Query 026208
Match_columns 241
No_of_seqs 116 out of 163
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:07:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gs3_A Symplekin, LD45768P; he 100.0 4.6E-65 1.6E-69 450.9 20.9 226 3-241 11-237 (257)
2 3o2t_A Symplekin; heat repeat, 100.0 8.3E-64 2.8E-68 464.3 20.5 230 2-241 20-250 (386)
3 2vgl_B AP-2 complex subunit be 97.0 0.0084 2.9E-07 57.3 12.9 92 17-111 95-188 (591)
4 2qk2_A LP04448P; mini spindles 96.7 0.041 1.4E-06 45.9 13.5 106 7-115 97-208 (242)
5 2qk1_A Protein STU2; STU2P, XM 96.4 0.065 2.2E-06 45.7 13.3 186 16-227 24-225 (249)
6 2vgl_B AP-2 complex subunit be 96.4 0.11 3.7E-06 49.5 16.0 135 13-169 18-187 (591)
7 3ltm_A Alpha-REP4; protein eng 96.3 0.12 4.2E-06 41.6 14.1 144 10-169 21-170 (211)
8 1oyz_A Hypothetical protein YI 96.2 0.29 1E-05 41.1 16.3 111 56-169 101-219 (280)
9 1b3u_A Protein (protein phosph 96.1 0.055 1.9E-06 49.8 12.1 68 44-111 162-231 (588)
10 3ltj_A Alpharep-4; protein eng 95.9 0.1 3.5E-06 41.7 11.5 144 10-169 47-196 (201)
11 2qk1_A Protein STU2; STU2P, XM 95.9 0.16 5.3E-06 43.3 13.2 72 44-115 144-223 (249)
12 1b3u_A Protein (protein phosph 95.9 0.15 5.1E-06 46.9 13.9 148 6-173 162-312 (588)
13 2qk2_A LP04448P; mini spindles 95.9 0.15 5.1E-06 42.4 12.7 176 17-226 24-209 (242)
14 4fdd_A Transportin-1; heat rep 95.8 0.12 4.2E-06 50.8 13.6 141 11-169 131-283 (852)
15 3u0r_A Apoptosis inhibitor 5; 95.7 0.044 1.5E-06 52.0 9.7 114 58-173 40-165 (507)
16 4db6_A Armadillo repeat protei 95.6 0.66 2.3E-05 36.8 15.6 139 11-169 57-207 (210)
17 2db0_A 253AA long hypothetical 95.6 0.072 2.5E-06 45.1 9.4 101 9-110 108-208 (253)
18 3ltm_A Alpha-REP4; protein eng 95.4 0.3 1E-05 39.2 12.7 140 13-168 55-200 (211)
19 4fdd_A Transportin-1; heat rep 95.4 0.18 6.2E-06 49.6 13.2 107 5-111 87-202 (852)
20 4hxt_A De novo protein OR329; 95.2 0.99 3.4E-05 36.4 15.5 141 10-170 46-198 (252)
21 3ltj_A Alpharep-4; protein eng 95.1 0.25 8.5E-06 39.4 11.2 136 18-169 24-165 (201)
22 4hxt_A De novo protein OR329; 95.0 1.2 4E-05 36.0 16.6 144 10-174 88-244 (252)
23 1te4_A Conserved protein MTH18 94.8 0.15 5E-06 38.5 8.5 25 86-110 76-100 (131)
24 1w63_A Adapter-related protein 94.6 0.13 4.4E-06 49.4 9.4 133 13-169 39-206 (618)
25 2vgl_A Adaptor protein complex 94.6 0.11 3.9E-06 50.0 9.1 97 11-110 114-214 (621)
26 4db8_A Armadillo-repeat protei 94.6 0.66 2.2E-05 37.9 12.6 139 10-168 98-248 (252)
27 2jdq_A Importin alpha-1 subuni 94.4 0.98 3.4E-05 39.9 14.3 139 16-171 242-390 (450)
28 2jdq_A Importin alpha-1 subuni 94.3 0.29 1E-05 43.4 10.5 94 18-111 30-135 (450)
29 1ibr_B P95, importin beta-1 su 94.2 0.23 7.9E-06 44.1 9.6 114 44-173 126-248 (462)
30 1u6g_C TIP120 protein, CAND1; 94.2 0.86 2.9E-05 46.6 15.1 154 6-171 5-163 (1230)
31 1oyz_A Hypothetical protein YI 94.1 0.34 1.2E-05 40.7 9.9 106 6-118 88-197 (280)
32 3tjz_B Coatomer subunit gamma; 94.0 0.37 1.3E-05 43.7 10.7 123 39-166 132-274 (355)
33 1w63_A Adapter-related protein 93.7 0.098 3.4E-06 50.2 6.5 99 10-111 109-207 (618)
34 1u6g_C TIP120 protein, CAND1; 93.6 3.6 0.00012 42.0 18.3 163 7-172 85-285 (1230)
35 3tpo_A Importin subunit alpha- 93.6 0.83 2.8E-05 42.5 12.5 95 16-110 84-189 (529)
36 1ibr_B P95, importin beta-1 su 93.5 1.6 5.4E-05 38.6 13.7 145 10-172 130-289 (462)
37 3tjz_B Coatomer subunit gamma; 93.4 1.8 6.1E-05 39.2 14.0 104 19-123 37-178 (355)
38 1te4_A Conserved protein MTH18 93.4 0.38 1.3E-05 36.1 8.2 59 45-110 11-69 (131)
39 3ul1_B Importin subunit alpha- 93.2 1.1 3.7E-05 41.7 12.5 95 16-110 65-170 (510)
40 2bpt_A Importin beta-1 subunit 93.1 1.7 6E-05 41.8 14.3 78 33-110 120-208 (861)
41 2bpt_A Importin beta-1 subunit 93.1 3.9 0.00013 39.3 16.8 146 9-172 135-296 (861)
42 1qgr_A Protein (importin beta 92.6 0.68 2.3E-05 44.8 10.6 111 45-171 127-246 (876)
43 4db6_A Armadillo repeat protei 92.6 3.1 0.00011 32.8 15.7 138 13-170 17-166 (210)
44 4db8_A Armadillo-repeat protei 92.5 0.83 2.8E-05 37.3 9.7 102 9-111 139-250 (252)
45 4b8j_A Importin subunit alpha- 92.2 1.5 5E-05 40.3 11.9 95 17-111 83-188 (528)
46 1wa5_B Importin alpha subunit; 92.1 4.8 0.00017 36.9 15.5 93 19-111 226-327 (530)
47 4b8j_A Importin subunit alpha- 92.0 3.4 0.00012 37.8 14.2 141 21-170 342-495 (528)
48 2vgl_A Adaptor protein complex 91.8 1.1 3.9E-05 43.0 11.0 128 20-169 50-214 (621)
49 1wa5_B Importin alpha subunit; 91.1 1.7 5.9E-05 40.0 11.1 95 17-111 96-201 (530)
50 1qgr_A Protein (importin beta 90.6 2.2 7.4E-05 41.2 11.7 105 7-112 365-479 (876)
51 3b2a_A TON_1937, putative unch 87.4 13 0.00046 32.1 13.0 119 45-168 32-176 (265)
52 3ul1_B Importin subunit alpha- 86.4 8.3 0.00028 35.6 12.3 113 45-170 357-477 (510)
53 3u0r_A Apoptosis inhibitor 5; 86.3 4.4 0.00015 38.4 10.2 73 38-112 57-129 (507)
54 1xqr_A HSPBP1 protein; armadil 85.4 5.1 0.00018 34.9 9.8 94 20-113 137-239 (296)
55 3tpo_A Importin subunit alpha- 85.0 12 0.0004 34.6 12.7 94 18-111 303-405 (529)
56 1xqr_A HSPBP1 protein; armadil 85.0 2.3 7.7E-05 37.2 7.2 150 22-172 54-239 (296)
57 4ady_A RPN2, 26S proteasome re 84.8 4.9 0.00017 41.1 10.4 97 8-111 577-675 (963)
58 4ffb_C Protein STU2; tubulin f 84.5 7.9 0.00027 32.6 10.4 70 45-114 138-214 (278)
59 4atg_A TAF6; transcription, TF 83.8 12 0.00041 31.0 10.8 112 20-143 58-184 (196)
60 2db0_A 253AA long hypothetical 81.9 15 0.00051 31.0 10.5 89 19-109 155-243 (253)
61 1xm9_A Plakophilin 1; armadill 81.4 16 0.00055 33.2 11.8 100 7-110 5-114 (457)
62 2of3_A ZYG-9; multifunctional 78.5 5.4 0.00019 34.6 7.1 30 86-115 210-239 (266)
63 3b2a_A TON_1937, putative unch 77.2 10 0.00035 32.9 8.3 73 5-77 147-220 (265)
64 2z6h_A Catenin beta-1, beta-ca 71.5 30 0.001 32.6 11.0 101 7-111 17-126 (644)
65 1jdh_A Beta-catenin; beta-cate 66.7 36 0.0012 30.4 10.1 89 20-108 72-168 (529)
66 2z6h_A Catenin beta-1, beta-ca 65.1 31 0.0011 32.4 9.7 90 20-109 69-166 (644)
67 1jdh_A Beta-catenin; beta-cate 65.0 66 0.0023 28.6 11.5 87 24-110 243-337 (529)
68 2z6g_A B-catenin; FULL-length, 63.9 27 0.00094 34.1 9.2 93 19-111 161-262 (780)
69 3l9t_A Putative uncharacterize 63.5 59 0.002 27.7 10.1 60 45-107 102-163 (240)
70 1wa5_C Importin alpha RE-expor 62.0 80 0.0027 31.3 12.4 102 5-113 3-115 (960)
71 2z6g_A B-catenin; FULL-length, 60.6 18 0.00061 35.4 7.2 70 41-110 145-220 (780)
72 3l9t_A Putative uncharacterize 59.7 64 0.0022 27.5 9.6 111 7-123 89-221 (240)
73 2x19_B Importin-13; nuclear tr 59.0 1.4E+02 0.0047 29.2 13.4 105 4-113 21-133 (963)
74 3nmw_A APC variant protein; AR 53.2 30 0.001 30.6 6.9 66 46-111 263-333 (354)
75 3now_A UNC-45 protein, SD10334 52.3 71 0.0024 31.9 10.0 175 21-225 594-785 (810)
76 3tt9_A Plakophilin-2; cell adh 51.9 38 0.0013 28.3 7.0 64 47-110 9-79 (233)
77 1xm9_A Plakophilin 1; armadill 49.5 24 0.00081 32.0 5.7 64 48-111 4-72 (457)
78 3opb_A SWI5-dependent HO expre 47.5 2.2E+02 0.0077 28.2 12.8 132 24-173 575-730 (778)
79 3now_A UNC-45 protein, SD10334 45.8 70 0.0024 31.9 8.7 66 46-111 665-736 (810)
80 3l6x_A Catenin delta-1; cateni 45.5 40 0.0014 32.3 6.8 72 40-111 42-118 (584)
81 4ady_A RPN2, 26S proteasome re 44.6 1.5E+02 0.005 30.3 10.9 102 3-111 467-570 (963)
82 3nmz_A APC variant protein; pr 44.5 48 0.0016 30.6 7.0 66 45-110 378-448 (458)
83 2npp_B PP2A, B subunit, serine 41.9 2.1E+02 0.0072 26.5 10.8 79 27-107 265-350 (449)
84 2of3_A ZYG-9; multifunctional 39.1 1.7E+02 0.0058 25.0 9.2 75 4-79 163-240 (266)
85 3tt9_A Plakophilin-2; cell adh 39.0 1.7E+02 0.0057 24.3 10.0 96 6-105 10-117 (233)
86 3m1i_C Exportin-1; heat repeat 34.5 66 0.0023 32.3 6.6 70 43-112 492-569 (1049)
87 2h80_A STAR-related lipid tran 34.3 15 0.0005 26.1 1.2 25 191-215 46-70 (81)
88 3nmw_A APC variant protein; AR 32.7 93 0.0032 27.4 6.7 52 59-110 97-154 (354)
89 3qml_C Protein SLS1, nucleotid 31.5 65 0.0022 28.6 5.3 137 33-174 105-247 (315)
90 4gmo_A Putative uncharacterize 30.3 66 0.0023 30.9 5.6 63 46-110 35-103 (684)
91 1vh6_A Flagellar protein FLIS; 29.6 1.9E+02 0.0064 22.4 7.2 31 7-37 31-64 (145)
92 2x1g_F Cadmus; transport prote 29.4 2.5E+02 0.0084 27.5 9.7 67 42-111 501-571 (971)
93 3c3r_A Programmed cell death 6 29.2 3E+02 0.01 24.4 9.5 102 56-170 194-305 (380)
94 2x1g_F Cadmus; transport prote 26.8 93 0.0032 30.6 6.1 106 1-113 1-115 (971)
95 2dky_A RHO-GTPase-activating p 26.7 15 0.00052 26.5 0.3 25 191-215 48-72 (91)
96 4ffb_C Protein STU2; tubulin f 24.4 2.9E+02 0.0099 22.5 16.7 152 15-169 16-210 (278)
97 2rg8_A Programmed cell death p 24.1 2.6E+02 0.0088 21.8 7.9 64 6-75 10-73 (165)
98 4hat_C Exportin-1; heat repeat 23.8 84 0.0029 32.0 5.2 69 43-111 492-568 (1023)
99 2f4m_B UV excision repair prot 23.2 55 0.0019 21.9 2.5 23 28-51 12-34 (61)
100 1ho8_A Vacuolar ATP synthase s 22.1 2.5E+02 0.0087 26.2 7.7 37 132-170 439-475 (480)
101 2jak_A Serine/threonine-protei 21.9 4.1E+02 0.014 24.1 8.9 81 27-109 277-364 (392)
102 3m1i_C Exportin-1; heat repeat 21.7 1.6E+02 0.0055 29.5 6.8 59 39-97 533-603 (1049)
103 2x19_B Importin-13; nuclear tr 20.9 3E+02 0.01 26.8 8.4 54 58-111 785-845 (963)
104 1pve_A HHR23B, UV excision rep 20.6 40 0.0014 23.4 1.5 23 28-51 14-36 (72)
No 1
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=100.00 E-value=4.6e-65 Score=450.92 Aligned_cols=226 Identities=19% Similarity=0.265 Sum_probs=209.0
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH
Q 026208 3 AVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS 82 (241)
Q Consensus 3 ~~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~ 82 (241)
+++++||++|||+|+.++| ++|+++|+||||+++++||+++|+|||++++|++|++.+||||+++||||+|++++++++
T Consensus 11 ~~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~ 89 (257)
T 3gs3_A 11 ATARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP 89 (257)
T ss_dssp HHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred ccHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999988 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCC-ccchHHHHHHHHHHHHHHHHHHhccCCCCchHHH
Q 026208 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK-VERWLEELWTWMVRFKDAVFAIALEPGLVGTKLL 161 (241)
Q Consensus 83 ~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~-~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~ 161 (241)
+++++|.+|++|+|+.|+|++|+|++++||.+| +|++.++ ++++++++|++|+++|++|++ +|+++|+|||++
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l-----~~i~~~~~~~~~~~~~W~~m~~lK~~Il~-~~~s~n~gvkl~ 163 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGL-----QYLCSLMEPGDSAEQAWNILSLIKAQILD-MIDNENDGIRTN 163 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH-----HHHTTSSSCCHHHHHHHHHHHHHHHHHHH-GGGSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-----HHHhcCCCCcchHHHHHHHHHHHHHHHHH-HHccCCcchHHH
Confidence 999999999999999999999999999999999 5555454 667899999999999999999 799999999999
Q ss_pred HHHHHhHHhhhccCCCCCcccccccCCCccccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCCceEEEEecC
Q 026208 162 ALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVNW 241 (241)
Q Consensus 162 aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~L~~~~Le~Ea~~lLd~LL~~l~~~~~~~~~~~i~~in~ 241 (241)
|+||+|+||++||++.++ .+++++ ||||++||+|||+|++++||+||+++||+||+++. .+.++++++++++||
T Consensus 164 ~iKF~e~vIl~qT~~~~~--~~~~~~---d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~-~~~iss~~l~a~lns 237 (257)
T 3gs3_A 164 AIKFLEGVVVLQSFADED--SLKRDG---DFSLADVPDHCTLFRREKLQEEGNNILDILLQFHG-TTHISSVNLIACTSS 237 (257)
T ss_dssp HHHHHHHHHHHTSCCCTT--SCCCTT---CCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHT-CTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcc--cCCCCC---CCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHc-CCccchHHHHHHHHH
Confidence 999999999999976544 344443 99999999999999999999999999999999855 566788788888886
No 2
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=100.00 E-value=8.3e-64 Score=464.32 Aligned_cols=230 Identities=20% Similarity=0.308 Sum_probs=212.7
Q ss_pred ccchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH
Q 026208 2 AAVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS 81 (241)
Q Consensus 2 ~~~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~ 81 (241)
.++++|||++|||+|+.+++. +|+++|+|+||+++++||+++++|||++++|++|++.+||||+++||||+|++++|++
T Consensus 20 ~~~~~~~v~~lln~A~~~~~~-~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~ 98 (386)
T 3o2t_A 20 HMTTSERVVDLLNQAALITND-SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL 98 (386)
T ss_dssp -CCHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccHHHHHHHHHHhhhccChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999998764 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCC-ccchHHHHHHHHHHHHHHHHHHhccCCCCchHH
Q 026208 82 SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGK-VERWLEELWTWMVRFKDAVFAIALEPGLVGTKL 160 (241)
Q Consensus 82 ~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~-~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~ 160 (241)
+.++++|.+||+|+|+.|+|++|+|++++||.+| +|+++++ .+++++++|++|++||++|++ +|+++|+|||+
T Consensus 99 ~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f-----~~i~~~~~~~~~~e~~W~~m~~lK~~Il~-~~ds~n~GVrl 172 (386)
T 3o2t_A 99 LKLIANLNMLLRDENVNVVKKAILTMTQLYKVAL-----QWMVKSRVISELQEACWDMVSAMAGDIIL-LLDSDNDGIRT 172 (386)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-----HHHHHC-CCCHHHHHHHHHHHHHHHHHHH-GGGCSSHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-----HHHhcCCCcchhHHHHHHHHHHHHHHHHH-HhccCCcchHH
Confidence 9999999999999999999999999999999999 6666665 456789999999999999999 78999999999
Q ss_pred HHHHHHhHHhhhccCCCCCcccccccCCCccccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCCceEEEEec
Q 026208 161 LALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLDPVSLTSEANRMLGTLMDLLQSACNLPGSVIITVVN 240 (241)
Q Consensus 161 ~aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~L~~~~Le~Ea~~lLd~LL~~l~~~~~~~~~~~i~~in 240 (241)
+|+||+|+||++||++++|++.|++.+ +||||++||+|||+|++++||+||+++||+||+++++ +.++++++++++|
T Consensus 173 ~aiKFle~VIl~qS~~~~d~~~p~~~~--~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~-~~iss~~l~a~ln 249 (386)
T 3o2t_A 173 HAIKFVEGLIVTLSPRMADSEIPRRQE--HDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVH-PAISSINLTTALG 249 (386)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCCCGGGT--TSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccccccC--CCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcc-cccccHHHHHHHH
Confidence 999999999999999988888777654 6999999999999999999999999999999999996 5566678888888
Q ss_pred C
Q 026208 241 W 241 (241)
Q Consensus 241 ~ 241 (241)
|
T Consensus 250 s 250 (386)
T 3o2t_A 250 S 250 (386)
T ss_dssp H
T ss_pred H
Confidence 6
No 3
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.96 E-value=0.0084 Score=57.26 Aligned_cols=92 Identities=11% Similarity=0.087 Sum_probs=72.3
Q ss_pred hcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHH--HHHHHHHHhhcC
Q 026208 17 NNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSS--ILMPVLLAFLRD 94 (241)
Q Consensus 17 ~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~--~~v~~L~~LL~d 94 (241)
...+|...+... ++.+.--..|.+.+.++|.+...-.|+++.|||-.+--+..++...++.+. ..++.|..+|.|
T Consensus 95 L~~~n~~ir~~A---L~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d 171 (591)
T 2vgl_B 95 CEDPNPLIRALA---VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIAD 171 (591)
T ss_dssp SSSSSHHHHHHH---HHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC
T ss_pred cCCCCHHHHHHH---HHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCC
Confidence 344553333333 444443357888888999898888899999999999999999988888776 588999999999
Q ss_pred CChHHHHHHHHhhhhhh
Q 026208 95 GDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 95 ~d~~V~K~aI~~~t~lY 111 (241)
+|+.|...|+.+.+.+.
T Consensus 172 ~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 172 SNPMVVANAVAALSEIS 188 (591)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHH
Confidence 99999999999887764
No 4
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.66 E-value=0.041 Score=45.89 Aligned_cols=106 Identities=14% Similarity=0.049 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch------hhh
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA------MEH 80 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~------~e~ 80 (241)
+.++..|-+....++...+-.....+.+++..-. ++.++|.++..-.++++.+|..++++|..+.... ..+
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~ 173 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence 3444455555444554455555666666654222 4788888887656778899999999999864331 347
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHH
Q 026208 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (241)
Q Consensus 81 ~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l 115 (241)
++.+++.|..+|+|.++.|-+.|+.|++.++..+=
T Consensus 174 l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 174 LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 88999999999999999999999999999998764
No 5
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.065 Score=45.74 Aligned_cols=186 Identities=8% Similarity=0.047 Sum_probs=117.4
Q ss_pred hhcCCChHHHHHHHHHHHH-HHhcCCCchH------HhhhHHHHhhc-CCchhhHHHHHHHHHHHHhhc----h-h-hhH
Q 026208 16 ANNHGDLAVKLSSLKQVRG-ILSSADPSLA------AELFPYLVELQ-SSPESLVRKSLIETIEDIGLK----A-M-EHS 81 (241)
Q Consensus 16 A~~~~d~~~kl~~L~q~re-lll~~~p~ll------~~~lp~vl~~~-~d~~~~vrk~~~~fiee~~~~----~-~-e~~ 81 (241)
...+++-.++.+.|..+.. ++. +.|.+. .++++.+...- .|.+..||.-.+..++.++.. . . .|.
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~-~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLS-QTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGG-GCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHHHHh-cCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 3345777788899999998 773 444332 46666666554 688888988888888776642 2 2 588
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHH
Q 026208 82 SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLL 161 (241)
Q Consensus 82 ~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~ 161 (241)
..+++.+...+.|..+.|...+..|+-.++..+= . .. +..+.+..++ .++. .+++.|..+|..
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~-----~-~~---~~~~l~~ll~-------~l~~-~l~~k~~~vk~~ 165 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYD-----P-LA---SSGRNEDMLK-------DILE-HMKHKTPQIRME 165 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSC-----T-TC---TTCTTHHHHH-------HHHH-HTTCSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcc-----c-cc---cCCcHHHHHH-------HHHH-HHcCCChHHHHH
Confidence 8899999999999998888777777666665320 0 00 0011344444 4455 668889999999
Q ss_pred HHHHHhHHhhhccCCCCCcccccccCCCccccccccCCCCCCCC--hhhHHHHHHHHHHHHHHHHhhh
Q 026208 162 ALKFLETHVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFLD--PVSLTSEANRMLGTLMDLLQSA 227 (241)
Q Consensus 162 aiKF~e~vIl~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~L~--~~~Le~Ea~~lLd~LL~~l~~~ 227 (241)
+++|+-+++-..... |..-.. .++=..+|.--++++ ...+.+.|...+..+...+.+.
T Consensus 166 al~~l~~~~~~~~~~---~~~l~~-----~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 166 CTQLFNASMKEEKDG---YSTLQR-----YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHHHHHHHHCCSC---SHHHHH-----HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHcCCc---chhHHH-----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 999999998653211 000000 000012333222331 5668888888888887777643
No 6
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.37 E-value=0.11 Score=49.53 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=85.9
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchh--------------
Q 026208 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM-------------- 78 (241)
Q Consensus 13 ln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~-------------- 78 (241)
|.+....+|..+|.+.++++--+...+++ .+.+++.++.+-.+++.++||-+--++...+...+
T Consensus 18 i~~~L~~~~~~~k~~~~~kli~~~~~G~d--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL 95 (591)
T 2vgl_B 18 LKAELNNEKKEKRKEAVKKVIAAMTVGKD--VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDC 95 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHTTCC--CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHc
Confidence 44445557777899988888776654443 25667788888778888999888766665443222
Q ss_pred ---------------------hhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHH
Q 026208 79 ---------------------EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWT 137 (241)
Q Consensus 79 ---------------------e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~ 137 (241)
++...+++.+..++.|.+|.|-|.|+.|.+.+|+..- + .|.
T Consensus 96 ~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p--------------~----~~~ 157 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA--------------Q----MVE 157 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC--------------C----CHH
T ss_pred CCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh--------------h----hcc
Confidence 3445555556666666667777777776666665100 1 111
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHhHH
Q 026208 138 WMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 138 ~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (241)
. ..+-..+.. ++++.+.+|+.+|+..+..+
T Consensus 158 ~-~~~~~~l~~-lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 158 D-QGFLDSLRD-LIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp H-HHHHHHHHH-TTSCSCHHHHHHHHHHHHHH
T ss_pred c-ccHHHHHHH-HhCCCChhHHHHHHHHHHHH
Confidence 0 123345555 66777789999999888774
No 7
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.33 E-value=0.12 Score=41.56 Aligned_cols=144 Identities=13% Similarity=0.045 Sum_probs=78.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHH
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLL 89 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~ 89 (241)
+..|-+....+|...+...+..+.++ .++ +.+|.+++.-.|++..+|...+..+..++. + ..++.|.
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~---~~~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~----~~~~~L~ 87 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKI---GDE----RAVEPLIKALKDEDAWVRRAAADALGQIGD--E----RAVEPLI 87 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH---CCG----GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G----GGHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh---CCc----cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----HHHHHHH
Confidence 34444444456655565555554443 333 555666666567788899999888877653 2 3445666
Q ss_pred HhhcCCChHHHHHHHHhhhhhhHH-HHHHHhhhhhccCCccchHHHHHHHHHHHH-----HHHHHHhccCCCCchHHHHH
Q 026208 90 AFLRDGDSGVAGKSIVCGTNFFCR-VLEEITMQFRWHGKVERWLEELWTWMVRFK-----DAVFAIALEPGLVGTKLLAL 163 (241)
Q Consensus 90 ~LL~d~d~~V~K~aI~~~t~lY~~-~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K-----~~Il~~~~d~~n~Gvr~~ai 163 (241)
.+|.|+++.|...++.+.+.+-.. ++..+. +.+ ......--...-..+..+. ..+.. ++++.+..||..++
T Consensus 88 ~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~a~ 164 (211)
T 3ltm_A 88 KALKDEDGWVRQSAAVALGQIGDERAVEPLI-KAL-KDEDWFVRIAAAFALGEIGDERAVEPLIK-ALKDEDGWVRQSAA 164 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCGGGHHHHH-HHT-TCSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTCSSHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCcHHHHHHHH-HHH-hCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHcCCCHHHHHHHH
Confidence 777888888888888887664221 111111 222 1110011122222222222 23344 44666677787777
Q ss_pred HHHhHH
Q 026208 164 KFLETH 169 (241)
Q Consensus 164 KF~e~v 169 (241)
.-+.++
T Consensus 165 ~aL~~~ 170 (211)
T 3ltm_A 165 DALGEI 170 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766554
No 8
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.20 E-value=0.29 Score=41.08 Aligned_cols=111 Identities=12% Similarity=-0.050 Sum_probs=65.1
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHH-HHHHHhhhhhccCCccchHHH
Q 026208 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR-VLEEITMQFRWHGKVERWLEE 134 (241)
Q Consensus 56 ~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~-~l~~~~~~~~~~~~~~~~~~~ 134 (241)
.|++..||...+.-+..++...+.+...+++.|..+++|+++.|...++.+.+.+-.. ++..+. +.+.... ..--..
T Consensus 101 ~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~-~~l~d~~-~~vr~~ 178 (280)
T 1oyz_A 101 NDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLI-NLLKDPN-GDVRNW 178 (280)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHH-HHHTCSS-HHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHcCCC-HHHHHH
Confidence 4677788888888888887666666667778888888888888888888888765332 111111 1111110 001112
Q ss_pred HHHHHHHHH-------HHHHHHhccCCCCchHHHHHHHHhHH
Q 026208 135 LWTWMVRFK-------DAVFAIALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 135 ~W~~m~~~K-------~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (241)
....+..+. ..++. ++.+.+..||..|+..+..+
T Consensus 179 a~~aL~~~~~~~~~~~~~L~~-~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 179 AAFAININKYDNSDIRDCFVE-MLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HHHHHHHHTCCCHHHHHHHHH-HTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccCcHHHHHHHHH-HhcCCCHHHHHHHHHHHHHh
Confidence 222233332 33344 44667788888888776543
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.11 E-value=0.055 Score=49.82 Aligned_cols=68 Identities=19% Similarity=0.239 Sum_probs=54.6
Q ss_pred HHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 44 AAELFPYLVELQSSPESLVRKSLIETIEDIGLK--AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 44 l~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~--~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
.++++|.+.++..|++.+||+..++.+..++.. ...+...+++.+..+++|+++.|.+.++.+.+.+.
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 456777776777789999999999999988753 23456778888889999999999999998887654
No 10
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.92 E-value=0.1 Score=41.73 Aligned_cols=144 Identities=19% Similarity=0.117 Sum_probs=79.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHH
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLL 89 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~ 89 (241)
+..|-++...+|...+...+..+.++ .+| +.+|.+++.-.|++..+|...+..+...+. + ..++.|.
T Consensus 47 ~~~L~~~l~~~~~~vr~~a~~~L~~~---~~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----~~~~~L~ 113 (201)
T 3ltj_A 47 VEPLIKALKDEDAWVRRAAADALGQI---GDE----RAVEPLIKALKDEDGWVRQSAAVALGQIGD--E----RAVEPLI 113 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH---CCG----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----GGHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhh---CCH----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H----HHHHHHH
Confidence 33444444456655555555444443 344 455666665567888899999888877653 2 2445666
Q ss_pred HhhcCCChHHHHHHHHhhhhhhH-HHHHHHhhhhhccCCccchHHHHHHHHHHHH-----HHHHHHhccCCCCchHHHHH
Q 026208 90 AFLRDGDSGVAGKSIVCGTNFFC-RVLEEITMQFRWHGKVERWLEELWTWMVRFK-----DAVFAIALEPGLVGTKLLAL 163 (241)
Q Consensus 90 ~LL~d~d~~V~K~aI~~~t~lY~-~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K-----~~Il~~~~d~~n~Gvr~~ai 163 (241)
.+|+|+++.|...++.+.+.+-. .++..+. +.+ ......--...-..+..+. ..+.. ++++.+..||..|+
T Consensus 114 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l-~d~~~~vr~~A~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~A~ 190 (201)
T 3ltj_A 114 KALKDEDWFVRIAAAFALGEIGDERAVEPLI-KAL-KDEDGWVRQSAADALGEIGGERVRAAMEK-LAETGTGFARKVAV 190 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTCGGGHHHHH-HHT-TCSSHHHHHHHHHHHHHHCSHHHHHHHHH-HHHHCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCHHHHHHHH-HHH-cCCCHHHHHHHHHHHHHhCchhHHHHHHH-HHhCCCHHHHHHHH
Confidence 77788889888888888876542 1111111 211 1110011122222232222 23334 44567788999988
Q ss_pred HHHhHH
Q 026208 164 KFLETH 169 (241)
Q Consensus 164 KF~e~v 169 (241)
+.+.++
T Consensus 191 ~aL~~l 196 (201)
T 3ltj_A 191 NYLETH 196 (201)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 877654
No 11
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.16 Score=43.33 Aligned_cols=72 Identities=6% Similarity=0.057 Sum_probs=59.6
Q ss_pred HHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchh-------hhH-HHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHH
Q 026208 44 AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM-------EHS-SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (241)
Q Consensus 44 l~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~-------e~~-~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l 115 (241)
++.+++.+++.-..++..+|.....||..++.... .++ +.+++.|..++.|.++.|-+.|+.|++.+|+.+=
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 67888888876555677999999999988764322 367 8999999999999999999999999999998654
No 12
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.89 E-value=0.15 Score=46.91 Aligned_cols=148 Identities=13% Similarity=0.055 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCC-chHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc--hhhhHH
Q 026208 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADP-SLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK--AMEHSS 82 (241)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p-~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~--~~e~~~ 82 (241)
++.++..+.+....+|...+...+..+-++.....+ ...+.++|.++.+..|++..+|+..+..+..++.. ...+..
T Consensus 162 ~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 241 (588)
T 1b3u_A 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEA 241 (588)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 355666666665556666777777777776643332 34577888888887888899999999988887653 234566
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHH
Q 026208 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLA 162 (241)
Q Consensus 83 ~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~a 162 (241)
.+++.+..+++|+++.|-+.++.+++.+....= + +. ....+-..++. ++...+..||..|
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--------------~--~~---~~~~l~~~l~~-~l~d~~~~vr~~a 301 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--------------P--EI---TKTDLVPAFQN-LMKDCEAEVRAAA 301 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--------------H--HH---HHHTHHHHHHH-HHTCSSHHHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC--------------c--cc---chhHHHHHHHH-HhCCCcHHHHHHH
Confidence 788888889999999999999999888876421 0 00 01112233334 3345667788888
Q ss_pred HHHHhHHhhhc
Q 026208 163 LKFLETHVLLF 173 (241)
Q Consensus 163 iKF~e~vIl~q 173 (241)
.+.+..+.-..
T Consensus 302 ~~~l~~~~~~~ 312 (588)
T 1b3u_A 302 SHKVKEFCENL 312 (588)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHHh
Confidence 88877766543
No 13
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.86 E-value=0.15 Score=42.40 Aligned_cols=176 Identities=12% Similarity=0.107 Sum_probs=119.4
Q ss_pred hcCCChHHHHHHHHHHHHHHhcC-C--CchHHhhhHHHHhhc-CCchhhHHHHHHHHHHHHhhch----hhhHHHHHHHH
Q 026208 17 NNHGDLAVKLSSLKQVRGILSSA-D--PSLAAELFPYLVELQ-SSPESLVRKSLIETIEDIGLKA----MEHSSILMPVL 88 (241)
Q Consensus 17 ~~~~d~~~kl~~L~q~relll~~-~--p~ll~~~lp~vl~~~-~d~~~~vrk~~~~fiee~~~~~----~e~~~~~v~~L 88 (241)
....|-.++...+..+..++... . ..-+.++++.+...- .|++..||.-.+.-++..+..- ..+...+++.|
T Consensus 24 l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~l 103 (242)
T 2qk2_A 24 LEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSL 103 (242)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34577788999999999988641 1 223467777776655 3889999999999998877432 35788899999
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhH
Q 026208 89 LAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLET 168 (241)
Q Consensus 89 ~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~ 168 (241)
...+.|.++.|...+..+...++.. ...+ .+=..++. .+++.|..+|..++.|+.+
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~----------------~~~~-------~ll~~l~~-~l~~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAS----------------TSLE-------AQQESIVE-SLSNKNPSVKSETALFIAR 159 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTT----------------SCHH-------HHHHHHHH-HTTCSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHc----------------CCHH-------HHHHHHHH-HHcCCChHHHHHHHHHHHH
Confidence 9999999998888777777666441 1112 23344555 5678899999999999988
Q ss_pred HhhhccCCCCCcccccccCCCccccccccCCCCCCC--ChhhHHHHHHHHHHHHHHHHhh
Q 026208 169 HVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFL--DPVSLTSEANRMLGTLMDLLQS 226 (241)
Q Consensus 169 vIl~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~L--~~~~Le~Ea~~lLd~LL~~l~~ 226 (241)
++-.+.+..... . .+. ..+|.--+.+ ........|...+..+...+..
T Consensus 160 ~l~~~~~~~~~~-----~----~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 160 ALTRTQPTALNK-----K----LLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHTTCCGGGCCH-----H----HHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCCCccH-----H----HHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 765543220000 0 111 2334433444 3456788888888888877764
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.78 E-value=0.12 Score=50.81 Aligned_cols=141 Identities=11% Similarity=0.114 Sum_probs=84.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc--------hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch----h
Q 026208 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPS--------LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA----M 78 (241)
Q Consensus 11 ~lln~A~~~~d~~~kl~~L~q~relll~~~p~--------ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~----~ 78 (241)
..|-+....+|...+-..+..+..+..+-.+. .++.++|.++.+-.+++.+||...+..+...+... .
T Consensus 131 ~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 131 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence 33334444455555656666666655322211 25667777777656777888888877776544322 2
Q ss_pred hhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCch
Q 026208 79 EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGT 158 (241)
Q Consensus 79 e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gv 158 (241)
.++..+++.+..++.|+++.|.+.++.|++.+....-+.+ + ++.+. +-..++. ...+.++.|
T Consensus 211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~--~--------~~l~~-------l~~~l~~-~~~~~~~~v 272 (852)
T 4fdd_A 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL--L--------PHMHN-------IVEYMLQ-RTQDQDENV 272 (852)
T ss_dssp TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH--G--------GGHHH-------HHHHHHH-HHTCSSHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH--H--------HHHHH-------HHHHHHH-HccCCcHHH
Confidence 3456777778888888888888888888876655332111 1 22232 3333344 335567889
Q ss_pred HHHHHHHHhHH
Q 026208 159 KLLALKFLETH 169 (241)
Q Consensus 159 r~~aiKF~e~v 169 (241)
|..|+.|+-.+
T Consensus 273 r~~a~e~l~~l 283 (852)
T 4fdd_A 273 ALEACEFWLTL 283 (852)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 15
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.75 E-value=0.044 Score=51.97 Aligned_cols=114 Identities=17% Similarity=0.104 Sum_probs=57.2
Q ss_pred chhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHH-----HHHHHhhhhhccCCccchH
Q 026208 58 PESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR-----VLEEITMQFRWHGKVERWL 132 (241)
Q Consensus 58 ~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~-----~l~~~~~~~~~~~~~~~~~ 132 (241)
.+...+|..++||-.-++.-|++...+++++..|.+|+|+.|-+.||-..-.+.+- +-+-++ |-+.......-.
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~-QlLqtdd~~E~~ 118 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILT-QLLQTDDSAEFN 118 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHH-HHTTCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHH-HHHhccchHHHH
Confidence 34556666666666555555666666666666666666666666666655544431 111111 222211111122
Q ss_pred HHHHHHHHHHHHH-------HHHHhccCCCCchHHHHHHHHhHHhhhc
Q 026208 133 EELWTWMVRFKDA-------VFAIALEPGLVGTKLLALKFLETHVLLF 173 (241)
Q Consensus 133 ~~~W~~m~~~K~~-------Il~~~~d~~n~Gvr~~aiKF~e~vIl~q 173 (241)
.-.|..|+-+|.+ ++. -+.++.+.+|--++||+..-+..-
T Consensus 119 ~V~~sL~sllk~Dpk~tl~~lf~-~i~~~~e~~Rer~lkFi~~kl~~l 165 (507)
T 3u0r_A 119 LVNNALLSIFKMDAKGTLGGLFS-QILQGEDIVRERAIKFLSTKLKTL 165 (507)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHhcChHHHHHHHHH-HHcccchHHHHHHHHHHHHHHhhc
Confidence 2233334444321 112 112356889999999986655543
No 16
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.59 E-value=0.66 Score=36.84 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=85.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCch----H-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh-----
Q 026208 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSL----A-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH----- 80 (241)
Q Consensus 11 ~lln~A~~~~d~~~kl~~L~q~relll~~~p~l----l-~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~----- 80 (241)
..|-+....++...+...+..+.++.. .++.. . .+.+|.++.+-.+++..+|+..+..|..++...++.
T Consensus 57 ~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 135 (210)
T 4db6_A 57 PALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhc-CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 333334444565566677777777664 33321 1 346677777766777888888888888887544332
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHH--HHHHHHHHHhccCCCCch
Q 026208 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMV--RFKDAVFAIALEPGLVGT 158 (241)
Q Consensus 81 ~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~--~~K~~Il~~~~d~~n~Gv 158 (241)
-..+++.|..+++++++.|.+.++.+..++-.. + + +.. ..+. ..-..+.. ++.+++..+
T Consensus 136 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~------------~---~--~~~-~~~~~~g~i~~L~~-ll~~~~~~v 196 (210)
T 4db6_A 136 DAGALPALVQLLSSPNEQILQEALWALSNIASG------------G---N--EQK-QAVKEAGALEKLEQ-LQSHENEKI 196 (210)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS------------C---H--HHH-HHHHHTTHHHHHHH-GGGCSCHHH
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC------------C---c--HHH-HHHHHCCCHHHHHH-HHhCCCHHH
Confidence 234677788888888888888888777766321 0 0 000 0010 12234445 557888899
Q ss_pred HHHHHHHHhHH
Q 026208 159 KLLALKFLETH 169 (241)
Q Consensus 159 r~~aiKF~e~v 169 (241)
|-.|...+..+
T Consensus 197 ~~~a~~aL~~l 207 (210)
T 4db6_A 197 QKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 17
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.59 E-value=0.072 Score=45.11 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=81.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHH
Q 026208 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVL 88 (241)
Q Consensus 9 v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L 88 (241)
++..|-+--..+|...|+..=..+.|+. ..+|.++++++.++.....+++..=|--...||+-.+-.+++++.--+|.|
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIa-ranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL 186 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIA-KANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRI 186 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHH
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHH-HhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHH
Confidence 3444444445588777777666666665 689999999999999988888877777788999988888899988889999
Q ss_pred HHhhcCCChHHHHHHHHhhhhh
Q 026208 89 LAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 89 ~~LL~d~d~~V~K~aI~~~t~l 110 (241)
..||.|.|..|--.++.+.+++
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCcchhhhHHHHHHHHHH
Confidence 9999999999988888877654
No 18
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=95.43 E-value=0.3 Score=39.18 Aligned_cols=140 Identities=18% Similarity=0.097 Sum_probs=79.8
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhh
Q 026208 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFL 92 (241)
Q Consensus 13 ln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL 92 (241)
|-++...+|...+...+..+.++ .++ +.+|.+++.-.|++..+|.+.+..+..++. + ..++.|..++
T Consensus 55 L~~~l~~~~~~vr~~a~~aL~~~---~~~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l 121 (211)
T 3ltm_A 55 LIKALKDEDAWVRRAAADALGQI---GDE----RAVEPLIKALKDEDGWVRQSAAVALGQIGD--E----RAVEPLIKAL 121 (211)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHH---CCG----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHhh---CCH----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H----HHHHHHHHHH
Confidence 33334445655555555444443 333 556666666568888999999999987753 2 3455677788
Q ss_pred cCCChHHHHHHHHhhhhhhHH-HHHHHhhhhhccCCccchHHHHHHHHHHHH-----HHHHHHhccCCCCchHHHHHHHH
Q 026208 93 RDGDSGVAGKSIVCGTNFFCR-VLEEITMQFRWHGKVERWLEELWTWMVRFK-----DAVFAIALEPGLVGTKLLALKFL 166 (241)
Q Consensus 93 ~d~d~~V~K~aI~~~t~lY~~-~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K-----~~Il~~~~d~~n~Gvr~~aiKF~ 166 (241)
+|+++.|...++.+.+.+-.. ++..+. +.+ ....+.--...-..+..+. ..+.. ++++++..||..|+.-+
T Consensus 122 ~d~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~A~~aL 198 (211)
T 3ltm_A 122 KDEDWFVRIAAAFALGEIGDERAVEPLI-KAL-KDEDGWVRQSAADALGEIGGERVRAAMEK-LAETGTGFARKVAVNYL 198 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGGGHHHHH-HHT-TCSSHHHHHHHHHHHHHHCSHHHHHHHHH-HHHHCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHH-cCCCHHHHHHHHHHHHHhCchhHHHHHHH-HHhCCCHHHHHHHHHHH
Confidence 999999999999988766321 111111 222 1111111122333333332 23344 44567778998888766
Q ss_pred hH
Q 026208 167 ET 168 (241)
Q Consensus 167 e~ 168 (241)
..
T Consensus 199 ~~ 200 (211)
T 3ltm_A 199 ET 200 (211)
T ss_dssp HC
T ss_pred Hh
Confidence 43
No 19
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.39 E-value=0.18 Score=49.57 Aligned_cols=107 Identities=16% Similarity=0.225 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh----
Q 026208 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH---- 80 (241)
Q Consensus 5 ~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~---- 80 (241)
.++.+-+.+=++...++...+...-.-+.+++....|.-.++++|.+++.-.+.+..+|.-....+..+|...++.
T Consensus 87 ~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 87 VTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchh
Confidence 3444555554454445543444444445555544455566788888887766777889998888888887654332
Q ss_pred -----HHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 81 -----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 81 -----~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
+..+++.+..++.|+++.|.+.|+.+.+.+.
T Consensus 167 ~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI 202 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTT
T ss_pred hhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 6678888888889999999888888887654
No 20
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.18 E-value=0.99 Score=36.38 Aligned_cols=141 Identities=19% Similarity=0.119 Sum_probs=91.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchH-----HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH---
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS--- 81 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll-----~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~--- 81 (241)
+..|-+....+|...+...+..+..+.. .++..- .+.+|.++.+-.+++.++|+..+..+..++...++..
T Consensus 46 i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 46 VEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444445666677777777777774 323221 2567888887667889999999999998885443322
Q ss_pred --HHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHH--HHHHHHHHHhccCCCCc
Q 026208 82 --SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMV--RFKDAVFAIALEPGLVG 157 (241)
Q Consensus 82 --~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~--~~K~~Il~~~~d~~n~G 157 (241)
...++.|..+++++++.+.+.++.+.+++-..- +..-..+. ..=..++. ++.+.+..
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~------------------~~~~~~~~~~~~i~~L~~-ll~~~~~~ 185 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP------------------DEAIKAIVDAGGVEVLVK-LLTSTDSE 185 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC------------------HHHHHHHHHTTHHHHHHH-HTTCSCHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC------------------HHHHHHHHHCcCHHHHHH-HHCCCCHH
Confidence 246788888999999999999888887764210 00000111 12233455 55677788
Q ss_pred hHHHHHHHHhHHh
Q 026208 158 TKLLALKFLETHV 170 (241)
Q Consensus 158 vr~~aiKF~e~vI 170 (241)
+|..|+..+..+.
T Consensus 186 v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 186 VQKEAARALANIA 198 (252)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887664
No 21
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=95.14 E-value=0.25 Score=39.37 Aligned_cols=136 Identities=14% Similarity=0.047 Sum_probs=82.6
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCCh
Q 026208 18 NHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDS 97 (241)
Q Consensus 18 ~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~ 97 (241)
..+|...+...+..+.++ .++ +.+|.+++.-.+++..+|+..+..+...+. + ..++.|..+|+|+++
T Consensus 24 ~~~~~~vr~~A~~~L~~~---~~~----~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~----~~~~~L~~~l~d~~~ 90 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKI---GDE----RAVEPLIKALKDEDAWVRRAAADALGQIGD--E----RAVEPLIKALKDEDG 90 (201)
T ss_dssp TCSCHHHHHHHHHHHHHH---CCG----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTCSSH
T ss_pred cCCCHHHHHHHHHHHHhc---CCh----hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----HHHHHHHHHHcCCCH
Confidence 446665666555555543 333 556666666568889999999999987753 2 345677788899999
Q ss_pred HHHHHHHHhhhhhhHH-HHHHHhhhhhccCCccchHHHHHHHHHHHH-----HHHHHHhccCCCCchHHHHHHHHhHH
Q 026208 98 GVAGKSIVCGTNFFCR-VLEEITMQFRWHGKVERWLEELWTWMVRFK-----DAVFAIALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 98 ~V~K~aI~~~t~lY~~-~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K-----~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (241)
.|...++.+.+.+-.. ++..+. +.+ ......--...-..+..+. ..+.. ++.+.+..||..|+.-+..+
T Consensus 91 ~vr~~a~~aL~~~~~~~~~~~L~-~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDERAVEPLI-KAL-KDEDWFVRIAAAFALGEIGDERAVEPLIK-ALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHH-HHT-TCSSHHHHHHHHHHHHHHTCGGGHHHHHH-HTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHH-HHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHcCCCHHHHHHHHHHHHHh
Confidence 9999999998765332 222221 222 1111111122233333333 23444 55667788999998887665
No 22
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.95 E-value=1.2 Score=35.96 Aligned_cols=144 Identities=19% Similarity=0.088 Sum_probs=96.7
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchH-----HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh----
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH---- 80 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll-----~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~---- 80 (241)
+..|-+....+|...+...+..+..+.. .+|... .+.+|.++++-.+.+.++|+..+..+..++...++.
T Consensus 88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 166 (252)
T 4hxt_A 88 VEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 166 (252)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444445666677777888888774 333221 357888888877888999999999999988644332
Q ss_pred -HHHHHHHHHHhhcCCChHHHHHHHHhhhhhhH---HHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCC
Q 026208 81 -SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC---RVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLV 156 (241)
Q Consensus 81 -~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~---~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~ 156 (241)
-..+++.|..++.++++.|.+.++.+..++-. ...+.+.. ...-..++. +..+++.
T Consensus 167 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-------------------~~~i~~L~~-ll~~~~~ 226 (252)
T 4hxt_A 167 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-------------------AGGVEVLQK-LLTSTDS 226 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-------------------TTHHHHHHH-GGGCSCH
T ss_pred HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-------------------CCCHHHHHH-HHCCCcH
Confidence 24478889999999999999998888776642 11111100 012334555 5577888
Q ss_pred chHHHHHHHHhHHhhhcc
Q 026208 157 GTKLLALKFLETHVLLFT 174 (241)
Q Consensus 157 Gvr~~aiKF~e~vIl~qT 174 (241)
.+|..|...+..+.-...
T Consensus 227 ~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999987755433
No 23
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.84 E-value=0.15 Score=38.52 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=11.2
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 86 PVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 86 ~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
+.|..+|+|+++.|.+.++.+.+.+
T Consensus 76 ~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 76 EPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3344444444444444444444443
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.62 E-value=0.13 Score=49.43 Aligned_cols=133 Identities=13% Similarity=0.018 Sum_probs=75.9
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh-----------------
Q 026208 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL----------------- 75 (241)
Q Consensus 13 ln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~----------------- 75 (241)
|.+....+|...|.+.++++--+.+.+++. +..+++++.+-.+++.++||-+-=++...+.
T Consensus 39 ir~~l~~~~~~~k~~~l~kli~~~~~G~d~--~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL 116 (618)
T 1w63_A 39 IRSSFREEDNTYRCRNVAKLLYMHMLGYPA--HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDL 116 (618)
T ss_dssp HHHHHTTTCTTTHHHHHHHHHHHHHTTCCC--GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHcCCCC--cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 333333334446777777776666655542 3345556555445555555554433333221
Q ss_pred ------------------chhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHH
Q 026208 76 ------------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWT 137 (241)
Q Consensus 76 ------------------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~ 137 (241)
..++++..+++.+..+|+|.+|.|-|.|+.|...+|+..-+.+ ..
T Consensus 117 ~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-~~---------------- 179 (618)
T 1w63_A 117 NHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-EM---------------- 179 (618)
T ss_dssp SCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-GG----------------
T ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-HH----------------
Confidence 1245666777788888888888888888888888887432111 01
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHhHH
Q 026208 138 WMVRFKDAVFAIALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 138 ~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (241)
+-..+.. ++...|.||+.+|+..+..+
T Consensus 180 ----~~~~l~~-lL~D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 180 ----FLPATKN-LLNEKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp ----GGGGTTT-STTCCCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHH-HhCCCCHhHHHHHHHHHHHH
Confidence 1222223 44556667777777666554
No 25
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=94.61 E-value=0.11 Score=50.05 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=74.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhc--CCchhhHHHHHHHHHHHHhhchhhhHH--HHHH
Q 026208 11 SLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQ--SSPESLVRKSLIETIEDIGLKAMEHSS--ILMP 86 (241)
Q Consensus 11 ~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~--~d~~~~vrk~~~~fiee~~~~~~e~~~--~~v~ 86 (241)
..+......++--.+.-.|+..-.+ ..|++++.++|.+...- .|+++.|||-.+--+..+++.+++.+. ..++
T Consensus 114 N~l~kDl~~~n~~ir~lALr~L~~i---~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~ 190 (621)
T 2vgl_A 114 NAIKNDLASRNPTFMGLALHCIANV---GSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTS 190 (621)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHH---CCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHH
Confidence 3333444455543444444444443 56888899999998876 899999999999999899999999888 8999
Q ss_pred HHHHhhcCCChHHHHHHHHhhhhh
Q 026208 87 VLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 87 ~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
.+..+|.|.||.|+-.|+.+...+
T Consensus 191 ~l~~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 191 RVVHLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHHH
Confidence 999999999999988888766554
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.59 E-value=0.66 Score=37.91 Aligned_cols=139 Identities=16% Similarity=0.147 Sum_probs=86.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc---hH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH----
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPS---LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS---- 81 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~---ll-~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~---- 81 (241)
+..|-+....++...+...+..+..+..+.+.. +. .+.+|.++++-.+++.++|+..+..+..++...++..
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 177 (252)
T 4db8_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 177 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 333444444456556666677777766432211 11 3577888877667788999999999988876443322
Q ss_pred -HHHHHHHHHhhcCCChHHHHHHHHhhhhhhH---HHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCc
Q 026208 82 -SILMPVLLAFLRDGDSGVAGKSIVCGTNFFC---RVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVG 157 (241)
Q Consensus 82 -~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~---~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~G 157 (241)
..+++.|..+|.++++.|.+.++.+.+++-. .....+... ..-..++. ++.+++..
T Consensus 178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-------------------g~i~~L~~-ll~~~~~~ 237 (252)
T 4db8_A 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA-------------------GALEKLEQ-LQSHENEK 237 (252)
T ss_dssp HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-------------------THHHHHHT-TTTCSSSH
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-------------------CcHHHHHH-HhCCCCHH
Confidence 4457788888898899999888888887742 111111000 12233444 55677888
Q ss_pred hHHHHHHHHhH
Q 026208 158 TKLLALKFLET 168 (241)
Q Consensus 158 vr~~aiKF~e~ 168 (241)
+|..|...+..
T Consensus 238 v~~~A~~~L~~ 248 (252)
T 4db8_A 238 IQKEAQEALEK 248 (252)
T ss_dssp HHHTHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888776654
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.43 E-value=0.98 Score=39.93 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=89.0
Q ss_pred hhcCCChHHHHHHHHHHHHHHhcCCCc----hH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh----H-HHHH
Q 026208 16 ANNHGDLAVKLSSLKQVRGILSSADPS----LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH----S-SILM 85 (241)
Q Consensus 16 A~~~~d~~~kl~~L~q~relll~~~p~----ll-~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~----~-~~~v 85 (241)
....+|...+...+..+..+.. .++. ++ .+.+|.++++-.+++..+|+..+..|..++...++. + ..++
T Consensus 242 ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l 320 (450)
T 2jdq_A 242 LLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTT-SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHCCCchhHHHHHHHHHHHHhh-CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 3334666667777777777764 3332 11 257787877766778899999999998887533221 1 3677
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Q 026208 86 PVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKF 165 (241)
Q Consensus 86 ~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF 165 (241)
+.|..+|.++++.|.+.++.+.+++-...-. ......++ ..+-..++. ++++++..+|..|+..
T Consensus 321 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~-------------~~~~~l~~--~~~i~~L~~-ll~~~~~~v~~~a~~a 384 (450)
T 2jdq_A 321 PALISILQTAEFRTRKEAAWAITNATSGGSA-------------EQIKYLVE--LGCIKPLCD-LLTVMDSKIVQVALNG 384 (450)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHCCH-------------HHHHHHHH--HTCHHHHHH-GGGSSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH-------------HHHHHHHH--CCCHHHHHH-HhcCCCHHHHHHHHHH
Confidence 7888888899999999988888877432000 00011111 113344555 5566788899999988
Q ss_pred HhHHhh
Q 026208 166 LETHVL 171 (241)
Q Consensus 166 ~e~vIl 171 (241)
+..+.-
T Consensus 385 L~~l~~ 390 (450)
T 2jdq_A 385 LENILR 390 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.32 E-value=0.29 Score=43.41 Aligned_cols=94 Identities=14% Similarity=0.176 Sum_probs=70.9
Q ss_pred cCCChHHHHHHHHHHHHHHh-cCCCc---hHH--hhhHHHHhhcCCc-hhhHHHHHHHHHHHHhhchhhh-----HHHHH
Q 026208 18 NHGDLAVKLSSLKQVRGILS-SADPS---LAA--ELFPYLVELQSSP-ESLVRKSLIETIEDIGLKAMEH-----SSILM 85 (241)
Q Consensus 18 ~~~d~~~kl~~L~q~relll-~~~p~---ll~--~~lp~vl~~~~d~-~~~vrk~~~~fiee~~~~~~e~-----~~~~v 85 (241)
.++|...+...+..+++++. +.+|. .+. +++|.++++-.+. +.++|...+..+..++...++. -..++
T Consensus 30 ~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 109 (450)
T 2jdq_A 30 FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAV 109 (450)
T ss_dssp HSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH
Confidence 35677789999999999875 24443 222 6888888764455 7899999999999988643332 14578
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 86 PVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 86 ~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
+.|..+|.++++.|...|+.+.+++-
T Consensus 110 ~~L~~lL~~~~~~vr~~a~~~L~~l~ 135 (450)
T 2jdq_A 110 PIFIELLSSEFEDVQEQAVWALGNIA 135 (450)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 89999999999999999988887664
No 29
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.24 E-value=0.23 Score=44.10 Aligned_cols=114 Identities=18% Similarity=0.087 Sum_probs=72.9
Q ss_pred HHhhhHHHHhhcCCc--hhhHHHHHHHHHHHHhhch-----hhhHHHHHHHHHHhhcCC--ChHHHHHHHHhhhhhhHHH
Q 026208 44 AAELFPYLVELQSSP--ESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCRV 114 (241)
Q Consensus 44 l~~~lp~vl~~~~d~--~~~vrk~~~~fiee~~~~~-----~e~~~~~v~~L~~LL~d~--d~~V~K~aI~~~t~lY~~~ 114 (241)
.++++|.+++.-.+. +..+|......+..+|... ..++..+++.+..++.|+ ++.|.+.++.|++++...+
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 357777777664455 7789999999998887632 356778888888899988 7889888998887753211
Q ss_pred HHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhc
Q 026208 115 LEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVLLF 173 (241)
Q Consensus 115 l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~q 173 (241)
- .....|.....+-..+.. ...+.+..+|..+++.+..++-..
T Consensus 206 ~---------------~~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 206 K---------------ANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp H---------------HHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred H---------------HhhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 011112211112222223 445667788888888877666443
No 30
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=94.23 E-value=0.86 Score=46.63 Aligned_cols=154 Identities=9% Similarity=0.059 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcC----CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-hhhh
Q 026208 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSA----DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEH 80 (241)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~----~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~-~~e~ 80 (241)
.-++..+|.... .+|...+...+.++.+.+... +|...+.+++.+++.-.|++.++|+..+..+..++.. .+++
T Consensus 5 ~~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ 83 (1230)
T ss_dssp CHHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 445667777744 477778888888888876432 3345678888888776688999999999888887643 2357
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHH
Q 026208 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKL 160 (241)
Q Consensus 81 ~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~ 160 (241)
...+++.|...+.|+++.|...+..+.+.+....-... .+ .......|..+. ..++..+-++.+..+|-
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~-----~~---~~~~~~~~~~ll---p~L~~~l~~~~~~~~~~ 152 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS-----SG---SALAANVCKKIT---GRLTSAIAKQEDVSVQL 152 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-------------CCTHHHHHHHHH---HHHHHHHSCCSCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc-----cc---cchHHHHHHHHH---HHHHHHHcCCCchHHHH
Confidence 78888888888899998886666666655543211000 00 012345666443 34455232367788999
Q ss_pred HHHHHHhHHhh
Q 026208 161 LALKFLETHVL 171 (241)
Q Consensus 161 ~aiKF~e~vIl 171 (241)
.|+..+..++-
T Consensus 153 ~al~~l~~~~~ 163 (1230)
T 1u6g_C 153 EALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877653
No 31
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.06 E-value=0.34 Score=40.71 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=70.5
Q ss_pred HHHHHHHHHH-hhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHH
Q 026208 6 RDQALSLLAA-ANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSIL 84 (241)
Q Consensus 6 ~~~v~~lln~-A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~ 84 (241)
...++.+|.+ +...+|...+......+.++-. .+|...+.++|.++..-.|++..||...+..+..++. + .+
T Consensus 88 ~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~-~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--~----~~ 160 (280)
T 1oyz_A 88 EDNVFNILNNMALNDKSACVRATAIESTAQRCK-KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--K----AT 160 (280)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------CC
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-cCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--H----HH
Confidence 4556777764 4455676677777776666652 3454556777877777678888899888888775543 2 24
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhhh---hHHHHHHH
Q 026208 85 MPVLLAFLRDGDSGVAGKSIVCGTNF---FCRVLEEI 118 (241)
Q Consensus 85 v~~L~~LL~d~d~~V~K~aI~~~t~l---Y~~~l~~~ 118 (241)
++.|..++.|+++.|...++.+.+.+ -+.++..+
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L 197 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF 197 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 55677778888888888888888777 34444333
No 32
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=94.03 E-value=0.37 Score=43.71 Aligned_cols=123 Identities=10% Similarity=0.058 Sum_probs=80.0
Q ss_pred CCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhH---HHH
Q 026208 39 ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC---RVL 115 (241)
Q Consensus 39 ~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~---~~l 115 (241)
.+|++++.+.+.+-..-.|+++-|||-.+==....+...++.+...++.+..++.|.+|.|+=.|+.....+.. .++
T Consensus 132 ~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~ 211 (355)
T 3tjz_B 132 TDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAV 211 (355)
T ss_dssp CCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHH
Confidence 56778888888777666788888888776555566777888888888888888888888888666666655543 455
Q ss_pred HHHhhhhhccCCccchHHHHHHHHHHHH--------------HHHHHH---hccCCCCchHHHHHHHH
Q 026208 116 EEITMQFRWHGKVERWLEELWTWMVRFK--------------DAVFAI---ALEPGLVGTKLLALKFL 166 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~W~~m~~~K--------------~~Il~~---~~d~~n~Gvr~~aiKF~ 166 (241)
.++..++..++ ...-|..+.-++ ..++.+ ++.+.|..|-.-|+|-+
T Consensus 212 ~kLv~~l~~~~-----l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 212 SKMISKFTRHG-----LKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp HHHHHHHHSSC-----CSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-----CcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 44433322111 123555554444 223332 44678889999999876
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.70 E-value=0.098 Score=50.25 Aligned_cols=99 Identities=18% Similarity=0.167 Sum_probs=74.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHH
Q 026208 10 LSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLL 89 (241)
Q Consensus 10 ~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~ 89 (241)
+..|.....+++--.+...|+..-.+. .|.+.+.++|.+..+-.|+++.|||-.+--+..++...++.+...++.+.
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~ 185 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATK 185 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTT
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 344444444544434555555444433 56677888888888877899999999999999999989999888999999
Q ss_pred HhhcCCChHHHHHHHHhhhhhh
Q 026208 90 AFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 90 ~LL~d~d~~V~K~aI~~~t~lY 111 (241)
.+|.|.|+.|+-.|+.+...+.
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCHhHHHHHHHHHHHHH
Confidence 9999999999988877766554
No 34
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.62 E-value=3.6 Score=41.98 Aligned_cols=163 Identities=11% Similarity=0.092 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc---------hHHhhhHHHHhhcC-CchhhHHHHHHHHHHHHhhc
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS---------LAAELFPYLVELQS-SPESLVRKSLIETIEDIGLK 76 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~---------ll~~~lp~vl~~~~-d~~~~vrk~~~~fiee~~~~ 76 (241)
+.++..|-++...++...+-.....+.+++..-.+. ..++++|.+++.-. +++..+|....+.+.++|..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 455665555544444334555555566665444443 56888888876644 46778999999999888743
Q ss_pred h----hhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhh------------HHHHHHHhhhhhccCCccchHHHHHHHHH
Q 026208 77 A----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF------------CRVLEEITMQFRWHGKVERWLEELWTWMV 140 (241)
Q Consensus 77 ~----~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY------------~~~l~~~~~~~~~~~~~~~~~~~~W~~m~ 140 (241)
. ..++..+++.+...|.|+++.|-+.|+.|.+.+. +.+++.+... ....+-...-++|..+.
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~--~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN--DSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT--CSSCSCTTHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHHH
Confidence 2 2367888889988999999999999998887653 3333222211 00011123345555554
Q ss_pred HH------------HHHHHHHhccCCCCchHHHHHHHHhHHhhh
Q 026208 141 RF------------KDAVFAIALEPGLVGTKLLALKFLETHVLL 172 (241)
Q Consensus 141 ~~------------K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (241)
.. -..+++ .+...++.||-.++.+++.++-.
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~-~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVK-FCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHH-HHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHH
Confidence 32 233444 33566788999999998877654
No 35
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.59 E-value=0.83 Score=42.53 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=72.0
Q ss_pred hhcCCChHHHHHHHHHHHHHHhc-CCCc---hH-HhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhH-----HHH
Q 026208 16 ANNHGDLAVKLSSLKQVRGILSS-ADPS---LA-AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHS-----SIL 84 (241)
Q Consensus 16 A~~~~d~~~kl~~L~q~relll~-~~p~---ll-~~~lp~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~-----~~~ 84 (241)
...+.|...++..+..+|.++.. ++|. ++ .+.+|.++++ ..+.+++++...+..|..++...++.. .-+
T Consensus 84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Ga 163 (529)
T 3tpo_A 84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 163 (529)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 33458888999999999999853 3442 11 4678888887 445668899999999988876544332 236
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 85 MPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 85 v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
++.|..||.++++.|...|+.+.++|
T Consensus 164 ip~Lv~LL~s~~~~v~e~A~~aL~nL 189 (529)
T 3tpo_A 164 IPAFISLLASPHAHISEQAVWALGNI 189 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 78899999999999999999998877
No 36
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.50 E-value=1.6 Score=38.58 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=88.1
Q ss_pred HHHHHHhhcCC--ChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCc--hhhHHHHHHHHHHHHhh--c-hh
Q 026208 10 LSLLAAANNHG--DLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSP--ESLVRKSLIETIEDIGL--K-AM 78 (241)
Q Consensus 10 ~~lln~A~~~~--d~~~kl~~L~q~relll~~~p~----ll~~~lp~vl~~~~d~--~~~vrk~~~~fiee~~~--~-~~ 78 (241)
+..|-+....+ |...+-..|.-++.+..+-.|. .++.+++.++..-.+. +.+||+..+.-+..... . ..
T Consensus 130 l~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (462)
T 1ibr_B 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (462)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334 6667778888888887544343 3455666665554455 68899988776655321 1 11
Q ss_pred ---hhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHH-HHHHHHHHHHHHHHHHhccCC
Q 026208 79 ---EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLE-ELWTWMVRFKDAVFAIALEPG 154 (241)
Q Consensus 79 ---e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~-~~W~~m~~~K~~Il~~~~d~~ 154 (241)
.....+++.+..++.++++.|.+.++.++..+....- ... .+... ..|..+. . .....
T Consensus 210 ~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-----~~~-----~~~~~~~l~~~~~-------~-~~~~~ 271 (462)
T 1ibr_B 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY-----QYM-----ETYMGPALFAITI-------E-AMKSD 271 (462)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-----GGC-----TTTTTTTHHHHHH-------H-HHHCS
T ss_pred hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHHH-------H-HHcCC
Confidence 1123356677777888999999888888877665332 111 13334 5666443 2 22456
Q ss_pred CCchHHHHHHHHhHHhhh
Q 026208 155 LVGTKLLALKFLETHVLL 172 (241)
Q Consensus 155 n~Gvr~~aiKF~e~vIl~ 172 (241)
++.||..|+.|+..++-.
T Consensus 272 ~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 272 IDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 788999999988777644
No 37
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.43 E-value=1.8 Score=39.20 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=77.5
Q ss_pred CCChHHHHH-HHHHHHHHHhcCCC--c-hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh-------------------
Q 026208 19 HGDLAVKLS-SLKQVRGILSSADP--S-LAAELFPYLVELQSSPESLVRKSLIETIEDIGL------------------- 75 (241)
Q Consensus 19 ~~d~~~kl~-~L~q~relll~~~p--~-ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~------------------- 75 (241)
++..+.|.. .++++=-+...+++ . ....+++.++.+-..++.++||-+==++.+..+
T Consensus 37 ~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~ 116 (355)
T 3tjz_B 37 TPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGK 116 (355)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSS
T ss_pred CCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC
Confidence 333445654 78888888877765 1 245778888887668888999988777766421
Q ss_pred ---------------chhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhh
Q 026208 76 ---------------KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFR 123 (241)
Q Consensus 76 ---------------~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~ 123 (241)
..++++..+.+.+...+.|.+|.|-|.|+.|+..+|+..-+.+ .+|+
T Consensus 117 N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-~~~~ 178 (355)
T 3tjz_B 117 EDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-KRWV 178 (355)
T ss_dssp CHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-HTTH
T ss_pred cHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-HHHH
Confidence 2457888888899999999999999999999999998877544 3443
No 38
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.40 E-value=0.38 Score=36.14 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=29.5
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 45 ~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
+.+.+.++++-.+++..+|...+..+.+.+.. . ++.|..+|+|+++.|...++.+.+.+
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--~-----~~~L~~~L~d~~~~vR~~A~~aL~~~ 69 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE--A-----FEPLLESLSNEDWRIRGAAAWIIGNF 69 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST--T-----HHHHHHGGGCSCHHHHHHHHHHHGGG
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--H-----HHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 45555555554566666666665555433221 1 35566667777777777777777665
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.16 E-value=1.1 Score=41.66 Aligned_cols=95 Identities=18% Similarity=0.286 Sum_probs=72.0
Q ss_pred hhcCCChHHHHHHHHHHHHHHhc-CCCc---hH-HhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchhhhHH-----HH
Q 026208 16 ANNHGDLAVKLSSLKQVRGILSS-ADPS---LA-AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAMEHSS-----IL 84 (241)
Q Consensus 16 A~~~~d~~~kl~~L~q~relll~-~~p~---ll-~~~lp~vl~~-~~d~~~~vrk~~~~fiee~~~~~~e~~~-----~~ 84 (241)
...+.|...|++...++|.++.. ++|- ++ .+.+|.++++ ..+.+++++...+..|..++...++... -+
T Consensus 65 ~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~Ga 144 (510)
T 3ul1_B 65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA 144 (510)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence 34558888999999999999853 3442 22 3568888887 4456678999899888888764444322 36
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 85 MPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 85 v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
++.|..+|.++++.|...|+.+.++|
T Consensus 145 Ip~Lv~lL~s~~~~v~e~A~~aL~nL 170 (510)
T 3ul1_B 145 IPAFISLLASPHAHISEQAVWALGNI 170 (510)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 78899999999999999999998887
No 40
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.08 E-value=1.7 Score=41.78 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=56.9
Q ss_pred HHHHhcCCCc-hHHhhhHHHHhhcCCc-hhhHHHHHHHHHHHHhhch-------hhhHHHHHHHHHHhhcCC--ChHHHH
Q 026208 33 RGILSSADPS-LAAELFPYLVELQSSP-ESLVRKSLIETIEDIGLKA-------MEHSSILMPVLLAFLRDG--DSGVAG 101 (241)
Q Consensus 33 relll~~~p~-ll~~~lp~vl~~~~d~-~~~vrk~~~~fiee~~~~~-------~e~~~~~v~~L~~LL~d~--d~~V~K 101 (241)
.+++....|. -.++++|.+++.-.+. +..+|.-....+..+|... ..+...+++.+...+.|+ ++.|.+
T Consensus 120 ~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~ 199 (861)
T 2bpt_A 120 AAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199 (861)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred HHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 3444333342 4578888888776566 7789998888888887631 346788888888888887 788999
Q ss_pred HHHHhhhhh
Q 026208 102 KSIVCGTNF 110 (241)
Q Consensus 102 ~aI~~~t~l 110 (241)
.++.|++++
T Consensus 200 ~al~~l~~~ 208 (861)
T 2bpt_A 200 AALNALADS 208 (861)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888765
No 41
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.07 E-value=3.9 Score=39.28 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=86.5
Q ss_pred HHHHHHHhhcCC-ChHHHHHHHHHHHHHHhcCCCc------hHHhhhHHHHhhcCCc--hhhHHHHHHHHHHHHhh---c
Q 026208 9 ALSLLAAANNHG-DLAVKLSSLKQVRGILSSADPS------LAAELFPYLVELQSSP--ESLVRKSLIETIEDIGL---K 76 (241)
Q Consensus 9 v~~lln~A~~~~-d~~~kl~~L~q~relll~~~p~------ll~~~lp~vl~~~~d~--~~~vrk~~~~fiee~~~---~ 76 (241)
++..|-+....+ |...+...|.-+..+..+-.+. ..+.+++.++..-.++ +.+||...+.-+..... .
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 214 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN 214 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 6666777777777776543333 4456666665554455 78899998887765421 1
Q ss_pred hh---hhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHH-HHHHHHHHHHHHHHHHhcc
Q 026208 77 AM---EHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLE-ELWTWMVRFKDAVFAIALE 152 (241)
Q Consensus 77 ~~---e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~-~~W~~m~~~K~~Il~~~~d 152 (241)
.. .....+++.|..++.++++.+.+.++.+++.+....- .. ..+... ..|.. ++. .+.
T Consensus 215 ~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~-----~~-----~~~~l~~~l~~~-------~~~-~~~ 276 (861)
T 2bpt_A 215 NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY-----TF-----MKPYMEQALYAL-------TIA-TMK 276 (861)
T ss_dssp HHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG-----GG-----CHHHHHHTHHHH-------HHH-HTT
T ss_pred HccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHHH-------HHH-HHc
Confidence 11 1124467777778889999999988888876654321 10 112223 34442 233 345
Q ss_pred CCCCchHHHHHHHHhHHhhh
Q 026208 153 PGLVGTKLLALKFLETHVLL 172 (241)
Q Consensus 153 ~~n~Gvr~~aiKF~e~vIl~ 172 (241)
+.++.+|..|+.|+..++-.
T Consensus 277 ~~~~~vr~~a~~~l~~l~~~ 296 (861)
T 2bpt_A 277 SPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp CSSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 66788888888888766543
No 42
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.57 E-value=0.68 Score=44.77 Aligned_cols=111 Identities=18% Similarity=0.120 Sum_probs=69.6
Q ss_pred HhhhHHHHhhcCCc--hhhHHHHHHHHHHHHhhch-----hhhHHHHHHHHHHhhcCC--ChHHHHHHHHhhhhhhHHHH
Q 026208 45 AELFPYLVELQSSP--ESLVRKSLIETIEDIGLKA-----MEHSSILMPVLLAFLRDG--DSGVAGKSIVCGTNFFCRVL 115 (241)
Q Consensus 45 ~~~lp~vl~~~~d~--~~~vrk~~~~fiee~~~~~-----~e~~~~~v~~L~~LL~d~--d~~V~K~aI~~~t~lY~~~l 115 (241)
++++|.+++.-.++ +..+|+-....+..++... ..+++.+++.+...+.++ ++.|.+.++.|++.+...+-
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45666666554455 7789999888888877532 456788888888888887 67888888888877654211
Q ss_pred HHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHhh
Q 026208 116 EEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHVL 171 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl 171 (241)
... ....|.. .+-..+.. .....+..+|..+++++..++-
T Consensus 207 ------~~~-------~~~~~~~--~il~~l~~-~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 207 ------ANF-------DKESERH--FIMQVVCE-ATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp ------HHH-------TSHHHHH--HHHHHHHH-HTTCSSHHHHHHHHHHHHHHHH
T ss_pred ------HHH-------HhHHHHH--HHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH
Confidence 000 0112211 12222333 3355667888888888877664
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.56 E-value=3.1 Score=32.76 Aligned_cols=138 Identities=19% Similarity=0.144 Sum_probs=91.6
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHhcCCCchH-----HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH-----H
Q 026208 13 LAAANNHGDLAVKLSSLKQVRGILSSADPSLA-----AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----S 82 (241)
Q Consensus 13 ln~A~~~~d~~~kl~~L~q~relll~~~p~ll-----~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~-----~ 82 (241)
|..-..++|...+...+..++.+.. .++... .+.+|.++++-.+++.++|...+..+..++...++.. .
T Consensus 17 l~~LL~s~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 17 MVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 3344445777788888999988874 333221 3567888888667788999999999998886443321 2
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHH--HHHHHHHHHHhccCCCCchHH
Q 026208 83 ILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWM--VRFKDAVFAIALEPGLVGTKL 160 (241)
Q Consensus 83 ~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m--~~~K~~Il~~~~d~~n~Gvr~ 160 (241)
..++.|..+|.++++.|.+.+..+..++-..- .+.-..+ ...=..+++ ++++++..+|.
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------------------~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~ 156 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGG------------------NEQIQAVIDAGALPALVQ-LLSSPNEQILQ 156 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC------------------HHHHHHHHHTTHHHHHHH-HTTCSCHHHHH
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC------------------HHHHHHHHHcCcHHHHHH-HHcCCCHHHHH
Confidence 36778889999999999999888887764210 0000000 012233445 55667888888
Q ss_pred HHHHHHhHHh
Q 026208 161 LALKFLETHV 170 (241)
Q Consensus 161 ~aiKF~e~vI 170 (241)
.|+..+..+.
T Consensus 157 ~a~~aL~~l~ 166 (210)
T 4db6_A 157 EALWALSNIA 166 (210)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776654
No 44
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.48 E-value=0.83 Score=37.29 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=74.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCch----H-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH--
Q 026208 9 ALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSL----A-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-- 81 (241)
Q Consensus 9 v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~l----l-~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~-- 81 (241)
++..|-+....+|...+...+..+..+..+ ++.. . .+.+|.++++-.+++.++|+..+..|..++...++..
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 217 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 217 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 344444555556766788888888888753 3321 1 5678888888667789999999999999886544322
Q ss_pred ---HHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 82 ---SILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 82 ---~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
..+++.|..++.++++.|.+.|..+.+++.
T Consensus 218 ~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 218 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 236778888999999999999999888774
No 45
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=92.21 E-value=1.5 Score=40.32 Aligned_cols=95 Identities=16% Similarity=0.253 Sum_probs=71.8
Q ss_pred hcCCChHHHHHHHHHHHHHHhcCC-Cc----hHHhhhHHHHhhcCCch-hhHHHHHHHHHHHHhhchhhhH-----HHHH
Q 026208 17 NNHGDLAVKLSSLKQVRGILSSAD-PS----LAAELFPYLVELQSSPE-SLVRKSLIETIEDIGLKAMEHS-----SILM 85 (241)
Q Consensus 17 ~~~~d~~~kl~~L~q~relll~~~-p~----ll~~~lp~vl~~~~d~~-~~vrk~~~~fiee~~~~~~e~~-----~~~v 85 (241)
...+|...+...+..++.++.... |. .-.+.+|.++++-.+.+ .++|...+..|..++...++.. ..++
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 345677788999999999986443 32 12467888888755554 8999999999998887544322 2478
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 86 PVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 86 ~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
+.|..+|.++++.|...|+.+.+++-
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVA 188 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 88999999999999999999988874
No 46
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.14 E-value=4.8 Score=36.91 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=67.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH-----HHHHHHHH
Q 026208 19 HGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLL 89 (241)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~~p~----ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~-----~~~v~~L~ 89 (241)
..+...+...+..+..+..+.+|. ....++|.++.+-.+.+.++|...+..|..++...++.. ..+++.|.
T Consensus 226 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv 305 (530)
T 1wa5_B 226 SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305 (530)
T ss_dssp SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHH
Confidence 356556777777788887654342 346778888887777788999999988888775433221 25677888
Q ss_pred HhhcCCChHHHHHHHHhhhhhh
Q 026208 90 AFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 90 ~LL~d~d~~V~K~aI~~~t~lY 111 (241)
.+|.++++.|.+.++.+.+++-
T Consensus 306 ~lL~~~~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 306 ELLSHESTLVQTPALRAVGNIV 327 (530)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCChhhHHHHHHHHHHHH
Confidence 8899999999988888877664
No 47
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=91.99 E-value=3.4 Score=37.80 Aligned_cols=141 Identities=13% Similarity=-0.000 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCCch----H-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-hhhhH-----HHHHHHHH
Q 026208 21 DLAVKLSSLKQVRGILSSADPSL----A-AELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHS-----SILMPVLL 89 (241)
Q Consensus 21 d~~~kl~~L~q~relll~~~p~l----l-~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~-~~e~~-----~~~v~~L~ 89 (241)
+...+......+..+.. .++.. + .+++|.++.+-.+.+.++|+..+..|..++.. .++.. ..+++.|.
T Consensus 342 ~~~v~~~A~~~L~nl~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~ 420 (528)
T 4b8j_A 342 KKSIKKEACWTISNITA-GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLC 420 (528)
T ss_dssp CHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHH
Confidence 55566666777777764 33321 1 36677777765566789999999999887654 33322 24678899
Q ss_pred HhhcCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHH--HHHHHHHhccCCCCchHHHHHHHHh
Q 026208 90 AFLRDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF--KDAVFAIALEPGLVGTKLLALKFLE 167 (241)
Q Consensus 90 ~LL~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~--K~~Il~~~~d~~n~Gvr~~aiKF~e 167 (241)
.+|.+.++.|.+.++.+..++....-... ..+. . ........+... .+.|.. +..+.|..|+-.|.+.++
T Consensus 421 ~lL~~~d~~v~~~al~~L~~l~~~~~~~~-~~~~--~----~~~~~~~~i~~~~~~~~l~~-L~~~~~~~v~~~a~~il~ 492 (528)
T 4b8j_A 421 DLLICPDIRIVTVCLEGLENILKVGETDK-TLAA--G----DVNVFSQMIDEAEGLEKIEN-LQSHDNNEIYEKAVKILE 492 (528)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHHHHH-HHHT--C----SCCHHHHHHHHTTHHHHHHH-GGGCSSHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhh-hccc--c----cccHHHHHHHHCCcHHHHHH-HHcCCCHHHHHHHHHHHH
Confidence 99999999999999999888876443100 0000 0 001111222211 244555 667899999999999998
Q ss_pred HHh
Q 026208 168 THV 170 (241)
Q Consensus 168 ~vI 170 (241)
++.
T Consensus 493 ~~~ 495 (528)
T 4b8j_A 493 AYW 495 (528)
T ss_dssp HHC
T ss_pred HHC
Confidence 763
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=91.80 E-value=1.1 Score=43.04 Aligned_cols=128 Identities=14% Similarity=-0.001 Sum_probs=83.3
Q ss_pred CChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHh-------------------------
Q 026208 20 GDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIG------------------------- 74 (241)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~------------------------- 74 (241)
.|..+|.+.+.++=-+.+.+++. +.++++++.+-.+++.++||-+-=++...+
T Consensus 50 ~~~~~k~~~l~Kli~l~~~G~d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~i 127 (621)
T 2vgl_A 50 LDGYSKKKYVCKLLFIFLLGHDI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTF 127 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCCC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHH
Confidence 35667777777776666555441 345667777766777778887654443321
Q ss_pred ----------hchhhhHHHHHHHHHHhh--cCCChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHH
Q 026208 75 ----------LKAMEHSSILMPVLLAFL--RDGDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRF 142 (241)
Q Consensus 75 ----------~~~~e~~~~~v~~L~~LL--~d~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~ 142 (241)
...++++..+++.+..++ .|.+|.|-|+|+.|+..+|+..= . .. .. . .+
T Consensus 128 r~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-----~-~~----~~---~------~~ 188 (621)
T 2vgl_A 128 MGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-----D-LV----PM---G------DW 188 (621)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-----G-GC----CC---C------SC
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-----h-hc----Cc---h------hH
Confidence 023567788888888888 89999999999999999998321 1 11 10 0 12
Q ss_pred HHHHHHHhccCCCCchHHHHHHHHhHH
Q 026208 143 KDAVFAIALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 143 K~~Il~~~~d~~n~Gvr~~aiKF~e~v 169 (241)
-+.+.. +++..+.||+.+|+-.+..+
T Consensus 189 ~~~l~~-lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 189 TSRVVH-LLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp HHHHHH-HTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhCCCCccHHHHHHHHHHHH
Confidence 344444 55667778888888776554
No 49
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=91.06 E-value=1.7 Score=39.98 Aligned_cols=95 Identities=22% Similarity=0.305 Sum_probs=72.0
Q ss_pred hcCCChHHHHHHHHHHHHHHhcC-CCc---hH-HhhhHHHHhhcCCc-hhhHHHHHHHHHHHHhhchhhhH-----HHHH
Q 026208 17 NNHGDLAVKLSSLKQVRGILSSA-DPS---LA-AELFPYLVELQSSP-ESLVRKSLIETIEDIGLKAMEHS-----SILM 85 (241)
Q Consensus 17 ~~~~d~~~kl~~L~q~relll~~-~p~---ll-~~~lp~vl~~~~d~-~~~vrk~~~~fiee~~~~~~e~~-----~~~v 85 (241)
....|...+...+..+++++... +|. +. .+++|.++++-.++ +.++|...+..|..++...++.. ..++
T Consensus 96 L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 175 (530)
T 1wa5_B 96 LNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 175 (530)
T ss_dssp HSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence 34467778889999999998643 442 11 46888888886665 78999999999999887543322 3457
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 86 PVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 86 ~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
+.|..+|.++++.|...|+.+.+++.
T Consensus 176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~ 201 (530)
T 1wa5_B 176 PLFIQLLYTGSVEVKEQAIWALGNVA 201 (530)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 88888899999999999999888774
No 50
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=90.58 E-value=2.2 Score=41.23 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc------
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK------ 76 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~----ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~------ 76 (241)
+.++..+.+....++-..|-..+.....+...-.|. .+++++|.++..-.|++..||.-.+..+...+..
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcc
Confidence 345666666655566666777777777766433332 4566777777666788899999998888887653
Q ss_pred hhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhH
Q 026208 77 AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (241)
Q Consensus 77 ~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (241)
...++..+++.|...+.|+ +.|...++.+.+++..
T Consensus 445 ~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 445 NDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp STTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 3468899999999999885 7777676666655543
No 51
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=87.35 E-value=13 Score=32.14 Aligned_cols=119 Identities=9% Similarity=0.003 Sum_probs=75.4
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-----hhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhh------hHH
Q 026208 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLK-----AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNF------FCR 113 (241)
Q Consensus 45 ~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~-----~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l------Y~~ 113 (241)
++.+.-+++|-++.+..++--....|||+.+. +...+...++.+..++.++|.-|.=+|+.|...+ -+.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34556666777788777777777778887665 2345667777777777777777776777666543 244
Q ss_pred HHHHHhh--hhhccCCccchHHHHHHHHH-------------HHHHHHHHHhccCCCCchHHHHHHHHhH
Q 026208 114 VLEEITM--QFRWHGKVERWLEELWTWMV-------------RFKDAVFAIALEPGLVGTKLLALKFLET 168 (241)
Q Consensus 114 ~l~~~~~--~~~~~~~~~~~~~~~W~~m~-------------~~K~~Il~~~~d~~n~Gvr~~aiKF~e~ 168 (241)
.|..+.. +.+.. +.++-.|.-.. .+-+.|++ ++.|.|.++|.++++++=.
T Consensus 112 ~y~Kl~~aL~dlik----~~~~il~~eaae~Lgklkv~~~~~~V~~~l~s-Ll~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 112 TFLKAAKTLVSLLE----SPDDMMRIETIDVLSKLQPLEDSKLVRTYINE-LVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp HHHHHHHHHHHHTT----SCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHH-HHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CCCchHHHHHHHHhCcCCcccchHHHHHHHHH-HHhCCChhHHHHHHHHHHH
Confidence 4444432 22222 22344444332 23467777 4499999999999998833
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=86.35 E-value=8.3 Score=35.57 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=76.0
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-hhhhH-----HHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHHHHHH
Q 026208 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLK-AMEHS-----SILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRVLEEI 118 (241)
Q Consensus 45 ~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~-~~e~~-----~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l~~~ 118 (241)
.+++|.++.+-.+.+.++|+..+..|.-++.. ..+.. ..+++.|..||+..|+.+++.++.+..+|....=
T Consensus 357 ~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~--- 433 (510)
T 3ul1_B 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE--- 433 (510)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH---
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH---
Confidence 35777777776677889999999888776542 33322 2457789999999999999999888888765332
Q ss_pred hhhhhccCCccchHHHHHHHHHH--HHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026208 119 TMQFRWHGKVERWLEELWTWMVR--FKDAVFAIALEPGLVGTKLLALKFLETHV 170 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~W~~m~~--~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (241)
+- ...+..-..+.+ .-+.|-. +..++|.-|+-.|.+++|+..
T Consensus 434 --~~-------~~~~~~~~~iee~ggl~~ie~-Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 434 --KL-------GETEKLSIMIEECGGLDKIEA-LQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp --TT-------TCHHHHHHHHHHTTHHHHHHH-GGGCSSHHHHHHHHHHHHHHC
T ss_pred --hc-------cchHHHHHHHHHcCcHHHHHH-HHcCCCHHHHHHHHHHHHHHC
Confidence 11 111111111111 1234444 678999999999999999984
No 53
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.33 E-value=4.4 Score=38.43 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=59.9
Q ss_pred cCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhH
Q 026208 38 SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (241)
Q Consensus 38 ~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (241)
..-|++-++-++.++++.-|.+..||++.+.=|-.+|+- ++++++.++|..||..+++.-+..+=.+.-++|+
T Consensus 57 k~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 57 KHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFK 129 (507)
T ss_dssp GGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 357888888888888998899999999999999889976 9999999999999998887555444455555554
No 54
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=85.38 E-value=5.1 Score=34.86 Aligned_cols=94 Identities=11% Similarity=0.110 Sum_probs=66.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCC---chH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh---H--HHHHHHHHH
Q 026208 20 GDLAVKLSSLKQVRGILSSADP---SLA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH---S--SILMPVLLA 90 (241)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p---~ll-~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~---~--~~~v~~L~~ 90 (241)
++...+...+..+-.++-++.| .+. .+.+|.++.+-.+++..+|+..+..|..++...++. + ..+++.|..
T Consensus 137 ~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~ 216 (296)
T 1xqr_A 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216 (296)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHH
Confidence 3455677777777777743333 132 367777777655678899999999998887644332 2 246778888
Q ss_pred hhcCCChHHHHHHHHhhhhhhHH
Q 026208 91 FLRDGDSGVAGKSIVCGTNFFCR 113 (241)
Q Consensus 91 LL~d~d~~V~K~aI~~~t~lY~~ 113 (241)
||..+++.|...+..+.+++-..
T Consensus 217 LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 217 LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999988888777543
No 55
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=85.04 E-value=12 Score=34.56 Aligned_cols=94 Identities=18% Similarity=0.286 Sum_probs=66.5
Q ss_pred cCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh-----HHHHHHHH
Q 026208 18 NHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-----SSILMPVL 88 (241)
Q Consensus 18 ~~~d~~~kl~~L~q~relll~~~p~----ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~-----~~~~v~~L 88 (241)
.+++...+...++.+..++.+.+.. +-.+.+|.++.+-.+++..+|+..+..|..++...+++ -..+++.|
T Consensus 303 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~L 382 (529)
T 3tpo_A 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 382 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHH
Confidence 3466667777888888877433211 11456677777766788899999999998887644332 22367788
Q ss_pred HHhhcCCChHHHHHHHHhhhhhh
Q 026208 89 LAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 89 ~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
..+|.++++.|.|.|+.+.+++-
T Consensus 383 v~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 383 VGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 88899999999999988877764
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=85.01 E-value=2.3 Score=37.20 Aligned_cols=150 Identities=12% Similarity=-0.001 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHhcCCC-c-hH-HhhhHHHHh-hcCCchhhHHHHHHHHHHHHhhchhh---hH--HHHHHHHHHhh
Q 026208 22 LAVKLSSLKQVRGILSSADP-S-LA-AELFPYLVE-LQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLAFL 92 (241)
Q Consensus 22 ~~~kl~~L~q~relll~~~p-~-ll-~~~lp~vl~-~~~d~~~~vrk~~~~fiee~~~~~~e---~~--~~~v~~L~~LL 92 (241)
..+|+..|....+++.+.+- . +. -+-+|.++. +-.+++.++|.+.+..|..++...++ .+ ..+++.|..+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 35788888888888853221 1 21 245788888 76678889999999999988754432 22 24778888888
Q ss_pred c-CCChHHHHHHHHhhhhhh---HHHHHHHhh--------hhhccCCccchHHHHHHHHHH------HHHHH--------
Q 026208 93 R-DGDSGVAGKSIVCGTNFF---CRVLEEITM--------QFRWHGKVERWLEELWTWMVR------FKDAV-------- 146 (241)
Q Consensus 93 ~-d~d~~V~K~aI~~~t~lY---~~~l~~~~~--------~~~~~~~~~~~~~~~W~~m~~------~K~~I-------- 146 (241)
+ +.++.|.+.|+-+.+++- +...+.+.. +.+..+...-..+.+|-.-.- .+..+
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 8 458899999999988874 332211111 111122111223445533221 12222
Q ss_pred -HHHhccCCCCchHHHHHHHHhHHhhh
Q 026208 147 -FAIALEPGLVGTKLLALKFLETHVLL 172 (241)
Q Consensus 147 -l~~~~d~~n~Gvr~~aiKF~e~vIl~ 172 (241)
+. ++.+.+..|+..|...+..++-.
T Consensus 214 Lv~-LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 214 LVA-LVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHH-HHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHH-HHcCCChhHHHHHHHHHHHHHhC
Confidence 33 55778889999999988877644
No 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=84.78 E-value=4.9 Score=41.09 Aligned_cols=97 Identities=18% Similarity=0.110 Sum_probs=65.4
Q ss_pred HHHH-HHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHh-hcCCchhhHHHHHHHHHHHHhhchhhhHHHHH
Q 026208 8 QALS-LLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVE-LQSSPESLVRKSLIETIEDIGLKAMEHSSILM 85 (241)
Q Consensus 8 ~v~~-lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~-~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v 85 (241)
.+++ ||.-+....+...+....-..-.+. -.+| +..|.+++ +..+.++.+|+-++--+..+|...+. ..++
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~-~g~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~~ai 649 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVL-LRDY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--QSAI 649 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT-SSSC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--HHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhc-cCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--HHHH
Confidence 3444 7777776644333333222222222 3566 44566665 34567889999999999888865553 6778
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 86 PVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 86 ~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
++|..++.|.|..|.+.||.+++-+-
T Consensus 650 d~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 650 DVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 89999999999999999998877543
No 58
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=84.50 E-value=7.9 Score=32.56 Aligned_cols=70 Identities=9% Similarity=0.125 Sum_probs=48.7
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHH----hhch---hhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHHH
Q 026208 45 AELFPYLVELQSSPESLVRKSLIETIEDI----GLKA---MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCRV 114 (241)
Q Consensus 45 ~~~lp~vl~~~~d~~~~vrk~~~~fiee~----~~~~---~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~~ 114 (241)
+.+++.+++.-...++.+|--...+|..+ +.+. ...+..+++.+..+|.|.|+.|-..|+.+...+|+.+
T Consensus 138 ~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 45566666554566666666555555554 3322 2346667778888999999999999999999999754
No 59
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=83.82 E-value=12 Score=31.04 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc-----hHHhhhHHHHhhc----CCchhhHHHHHHHHHHHHhhch----hhhHHHHHH
Q 026208 20 GDLAVKLSSLKQVRGILSSADPS-----LAAELFPYLVELQ----SSPESLVRKSLIETIEDIGLKA----MEHSSILMP 86 (241)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~-----ll~~~lp~vl~~~----~d~~~~vrk~~~~fiee~~~~~----~e~~~~~v~ 86 (241)
.|. .++..+-++-+-++++ |+ .+.+++|.++..- ..+. .+|.+-|+++..+|++. +.+-+++..
T Consensus 58 ~~l-~~L~~lm~~~~ALl~N-~~l~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~ 134 (196)
T 4atg_A 58 KEA-EVLKTCIALYFSLIKN-KHVFIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTYSRSYKTLAPRVLK 134 (196)
T ss_dssp TCH-HHHHHHHHHHHHHHHC-TTCCCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHhCccCchHHHHHHH
Confidence 455 4555554444444423 32 5578888888542 1222 89999999999999764 678999999
Q ss_pred HHHHhhcCC--ChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHHHHHHHHHHH
Q 026208 87 VLLAFLRDG--DSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEELWTWMVRFK 143 (241)
Q Consensus 87 ~L~~LL~d~--d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K 143 (241)
++..-+-|+ +..+.=-||.+.+.+=+.+.+.+-. +.....|+.+-+.|
T Consensus 135 tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~ll---------P~l~~~~~~~~~~~ 184 (196)
T 4atg_A 135 TLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIR---------EHAEEYKRTIGKKK 184 (196)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHH---------HHHHHHHHHTCCHH
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhh---------cCHHHHHHHHHHHH
Confidence 999888775 4566667777777777766644432 33555555544433
No 60
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=81.86 E-value=15 Score=31.03 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChH
Q 026208 19 HGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSG 98 (241)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~ 98 (241)
++|...|+..|+=.--+- .+.|....-|||.++.+-+|++--||-..++-+..+....+. +.+++..-..=++|...-
T Consensus 155 skd~~Dkl~aLnFi~alG-en~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-lRkii~~kl~e~~D~S~l 232 (253)
T 2db0_A 155 SKNREDKLTALNFIEAMG-ENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK-LRKVVIKRLEELNDTSSL 232 (253)
T ss_dssp CSSHHHHHHHHHHHHTCC-TTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-HHHHHHHHHHHCCCSCHH
T ss_pred CCChHHHHHHHHHHHHHh-ccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-HHHHHHHHHHHhcCcHHH
Confidence 577778998888776655 477888899999999999999999999999999999888877 555555555557788888
Q ss_pred HHHHHHHhhhh
Q 026208 99 VAGKSIVCGTN 109 (241)
Q Consensus 99 V~K~aI~~~t~ 109 (241)
|.|.+..+.+-
T Consensus 233 v~~~V~egL~r 243 (253)
T 2db0_A 233 VNKTVKEGISR 243 (253)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887766554
No 61
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=81.43 E-value=16 Score=33.16 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc----hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH-
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS----LAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS- 81 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~----ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~- 81 (241)
+.++.+|+. +|...|......++.+..++++. .-.+.+|.++++-.+++.++++..+.-+..++...++.-
T Consensus 5 ~~lv~~L~s----~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 5 PKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp HHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 456666653 45568999999999988654441 125678888888667788899999888888775433321
Q ss_pred ----HHHHHHHHHhhc-CCChHHHHHHHHhhhhh
Q 026208 82 ----SILMPVLLAFLR-DGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 82 ----~~~v~~L~~LL~-d~d~~V~K~aI~~~t~l 110 (241)
.-.++.|..+|+ +.++.+.+.++-+..++
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nL 114 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL 114 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 234677888888 77888887777666544
No 62
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=78.51 E-value=5.4 Score=34.61 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=27.4
Q ss_pred HHHHHhhcCCChHHHHHHHHhhhhhhHHHH
Q 026208 86 PVLLAFLRDGDSGVAGKSIVCGTNFFCRVL 115 (241)
Q Consensus 86 ~~L~~LL~d~d~~V~K~aI~~~t~lY~~~l 115 (241)
+.+..+++|.|..|-.-|+.|...+|+.+=
T Consensus 210 ~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 210 KTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 778888999999999999999999998764
No 63
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=77.23 E-value=10 Score=32.89 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhc-CCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch
Q 026208 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSS-ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA 77 (241)
Q Consensus 5 ~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~-~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~ 77 (241)
...+|+++|++-..+.|-..|.--|+.+-|+.-. .||+.+..++.++=++-...++.++++..+.++++....
T Consensus 147 ~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 147 DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 3568889999988779988999999999999864 488999999999988866779999999999999987643
No 64
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=71.53 E-value=30 Score=32.61 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCc--hH--HhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchh--h
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPS--LA--AELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAM--E 79 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~--ll--~~~lp~vl~~-~~d~~~~vrk~~~~fiee~~~~~~--e 79 (241)
..++.+|+ ..|...|...+..+..+..+.... +. ++.++.++.+ ..+.+.++|+..+..|...+.... +
T Consensus 17 ~~Lv~lL~----~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 17 PELTKLLN----DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp HHHHHHHT----CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHc----CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 34455554 567778888888888888543321 11 3567777765 445578999999999987665321 1
Q ss_pred --hHHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 80 --HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 80 --~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
.-..+++.|..+|.++++.|.+.|+.+..++-
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~ 126 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 126 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 11246788889999999999999998888774
No 65
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=66.73 E-value=36 Score=30.37 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=59.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc--h-HHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh---h--HHHHHHHHHHh
Q 026208 20 GDLAVKLSSLKQVRGILSSADPS--L-AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---H--SSILMPVLLAF 91 (241)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~--l-l~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e---~--~~~~v~~L~~L 91 (241)
+|...+......++++..+.++. + -.+.+|.++++-.+++.++++..+..+..++....+ . -..+++.|..+
T Consensus 72 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 46666777777777765432211 1 135677888876677789999999999988764322 1 24577888899
Q ss_pred hcCCChHHHHHHHHhhh
Q 026208 92 LRDGDSGVAGKSIVCGT 108 (241)
Q Consensus 92 L~d~d~~V~K~aI~~~t 108 (241)
+.++++.+...+..+.+
T Consensus 152 l~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 152 LNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp GGCCCHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 99888777665544443
No 66
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=65.05 E-value=31 Score=32.43 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=60.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCc--hH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh----h-HHHHHHHHHHh
Q 026208 20 GDLAVKLSSLKQVRGILSSADPS--LA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAME----H-SSILMPVLLAF 91 (241)
Q Consensus 20 ~d~~~kl~~L~q~relll~~~p~--ll-~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e----~-~~~~v~~L~~L 91 (241)
.|...+......++.+..+.++. +. .+.+|.++++-.+++..+|+..+..|..++....+ + -..+++.|..+
T Consensus 69 ~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l 148 (644)
T 2z6h_A 69 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH
Confidence 46667777777777665432211 11 35678888876677889999999999998764322 2 24678888899
Q ss_pred hcCCChHHHHHHHHhhhh
Q 026208 92 LRDGDSGVAGKSIVCGTN 109 (241)
Q Consensus 92 L~d~d~~V~K~aI~~~t~ 109 (241)
|.++++.+...+..+.++
T Consensus 149 L~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 149 LNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp GGCCCHHHHHHHHHHHHH
T ss_pred HCcCCHHHHHHHHHHHHH
Confidence 998888766655444443
No 67
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=64.97 E-value=66 Score=28.60 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhcCC-CchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhhH-----HHHHHHHHHhhcC--C
Q 026208 24 VKLSSLKQVRGILSSAD-PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEHS-----SILMPVLLAFLRD--G 95 (241)
Q Consensus 24 ~kl~~L~q~relll~~~-p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~~-----~~~v~~L~~LL~d--~ 95 (241)
.+...+.-+..+.-+.. .....+++|.++.+-.+.+.++|...+..+...+...++.. ...++.|..+|.+ +
T Consensus 243 ~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC
Confidence 33444444444443221 12235677877777667788888888888888766433211 2245566666654 3
Q ss_pred ChHHHHHHHHhhhhh
Q 026208 96 DSGVAGKSIVCGTNF 110 (241)
Q Consensus 96 d~~V~K~aI~~~t~l 110 (241)
++.|...++.+.+++
T Consensus 323 ~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 323 REDITEPAICALRHL 337 (529)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467777777777665
No 68
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=63.87 E-value=27 Score=34.11 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCc--h--HHhhhHHHHhh-cCCchhhHHHHHHHHHHHHhhchh---h-hHHHHHHHHH
Q 026208 19 HGDLAVKLSSLKQVRGILSSADPS--L--AAELFPYLVEL-QSSPESLVRKSLIETIEDIGLKAM---E-HSSILMPVLL 89 (241)
Q Consensus 19 ~~d~~~kl~~L~q~relll~~~p~--l--l~~~lp~vl~~-~~d~~~~vrk~~~~fiee~~~~~~---e-~~~~~v~~L~ 89 (241)
..|...|...+..+..+..+.+.. + .+++++.++.+ ..+.+.++|+..+..|..++.... . .-..+++.|.
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv 240 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALV 240 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHH
Confidence 466667777777777766432110 1 13567776655 334578899999999988654321 1 1224778888
Q ss_pred HhhcCCChHHHHHHHHhhhhhh
Q 026208 90 AFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 90 ~LL~d~d~~V~K~aI~~~t~lY 111 (241)
.+|+++++.|.+.|+.+..++-
T Consensus 241 ~lL~~~~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 241 NMLGSPVDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999888773
No 69
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=63.50 E-value=59 Score=27.70 Aligned_cols=60 Identities=8% Similarity=0.197 Sum_probs=47.0
Q ss_pred HhhhHHHHh-hcCCchhhHHHHHHHHHHHHhh-chhhhHHHHHHHHHHhhcCCChHHHHHHHHhh
Q 026208 45 AELFPYLVE-LQSSPESLVRKSLIETIEDIGL-KAMEHSSILMPVLLAFLRDGDSGVAGKSIVCG 107 (241)
Q Consensus 45 ~~~lp~vl~-~~~d~~~~vrk~~~~fiee~~~-~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~ 107 (241)
++.||-+.+ +..|.+=.||-+++..+.+.|. .+++- +++.+.....|+++-|-|-|+.+.
T Consensus 102 ~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---~l~~~~~W~~d~n~~VRR~Ase~~ 163 (240)
T 3l9t_A 102 KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---ALPIIDEWLKSSNLHTRRAATEGL 163 (240)
T ss_dssp HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---THHHHHHHHHCSSHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---HHHHHHHHhcCCCHHHHHHHHHhh
Confidence 678887776 7778888999999999999986 67774 334566677899999988888775
No 70
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=61.98 E-value=80 Score=31.25 Aligned_cols=102 Identities=7% Similarity=0.036 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch-------
Q 026208 5 SRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA------- 77 (241)
Q Consensus 5 ~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~------- 77 (241)
..+++.++|.++.. +|...+ .-.+++++ .+.|.+...++. ++. ..+.+.++|.+.+-.+....+++
T Consensus 3 d~~~l~~~L~~~~s-pd~~~r--Ae~~L~~~--~~~p~~~~~L~~-il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~ 75 (960)
T 1wa5_C 3 DLETVAKFLAESVI-ASTAKT--SERNLRQL--ETQDGFGLTLLH-VIA-STNLPLSTRLAGALFFKNFIKRKWVDENGN 75 (960)
T ss_dssp HHHHHHHHHHHTTS-GGGHHH--HHHHHHHH--HTSTTHHHHHHH-HHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSC
T ss_pred cHHHHHHHHHHhcC-CCHHHH--HHHHHHHh--hcCCCHHHHHHH-HHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 56789999998665 455444 33444443 467754433333 221 23345678888877776654321
Q ss_pred ----hhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHH
Q 026208 78 ----MEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (241)
Q Consensus 78 ----~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (241)
++--..+=..|...+.++++.|.+++-++.+.|.+.
T Consensus 76 ~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~ 115 (960)
T 1wa5_C 76 HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADS 115 (960)
T ss_dssp BSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 122222333444444455677777777777776554
No 71
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=60.58 E-value=18 Score=35.44 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=50.6
Q ss_pred CchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh---h--HHHHHHHHHHhhcC-CChHHHHHHHHhhhhh
Q 026208 41 PSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---H--SSILMPVLLAFLRD-GDSGVAGKSIVCGTNF 110 (241)
Q Consensus 41 p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e---~--~~~~v~~L~~LL~d-~d~~V~K~aI~~~t~l 110 (241)
+.+....+|.++.+-.+.+..+|+..+..|..++..... . ...+++.|..+|++ +++.+.+.|+.+..++
T Consensus 145 ~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L 220 (780)
T 2z6g_A 145 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220 (780)
T ss_dssp HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344577888888775577889999999999988764321 1 23567777777764 4888888888887664
No 72
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=59.71 E-value=64 Score=27.49 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHH---------HHHHH--------hcCCCchHHhhhHHHHhhcCCchhhHHHHHHHH
Q 026208 7 DQALSLLAAANNHGDLAVKLSSLKQ---------VRGIL--------SSADPSLAAELFPYLVELQSSPESLVRKSLIET 69 (241)
Q Consensus 7 ~~v~~lln~A~~~~d~~~kl~~L~q---------~rell--------l~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~f 69 (241)
--++.+|.++ . .+ .+.+..++. +||.+ ...+| +..++.+.+...|++..|||++++.
T Consensus 89 ~~Av~lLg~~-~-~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---e~~l~~~~~W~~d~n~~VRR~Ase~ 162 (240)
T 3l9t_A 89 MYAVFLFGYL-S-KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---KKALPIIDEWLKSSNLHTRRAATEG 162 (240)
T ss_dssp HHHHHHHHHT-T-TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT---TTTHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHhc-c-Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH---HHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 3446677776 2 33 467777766 55553 22455 2355666667779999999999988
Q ss_pred HHHHhhc--hhhhHHHHHHHHHHhhcCCChHHHHHHHHhhh---hhhHHHHHHHhhhhh
Q 026208 70 IEDIGLK--AMEHSSILMPVLLAFLRDGDSGVAGKSIVCGT---NFFCRVLEEITMQFR 123 (241)
Q Consensus 70 iee~~~~--~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t---~lY~~~l~~~~~~~~ 123 (241)
+.--|+. ..+.-..+++.|..+..|++-.|.|.+--... --+|......+.+|.
T Consensus 163 ~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~w~ 221 (240)
T 3l9t_A 163 LRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKNWK 221 (240)
T ss_dssp TCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred hHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhh
Confidence 6432322 11233345566666778888888776655543 345666666666664
No 73
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=58.96 E-value=1.4e+02 Score=29.19 Aligned_cols=105 Identities=10% Similarity=-0.021 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch-----h
Q 026208 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA-----M 78 (241)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~-----~ 78 (241)
..-+++.++|+.....+|...|-+.-.+++++ .+.|... .++..++. .+.+.++|-|.+..+....+++ +
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~--~~~p~~~-~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~ 95 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQA--QVSPQAW-HFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPT 95 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHSTTHH-HHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCG
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hcCHHHH-HHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCH
Confidence 45677888888866666765555444444442 2466433 23444543 4567899999999998765432 1
Q ss_pred hhHHHHHHHHHHhhcC---CChHHHHHHHHhhhhhhHH
Q 026208 79 EHSSILMPVLLAFLRD---GDSGVAGKSIVCGTNFFCR 113 (241)
Q Consensus 79 e~~~~~v~~L~~LL~d---~d~~V~K~aI~~~t~lY~~ 113 (241)
+-...+-..|..++.. ..+.|..+..++.+.|.+.
T Consensus 96 ~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~ 133 (963)
T 2x19_B 96 DQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALS 133 (963)
T ss_dssp GGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 2122222222222222 3467777777777766654
No 74
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=53.20 E-value=30 Score=30.63 Aligned_cols=66 Identities=11% Similarity=0.056 Sum_probs=46.1
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh---H--HHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH---S--SILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 46 ~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~---~--~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
+.+|.++++-.+.+.++++-.+..|..++...++. + .-+++.|..||++.++.+.+.|..+..++.
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45677777755677788888888888877543332 2 234778888888888888877776665553
No 75
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=52.29 E-value=71 Score=31.86 Aligned_cols=175 Identities=7% Similarity=-0.025 Sum_probs=107.2
Q ss_pred ChHHHHHHHHHHHHHHhcCCC---chH-HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchh---hhH--HHHHHHHHHh
Q 026208 21 DLAVKLSSLKQVRGILSSADP---SLA-AELFPYLVELQSSPESLVRKSLIETIEDIGLKAM---EHS--SILMPVLLAF 91 (241)
Q Consensus 21 d~~~kl~~L~q~relll~~~p---~ll-~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~---e~~--~~~v~~L~~L 91 (241)
+...+.+.|..+..|.-..+. ... ...+|.++++..+.+..+|+-.++.|..++.... ++. ...++.|..|
T Consensus 594 ~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~L 673 (810)
T 3now_A 594 TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL 673 (810)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHH
Confidence 333456677777777743211 112 3578888888777788999999999988765332 233 3577888899
Q ss_pred hcCCChHHHHHHHHhhhhhhH---HHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhH
Q 026208 92 LRDGDSGVAGKSIVCGTNFFC---RVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLET 168 (241)
Q Consensus 92 L~d~d~~V~K~aI~~~t~lY~---~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~ 168 (241)
+..++..+.|.|..+.+++-. ..- +.+... . ..-..++. ++.+++.++|-.|...+..
T Consensus 674 L~s~d~~vq~~Aa~ALanLt~~s~~~~-----~~ii~~-------~------g~I~~Lv~-LL~s~d~~vq~~A~~aL~N 734 (810)
T 3now_A 674 CEDEDEETATACAGALAIITSVSVKCC-----EKILAI-------A------SWLDILHT-LIANPSPAVQHRGIVIILN 734 (810)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHCHHHH-----HHHHTS-------T------THHHHHHH-HHTCSSHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHH-----HHHHHH-------c------CCHHHHHH-HHCCCCHHHHHHHHHHHHH
Confidence 999999999999998888754 222 222210 0 01124455 6688999999988877765
Q ss_pred HhhhccCCCCCcccccccCCCccccccccCCCCCCC-----ChhhHHHHHHHHHHHHHHHHh
Q 026208 169 HVLLFTSDSNDFENFTKEGSKQTFNISWLSGGHPFL-----DPVSLTSEANRMLGTLMDLLQ 225 (241)
Q Consensus 169 vIl~qT~~~~d~~~~~~~~~~~d~sl~~vP~~Hp~L-----~~~~Le~Ea~~lLd~LL~~l~ 225 (241)
+.- .+ ++. ... -...+-+|+=..++ +..+.-+-|.+.|+.++++=.
T Consensus 735 L~~-~s-----~e~-~~~----l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 735 MIN-AG-----EEI-AKK----LFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp HHT-TC-----HHH-HHH----HHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHh-CC-----HHH-HHH----HHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 432 11 111 010 12223344444444 235677778888888887654
No 76
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=51.86 E-value=38 Score=28.34 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=44.3
Q ss_pred hhHHHHhhcCCchh--hHHHHHHHHHHHHhhchhh---h--HHHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 47 LFPYLVELQSSPES--LVRKSLIETIEDIGLKAME---H--SSILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 47 ~lp~vl~~~~d~~~--~vrk~~~~fiee~~~~~~e---~--~~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
-+|.++++-.+++. +++...+.+|.-.|+.+++ . -...++.|..+|+.+++.+.+.|.-+..+|
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nL 79 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNL 79 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35666665444444 7887788888777765432 1 234678888999988898888888887776
No 77
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=49.54 E-value=24 Score=32.01 Aligned_cols=64 Identities=16% Similarity=0.056 Sum_probs=44.4
Q ss_pred hHHHHhhcCCchhhHHHHHHHHHHHHhhchhh-----hHHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 48 FPYLVELQSSPESLVRKSLIETIEDIGLKAME-----HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 48 lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e-----~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
+|.++.+-.+++.+++...+..|..+|..+++ .-...++.|..+|+++++.+.+.|..+..++.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa 72 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34455443355677888888888888754332 12345677888888888888888888887775
No 78
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=47.50 E-value=2.2e+02 Score=28.24 Aligned_cols=132 Identities=9% Similarity=0.071 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhcCCC-------chHH--hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchh----hhH----HH---
Q 026208 24 VKLSSLKQVRGILSSADP-------SLAA--ELFPYLVELQSSPESLVRKSLIETIEDIGLKAM----EHS----SI--- 83 (241)
Q Consensus 24 ~kl~~L~q~relll~~~p-------~ll~--~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~----e~~----~~--- 83 (241)
++.+.|..+.+|+...++ .++. +.+|.+.++-.+.+..+||-.++.|.-.+.... ++. ++
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence 577888888888865421 1454 488888888777888999999888877653222 221 22
Q ss_pred HHHHHHHhhcCCChHHHHHHHHhhhhh---hHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHhcc-CCCCchH
Q 026208 84 LMPVLLAFLRDGDSGVAGKSIVCGTNF---FCRVLEEITMQFRWHGKVERWLEELWTWMVRFKDAVFAIALE-PGLVGTK 159 (241)
Q Consensus 84 ~v~~L~~LL~d~d~~V~K~aI~~~t~l---Y~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~Il~~~~d-~~n~Gvr 159 (241)
-++.|..|++.+|..+.+.|.-+.+++ ++.+- +++... . ..-+.++.++-+ .+++|+|
T Consensus 655 rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia-----~~ll~~------~-------~gi~~Ll~lL~~~~~~~~l~ 716 (778)
T 3opb_A 655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA-----KELLTK------K-------ELIENAIQVFADQIDDIELR 716 (778)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH-----HHHTTC------H-------HHHHHHHHHHHHTTTCHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH-----HHHHHc------c-------ccHHHHHHHHhccCCCHHHH
Confidence 266787888888999988887777665 56666 333321 1 233344442222 4899999
Q ss_pred HHHHHHHhHHhhhc
Q 026208 160 LLALKFLETHVLLF 173 (241)
Q Consensus 160 ~~aiKF~e~vIl~q 173 (241)
-.++.++--++-..
T Consensus 717 ~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 717 QRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99998887776444
No 79
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=45.80 E-value=70 Score=31.93 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=49.6
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-h--hh-hH--HHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLK-A--ME-HS--SILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 46 ~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~-~--~e-~~--~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
+.+|.++.+-...+..+|+-.+..|.-++.. . .+ .+ ...++.|..||.++|..+.++|..+..++-
T Consensus 665 g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 665 DRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp SHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3556666665566788999999999887652 1 22 22 358889999999999999999999988764
No 80
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=45.53 E-value=40 Score=32.28 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=54.5
Q ss_pred CCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh-----HHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 40 DPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH-----SSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 40 ~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~-----~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
+..+-+.-+|.++++-.+.+.+++...+..|..+|+.+.+. -...++.|..+|+.+++.|...|+-+..+|=
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS 118 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 44455666788887766677889999999998888754332 2346788999999999999988888887653
No 81
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=44.64 E-value=1.5e+02 Score=30.32 Aligned_cols=102 Identities=12% Similarity=0.108 Sum_probs=59.0
Q ss_pred cchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHh--cCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhhh
Q 026208 3 AVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILS--SADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAMEH 80 (241)
Q Consensus 3 ~~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll--~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e~ 80 (241)
.+.+++++++|.+.....+.... ..-.-+=-++. ..+...+..++..+.+ +.+..+||+.+-=|..++..+++.
T Consensus 467 GS~~eev~e~L~~~L~dd~~~~~-~~AalALGli~vGTgn~~ai~~LL~~~~e---~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 467 GSANIEVYEALKEVLYNDSATSG-EAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp TCCCHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred CCCCHHHHHHHHHHHhcCCHHHH-HHHHHHHhhhhcccCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHhhhCCChHH
Confidence 35567778888777765442111 11111112221 1344444555554443 345689999999888888888887
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 81 SSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 81 ~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
+..++..|. .+++|.|-..++.+.+..|
T Consensus 543 ~~~li~~L~---~~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 543 ADDLITKML---ASDESLLRYGGAFTIALAY 570 (963)
T ss_dssp GHHHHHHHH---HCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---hCCCHHHHHHHHHHHHHHh
Confidence 776665544 5677777666666655444
No 82
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=44.47 E-value=48 Score=30.56 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=47.2
Q ss_pred HhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh---hH--HHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 45 AELFPYLVELQSSPESLVRKSLIETIEDIGLKAME---HS--SILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 45 ~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e---~~--~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
.+.+|.++++-.+.+.++++..+..|..++...++ .+ .-+++.|..||...++.+.+.|..+..+|
T Consensus 378 ~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448 (458)
T ss_dssp TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35677777776677778999998888887744333 22 23577888888888888888877776655
No 83
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=41.87 E-value=2.1e+02 Score=26.46 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHH--HHHHHHHHhh-chh-hhH---HHHHHHHHHhhcCCChHH
Q 026208 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKS--LIETIEDIGL-KAM-EHS---SILMPVLLAFLRDGDSGV 99 (241)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~--~~~fiee~~~-~~~-e~~---~~~v~~L~~LL~d~d~~V 99 (241)
.+|...-...+++||++...++.+++-+ .|-..-.|. ..+.||+++. ..+ ++. ..+...+..-+..+.-.|
T Consensus 265 ~qL~ycv~qf~eKDp~L~~~vi~~LLk~--WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqV 342 (449)
T 2npp_B 265 PQLAYCVVQFLEKDSTLTEPVVMALLKY--WPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQV 342 (449)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHh--CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 4666666666789999999999999764 443334443 3455555553 222 222 222223333345666677
Q ss_pred HHHHHHhh
Q 026208 100 AGKSIVCG 107 (241)
Q Consensus 100 ~K~aI~~~ 107 (241)
+.+|+...
T Consensus 343 AErAL~~w 350 (449)
T 2npp_B 343 AERALYYW 350 (449)
T ss_dssp HHHHHGGG
T ss_pred HHHHHHHH
Confidence 76665543
No 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=39.09 E-value=1.7e+02 Score=24.99 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhh---HHHHhhcCCchhhHHHHHHHHHHHHhhchhh
Q 026208 4 VSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELF---PYLVELQSSPESLVRKSLIETIEDIGLKAME 79 (241)
Q Consensus 4 ~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~l---p~vl~~~~d~~~~vrk~~~~fiee~~~~~~e 79 (241)
.+..++.+.+-++-.+.+.-.+.+.|..+..++-..... ....+ |.+..+-.|++..||.....-+.|+.+..-+
T Consensus 163 ~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 163 VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 345667777777778888889999999999988654444 35678 8888888899999999999999887654433
No 85
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=38.95 E-value=1.7e+02 Score=24.30 Aligned_cols=96 Identities=11% Similarity=0.119 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCCCh--HHHHHHHHHHHHHHhcCCCc---h-HHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh
Q 026208 6 RDQALSLLAAANNHGDL--AVKLSSLKQVRGILSSADPS---L-AAELFPYLVELQSSPESLVRKSLIETIEDIGLKAME 79 (241)
Q Consensus 6 ~~~v~~lln~A~~~~d~--~~kl~~L~q~relll~~~p~---l-l~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e 79 (241)
-+.++++|+ ++|. ..|.......+.+..++++. . -...+|.++++-.+++.++++..+.-|.-++...++
T Consensus 10 i~~lV~lL~----s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 10 LERAVSMLE----ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp HHHHHHTCC----SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhC----CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 344555553 3443 46777777777777655432 1 145678888886667889999999999887654332
Q ss_pred h-----HHHHHHHHHHhhc-CCChHHHHHHHH
Q 026208 80 H-----SSILMPVLLAFLR-DGDSGVAGKSIV 105 (241)
Q Consensus 80 ~-----~~~~v~~L~~LL~-d~d~~V~K~aI~ 105 (241)
. -.-.++.|..+|+ ..++.+.+.+.-
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~ 117 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITG 117 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHH
Confidence 1 2235777888887 467777777653
No 86
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=34.53 E-value=66 Score=32.30 Aligned_cols=70 Identities=10% Similarity=0.136 Sum_probs=43.0
Q ss_pred hHHhhhHHHHhhcC-----CchhhHHH---HHHHHHHHHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhH
Q 026208 43 LAAELFPYLVELQS-----SPESLVRK---SLIETIEDIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFC 112 (241)
Q Consensus 43 ll~~~lp~vl~~~~-----d~~~~vrk---~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~ 112 (241)
+++++++.++.+.. ++.+.+|. |+.+=+.+....+++++..+++.+...+.|.++.|.-.|..++.++-.
T Consensus 492 ~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 492 FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35555555544321 23444443 333323334456788999999998888888888887777666655443
No 87
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=34.25 E-value=15 Score=26.08 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.2
Q ss_pred cccccccCCCCCCCChhhHHHHHHH
Q 026208 191 TFNISWLSGGHPFLDPVSLTSEANR 215 (241)
Q Consensus 191 d~sl~~vP~~Hp~L~~~~Le~Ea~~ 215 (241)
.+.++.|..+|+||+...|++=..+
T Consensus 46 PIdi~~VkkDH~FLd~d~l~sL~RR 70 (81)
T 2h80_A 46 PINIVAVKNDHDFLEKDLVEPLCRR 70 (81)
T ss_dssp CSCHHHHHTSCCSSCSTTHHHHHHH
T ss_pred cccHHHhccCCCccCHHHHHHHHHH
Confidence 4777899999999999999886655
No 88
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=32.72 E-value=93 Score=27.39 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHhhchhh---hH---HHHHHHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 59 ESLVRKSLIETIEDIGLKAME---HS---SILMPVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 59 ~~~vrk~~~~fiee~~~~~~e---~~---~~~v~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
+.++++..+..|..+|+.+.+ .+ .-+++.|..+|+.+++.|...++.+..++
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL 154 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 154 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 468999999999998865432 22 34689999999998998888877766554
No 89
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=31.47 E-value=65 Score=28.59 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=70.3
Q ss_pred HHHHhcCCCchHHhhhHHHHhhc---CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcCC--ChHHHHHHHHhh
Q 026208 33 RGILSSADPSLAAELFPYLVELQ---SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRDG--DSGVAGKSIVCG 107 (241)
Q Consensus 33 relll~~~p~ll~~~lp~vl~~~---~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d~--d~~V~K~aI~~~ 107 (241)
-+.+.+.+|.|....++++-... .+.+..+.|-+.+.|.+..+...++...=+..|..++.-. ++.+..+|..-.
T Consensus 105 l~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly~~~~~d~~~k~Kvl~li 184 (315)
T 3qml_C 105 VEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVYERNNKDKQLQIKVLELI 184 (315)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 34444568888888888764432 1234478888888887765443323333344555555544 899999999888
Q ss_pred hhhhHHHHHHHhhhhhccCCccchHHHHHHHH-HHHHHHHHHHhccCCCCchHHHHHHHHhHHhhhcc
Q 026208 108 TNFFCRVLEEITMQFRWHGKVERWLEELWTWM-VRFKDAVFAIALEPGLVGTKLLALKFLETHVLLFT 174 (241)
Q Consensus 108 t~lY~~~l~~~~~~~~~~~~~~~~~~~~W~~m-~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vIl~qT 174 (241)
..+|..-.-..-..-+...+ ++ .+.|..= ...-+.+-. ++++ ...-..+.-||...++=+.+
T Consensus 185 ~d~f~~~~~~~~~~~~~~~k--R~-~e~~~~~~q~w~~~~q~-~iq~-k~~dE~~~r~fF~~L~~ik~ 247 (315)
T 3qml_C 185 SKILKADMYENDDTNLILFK--RN-AENWSSNLQEWANEFQE-MVQN-KSIDELHTRTFFDTLYNLKK 247 (315)
T ss_dssp HHHHHHHTTC----------------------CHHHHHHHHH-HHTC-TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHcccccccccccccchhh--hc-ccccCchHHHHHHHHHH-HHhc-cccCHHHHHHHHHHHHHHHH
Confidence 88885211000000000000 11 1112211 111122223 3333 33356788889999888887
No 90
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=30.34 E-value=66 Score=30.89 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=42.4
Q ss_pred hhhHHHHhhcCCchhhHHHHHHHHHHHHhhchhh-----hHHHHH-HHHHHhhcCCChHHHHHHHHhhhhh
Q 026208 46 ELFPYLVELQSSPESLVRKSLIETIEDIGLKAME-----HSSILM-PVLLAFLRDGDSGVAGKSIVCGTNF 110 (241)
Q Consensus 46 ~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~e-----~~~~~v-~~L~~LL~d~d~~V~K~aI~~~t~l 110 (241)
.++| +++--.+++++.|.|.+.-|.+++. +++ .-...+ ..+..+|.|.+..|...|.-++.+|
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL 103 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVL 103 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3455 4433236778899999999998875 222 122233 3466778999999988888777666
No 91
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=29.64 E-value=1.9e+02 Score=22.37 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhc---CCChHHHHHHHHHHHHHHh
Q 026208 7 DQALSLLAAANN---HGDLAVKLSSLKQVRGILS 37 (241)
Q Consensus 7 ~~v~~lln~A~~---~~d~~~kl~~L~q~relll 37 (241)
|.++.-|+.|.. .+|.++|-..+.++++++.
T Consensus 31 dgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~ 64 (145)
T 1vh6_A 31 NGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQ 64 (145)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 445666777764 3889999999999999884
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=29.43 E-value=2.5e+02 Score=27.51 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=42.0
Q ss_pred chHHhhhHHHHhhcC-CchhhHHHHHHHHHHHHh---hchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 42 SLAAELFPYLVELQS-SPESLVRKSLIETIEDIG---LKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 42 ~ll~~~lp~vl~~~~-d~~~~vrk~~~~fiee~~---~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
..++.+++-+.++.. |.++.||.-....+...+ ..+++++..+++.|...| | +.|...|..++..+-
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~ 571 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELC 571 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHH
Confidence 456777774445542 557788888877776543 356788999999888777 4 666666655555443
No 93
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=29.19 E-value=3e+02 Score=24.37 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=63.0
Q ss_pred CCchhhHHHHHHHHHHHHhhchhhhHHHHHHHHHHhhcC-CChHHHHHHHHhhhhhhHHHHHHHhhhhhccCCccchHHH
Q 026208 56 SSPESLVRKSLIETIEDIGLKAMEHSSILMPVLLAFLRD-GDSGVAGKSIVCGTNFFCRVLEEITMQFRWHGKVERWLEE 134 (241)
Q Consensus 56 ~d~~~~vrk~~~~fiee~~~~~~e~~~~~v~~L~~LL~d-~d~~V~K~aI~~~t~lY~~~l~~~~~~~~~~~~~~~~~~~ 134 (241)
..++.++-.-+..++...|.-.-|-+- +...+.| ..+.++-+.-.-.+..|..+.+.+. .. .....
T Consensus 194 ~~~~~Dls~~~l~~L~~l~LAQAQE~~-----~~Kai~~~~k~~liAkLa~~~~~~Y~~A~~~l~-----~~---~~~~~ 260 (380)
T 3c3r_A 194 REPTVDISPDTVGTLSLIMLAQAQEVF-----FLKATRDKMKDAIIAKLANQAADYFGDAFKQCQ-----YK---DTLPK 260 (380)
T ss_dssp SCCCTTTSHHHHHHHHHHHHHHHHHHH-----HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHT-----TC---CCSCT
T ss_pred CCCCccCCHHHHHHHHHHHHHHHHHHH-----HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHc-----cc---ccccH
Confidence 455666777777777777654433211 1111223 3445544444455889999995553 11 33446
Q ss_pred HHHHHHHHHHHHHHH---------hccCCCCchHHHHHHHHhHHh
Q 026208 135 LWTWMVRFKDAVFAI---------ALEPGLVGTKLLALKFLETHV 170 (241)
Q Consensus 135 ~W~~m~~~K~~Il~~---------~~d~~n~Gvr~~aiKF~e~vI 170 (241)
.|..+..+|.....- ..+.+..|..++.++..+..+
T Consensus 261 ~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l 305 (380)
T 3c3r_A 261 EVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELI 305 (380)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 899999999876532 225788999999888776653
No 94
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=26.80 E-value=93 Score=30.61 Aligned_cols=106 Identities=11% Similarity=0.059 Sum_probs=47.8
Q ss_pred CccchHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhch---
Q 026208 1 MAAVSRDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKA--- 77 (241)
Q Consensus 1 m~~~~~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~--- 77 (241)
|...+-+++.+++..... +|...|-+.-..+++ +.+.|... .++..++ +.+.+.++|-|.+..+....+++
T Consensus 1 m~~~d~~~l~~~l~~~~~-~d~~~r~~A~~~L~~--~~~~p~~w-~~~~~lL--~~~~~~~vr~~aa~~L~~~i~~~w~~ 74 (971)
T 2x1g_F 1 MEPIDIARLEEAVVSFYR-SNSQNQAITHEWLTD--AEASPQAW-QFSWQLM--QLGKSQEVQFFGAITLHSKLMKHWHE 74 (971)
T ss_dssp ----------CTHHHHHT-STTTC----CHHHHH--TTTSTHHH-HHHHHHT--CTTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CChhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHH--HHcCHHHH-HHHHHHH--hcCCcHHHHHHHHHHHHHHHHccHhh
Confidence 333344556666666443 443334333333333 13566433 2444454 34567899999999998765432
Q ss_pred --hh----hHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhHH
Q 026208 78 --ME----HSSILMPVLLAFLRDGDSGVAGKSIVCGTNFFCR 113 (241)
Q Consensus 78 --~e----~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY~~ 113 (241)
++ +=..++..+...- ...+.|..+..++.+.+...
T Consensus 75 l~~~~~~~ir~~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~ 115 (971)
T 2x1g_F 75 VPPENREELKQKILESIVRFA-GGPKIVLNRLCISLGAYIVH 115 (971)
T ss_dssp CCGGGHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 11 1222222222221 22467777777777665443
No 95
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=26.71 E-value=15 Score=26.54 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=20.9
Q ss_pred cccccccCCCCCCCChhhHHHHHHH
Q 026208 191 TFNISWLSGGHPFLDPVSLTSEANR 215 (241)
Q Consensus 191 d~sl~~vP~~Hp~L~~~~Le~Ea~~ 215 (241)
.+.++.|..+|+||+...|++=..+
T Consensus 48 PIdi~~VkkDH~FLd~d~l~sL~RR 72 (91)
T 2dky_A 48 PIDISLVKREHDFLDRDAIEALCRR 72 (91)
T ss_dssp SCCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cccHHHhccCCCccCHHHHHHHHHH
Confidence 4777899999999999999876655
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=24.43 E-value=2.9e+02 Score=22.54 Aligned_cols=152 Identities=10% Similarity=0.108 Sum_probs=88.1
Q ss_pred HhhcCCChHHHHHHHHHHHHHHhcCCCc--------hHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhc-------h--
Q 026208 15 AANNHGDLAVKLSSLKQVRGILSSADPS--------LAAELFPYLVELQSSPESLVRKSLIETIEDIGLK-------A-- 77 (241)
Q Consensus 15 ~A~~~~d~~~kl~~L~q~relll~~~p~--------ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~-------~-- 77 (241)
+=..+.+=.++.+.+.++++++-..... .+..+.+-+-..-.|.+..|..-..+++...+.. .
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 3344566677888888888887532111 1222233222334588888888777777765431 1
Q ss_pred -hhhHHHHHHHHHH-hhcCCChHHHHHHHHhhhhhh------HHHHHHHhhhhhccCCccchHHHHHHHHHHHHHH----
Q 026208 78 -MEHSSILMPVLLA-FLRDGDSGVAGKSIVCGTNFF------CRVLEEITMQFRWHGKVERWLEELWTWMVRFKDA---- 145 (241)
Q Consensus 78 -~e~~~~~v~~L~~-LL~d~d~~V~K~aI~~~t~lY------~~~l~~~~~~~~~~~~~~~~~~~~W~~m~~~K~~---- 145 (241)
..++..+++.|.. .+.|..+.+...++.++..+. ..+++.+.. + ..++.+.-...+..++..+=..
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~-~-l~~Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIP-F-FEKKLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGG-G-GGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-H-HhccCHHHHHHHHHHHHHHHHHhCCC
Confidence 2345555665554 366777887777776664442 234444432 2 2344556666777777654211
Q ss_pred --------------HHHHhccCCCCchHHHHHHHHhHH
Q 026208 146 --------------VFAIALEPGLVGTKLLALKFLETH 169 (241)
Q Consensus 146 --------------Il~~~~d~~n~Gvr~~aiKF~e~v 169 (241)
+.. .+++.+.+||-+|++++-.+
T Consensus 174 ~~~~k~~l~~i~~~l~k-~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 174 NVNVQTFLPELLKHVPQ-LAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp TCCHHHHHHHHGGGHHH-HHTCSSHHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHH
Confidence 122 45788999999999988554
No 97
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.09 E-value=2.6e+02 Score=21.85 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhh
Q 026208 6 RDQALSLLAAANNHGDLAVKLSSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGL 75 (241)
Q Consensus 6 ~~~v~~lln~A~~~~d~~~kl~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~ 75 (241)
..++.+++++=-.++|..|=+..++ |+ +.|.+.+.|+-.+++.+.|+...-|..++.++...+.
T Consensus 10 ~kk~~~ii~EYf~~~D~~Ea~~~l~---eL---~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 10 EKTLTPIIQEYFEHGDTNEVAEMLR---DL---NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHH---HH---TCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH---Hh---CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3466777887777788765555554 42 3677888999988888888888888888888887653
No 98
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=23.84 E-value=84 Score=32.01 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=43.6
Q ss_pred hHHhhhHHHHhhcC-----CchhhHHHHHHHHHH---HHhhchhhhHHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 43 LAAELFPYLVELQS-----SPESLVRKSLIETIE---DIGLKAMEHSSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 43 ll~~~lp~vl~~~~-----d~~~~vrk~~~~fie---e~~~~~~e~~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
++++++|.++.+-. |+...||.-++-.++ +-...+++++..++..|...+.|+.|.|.-.|..++.++-
T Consensus 492 ~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~ 568 (1023)
T 4hat_C 492 FVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIV 568 (1023)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 55666666666532 244456643333333 3345688999999988888888888877766666554443
No 99
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=23.21 E-value=55 Score=21.92 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCchHHhhhHHH
Q 026208 28 SLKQVRGILSSADPSLAAELFPYL 51 (241)
Q Consensus 28 ~L~q~relll~~~p~ll~~~lp~v 51 (241)
++.+.|+++ ..+|++++.++..+
T Consensus 12 qf~~lR~~v-q~NP~~L~~lLqql 34 (61)
T 2f4m_B 12 QFQQMRQII-QQNPSLLPALLQQI 34 (61)
T ss_dssp HHHHHHHHH-HHCGGGHHHHHHHH
T ss_pred HHHHHHHHH-HHCHHHHHHHHHHH
Confidence 567788888 58998777777754
No 100
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=22.10 E-value=2.5e+02 Score=26.20 Aligned_cols=37 Identities=16% Similarity=0.026 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHhHHh
Q 026208 132 LEELWTWMVRFKDAVFAIALEPGLVGTKLLALKFLETHV 170 (241)
Q Consensus 132 ~~~~W~~m~~~K~~Il~~~~d~~n~Gvr~~aiKF~e~vI 170 (241)
-....+.+ ..|.+|.+ +..++|.-||=.|++-+|+++
T Consensus 439 gr~i~~~l-g~K~~VM~-Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 439 SIDVLDKT-GGKADIME-LLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHH-SHHHHHHH-HTSCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHc-CcHHHHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence 45566665 35999999 669999999999999999975
No 101
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=21.86 E-value=4.1e+02 Score=24.06 Aligned_cols=81 Identities=16% Similarity=0.120 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCCchHHhhhHHHHhhcCCchhhHH--HHHHHHHHHHhhc-hh-hhH---HHHHHHHHHhhcCCChHH
Q 026208 27 SSLKQVRGILSSADPSLAAELFPYLVELQSSPESLVR--KSLIETIEDIGLK-AM-EHS---SILMPVLLAFLRDGDSGV 99 (241)
Q Consensus 27 ~~L~q~relll~~~p~ll~~~lp~vl~~~~d~~~~vr--k~~~~fiee~~~~-~~-e~~---~~~v~~L~~LL~d~d~~V 99 (241)
.+|...-...++|||++...++.+++-+ .|-+.-. -...+.||++... .+ ++. ..+...+..-+..+.-.|
T Consensus 277 ~qL~ycv~qf~eKDp~L~~~vi~~LLk~--WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqV 354 (392)
T 2jak_A 277 PQLAYCVVQFLEKDSTLTEPVVMALLKY--WPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQV 354 (392)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHS--SCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHh--CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 4566666666789999999999998764 3322222 2344556665532 22 222 222223333345666677
Q ss_pred HHHHHHhhhh
Q 026208 100 AGKSIVCGTN 109 (241)
Q Consensus 100 ~K~aI~~~t~ 109 (241)
+.||+....+
T Consensus 355 AErAL~~wnN 364 (392)
T 2jak_A 355 AERALYYWNN 364 (392)
T ss_dssp HHHHHGGGGC
T ss_pred HHHHHHHhCc
Confidence 7776554443
No 102
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=21.65 E-value=1.6e+02 Score=29.45 Aligned_cols=59 Identities=14% Similarity=0.038 Sum_probs=40.4
Q ss_pred CCCchHHhhhHHHHhhcCCchhhHHHHHHHHHHHHhhchh------------hhHHHHHHHHHHhhcCCCh
Q 026208 39 ADPSLAAELFPYLVELQSSPESLVRKSLIETIEDIGLKAM------------EHSSILMPVLLAFLRDGDS 97 (241)
Q Consensus 39 ~~p~ll~~~lp~vl~~~~d~~~~vrk~~~~fiee~~~~~~------------e~~~~~v~~L~~LL~d~d~ 97 (241)
.+|.+++..++.+++.-.+++..||.-.+.-+..+|.... .++..++..+..++.+-+.
T Consensus 533 ~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~ 603 (1049)
T 3m1i_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQP 603 (1049)
T ss_dssp HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 4677778888888776667778888888877666654321 4567777777777765443
No 103
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=20.90 E-value=3e+02 Score=26.76 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=41.3
Q ss_pred chhhHHHHHHHHHHHHhhchhh------h-HHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 026208 58 PESLVRKSLIETIEDIGLKAME------H-SSILMPVLLAFLRDGDSGVAGKSIVCGTNFF 111 (241)
Q Consensus 58 ~~~~vrk~~~~fiee~~~~~~e------~-~~~~v~~L~~LL~d~d~~V~K~aI~~~t~lY 111 (241)
..+++|+...+|+..++...+. . +..+++.+...++..++.++|.+......+.
T Consensus 785 ~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~ 845 (963)
T 2x19_B 785 DHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELL 845 (963)
T ss_dssp TCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHG
T ss_pred cCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3589999999999988754432 2 6777777777788889999998887776554
No 104
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=20.65 E-value=40 Score=23.39 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCchHHhhhHHH
Q 026208 28 SLKQVRGILSSADPSLAAELFPYL 51 (241)
Q Consensus 28 ~L~q~relll~~~p~ll~~~lp~v 51 (241)
++.+.|+++ ..+|++++.++..+
T Consensus 14 qf~qlR~~v-qqNP~lL~~lLqqL 36 (72)
T 1pve_A 14 QFQQMRQII-QQNPSLLPALLQQI 36 (72)
T ss_dssp TTTTHHHHH-TTCGGGHHHHHHHH
T ss_pred HHHHHHHHH-HHCHHHHHHHHHHH
Confidence 345788888 58997777777754
Done!