22444 4556688873
No 83
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=41.48 E-value=1.9e+02 Score=27.65 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=6.6
Q ss_pred hcCCChHHHHHHHHhh
Q 026208 92 LRDGDSGVAGKSIVCG 107 (241)
Q Consensus 92 L~d~d~~V~K~aI~~~ 107 (241)
|+|+|+.|...++.+.
T Consensus 156 L~d~d~~Vra~A~raL 171 (410)
T TIGR02270 156 LTHEDALVRAAALRAL 171 (410)
T ss_pred hcCCCHHHHHHHHHHH
Confidence 3344444444444433
No 84
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.25 E-value=57 Score=33.94 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=53.7
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 40 ~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
.|++.+.+.|+|-++-..+++-+||-.+--...+-++.|++....+..-+.+|.+.+++|.=.++.-++.+.
T Consensus 136 s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence 577888888888887556788888887655555567889998888889999999988887655544444333
No 85
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=40.93 E-value=3.1e+02 Score=25.64 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcC--CchhhHHHHHHHHHHHHhhchhhhHHHH
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQS--SPESLVRKSLIETIEDIGLKAMEHSSIL 84 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~--d~~~~vrk~~~~fiee~~~~~~e~~~~~ 84 (241)
+++++-|......+.. -.+.++++-|.+++-+- +.++.+++.+. ..++++...+.+|++. ..+..+++..+
T Consensus 13 ~~~i~sl~~~~~~~s~--s~~s~~~~t~~Lle~~Q----evv~~ile~~~di~~~~~L~~Lv~~YFd~-S~~a~~~C~~L 85 (336)
T PF05055_consen 13 NRVISSLATGVETRSL--SFDSLKEVTECLLEMNQ----EVVKVILECKKDIWKNPELFRLVSDYFDS-SLEASDFCEAL 85 (336)
T ss_pred HHHHHHhhhccccCCC--ChHHHHHHHHHHhCCCh----HHHHHHHHHHHHhhcChhHHHHHHHHHHh-hHHHHHHHHHH
Confidence 4555555544433333 28999999999987665 56666666653 3688999999999964 33334443333
Q ss_pred HHHHHHhhcCCChHHHHHHHHhh------------hhhhHHHHHHHhh
Q 026208 85 MPVLLAFLRDGDSGVAGKSIVCG------------TNFFCRVLEEITM 120 (241)
Q Consensus 85 v~~L~~LL~d~d~~V~K~aI~~~------------t~lY~~~l~~~~~ 120 (241)
...+...=. +...++++++.+ .+-|..+|+++..
T Consensus 86 ~k~I~~aR~--~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~ 131 (336)
T PF05055_consen 86 LKCIHRARD--NYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKK 131 (336)
T ss_pred HHHHHHHHH--HhHHHHHHHHhhhhccccccccccchhHHHHHHHHHh
Confidence 333332111 123444444433 4667777777763
No 86
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=40.82 E-value=28 Score=29.35 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhc
Q 026208 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLF 173 (241)
Q Consensus 108 t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~q 173 (241)
..=|+.=|..+|..--. + ..+. ....+|..|...+.+....|||++++-|+..++=-.
T Consensus 39 ~~~Y~~d~n~mcd~i~~-~-----~~S~--~I~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k~ 96 (167)
T PF11099_consen 39 KNDYKRDFNSMCDIIEA-N-----DISY--NIDDIKNEVIEILLSDNRPSVKLATISLISIIIEKW 96 (167)
T ss_dssp HHHTHHHHHHHHHHHHC-C-----CCTT---HHHHHHHHHHHCCHT--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHhc-c-----cccc--cHHHHHHHHHHHHhccCCCceeehHHHHHHHHHHHH
Confidence 44577777777763221 1 1122 566789999885655777999999999998876433
No 87
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=40.67 E-value=1.3e+02 Score=22.81 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCC-ChHHHHHHHHhhhhhhHHHH
Q 026208 63 RKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG-DSGVAGKSIVCGTNFFCRVL 115 (241)
Q Consensus 63 rk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~-d~~V~K~aI~~~t~lY~~~l 115 (241)
|..++.+...+.. +||--...+..|..+..+. +..|.|-|+.+...+|+-++
T Consensus 5 K~~IA~l~~~ile-~PE~ni~~lk~l~~~~~~~~~~~v~kLa~lSl~~VFkDIi 57 (95)
T PF07540_consen 5 KEEIASLASSILE-DPEENIGSLKRLLKLCESKVDVTVRKLAILSLLAVFKDII 57 (95)
T ss_pred HHHHHHHHHHHHH-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcC
Confidence 3444444444433 5554444566777887887 89999999999999888665
No 88
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=40.52 E-value=2.8e+02 Score=28.24 Aligned_cols=101 Identities=22% Similarity=0.150 Sum_probs=55.9
Q ss_pred CChHHHHH---HHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCC
Q 026208 20 GDLAVKLS---SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGD 96 (241)
Q Consensus 20 ~d~~~kl~---~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d 96 (241)
.+..++++ -|-++--.+-++.|..+.-++|.+..+-....++=+-.+-.+.--+..+.++.+.+++|.|..-+.|.+
T Consensus 170 v~~~siLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~ 249 (851)
T KOG3723|consen 170 VIVKSILSGNTMLLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDST 249 (851)
T ss_pred HHHHHHhccchHHHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcccc
Confidence 44555555 133344444457776665566665555333333333333333334567789999999999998888765
Q ss_pred h-----HHHHHHHHhhhhhhHH---HHHHHhh
Q 026208 97 S-----GVAGKSIVCGTNFFCR---VLEEITM 120 (241)
Q Consensus 97 ~-----~V~K~aI~~~t~lY~~---~l~~~~~ 120 (241)
. .+.|..-+-.-..-+. .++++++
T Consensus 250 ~~~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~ 281 (851)
T KOG3723|consen 250 HNDIILNILKEIAVYEPVALNSFLEMLKEIGE 281 (851)
T ss_pred chhHHHHHHHHHHhcCccchhhHHHHHHHHHH
Confidence 3 4455544444333333 3444444
No 89
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=39.81 E-value=2.2e+02 Score=26.74 Aligned_cols=84 Identities=12% Similarity=0.255 Sum_probs=51.9
Q ss_pred hcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCC---ChH-----HHHHHHHhhhhhhHHHHHHHhhhhhcc
Q 026208 54 LQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG---DSG-----VAGKSIVCGTNFFCRVLEEITMQFRWH 125 (241)
Q Consensus 54 ~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~---d~~-----V~K~aI~~~t~lY~~~l~~~~~~~~~~ 125 (241)
|.+.++.++..-+.+++...|.-.-|=+- +...+.|. +.. +.|-|.++ +.+|..+.+.+ ..
T Consensus 152 ~~~~ps~Dls~~~L~~L~~LmLAQAQEc~-----~~Kai~d~~~k~~~~~~~~lAklA~qv-~~~Y~~a~~~~-----~~ 220 (350)
T cd09244 152 FSNAPSMDLSPEMLEALIKLMLAQAQECV-----FEKLVLPGEDSKDIQACLDLAQEAAQV-SDCYSEVHKLM-----NQ 220 (350)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHhccccccchhHHHHHHHHHHHH-HHHHHHHHHHH-----hc
Confidence 44556667777777777776654332111 11111222 222 67888888 89999999443 22
Q ss_pred CCccchHHHHHHHHHHHHHHHHH
Q 026208 126 GKVERWLEELWTWMVRFKDAVFA 148 (241)
Q Consensus 126 ~~~~~~~~~~W~~m~~~K~~Il~ 148 (241)
+.+.......|..+..+|...+.
T Consensus 221 ~~~~~~i~~~W~~~v~~K~~~f~ 243 (350)
T cd09244 221 EPVKDYIPYSWISLVEVKSEHYK 243 (350)
T ss_pred cccccccCHHHHHHHHHHHHHHH
Confidence 33445567899999999988763
No 90
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=39.60 E-value=2.4e+02 Score=26.59 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHHHhcC-CCc-hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh
Q 026208 21 DLAVKLSSLKQVRGILSSA-DPS-LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH 80 (241)
Q Consensus 21 d~~~kl~~L~q~relll~~-~p~-ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~ 80 (241)
...||.+.|+=+|.++.-+ .|. +-..++-.+++.+.+++..+|.-+.+.+.|++..+|++
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 3459999999999999653 453 44677778888887888899999999999998766654
No 91
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=38.94 E-value=96 Score=31.09 Aligned_cols=66 Identities=23% Similarity=0.192 Sum_probs=39.8
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch-hhhHHHHHHHHHHhhcCCChHHHHHHHHhhhh
Q 026208 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTN 109 (241)
Q Consensus 43 ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~-~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~ 109 (241)
+++..++.+.+- ..++...--++++-+++...+. ...++.+++.+..-|.|..|.|.|.++.|+..
T Consensus 255 llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 255 LLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 334444433332 3344444455555555543333 34577788888888888888888888888764
No 92
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=38.61 E-value=1.1e+02 Score=24.96 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=31.9
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcC
Q 026208 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD 94 (241)
Q Consensus 42 ~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d 94 (241)
.++.+|||.- =...+++.++.++|++++...+.....++..+..-+..
T Consensus 81 ~iL~~yLP~~-----lseeEi~~~v~~~i~e~ga~~~k~mG~vMk~l~~~~~G 128 (143)
T PF09424_consen 81 EILEEYLPKQ-----LSEEEIEAIVEEAIAELGASSMKDMGKVMKALMAKLKG 128 (143)
T ss_dssp HHHGGGS----------HHHHHHHHHHHHHHTT--BGGGHHHHHHHHHHHHTT
T ss_pred HHHHHhCcCC-----CCHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Confidence 3556777753 23558999999999999877777788888877765553
No 93
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=37.89 E-value=2.8e+02 Score=26.33 Aligned_cols=81 Identities=20% Similarity=0.162 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHH--HHHHHHHHHhhc-hh----hhHHHHHHHHHHhhcCCChHH
Q 026208 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRK--SLIETIEDIGLK-AM----EHSSILMPVLLAFLRDGDSGV 99 (241)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk--~~~~fiee~~~~-~~----e~~~~~v~~L~~LL~d~d~~V 99 (241)
.+|.+.-....++||++...++.+++-. .|-..-.| ...+.+++++.. .+ .....+...+...+..+...|
T Consensus 236 ~~L~~~~~~f~~kdp~l~~~~i~~llk~--WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qV 313 (409)
T PF01603_consen 236 QQLSYCVVQFLEKDPSLAEPVIKGLLKH--WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQV 313 (409)
T ss_dssp HHHHHHHHHHHHH-GGGHHHHHHHHHHH--S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHh--CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 6777777888889999999999999764 44333333 344666666542 22 233444444555566777888
Q ss_pred HHHHHHhhhh
Q 026208 100 AGKSIVCGTN 109 (241)
Q Consensus 100 ~K~aI~~~t~ 109 (241)
+.+|+....+
T Consensus 314 AErAl~~w~n 323 (409)
T PF01603_consen 314 AERALYFWNN 323 (409)
T ss_dssp HHHHHGGGGS
T ss_pred HHHHHHHHCC
Confidence 8887765433
No 94
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=37.17 E-value=63 Score=22.36 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHH
Q 026208 28 SLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSL 66 (241)
Q Consensus 28 ~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~ 66 (241)
++.+.|+++ ..+|++++.++..+ ...++.+...+
T Consensus 9 qf~~lR~~v-q~NP~lL~~lLqql----~~~nP~l~q~I 42 (59)
T PF09280_consen 9 QFQQLRQLV-QQNPQLLPPLLQQL----GQSNPQLLQLI 42 (59)
T ss_dssp HHHHHHHHH-HC-GGGHHHHHHHH----HCCSHHHHHHH
T ss_pred HHHHHHHHH-HHCHHHHHHHHHHH----hccCHHHHHHH
Confidence 567788888 59998777777765 23455544443
No 95
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=35.90 E-value=1.7e+02 Score=30.44 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHh-cCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch--hhhHHHHHHHHHHhhcCCChHHH
Q 026208 24 VKLSSLKQVRGILS-SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA--MEHSSILMPVLLAFLRDGDSGVA 100 (241)
Q Consensus 24 ~kl~~L~q~relll-~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~--~e~~~~~v~~L~~LL~d~d~~V~ 100 (241)
.+...|..+-+++- ...+..-..|+|-+..+..|+.++||-=++.++..+.+.- +..=..+.+.+..|..|++..|-
T Consensus 573 ~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr 652 (759)
T KOG0211|consen 573 VRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVR 652 (759)
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchh
Confidence 34455555555543 2455666889999999999999999999999999876531 22223334455566679988887
Q ss_pred HHHHHhhhhh
Q 026208 101 GKSIVCGTNF 110 (241)
Q Consensus 101 K~aI~~~t~l 110 (241)
=+|+++.+.+
T Consensus 653 ~~a~~a~~~i 662 (759)
T KOG0211|consen 653 YRAILAFGSI 662 (759)
T ss_pred HHHHHHHHHH
Confidence 7778777654
No 96
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.56 E-value=3.4e+02 Score=25.52 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=59.5
Q ss_pred CCChHHHHHHHHHHHHHHhcCCC-c-hH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH-----HHHHHHHH
Q 026208 19 HGDLAVKLSSLKQVRGILSSADP-S-LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS-----ILMPVLLA 90 (241)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~~p-~-ll-~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~-----~~v~~L~~ 90 (241)
+.|..+|...|-..++++.+=|- . |. -+.++.++.+-.+.+.+||..-+..|..+....|---. ..+..|..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 37888999999999999965332 1 22 34555566665678889999999999987754332111 12334444
Q ss_pred hhcCCCh-HHHHHHHHhhhhhhHH
Q 026208 91 FLRDGDS-GVAGKSIVCGTNFFCR 113 (241)
Q Consensus 91 LL~d~d~-~V~K~aI~~~t~lY~~ 113 (241)
.|..+++ .|-++|.-+.+++.|.
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn 197 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRN 197 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhc
Confidence 5554444 4445555566666653
No 97
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=35.05 E-value=5.2e+02 Score=26.54 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=65.5
Q ss_pred HhcCCCchHHhhhHHHHhh--c---CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHH---hhcCCChHHHHHHHHhh
Q 026208 36 LSSADPSLAAELFPYLVEL--Q---SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA---FLRDGDSGVAGKSIVCG 107 (241)
Q Consensus 36 ll~~~p~ll~~~lp~vl~~--~---~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~---LL~d~d~~V~K~aI~~~ 107 (241)
+...+|+++..++..+... - .|-+.-+|--..-=+..-+.-.|+++.+.. -+++ +|.|...+|-+.+..
T Consensus 260 l~~ln~sl~~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~-~lry~GW~LSDn~~~vRl~v~K-- 336 (740)
T COG5537 260 LYDLNPSLIRDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL-GLRYNGWSLSDNHEGVRLLVSK-- 336 (740)
T ss_pred HHhhcchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh-cccccccccccchHHHHHHHHH--
Confidence 3345787754444444321 1 244444554443333333445566655443 2322 356777776655432
Q ss_pred hhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026208 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (241)
Q Consensus 108 t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (241)
++.++|-+ + +.-...=.-+..+|++|+... -.+.+-||+|++|-++..=.+-.
T Consensus 337 ------il~~L~s~-~------p~~d~ir~f~eRFk~rILE~~-r~D~d~VRi~sik~l~~lr~lg~ 389 (740)
T COG5537 337 ------ILLFLCSR-I------PHTDAIRRFVERFKDRILEFL-RTDSDCVRICSIKSLCYLRILGV 389 (740)
T ss_pred ------HHHHHHhc-C------CcchHHHHHHHHHHHHHHHHH-hhccchhhHHHHHHHHHHHHhcc
Confidence 23222222 1 111255567788999999954 44444499999999987655544
No 98
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=34.91 E-value=5.6e+02 Score=26.88 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=83.0
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHH---HHhhcC--CchhhHHHHHHHHHHHHhhchh
Q 026208 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPY---LVELQS--SPESLVRKSLIETIEDIGLKAM 78 (241)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~---vl~~~~--d~~~~vrk~~~~fiee~~~~~~ 78 (241)
++.+++.+..|.++.+ ++.-=...+++++|+.- + ..|-.+|+.. ++-.-- .....+=+|++-|++..-..++
T Consensus 2 ~~~~r~~~If~k~Q~s-~agh~~kl~~k~~em~t-~-~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~ 78 (892)
T KOG2025|consen 2 SSLERMQLIFNKIQQS-DAGHYSKLLAKVMEMLT-A-HEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDK 78 (892)
T ss_pred hHHHHHHHHHHHHHhh-hcchHHHHHHHHHHhhh-H-hhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCc
Confidence 5678889999988875 21112455677777662 2 2233444442 222211 2234788999999987765544
Q ss_pred hhHHHHHHHHHHhhc---CCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCC
Q 026208 79 EHSSILMPVLLAFLR---DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGL 155 (241)
Q Consensus 79 e~~~~~v~~L~~LL~---d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n 155 (241)
+.= -+-+++..+|+ ..|-.|-+|+.|-.+ .+.+.. + .-++.. ++.++..++..+.| .-
T Consensus 79 e~D-lV~~~f~hlLRg~Eskdk~VRfrvlqila----~l~d~~-------~---eidd~v---fn~l~e~l~~Rl~D-re 139 (892)
T KOG2025|consen 79 EED-LVAGTFYHLLRGTESKDKKVRFRVLQILA----LLSDEN-------A---EIDDDV---FNKLNEKLLIRLKD-RE 139 (892)
T ss_pred hhh-HHHHHHHHHHhcccCcchhHHHHHHHHHH----HHhccc-------c---ccCHHH---HHHHHHHHHHHHhc-cC
Confidence 321 22234555555 457788888776433 333211 1 112333 45577788875544 44
Q ss_pred CchHHHHHHHHhHH
Q 026208 156 VGTKLLALKFLETH 169 (241)
Q Consensus 156 ~Gvr~~aiKF~e~v 169 (241)
..||+.|++-+.+.
T Consensus 140 p~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 140 PNVRIQAVLALSRL 153 (892)
T ss_pred chHHHHHHHHHHHH
Confidence 57999999888664
No 99
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=34.67 E-value=57 Score=34.99 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=64.2
Q ss_pred HHHHHhcCCCchHHhhhHHHH-hhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 32 VRGILSSADPSLAAELFPYLV-ELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 32 ~relll~~~p~ll~~~lp~vl-~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
.-.+.+ .+-.|+..++|.+. +++......+|.-++=-+.++|..++-+.-+-+|.+.+-|.|.++.|-|++|--.+.+
T Consensus 955 lakmcL-ah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rL 1033 (1529)
T KOG0413|consen 955 LAKMCL-AHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARL 1033 (1529)
T ss_pred HHHHHh-hhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 334444 34456666777665 6677788899999988899999999988888889999999999999999998877776
Q ss_pred hHH
Q 026208 111 FCR 113 (241)
Q Consensus 111 Y~~ 113 (241)
...
T Consensus 1034 Lq~ 1036 (1529)
T KOG0413|consen 1034 LQF 1036 (1529)
T ss_pred Hhh
Confidence 554
No 100
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=33.56 E-value=3.5e+02 Score=31.64 Aligned_cols=108 Identities=10% Similarity=0.099 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHhcCC--CchH---HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch
Q 026208 4 VSRDQALSLLAAANNH-GDLAVKLSSLKQVRGILSSAD--PSLA---AELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (241)
Q Consensus 4 ~~~~~v~~lln~A~~~-~d~~~kl~~L~q~relll~~~--p~ll---~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~ 77 (241)
.+...|..|+.+-... ....+|-..+++.|++.-+++ -.++ ++++|.++.+-...+..+|...+..+...+..
T Consensus 10 ~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~- 88 (2102)
T PLN03200 10 GTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKE- 88 (2102)
T ss_pred chHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 5677888888887754 344577888999999997552 2344 45889888886667788999888777766543
Q ss_pred hhh-----HHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHH
Q 026208 78 MEH-----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (241)
Q Consensus 78 ~e~-----~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l 115 (241)
.++ ...+++.|..+|+..++...+.|. +.||-+..
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA---~AL~sLS~ 128 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAA---EAIYAVSS 128 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH---HHHHHHHc
Confidence 222 356777888888887776655543 34444443
No 101
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.02 E-value=6.4e+02 Score=27.01 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred CccchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc-----hHHhhhHHHHhhcC-CchhhHHHHHHH---HHH
Q 026208 1 MAAVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS-----LAAELFPYLVELQS-SPESLVRKSLIE---TIE 71 (241)
Q Consensus 1 m~~~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~-----ll~~~lp~vl~~~~-d~~~~vrk~~~~---fie 71 (241)
|..+++.++-.||..-..++|-..|++.|.+.=|++.-.+-. ..+.++|.++.+-. ..+.++--..+. ++-
T Consensus 161 ~~~sasSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ 240 (1051)
T KOG0168|consen 161 IGSSASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLC 240 (1051)
T ss_pred ccccchHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 345677799999999999989999999999999988755332 45778888877743 334433222222 222
Q ss_pred HHhh----------------------chhhhHHHHHHHHHHhhcCCChHHHH
Q 026208 72 DIGL----------------------KAMEHSSILMPVLLAFLRDGDSGVAG 101 (241)
Q Consensus 72 e~~~----------------------~~~e~~~~~v~~L~~LL~d~d~~V~K 101 (241)
|+|. .+.+++.+++.+|.++-++...+++|
T Consensus 241 evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~ 292 (1051)
T KOG0168|consen 241 EVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQ 292 (1051)
T ss_pred hhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHh
Confidence 3331 12455677777777777766554443
No 102
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.74 E-value=94 Score=32.07 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=40.7
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCC
Q 026208 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG 95 (241)
Q Consensus 40 ~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~ 95 (241)
+++.++++++++.+.+.+-+.+.-|-.+.-|..+..+..+- ..|++.|..+++-.
T Consensus 344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~ 398 (734)
T KOG1061|consen 344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETK 398 (734)
T ss_pred hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhc
Confidence 34455677787777777777776666667777766666666 89999999999844
No 103
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=32.59 E-value=2.1e+02 Score=31.58 Aligned_cols=83 Identities=22% Similarity=0.346 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhcC-CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh-------chhh-hHHHHHHHHHHhhc
Q 026208 23 AVKLSSLKQVRGILSSA-DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL-------KAME-HSSILMPVLLAFLR 93 (241)
Q Consensus 23 ~~kl~~L~q~relll~~-~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~-------~~~e-~~~~~v~~L~~LL~ 93 (241)
..|++.|.=++++...- +-..+|-++|+++-+-.|+...||-....-+.++.. .+.. +-..+.|.|..|+.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~ 517 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLN 517 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhc
Confidence 36888888888888654 446889999999999999999999888777766542 1111 34556679999999
Q ss_pred CCChHHHHHHHH
Q 026208 94 DGDSGVAGKSIV 105 (241)
Q Consensus 94 d~d~~V~K~aI~ 105 (241)
|.++..++-+..
T Consensus 518 d~~~~~vRiayA 529 (1431)
T KOG1240|consen 518 DSSAQIVRIAYA 529 (1431)
T ss_pred cCccceehhhHH
Confidence 977766665544
No 104
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.30 E-value=1.2e+02 Score=26.89 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=48.5
Q ss_pred chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 42 SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 42 ~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
.+|+-|++.+-++-++-.---|.=+.++|.--+.+-.-.+++++..|..-|...|-.|.+++.+....+
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~l 182 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQL 182 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 377889998888766555544555667776555455567888888888888888888887776655443
No 105
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.08 E-value=1.8e+02 Score=29.99 Aligned_cols=105 Identities=22% Similarity=0.207 Sum_probs=58.7
Q ss_pred HHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhh---hhhhHHHHHHHhhhhhccCC
Q 026208 51 LVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG---TNFFCRVLEEITMQFRWHGK 127 (241)
Q Consensus 51 vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~---t~lY~~~l~~~~~~~~~~~~ 127 (241)
++.+.+|.+..||+..++=+-...- -.++-..+......++.|++..|-|.|||.. ++.||.=
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~------------- 268 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP------------- 268 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc-------------
Confidence 3344556666667666654432211 1223333444555667888888888887754 4444411
Q ss_pred ccchHHHHHHHHHHHHHHHHHH---hccCCCCchHHHHHHHH------hHHhhhcc
Q 026208 128 VERWLEELWTWMVRFKDAVFAI---ALEPGLVGTKLLALKFL------ETHVLLFT 174 (241)
Q Consensus 128 ~~~~~~~~W~~m~~~K~~Il~~---~~d~~n~Gvr~~aiKF~------e~vIl~qT 174 (241)
.+++.++ .+++++.++. +....+.|||+.|.|.+ .+=+|-||
T Consensus 269 ~e~e~~e-----~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QT 319 (823)
T KOG2259|consen 269 LERESEE-----EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQT 319 (823)
T ss_pred ccchhhh-----hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHH
Confidence 1111111 2344444432 44578899999999975 44577787
No 106
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=31.97 E-value=1.7e+02 Score=29.39 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc------------------hh---
Q 026208 24 VKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK------------------AM--- 78 (241)
Q Consensus 24 ~kl~~L~q~relll~~~p~----ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~------------------~~--- 78 (241)
+|...|.-+.-+. .-.|. .+++++|.+.+.-.|..++||+...+-+-..|.. +|
T Consensus 270 tK~aslellg~m~-~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~ 348 (569)
T KOG1242|consen 270 TKMASLELLGAMA-DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCY 348 (569)
T ss_pred hHHHHHHHHHHHH-HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccc
Confidence 4555555555333 23443 4578888887888899999999999887776531 11
Q ss_pred -------------------hhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHH
Q 026208 79 -------------------EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (241)
Q Consensus 79 -------------------e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~ 114 (241)
.=+..+++.|+.=+++.+...-|.+++...++|.++
T Consensus 349 ~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 349 TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 123344455555555566666677777777777666
No 107
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.93 E-value=5.4e+02 Score=28.98 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=75.3
Q ss_pred hhcCCchhhHHHHHHHHHHHHhhch------hhhHHHHHHHHHHhhc-------CC---------ChHHHHHHHHhhhhh
Q 026208 53 ELQSSPESLVRKSLIETIEDIGLKA------MEHSSILMPVLLAFLR-------DG---------DSGVAGKSIVCGTNF 110 (241)
Q Consensus 53 ~~~~d~~~~vrk~~~~fiee~~~~~------~e~~~~~v~~L~~LL~-------d~---------d~~V~K~aI~~~t~l 110 (241)
+...|...+||+-.++-+-.+.-.+ .-+-.-++..+.-||. ++ -....=..|+..+-+
T Consensus 1004 ~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1004 DLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 5566888999999988776765433 2244555556666665 11 122233568888999
Q ss_pred hHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026208 111 FCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (241)
Q Consensus 111 Y~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (241)
|+.-| +-.-+. +.--+.|+.+-++-.+-. .+++.-+++++||-+|+++.-..
T Consensus 1084 f~e~f-----k~llnl---n~f~~vwe~ll~flkrl~----s~~s~e~slsai~~~qell~sii 1135 (1610)
T KOG1848|consen 1084 FSENF-----KLLLNL---NGFLDVWEELLQFLKRLH----SDISPEISLSAIKALQELLFSII 1135 (1610)
T ss_pred HHHHH-----HHHHhc---ccHHHHHHHHHHHHHHHH----hcCChHhHHHHHHHHHHHHHHHh
Confidence 99988 443333 556788888877655543 45888999999999999987655
No 108
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.82 E-value=4.1e+02 Score=26.43 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=71.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcC-CCc----hHHhhhHHHHhhc-CCchhhHHHHHHHHHHHHhhchhhh---
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSA-DPS----LAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKAMEH--- 80 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~-~p~----ll~~~lp~vl~~~-~d~~~~vrk~~~~fiee~~~~~~e~--- 80 (241)
.+.+-++..+.|...++....+.|.++... +|- .-.+.+|.++++- .+.++.++-..|--+.-++....+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 344455556677778999999999999642 342 2257788888774 4666778777777777777644432
Q ss_pred --HHHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 81 --SSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 81 --~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
-..+++.+..|+...+..|..+|+.+.+++
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNI 179 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNI 179 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhcc
Confidence 234566788899999999999999988876
No 109
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=31.78 E-value=1.3e+02 Score=30.12 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=48.7
Q ss_pred CCchHHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhc------hhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 40 DPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLK------AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 40 ~p~ll~~~lp~vl~~-~~d~~~~vrk~~~~fiee~~~~------~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
+|+.+.+.+-.+-.+ ...+..-+|=-+++|+.-.++. +...++.+..-...||+|++..|.-+|+.+++..
T Consensus 473 ~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~F 550 (559)
T PF14868_consen 473 DPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQF 550 (559)
T ss_pred ChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 444444444444333 2444445888889999877642 2346777777777889999999999999988753
No 110
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.64 E-value=3.1e+02 Score=28.20 Aligned_cols=85 Identities=22% Similarity=0.138 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcCCCc---hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----hchhhhHHHHHHHHHHhhcCCCh
Q 026208 25 KLSSLKQVRGILSSADPS---LAAELFPYLVELQSSPESLVRKSLIETIEDIG----LKAMEHSSILMPVLLAFLRDGDS 97 (241)
Q Consensus 25 kl~~L~q~relll~~~p~---ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~----~~~~e~~~~~v~~L~~LL~d~d~ 97 (241)
=+.-|+.--+..+.++|. +.+.++-.+|-..-.++..||+-+.++|.-+. -.+..+...++.-|..-+-|..+
T Consensus 67 il~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~ 146 (885)
T COG5218 67 ILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREK 146 (885)
T ss_pred HHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchH
Confidence 356666777777778885 77888888887777788889999888887643 23445555555556555567677
Q ss_pred HHHHHHHHhhhh
Q 026208 98 GVAGKSIVCGTN 109 (241)
Q Consensus 98 ~V~K~aI~~~t~ 109 (241)
+|-..|+.|.+-
T Consensus 147 ~VR~eAv~~L~~ 158 (885)
T COG5218 147 AVRREAVKVLCY 158 (885)
T ss_pred HHHHHHHHHHHH
Confidence 777777666553
No 111
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.26 E-value=1e+02 Score=32.53 Aligned_cols=126 Identities=14% Similarity=0.187 Sum_probs=72.8
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhh--ch--hhhHHHHHHHHHHhhcCCChHHHHHHHH---hhhhhhHH-HHHH
Q 026208 46 ELFPYLVELQSSPESLVRKSLIETIEDIGL--KA--MEHSSILMPVLLAFLRDGDSGVAGKSIV---CGTNFFCR-VLEE 117 (241)
Q Consensus 46 ~~lp~vl~~~~d~~~~vrk~~~~fiee~~~--~~--~e~~~~~v~~L~~LL~d~d~~V~K~aI~---~~t~lY~~-~l~~ 117 (241)
+-+.+.++..+|+.+.+|-.+...+..... ++ -..-.+++.....+|+|+|+.|+=.||+ |..-.||. +|+.
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~d 806 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPD 806 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHH
Confidence 446666666677777777766665555443 22 2356678888889999999999999999 66666775 4555
Q ss_pred HhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhccCCCCCcc
Q 026208 118 ITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFTSDSNDFE 181 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~ 181 (241)
+.-.+.-..+-.+ =+.....=+.|++.+..-|. .+.||.+.+|-++=.|..||+
T Consensus 807 L~e~Y~s~k~k~~-----~d~~lkVGEai~k~~qa~Ge-----l~~~y~~~Li~tfl~gvrepd 860 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQ-----TDYRLKVGEAILKVAQALGE-----LVFKYKAVLINTFLSGVREPD 860 (982)
T ss_pred HHHHHHhcccCCC-----ccceehHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHhcCCch
Confidence 5444443222110 11111222444443322222 345566666666666655553
No 112
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=31.15 E-value=1.5e+02 Score=29.91 Aligned_cols=72 Identities=10% Similarity=-0.019 Sum_probs=39.6
Q ss_pred hhHHHHhhcCCchhhHHHHHHHHHHHHhhc---------------hhhhHHHHHHHHHHhhcCCCh-HHHHHHHHhh-hh
Q 026208 47 LFPYLVELQSSPESLVRKSLIETIEDIGLK---------------AMEHSSILMPVLLAFLRDGDS-GVAGKSIVCG-TN 109 (241)
Q Consensus 47 ~lp~vl~~~~d~~~~vrk~~~~fiee~~~~---------------~~e~~~~~v~~L~~LL~d~d~-~V~K~aI~~~-t~ 109 (241)
=+.+.++++..=..|-|.|+.+|+|++.-. ....+.++.+.|-.+=.+.+. .+....|.-. -.
T Consensus 483 gl~et~eLA~~L~~Esr~WFL~FVE~aLD~gf~~~~~~~~~~IA~~LsQLKrVNdWLD~v~~~~~~~~~~~E~ierLrkK 562 (579)
T PF06075_consen 483 GLKETAELAKQLQEESRSWFLKFVEKALDAGFKKSRGEDDGQIAGMLSQLKRVNDWLDEVGSGSNESEELVETIERLRKK 562 (579)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccCCCcchHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence 455555655444568999999999997411 123455566666555433333 2233333333 45
Q ss_pred hhHHHHHHH
Q 026208 110 FFCRVLEEI 118 (241)
Q Consensus 110 lY~~~l~~~ 118 (241)
||..+|.+|
T Consensus 563 IY~fLL~HV 571 (579)
T PF06075_consen 563 IYGFLLTHV 571 (579)
T ss_pred HHHHHHHHH
Confidence 677766443
No 113
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=31.07 E-value=4.5e+02 Score=24.63 Aligned_cols=99 Identities=11% Similarity=0.118 Sum_probs=62.1
Q ss_pred chhhHHHHHHHHHHHHhhch-hhh-HHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHH
Q 026208 58 PESLVRKSLIETIEDIGLKA-MEH-SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEEL 135 (241)
Q Consensus 58 ~~~~vrk~~~~fiee~~~~~-~e~-~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~ 135 (241)
++.++..-+.+++...|.-+ .|. +.+++. ....++++-+.-.-.+.+|..+.+.+. +. ++.....
T Consensus 168 p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~------~k~k~sliaKLA~q~a~~Y~~A~~~l~-----~~--~~~i~~~ 234 (353)
T cd09243 168 KGSDLDPRVLEAYINQCTAEAQEVTVARAIE------LKHNAGLISALAYETAKLFQKADDSLS-----SL--DPEYSGK 234 (353)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHH------cccchHHHHHHHHHHHHHHHHHHHHHH-----cC--CccccHH
Confidence 55677777888887776543 332 333332 123455554444455668999984442 11 1335667
Q ss_pred HHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHH
Q 026208 136 WTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 136 W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~v 169 (241)
|..+..+|...+.- ..+.+..|.-+++.|-.+..
T Consensus 235 W~~~v~~K~~~f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~ 277 (353)
T cd09243 235 WRKYLQLKSVFYLAYAYCYHGETLLAKDKCGEAIRSLQESEKL 277 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcchHHHHHHHHHHHHHH
Confidence 99999999887642 22466779999998877763
No 114
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.99 E-value=2.2e+02 Score=21.09 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch
Q 026208 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (241)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~ 77 (241)
+.++-.+|.++-..+|..+=... ++|+- -|.+.++++-.++....+.+..-|+.++.++...+...
T Consensus 2 rk~i~~~l~ey~~~~d~~ea~~~---l~el~---~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 2 RKKIFSILMEYFSSGDVDEAVEC---LKELK---LPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHH---HHHTT----GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhcCCCHHHHHHH---HHHhC---CCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 45677788888887885444444 45542 33667788888887777777889999999998887543
No 115
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=30.88 E-value=2.5e+02 Score=21.67 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhc---CCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHH
Q 026208 7 DQALSLLAAANN---HGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIED 72 (241)
Q Consensus 7 ~~v~~lln~A~~---~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee 72 (241)
|.++.-++.|.. .+|...+-..|.++++++. ++.. -|. .+...++.+.+..+-..
T Consensus 27 d~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~--------~L~~-~Ld--~e~g~eia~~L~~lY~y 84 (122)
T PF02561_consen 27 DGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIIT--------ELQS-SLD--FEKGGEIADNLFRLYDY 84 (122)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--------HHHH-TCC--TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHh-hcC--CCCCcHHHHHHHHHHHH
Confidence 344555555553 4888888899999988883 3333 222 23346676666665543
No 116
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=30.12 E-value=5.4e+02 Score=25.78 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=89.6
Q ss_pred HHHHhhcC-CchhhHHHHHHHHHHHHhhchhhhHHHHH-----HHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhh
Q 026208 49 PYLVELQS-SPESLVRKSLIETIEDIGLKAMEHSSILM-----PVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQF 122 (241)
Q Consensus 49 p~vl~~~~-d~~~~vrk~~~~fiee~~~~~~e~~~~~v-----~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~ 122 (241)
-.|+.++. ...+++.|.++++||-.++--.+.+..++ +.+.+-.+-.||.+++++.++.+++-=..=..+- +-
T Consensus 224 ~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~q-rr 302 (832)
T KOG3678|consen 224 GVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQ-RR 302 (832)
T ss_pred hhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHH-HH
Confidence 33444543 34579999999999887765555444333 3344444567899999999998876422221111 11
Q ss_pred hccCCccchHHHHHHHHHHH-HHHHHHH-----------hccCCCCchHHHHHHHHhHHhhhccCCCCCcccccccCCCc
Q 026208 123 RWHGKVERWLEELWTWMVRF-KDAVFAI-----------ALEPGLVGTKLLALKFLETHVLLFTSDSNDFENFTKEGSKQ 190 (241)
Q Consensus 123 ~~~~~~~~~~~~~W~~m~~~-K~~Il~~-----------~~d~~n~Gvr~~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~ 190 (241)
++.. -..-|=...++ |+.+++. --+-+.+=-|--++|.+|-+|.+.-|+.=.-+..+...
T Consensus 303 mveK-----r~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQ--- 374 (832)
T KOG3678|consen 303 MVEK-----RAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQ--- 374 (832)
T ss_pred HHHh-----hhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhc---
Confidence 1111 12223322222 3444432 00122333344567788887777766531100111110
Q ss_pred cccccccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 026208 191 TFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLL 224 (241)
Q Consensus 191 d~sl~~vP~~Hp~L~~~~Le~Ea~~lLd~LL~~l 224 (241)
.-.-+|+-.--|+|+-..+|+.+.+.|-..+...
T Consensus 375 G~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAa 408 (832)
T KOG3678|consen 375 GRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAA 408 (832)
T ss_pred cCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHH
Confidence 1122455666789999999999888876655443
No 117
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.61 E-value=5.4e+02 Score=28.20 Aligned_cols=95 Identities=27% Similarity=0.269 Sum_probs=60.8
Q ss_pred HHHHHHHHhhcCCChHHHHHH-HHHHHHHHhcCCCchHHhhhHHHH----hhcCCchhhHHHHHHHHHHHHhhchhh---
Q 026208 8 QALSLLAAANNHGDLAVKLSS-LKQVRGILSSADPSLAAELFPYLV----ELQSSPESLVRKSLIETIEDIGLKAME--- 79 (241)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~-L~q~relll~~~p~ll~~~lp~vl----~~~~d~~~~vrk~~~~fiee~~~~~~e--- 79 (241)
..+..|.+. ..+|..-.... +-++..++.+-.-.+=+++++.++ .+-...+.++++-.++||--.+.+.|+
T Consensus 785 efl~~Isag-l~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l 863 (1176)
T KOG1248|consen 785 EFLSIISAG-LVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL 863 (1176)
T ss_pred HHHHHHHhh-hcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 345555544 44554333333 667777766432222244444444 445688899999999999877776654
Q ss_pred --hHHHHHHHHHHhhcCCChHHHHHH
Q 026208 80 --HSSILMPVLLAFLRDGDSGVAGKS 103 (241)
Q Consensus 80 --~~~~~v~~L~~LL~d~d~~V~K~a 103 (241)
|.+.+++.+..++.|....+.+.+
T Consensus 864 ~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 864 SPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 677788888888888776665554
No 118
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.23 E-value=2.4e+02 Score=20.97 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch
Q 026208 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (241)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~ 77 (241)
+.++-.+++++-..+|..+=.+.+.. |- -|.+.++++-.++....+....-|+.++.++...|...
T Consensus 2 ~k~i~~~l~ey~~~~D~~ea~~~l~~---L~---~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 2 KKKIFLIIEEYLSSGDTDEAVHCLLE---LK---LPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHH---hC---CCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 45677888999988887555555543 32 24566788888887777776778999999999888644
No 119
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=28.67 E-value=2.9e+02 Score=29.51 Aligned_cols=100 Identities=21% Similarity=0.364 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC---chHHhhhHHHHhhcCCch---hhHHHHHHHHHHHHhhchh---
Q 026208 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADP---SLAAELFPYLVELQSSPE---SLVRKSLIETIEDIGLKAM--- 78 (241)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p---~ll~~~lp~vl~~~~d~~---~~vrk~~~~fiee~~~~~~--- 78 (241)
.+.-||=||..-+|...|++.|+-...++....+ .-++.++|.++.+..|.+ ..||--..+-++-....-|
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 4567888999889999999999999999864432 345778888888866654 5677666666654433222
Q ss_pred --hhHHHHHHHHHHhhcCCChHHHHHHHHhh
Q 026208 79 --EHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (241)
Q Consensus 79 --e~~~~~v~~L~~LL~d~d~~V~K~aI~~~ 107 (241)
-+-+.++..|..-|.|.--.|-|.|+.|=
T Consensus 989 l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 24667777777777777556666665553
No 120
>PRK05685 fliS flagellar protein FliS; Validated
Probab=28.39 E-value=3e+02 Score=21.78 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=28.6
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHH
Q 026208 18 NHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDI 73 (241)
Q Consensus 18 ~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~ 73 (241)
..+|.+++-..|.++++++. ++...+ + .+...++-+.+.++.+.+
T Consensus 47 ~~~~~~~~~~~l~ka~~Ii~--------eL~~sL-d--~e~ggeiA~~L~~LY~y~ 91 (132)
T PRK05685 47 EQGDIEAKGEYLSKAINIIN--------GLRNSL-D--MEKGGEVAKNLSALYDYM 91 (132)
T ss_pred HcCCHHHHHHHHHHHHHHHH--------HHHhhc-C--CccccHHHHHHHHHHHHH
Confidence 34888888888888888873 444322 2 344457777777666543
No 121
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=27.72 E-value=5.7e+02 Score=26.93 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch------hhhHHHHHHHHHHhhcCCChHH
Q 026208 26 LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA------MEHSSILMPVLLAFLRDGDSGV 99 (241)
Q Consensus 26 l~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~------~e~~~~~v~~L~~LL~d~d~~V 99 (241)
.+.|..+-+.+.+ ..-+..+.+.|+++..+.++.+|-++..|+..-.++. .+-+..+++.+....+|.+..|
T Consensus 353 ~d~l~~~~d~~~n--s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~V 430 (815)
T KOG1820|consen 353 RDALLKALDAILN--STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDV 430 (815)
T ss_pred HHHHHHHHHHHHh--cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHH
Confidence 3555555555554 3345677888888877888878777777775433322 1347777788888889999999
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhhh
Q 026208 100 AGKSIVCGTNFFCRVLEEITMQFR 123 (241)
Q Consensus 100 ~K~aI~~~t~lY~~~l~~~~~~~~ 123 (241)
-+-+--+++.+|+..=+.+..+.+
T Consensus 431 R~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 431 RKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999988877777654
No 122
>PF04793 Herpes_BBRF1: BRRF1-like protein; InterPro: IPR006878 Most proteins in this entry are uncharacterised viral proteins translated from gene 49. The UL6 locus of pseudorabies virus (PRV) has a gene cluster with homology to herpes simplex virus UL5, UL6, UL7 and UL8, Epstein-Barr virus BBRF1 and BBRF2, and Kaposi sarcoma-associated herpes virus ORF43 and ORF42 [].
Probab=27.53 E-value=2.2e+02 Score=26.05 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhhcC---CC------hHHHHHHHHHHHHHHh-cC--CCchHHhhhHHHH----hhcCCchhhHHHHHHH
Q 026208 5 SRDQALSLLAAANNH---GD------LAVKLSSLKQVRGILS-SA--DPSLAAELFPYLV----ELQSSPESLVRKSLIE 68 (241)
Q Consensus 5 ~~~~v~~lln~A~~~---~d------~~~kl~~L~q~relll-~~--~p~ll~~~lp~vl----~~~~d~~~~vrk~~~~ 68 (241)
.-++|+..++..... ++ ..+|..-|-++-..+. |+ +|..+|.+...++ .+..-...+.++++-+
T Consensus 5 d~~~vv~el~~i~~~~~~~~~~~p~~~leR~~fL~kv~q~L~qhr~~E~~Ivp~i~~ni~y~L~~L~~~~~~~~~~~i~~ 84 (284)
T PF04793_consen 5 DIGQVVHELNTISVSTRVPRSSHPLLALERGLFLLKVCQVLMQHRQSEPFIVPKIRSNIIYFLEELKELSPGDCQEAIKE 84 (284)
T ss_pred CHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 357888888888763 22 1245555555544444 33 6767776666554 1222334567888888
Q ss_pred HHHHH-hhchhhhHHHHHHHHHHhhcCCChHH
Q 026208 69 TIEDI-GLKAMEHSSILMPVLLAFLRDGDSGV 99 (241)
Q Consensus 69 fiee~-~~~~~e~~~~~v~~L~~LL~d~d~~V 99 (241)
.+.++ -..+..+...+...+..++..+.|..
T Consensus 85 ~L~~l~~~~d~~L~~~L~~~l~~ll~~~yP~~ 116 (284)
T PF04793_consen 85 ILDHLEEAGDSNLERELAKGLPKLLGCKYPHI 116 (284)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHhhhCCCc
Confidence 88875 45566666666666666665554433
No 123
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=27.44 E-value=5.5e+02 Score=28.53 Aligned_cols=115 Identities=20% Similarity=0.328 Sum_probs=74.3
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcC---CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh--chh
Q 026208 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSA---DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL--KAM 78 (241)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~---~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~--~~~ 78 (241)
|..+=++=||.+|..-+.-..=+..|..+.-|+... -|.. -+++..++.|---++.=+|+++.+||.++.. .+.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 456778999999998766556677777777766433 3434 4777888888778999999999999998743 334
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHH--HHHhh-hhhhHHHHHHHh
Q 026208 79 EHSSILMPVLLAFLRDGDSGVAGK--SIVCG-TNFFCRVLEEIT 119 (241)
Q Consensus 79 e~~~~~v~~L~~LL~d~d~~V~K~--aI~~~-t~lY~~~l~~~~ 119 (241)
+.-.+++|.++-++.-.-..+-|. -++|. --+=|.+|.+++
T Consensus 731 dvyc~l~P~irpfl~~~v~~i~s~~~LlsclkpPVsRsv~~~l~ 774 (1431)
T KOG1240|consen 731 DVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPPVSRSVFNQLL 774 (1431)
T ss_pred hheEEeehhhHHhhhccHhhhcchHHHHHHhcCCCcHHHHHHHH
Confidence 444455566666665332333333 23343 334455555554
No 124
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=27.44 E-value=1.6e+02 Score=24.36 Aligned_cols=59 Identities=22% Similarity=0.169 Sum_probs=28.5
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHh
Q 026208 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVC 106 (241)
Q Consensus 46 ~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~ 106 (241)
.+.+.+.+...+.+.-+||+..-.+-....+ +....++..+..++.|++.-|.|-+=-+
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~~~l~~~~~~~~d~~~~vq~ai~w~ 178 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFDELLEIIEALLKDEEYYVQKAIGWA 178 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHHHHHHHHHHCTTGS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3444444444566666666665443222222 4445555555555566655555444333
No 125
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=27.32 E-value=7.6e+02 Score=26.26 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=51.5
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-----hhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHH
Q 026208 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-----AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (241)
Q Consensus 43 ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~-----~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~ 114 (241)
+++.+.-++|-.-.++++.+|.+.++++..+... ..+++..+=-.|-..|..++|.|+-.++-+..+||-..
T Consensus 796 ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 796 YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 4566666676666788999999999999886532 22345555555677788889999887777777777654
No 126
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.14 E-value=8.5e+02 Score=26.58 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=68.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh-----chhh
Q 026208 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGL-----KAME 79 (241)
Q Consensus 9 v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~----ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~-----~~~e 79 (241)
+.+++-+...+++-.++-..|-..--+. ++.+. .+|+++|-|+.+-.|+++.||--...-|..... ....
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~-EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIA-EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 4566777777788777766666555444 34442 557888888888789999999877766665431 1122
Q ss_pred hHHHHHHHHHHhhcC-CChHHHHHHHHhhhhhhHHHH
Q 026208 80 HSSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRVL 115 (241)
Q Consensus 80 ~~~~~v~~L~~LL~d-~d~~V~K~aI~~~t~lY~~~l 115 (241)
+-.++.+.|...+.| +++.|..+|..|+-+..-.+-
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~ 464 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD 464 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc
Confidence 333444556666665 467888888887766655444
No 127
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=26.95 E-value=3.8e+02 Score=27.97 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=42.8
Q ss_pred hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch-hhhHHHHHH-HHHHhhcCCChHHHHHHHHhh
Q 026208 43 LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-MEHSSILMP-VLLAFLRDGDSGVAGKSIVCG 107 (241)
Q Consensus 43 ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~-~e~~~~~v~-~L~~LL~d~d~~V~K~aI~~~ 107 (241)
+.+..+|.+.+++.|..-.+|.-+.+++...+... .++...-.. .+..-+.|....+.+++..++
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNL 542 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 55888999999999998899999999998876432 344322222 333335565556666655544
No 128
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=26.58 E-value=2.3e+02 Score=23.14 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=40.0
Q ss_pred HHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHH
Q 026208 49 PYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (241)
Q Consensus 49 p~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (241)
+.+.+...+.+.-+||++..++.....+ ......+++.+..++.|++.-|.|-+--+...++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 4444556677778888887777554443 344566666666667777776666655555555443
No 129
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=26.45 E-value=1.2e+02 Score=25.88 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh
Q 026208 26 LSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH 80 (241)
Q Consensus 26 l~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~ 80 (241)
++++.+.|+++++.+... ..+.+++.|...++..=|+=+++.|--.|+-...|
T Consensus 85 lS~~~~gR~~~l~~~~~~--~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYD--GPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred hcCCHHHHHHHhCchhhh--hHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 567788999998665533 25666666755566656666778998888866554
No 130
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=26.25 E-value=1.9e+02 Score=22.03 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=44.5
Q ss_pred HHHhcCCCchHHhhhHHHHhhcCCc-hh--hHHHHHHHHHHHHhh---------ch-------hhhHHHHHHHHHHhhcC
Q 026208 34 GILSSADPSLAAELFPYLVELQSSP-ES--LVRKSLIETIEDIGL---------KA-------MEHSSILMPVLLAFLRD 94 (241)
Q Consensus 34 elll~~~p~ll~~~lp~vl~~~~d~-~~--~vrk~~~~fiee~~~---------~~-------~e~~~~~v~~L~~LL~d 94 (241)
+++.+..|+--++|++.+++..... .. -+=+.+..+.||+.. +. .+..+.+++.+...+..
T Consensus 14 ~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~ 93 (148)
T PF08389_consen 14 EIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQ 93 (148)
T ss_dssp HHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445777778888888763332 11 234444555666542 11 13466666666666654
Q ss_pred CC----hHHHHHHHHhhhhhhH
Q 026208 95 GD----SGVAGKSIVCGTNFFC 112 (241)
Q Consensus 95 ~d----~~V~K~aI~~~t~lY~ 112 (241)
.. +.+++.++.|+.+..+
T Consensus 94 ~~~~~~~~~~~~~L~~l~s~i~ 115 (148)
T PF08389_consen 94 SSSEANEELVKAALKCLKSWIS 115 (148)
T ss_dssp HCHCCHHHHHHHHHHHHHHHTT
T ss_pred hccccHHHHHHHHHHHHHHHHH
Confidence 32 6777777777766544
No 131
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=25.91 E-value=2.3e+02 Score=19.67 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=34.3
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhH
Q 026208 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (241)
Q Consensus 56 ~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (241)
.||..+.|+...+.|++-+-.+.+-+..++..- |.=.++..=+-.+.+++.+.-
T Consensus 2 ~DP~~DFr~SM~EMI~~~~i~~~~~LeeLL~cY---L~LN~~~~H~~Iv~aF~dv~~ 55 (59)
T PF04844_consen 2 SDPYEDFRESMVEMIEENGIRDWDDLEELLACY---LSLNSPEHHKFIVEAFVDVWV 55 (59)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHhCChhhhhHHHHHHHHHHH
Confidence 467789999999999987777666666554333 333334444555556655543
No 132
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=25.85 E-value=7.4e+02 Score=26.98 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcC----CchhhHHHHHHHHHHHHhhch
Q 026208 4 VSRDQALSLLAAANNH--GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQS----SPESLVRKSLIETIEDIGLKA 77 (241)
Q Consensus 4 ~~~~~v~~lln~A~~~--~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~----d~~~~vrk~~~~fiee~~~~~ 77 (241)
+.--++..-+.+|... .+.+.|++.|.-.-+.+. +..+++++|=+.++-+.. .+...|||--+-.|......-
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls-r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~ 205 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS-RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC 205 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH-hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc
Confidence 3345666667777755 555589999999888884 888889898888886542 345678888776666644322
Q ss_pred -hhhHHHHHHHHHHhhc-CCChHHHHHHHHhhhhhhHHHH
Q 026208 78 -MEHSSILMPVLLAFLR-DGDSGVAGKSIVCGTNFFCRVL 115 (241)
Q Consensus 78 -~e~~~~~v~~L~~LL~-d~d~~V~K~aI~~~t~lY~~~l 115 (241)
.+....+++.|..=|. -..+..++.-|||.+.+-|.+=
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag 245 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG 245 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 2344444444444333 3457888999999998877643
No 133
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.27 E-value=5e+02 Score=28.57 Aligned_cols=93 Identities=20% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHH
Q 026208 6 RDQALSLLAAANNH--GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSI 83 (241)
Q Consensus 6 ~~~v~~lln~A~~~--~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~ 83 (241)
|+-+++.+-.+... .|. +.-.+.+++|. +|++-+.+=-.|-++-+|--+.+.++.+|..+......
T Consensus 329 Rnavlei~~n~V~~~l~d~-e~~~~sk~~r~-----------~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~ 396 (1251)
T KOG0414|consen 329 RNAVLEICANLVASELRDE-ELEEMSKSLRD-----------ELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGS 396 (1251)
T ss_pred HHHHHHHHHHHHHHHhcch-hhhHHHHHHHH-----------HHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccH
Q ss_pred HHHHHHHh---hcCCChHHHHHHHHhhhhh
Q 026208 84 LMPVLLAF---LRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 84 ~v~~L~~L---L~d~d~~V~K~aI~~~t~l 110 (241)
--+.+... |.|.+..|-|.||+-...+
T Consensus 397 ~~eV~~la~grl~DkSslVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 397 RTEVLELAIGRLEDKSSLVRKNAIQLLSSL 426 (1251)
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHH
No 134
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=25.15 E-value=7e+02 Score=29.34 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=52.0
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh-----HHHHHHHHHHhhcCCChHHHHHHHHhhhhhhH
Q 026208 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (241)
Q Consensus 46 ~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~-----~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (241)
+-+|.+.++....+..+++.-+..|+.+|....+. ....++.|..+|.+.+..+.|.+..+.+++++
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 46677777777778889999999998888655443 23456677888888888899999999888884
No 135
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=24.98 E-value=6.9e+02 Score=24.79 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhhcCCCh---HHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcC-CchhhHHHHHHHHHHHHhhchhhh
Q 026208 5 SRDQALSLLAAANNHGDL---AVKLSSLKQVRGILSSADPSLAAELFPYLVELQS-SPESLVRKSLIETIEDIGLKAMEH 80 (241)
Q Consensus 5 ~~~~v~~lln~A~~~~d~---~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~-d~~~~vrk~~~~fiee~~~~~~e~ 80 (241)
..+++++.++......|. .+-...|+++..-+-.-+.. -..++..|+.+-= +.+.++++-..+|+...+..++.+
T Consensus 30 ~Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~y 108 (563)
T PF05327_consen 30 QYDELVEQLSDPSESKDAISVSQLIRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKY 108 (563)
T ss_dssp HHHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGG
T ss_pred HHHHHHHHHcccccCcccccHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 345666666433322332 34556666666665433444 4677888877732 467788999999999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 026208 81 SSILMPVLLAFLRD 94 (241)
Q Consensus 81 ~~~~v~~L~~LL~d 94 (241)
+..|+..|-..+..
T Consensus 109 l~~vl~~LV~~f~p 122 (563)
T PF05327_consen 109 LSPVLSMLVKNFIP 122 (563)
T ss_dssp HHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHhccC
Confidence 99998888877653
No 136
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=23.99 E-value=9.8e+02 Score=26.84 Aligned_cols=135 Identities=14% Similarity=0.190 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHh-----hhHHHHhhcCCchhhHHHHHHHHHHHH-----h--
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAE-----LFPYLVELQSSPESLVRKSLIETIEDI-----G-- 74 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~-----~lp~vl~~~~d~~~~vrk~~~~fiee~-----~-- 74 (241)
|++++++..-.-+. .-++.|-.|-=-++..+|.|.|. ++|+++.--.-++..+-|..+..|++. |
T Consensus 2006 ek~lelm~~~~peq---h~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~ 2082 (2235)
T KOG1789|consen 2006 EKVLELMSRPTPEQ---HELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCD 2082 (2235)
T ss_pred HHHHHHhcCCCccc---chhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHH
Confidence 45555554333322 35677777776677889988864 578877331111111113333333331 1
Q ss_pred ---------------hchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHH
Q 026208 75 ---------------LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWM 139 (241)
Q Consensus 75 ---------------~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m 139 (241)
+|.+..+..+.++|..+..-+....+-++..|+ +.|.+|.++ .|+--+.++.+.+.-=+..
T Consensus 2083 AMA~l~~i~~~m~~mkK~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~g--LvpyLL~LL--d~~tL~~~~~~aas~A~Iv 2158 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQPSLMGLAAEALKRLMKRNTGELVAQMLKCG--LVPYLLQLL--DSSTLNGVSNGAAARAEIV 2158 (2235)
T ss_pred HHhccccchhhHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhccC--cHHHHHHHh--ccccccccCchhHHHHHHH
Confidence 344566666666777665543333333444443 556666444 4443333455666666666
Q ss_pred HHHHHHHHH
Q 026208 140 VRFKDAVFA 148 (241)
Q Consensus 140 ~~~K~~Il~ 148 (241)
..+|..|..
T Consensus 2159 ~aLk~~~~~ 2167 (2235)
T KOG1789|consen 2159 DALKSAILD 2167 (2235)
T ss_pred HHHHHHHHH
Confidence 777766665
No 137
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=23.88 E-value=5.9e+02 Score=27.38 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=58.8
Q ss_pred HhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh----hHHHHHHHhhhhhccCC
Q 026208 52 VELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF----FCRVLEEITMQFRWHGK 127 (241)
Q Consensus 52 l~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l----Y~~~l~~~~~~~~~~~~ 127 (241)
+++..+...+..+|+++-+.+ +.--+..+|..+.+.|.+++|.+-+++|++.++. |.-.|..--...+.
T Consensus 16 iD~~~sq~ndt~d~ia~~vv~----~s~tl~dlV~sl~~yl~s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll--- 88 (1030)
T KOG1967|consen 16 IDQNDSQANDTADWIALSVVE----DSTTLLDLVTSLGTYLTSDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLL--- 88 (1030)
T ss_pred hcccccccccHHHHHHHHHHc----CcccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHH---
Confidence 344334556788888877753 3334667777999999999999999999998765 33233221111111
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 026208 128 VERWLEELWTWMVRFKDAVFA 148 (241)
Q Consensus 128 ~~~~~~~~W~~m~~~K~~Il~ 148 (241)
-..++-|+.+...|..+++
T Consensus 89 --~fyq~rldd~~la~~~~l~ 107 (1030)
T KOG1967|consen 89 --QFYQNRLDDSALAKEAVLG 107 (1030)
T ss_pred --HHHHhHHHHhhhhHHHHHH
Confidence 2357889999888888877
No 138
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.81 E-value=1.1e+03 Score=26.54 Aligned_cols=94 Identities=17% Similarity=-0.016 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhc--CCChHHHHHHHHhhhhhhHHHHHHHhhhhh--cc--CC---ccchHHHHHHHHHHHHHHHHHHhc
Q 026208 81 SSILMPVLLAFLR--DGDSGVAGKSIVCGTNFFCRVLEEITMQFR--WH--GK---VERWLEELWTWMVRFKDAVFAIAL 151 (241)
Q Consensus 81 ~~~~v~~L~~LL~--d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~--~~--~~---~~~~~~~~W~~m~~~K~~Il~~~~ 151 (241)
+....+.+..-|+ |.....++.||+-+-.-.+.+=+.+.+--. .. .+ .+....++|..|.++|..+.++-.
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~ 1640 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSA 1640 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3333344444443 444566788888776665555444432100 00 00 124678999999999999988532
Q ss_pred cC-----CCCchHHHHHHHHhHHhhhcc
Q 026208 152 EP-----GLVGTKLLALKFLETHVLLFT 174 (241)
Q Consensus 152 d~-----~n~Gvr~~aiKF~e~vIl~qT 174 (241)
+. .-.+++..|..-=+..=.+|+
T Consensus 1641 ~A~~a~~~a~sa~~~A~~a~q~~~~lq~ 1668 (1758)
T KOG0994|consen 1641 EAKQAEKTAGSAKEQALSAEQGLEILQK 1668 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 224555555544333334443
No 139
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=23.75 E-value=5.8e+02 Score=23.52 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhh--HHHHHHHHHHhhcC-CChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchH
Q 026208 56 SSPESLVRKSLIETIEDIGLKAMEH--SSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWL 132 (241)
Q Consensus 56 ~d~~~~vrk~~~~fiee~~~~~~e~--~~~~v~~L~~LL~d-~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~ 132 (241)
..++.++-.-+..++..+|.-.-|- ..+++ ... .+..+.|-+.+ .+.+|..++..+- ...+....
T Consensus 171 ~~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai------~~~~k~~liAKLa~q-v~~~Y~~a~~~l~-----~~~~~~~~ 238 (346)
T cd09240 171 QEPTPDLSPDTLSALSALMLAQAQEVFYLKAT------RDKMKDAIIAKLAAQ-AADYYGDAFKQCQ-----REDVRSLL 238 (346)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH------hccCchhHHHHHHHH-HHHHHHHHHHHHh-----cchhcccc
Confidence 3456677777888888887655443 22222 112 23445555544 4678999985442 22222345
Q ss_pred HHHHHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhH
Q 026208 133 EELWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLET 168 (241)
Q Consensus 133 ~~~W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~ 168 (241)
...|..+..+|...+.- ..+.+..|..++..|..+.
T Consensus 239 ~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 239 PKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 78899999999887642 2246789999999888766
No 140
>TIGR02277 PaaX_trns_reg phenylacetic acid degradation operon negative regulatory protein PaaX. This transcriptional regulator is always found in association with operons believed to be involved in the degradation of phenylacetic acid. The gene product has been shown to bind to the promoter sites and repress their transcription.
Probab=23.56 E-value=1.4e+02 Score=26.87 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHH
Q 026208 23 AVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGK 102 (241)
Q Consensus 23 ~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~ 102 (241)
..++-...+.|.+++ .||.|.++++|. ..+...-|..+.++..........++..+..+....|...++...+|
T Consensus 204 ~~r~lLvh~~Rr~l~-~DP~LP~elLP~-----dW~G~~Ar~lf~~l~~~L~~~a~~~~~~~~~~~~g~lp~~~~~~~~r 277 (280)
T TIGR02277 204 VARLLLVHEYRRVVL-RDPLLPEELLPA-----DWPGDAARHLCARIYRTLAPPAERFLDSVGATENGPLPKAKELNFLR 277 (280)
T ss_pred HHHHHHHHHHHHHhh-cCCCCChhhCCC-----CCCcHHHHHHHHHHHHHHhHHHHHHHHHHccccCCCCCCCchhHHhh
Confidence 456677778888885 999999999984 45778889999888887777777777766655444444455555543
No 141
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.53 E-value=6e+02 Score=26.66 Aligned_cols=85 Identities=20% Similarity=0.158 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCC--chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh----hchhhhHHHHHHHHHHhhcCCChHHH
Q 026208 27 SSLKQVRGILSSADP--SLAAELFPYLVELQSSPESLVRKSLIETIEDIG----LKAMEHSSILMPVLLAFLRDGDSGVA 100 (241)
Q Consensus 27 ~~L~q~relll~~~p--~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~----~~~~e~~~~~v~~L~~LL~d~d~~V~ 100 (241)
+-|..--+-+.+.++ .+++.++-.+|-+.-.++-.||.-+..+|.-+. -.+..+...+...+..-+.|.-|.|-
T Consensus 64 ~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VR 143 (892)
T KOG2025|consen 64 SFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVR 143 (892)
T ss_pred HHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHH
Confidence 334444444444444 478888888887776778889998888887653 34556777777777777778888888
Q ss_pred HHHHHhhhhhh
Q 026208 101 GKSIVCGTNFF 111 (241)
Q Consensus 101 K~aI~~~t~lY 111 (241)
.+|+.|.+-+-
T Consensus 144 iqAv~aLsrlQ 154 (892)
T KOG2025|consen 144 IQAVLALSRLQ 154 (892)
T ss_pred HHHHHHHHHHh
Confidence 88888876554
No 142
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=23.17 E-value=5.9e+02 Score=23.34 Aligned_cols=134 Identities=17% Similarity=0.220 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHH
Q 026208 27 SSLKQVRGILSSADPSLAAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIV 105 (241)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~lp~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~ 105 (241)
+.+++|...+. -..++|..+.+. ...++.++..-+..++...|.-.-|.+. .-..+.+...+.++=+.-.
T Consensus 130 ~~~k~A~~~fq-----~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~lAqAQe~~----~~ka~~~~~~~~liAKLa~ 200 (377)
T PF03097_consen 130 EGLKEACNYFQ-----RAAGIFQYLRENFKDSPSPDLSPEVLSALSNLMLAQAQECF----YEKAIADKKKPSLIAKLAA 200 (377)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHHHHHHHHHH----HHHHHHTTG-HHHHHHHHH
T ss_pred hhHHHHHHHHH-----HHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHHHHHHHHHH----HHHHHHccCchHHHHHHHH
Confidence 55666666553 124555555444 3445667888888888877765544322 1111112334444333444
Q ss_pred hhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHHhhhcc
Q 026208 106 CGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETHVLLFT 174 (241)
Q Consensus 106 ~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (241)
.+...|..+...+ ............|..+..+|...+.- ..+.+..|.-++.++..+..+-.-.
T Consensus 201 ~~~~~Y~~a~~~l-----~~~~~~~~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~ 273 (377)
T PF03097_consen 201 QASELYDEAHEAL-----QSSPLSESIPKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEAS 273 (377)
T ss_dssp HHHHHHHHHHHHH-----TTCHHHHCSHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 4578999998444 32221223468899999999988542 2357888999988888777655444
No 143
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.09 E-value=5.7e+02 Score=23.99 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=25.7
Q ss_pred CCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHH
Q 026208 39 ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLL 89 (241)
Q Consensus 39 ~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~ 89 (241)
.||.-.-.++-.+++-+-|+..-.||.+.-..|+++..+++.+..++.+..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~ 294 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAAD 294 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence 344333334444444444555555666655556666655555554444443
No 144
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=22.94 E-value=5.4e+02 Score=25.21 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcC--CChHHHHHHH-HHHHHHHhcCCC-chHHhhhHHHHhhcC-CchhhHHHHHHHHHHHHhh-----
Q 026208 6 RDQALSLLAAANNH--GDLAVKLSSL-KQVRGILSSADP-SLAAELFPYLVELQS-SPESLVRKSLIETIEDIGL----- 75 (241)
Q Consensus 6 ~~~v~~lln~A~~~--~d~~~kl~~L-~q~relll~~~p-~ll~~~lp~vl~~~~-d~~~~vrk~~~~fiee~~~----- 75 (241)
.+-++++.+.+.++ ++..+++..+ -..||+++...| +-+..+++.++.... ..+.+++|-+++-+-+...
T Consensus 104 F~~ll~~~f~~~~~~~k~l~e~l~~~yp~LK~la~~~~p~s~~~~~f~~~l~~~~~~~~~~~~~E~~~~li~CLt~d~~c 183 (469)
T PF10151_consen 104 FFPLLRLTFPPSNSLSKALQERLEAIYPRLKELAFAGKPGSTLHTYFPSFLSKATPECPPELKKELISILIWCLTQDPDC 183 (469)
T ss_pred HHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhcCChHH
Confidence 33444555555444 2334566555 677889887766 466678887776653 3456888888886654322
Q ss_pred ------chhhhHHHHHHHHHHhhcC
Q 026208 76 ------KAMEHSSILMPVLLAFLRD 94 (241)
Q Consensus 76 ------~~~e~~~~~v~~L~~LL~d 94 (241)
-+++++...+..|..+.++
T Consensus 184 ~~~Wr~lY~knl~~S~llL~~l~~~ 208 (469)
T PF10151_consen 184 FKVWRQLYKKNLKQSVLLLKHLDDE 208 (469)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 2356666666667666553
No 145
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.71 E-value=1.8e+02 Score=26.63 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=35.1
Q ss_pred hHHHHHH----HHHHHHhh------------chhhhHHHHHHHHHHhhcCCChHHHHHHHH
Q 026208 61 LVRKSLI----ETIEDIGL------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIV 105 (241)
Q Consensus 61 ~vrk~~~----~fiee~~~------------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~ 105 (241)
++|.+++ ++|||=|- +..+.+..+|++.+.=|.|.|..|.|.-|-
T Consensus 93 eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvD 153 (305)
T PF15290_consen 93 ELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVD 153 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhh
Confidence 6777776 68888772 334579999999999999999999987443
No 146
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=21.63 E-value=4.2e+02 Score=21.13 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCCh-HHHHHHHHhh
Q 026208 29 LKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS-GVAGKSIVCG 107 (241)
Q Consensus 29 L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~-~V~K~aI~~~ 107 (241)
|++++.++-.-.|+-++.+..++.....+.+.+..+.++++|-+.+...+.+++.. ..|...+....+ .+....+..+
T Consensus 1 ~r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~-a~l~~~l~~~~~~~f~~~ll~~~ 79 (209)
T PF02854_consen 1 LRKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLY-ARLCAALNSRFPSEFRSLLLNRC 79 (209)
T ss_dssp HHHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHH-HHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CchHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHH-HHHHHHHhccchhhHHHHHHHHH
Confidence 45566666544666666777766655333355667777776666555555444422 233333443333 3444444433
No 147
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=21.54 E-value=1e+02 Score=29.78 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=0.0
Q ss_pred CchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhc
Q 026208 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLR 93 (241)
Q Consensus 41 p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~ 93 (241)
|+|.++-++.-+++..|.+.-+|++.+.=+-..|+- +.++++.++|..||+
T Consensus 56 p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 56 PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLN 106 (460)
T ss_pred chhhhHHHHhhhccccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHH
No 148
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.45 E-value=8.8e+02 Score=24.75 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCchH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhh
Q 026208 29 LKQVRGILSSADPSLA-AELFPYLVELQSSPESLVRKSLIETIEDIGL 75 (241)
Q Consensus 29 L~q~relll~~~p~ll-~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~ 75 (241)
...+-+.+..+.+-.+ ++++|+++-|-.++++++|+|....+.....
T Consensus 102 F~~~f~~~~~~~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~ 149 (727)
T PF12726_consen 102 FDAIFSSLQSKKPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKR 149 (727)
T ss_pred HHHHHHHHhccCCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCC
Confidence 3445555555555444 8999999988889999999999999988643
No 149
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=21.39 E-value=4.7e+02 Score=23.26 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=40.2
Q ss_pred chhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHH
Q 026208 76 KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVF 147 (241)
Q Consensus 76 ~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il 147 (241)
..+.+.+.+++.|..=|....+.|.+.+.++...+.+.-= . ..+.++....|+. +|..|+
T Consensus 201 s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~-~--------~~~~~~~~~iw~~---lk~Eil 260 (262)
T PF14500_consen 201 STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG-A--------DSLSPHWSTIWNA---LKFEIL 260 (262)
T ss_pred CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC-H--------HHHHHHHHHHHHH---HHHHHc
Confidence 4467888999999988888888888777777665544110 0 0133667888876 455554
No 150
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=21.30 E-value=4.5e+02 Score=26.98 Aligned_cols=41 Identities=7% Similarity=0.115 Sum_probs=18.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhH
Q 026208 8 QALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFP 49 (241)
Q Consensus 8 ~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp 49 (241)
+.++.+.+-+.-.+.-.++...+..-+++ ..+|.++.+|.|
T Consensus 227 klv~hf~~n~smknq~a~V~lvr~~~~ll-~~n~q~~~q~rp 267 (898)
T COG5240 227 KLVEHFRGNASMKNQLAGVLLVRATVELL-KENSQALLQLRP 267 (898)
T ss_pred HHHHHhhcccccccchhheehHHHHHHHH-HhChHHHHHHHH
Confidence 33444444333333334444555555544 355555555555
No 151
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=21.12 E-value=1.7e+02 Score=23.85 Aligned_cols=40 Identities=10% Similarity=0.033 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhh
Q 026208 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITM 120 (241)
Q Consensus 81 ~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~ 120 (241)
-..+-+.+..++.+.+..-..+++.+.+.+||...+..+.
T Consensus 41 ~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 41 KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 3344445555566655557789999999999999977754
No 152
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=20.88 E-value=1.5e+02 Score=18.80 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhh
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELF 48 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l 48 (241)
+..+.+|+.=....- .+-+...++.+|+ .++|+|+.+|-
T Consensus 5 ~~FL~il~~y~~~~~--~~~~v~~~v~~Ll-~~hpdLl~~F~ 43 (47)
T PF02671_consen 5 NEFLKILNDYKKGRI--SRSEVIEEVSELL-RGHPDLLEEFN 43 (47)
T ss_dssp HHHHHHHHHHHCTCS--CHHHHHHHHHHHT-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHH-ccCHHHHHHHH
Confidence 445666666665422 2444666677755 68888876664
No 153
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=20.81 E-value=4.5e+02 Score=25.73 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhc
Q 026208 59 ESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLR 93 (241)
Q Consensus 59 ~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~ 93 (241)
..+|||-+.+++-.+|+.+|.++...-.-|...+.
T Consensus 281 ~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g 315 (459)
T PF14764_consen 281 QAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLG 315 (459)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhc
Confidence 45999999999999999999887766656655554
No 154
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=20.20 E-value=5.7e+02 Score=22.08 Aligned_cols=141 Identities=15% Similarity=0.093 Sum_probs=89.2
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHH
Q 026208 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLA 90 (241)
Q Consensus 11 ~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~ 90 (241)
.|+..+....+..-+...|+-+-++.-+++ ...+-++.-+..+...+..+++-+....+....++.+-+.+.+-+.+..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~ 82 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLL 82 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 345555566777789999999999998887 6677777777677666666666666666666666655443332222222
Q ss_pred h-hc-----CCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Q 026208 91 F-LR-----DGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALK 164 (241)
Q Consensus 91 L-L~-----d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiK 164 (241)
+ ++ -++..-...-|.+++++.+.+- . ..+.|.-|...=+.+++ ++.++.++-.|+.
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~-----~----------~p~~g~~ll~~ls~~L~---~~~~~~~~alale 144 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICC-----S----------RPDHGVDLLPLLSGCLN---QSCDEVAQALALE 144 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHH-----h----------ChhhHHHHHHHHHHHHh---ccccHHHHHHHHH
Confidence 1 11 0122223333444455544333 2 23388888888788876 6788889999998
Q ss_pred HHhHHh
Q 026208 165 FLETHV 170 (241)
Q Consensus 165 F~e~vI 170 (241)
++..+-
T Consensus 145 ~l~~Lc 150 (234)
T PF12530_consen 145 ALAPLC 150 (234)
T ss_pred HHHHHH
Confidence 887665
No 155
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=20.14 E-value=7.7e+02 Score=23.55 Aligned_cols=141 Identities=10% Similarity=-0.028 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHH
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMP 86 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~ 86 (241)
+..+++|-.|....+..+... ..+.-+....+| ..++.+++.-.|.+..||.-+++-+.++. .+.+.+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~--~aa~al~~~~~~----~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------~~~a~~ 120 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVA--CAALALLAQEDA----LDLRSVLAVLQAGPEGLCAGIQAALGWLG------GRQAEP 120 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHH--HHHHHHhccCCh----HHHHHHHHHhcCCCHHHHHHHHHHHhcCC------chHHHH
Confidence 345666766664422223322 233333322333 22555555555777778888888776542 223344
Q ss_pred HHHHhhcCCChHHHHHHHHhhhhh----hHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHH-----HHHHhccCCCCc
Q 026208 87 VLLAFLRDGDSGVAGKSIVCGTNF----FCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDA-----VFAIALEPGLVG 157 (241)
Q Consensus 87 ~L~~LL~d~d~~V~K~aI~~~t~l----Y~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~-----Il~~~~d~~n~G 157 (241)
.|..+|.+++|.|..-++.+.+.. |+.+. ..+. +....--.+....+..+|.. +.. ..++.+..
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~-----~~L~-d~d~~Vra~A~raLG~l~~~~a~~~L~~-al~d~~~~ 193 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRHDPGPALE-----AALT-HEDALVRAAALRALGELPRRLSESTLRL-YLRDSDPE 193 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChHHHHH-----HHhc-CCCHHHHHHHHHHHHhhccccchHHHHH-HHcCCCHH
Confidence 677778899998877777555544 55444 3332 21112336677777776644 334 66889999
Q ss_pred hHHHHHHHH
Q 026208 158 TKLLALKFL 166 (241)
Q Consensus 158 vr~~aiKF~ 166 (241)
||-.|+-=+
T Consensus 194 VR~aA~~al 202 (410)
T TIGR02270 194 VRFAALEAG 202 (410)
T ss_pred HHHHHHHHH
Confidence 998888443
No 156
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.02 E-value=5.2e+02 Score=28.09 Aligned_cols=137 Identities=13% Similarity=0.073 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCCchHHhhhHHHH----hhcCCchhhHHHH------HHHHHHHHhhchhhhHHHHHHHHHHhhcCCC---
Q 026208 30 KQVRGILSSADPSLAAELFPYLV----ELQSSPESLVRKS------LIETIEDIGLKAMEHSSILMPVLLAFLRDGD--- 96 (241)
Q Consensus 30 ~q~relll~~~p~ll~~~lp~vl----~~~~d~~~~vrk~------~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d--- 96 (241)
+++|-|..-.+--.++.|.-++. +++ ....+.|++ .|+.-.|++.++.+..-.-+..+..|...+.
T Consensus 444 ~~~r~L~~i~~s~k~~~F~r~~~~kyl~l~-n~~m~~r~q~qi~s~~a~myre~g~~rkqaf~~rlsv~~~L~~T~~~~~ 522 (1235)
T KOG1953|consen 444 AMARMLGSIGFSRKRVKFLRELVSKYLSLT-NVLMETRRQNQIKSTMAGMYREVGASRKQAFFKRLSVCNILPLTSEICQ 522 (1235)
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhc
Confidence 34444443344334555555543 322 223344444 4466777887777765554545554543332
Q ss_pred -hHHHHHHHHhhhhhhHHHHHHHhhhhhccCC--ccchHHHHHHHHHHHHHHHHHHhcc-CCCCchHHHHHHHHhHHhhh
Q 026208 97 -SGVAGKSIVCGTNFFCRVLEEITMQFRWHGK--VERWLEELWTWMVRFKDAVFAIALE-PGLVGTKLLALKFLETHVLL 172 (241)
Q Consensus 97 -~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~--~~~~~~~~W~~m~~~K~~Il~~~~d-~~n~Gvr~~aiKF~e~vIl~ 172 (241)
+.-+|- .|+.++.++-. |-.-.+ ++.-.+++|.. .++ .||+..+. ....|=+-+++||+..+++.
T Consensus 523 ~~~dyKt-------~~~~l~~lLe~-~g~e~~~~~d~~sq~~w~~-LQ~--kvL~eii~~a~ragd~~aa~~~~s~Ll~~ 591 (1235)
T KOG1953|consen 523 EYGDYKT-------DGSLLNPLLEK-WGSEAKINVDDPSQSTWSN-LQF--KVLNEIISLADRAGDYRAALLLISLLLLT 591 (1235)
T ss_pred cCccccc-------cHHHHHHHHHh-ccccccCCcCccccccchh-hHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 233343 56666655543 321122 66778999998 344 45554333 46678899999999999999
Q ss_pred ccCCCC
Q 026208 173 FTSDSN 178 (241)
Q Consensus 173 qT~~~~ 178 (241)
++|-.+
T Consensus 592 yypll~ 597 (1235)
T KOG1953|consen 592 YYPLLS 597 (1235)
T ss_pred hhhccC
Confidence 997643
Done!