BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026210
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 48 DSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYV 107
D + + +T + C C K F + NL+ H+R H +K Y
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-------------TGEKPYA 107
Query: 108 CPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTR 166
CPE ++ L ++ H GEK YKC C K ++ + + H +T G +
Sbjct: 108 CPEC-------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 167 EYKC-DCGTIFSRRDSFITHR 186
YKC +CG FSRRD+ H+
Sbjct: 161 PYKCPECGKSFSRRDALNVHQ 181
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
+ C C K F R +L H+R H +K Y CPE ++ D
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTH-------------TGEKPYKCPEC-------GKSFSD 61
Query: 125 LTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSF 182
+ +H GEK YKC C K ++ +++ +AH +T G + Y C +CG FS+
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 183 ITHR 186
H+
Sbjct: 122 RAHQ 125
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 137 GEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITHR 186
GEK Y C C K ++ H +T G + YKC +CG FS + H+
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT- 162
K Y CPE ++ + ++KH GEK YKC C K ++ SD + H +T
Sbjct: 3 KPYKCPEC-------GKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 163 CGTREYKC-DCGTIFSRRDSFITHR 186
G + YKC +CG FSR D H+
Sbjct: 56 TGEKPYKCPECGKSFSRSDHLSRHQ 80
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 20/98 (20%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
+ C C K F + NLQ H+R H +K Y CPE ++
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTH-------------TGEKPYKCPEC-------GKSFSQ 44
Query: 125 LTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT 162
+ ++KH GEK YKC C K ++ H +T
Sbjct: 45 SSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 139 KKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITH 185
++YKC+ C K ++ SD H +T G + YKCD CG F +R I H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 65 FVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARAL 122
F+C CNK + + +LQ+H R H +K Y C C R
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKH-------------TGEKPYQCDFKDC-----ERRF 48
Query: 123 GDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC---DCGTIFSR 178
+K+H R G K ++C+ C +K++ K H +T G + + C C F+R
Sbjct: 49 SRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFAR 108
Query: 179 RDSFITH 185
D + H
Sbjct: 109 SDELVRH 115
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 106 YVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG 164
Y CP +C R D + + +H G+K ++C C + ++ H++T G
Sbjct: 5 YACPVESC-----DRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 165 TREYKCD-CGTIFSRRD 180
+ + CD CG F+R D
Sbjct: 60 EKPFACDICGRKFARSD 76
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 106 YVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG 164
Y CP +C R T + H G+K ++C C + ++ Q+ AH++T G
Sbjct: 5 YACPVESC-----DRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 165 TREYKCD-CGTIFS 177
+ + CD CG F+
Sbjct: 60 EKPFACDICGRKFA 73
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 130 KHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITHRA 187
+H S G + Y C C KK+ ++ HMK G + Y+C+ C F RDSF H
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT 86
Query: 188 FC 189
C
Sbjct: 87 SC 88
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 51 VIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPE 110
V+ + T ++ E C K + R +NL+ H R H +K Y+C
Sbjct: 56 VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH-------------TGEKPYMCEH 102
Query: 111 STCVHHNPARALGDLTGIKKHFSRKH-GEKKYKCER--CSKKYAVQSDWKAHMKT 162
C ++A + + KH +R H EK Y C+ C+K+Y S + H+KT
Sbjct: 103 EGC-----SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 106 YVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG 164
Y CP +C R + +H G+K ++C C + ++ H++T G
Sbjct: 5 YACPVESC-----DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 165 TREYKCD-CGTIFSRRD 180
+ + CD CG F+R D
Sbjct: 60 EKPFACDICGRKFARSD 76
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 138 EKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKC-DCGTIFSRRDSFITHR 186
EK Y C C K ++ S H + G + YKC +CG FS+ I H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 106 YVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG 164
Y CP +C R + +H G+K ++C C + ++ H++T G
Sbjct: 5 YACPVESC-----DRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 165 TREYKCD-CGTIFSRRD 180
+ + CD CG F+R D
Sbjct: 60 EKPFACDICGRKFARSD 76
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 106 YVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG 164
Y CP +C R T + H G+K ++C C + ++ + H++T G
Sbjct: 5 YACPVESC-----DRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 165 TREYKCD-CGTIFS 177
+ + CD CG F+
Sbjct: 60 EKPFACDICGRKFA 73
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 20/94 (21%)
Query: 68 EICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGDLTG 127
E C++ F + NL H R H +K + C C+ R TG
Sbjct: 10 ESCDRRFSQKTNLDTHIRIH-------------TGQKPFQC--RICM-----RNFSQHTG 49
Query: 128 IKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMK 161
+ +H GEK + C+ C +K+A H K
Sbjct: 50 LNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK 83
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 106 YVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG 164
Y CP +C R + +H G+K ++C C + ++ H++T G
Sbjct: 5 YACPVESC-----DRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 165 TREYKCD-CGTIFSRRD 180
+ + CD CG F+R D
Sbjct: 60 EKPFACDICGRKFARSD 76
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 47/125 (37%), Gaps = 24/125 (19%)
Query: 43 GMPDPDSEVIALSPKTLLATNR-------FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 95
G+ P LS L NR F C C K + R +NL H +
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH----------EA 56
Query: 96 RNSKEVRKKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSD 155
RN ++V+ C S C ++ H GE YKC CS+++ + D
Sbjct: 57 RNCMNRSEQVFTC--SVC-----QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKD 109
Query: 156 WKAHM 160
++HM
Sbjct: 110 LQSHM 114
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 106 YVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG 164
Y CP +C R + +H G+K ++C C + ++ H++T G
Sbjct: 4 YACPVESC-----DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 58
Query: 165 TREYKCD-CGTIFSRRD 180
+ + CD CG F+R D
Sbjct: 59 EKPFACDICGRKFARSD 75
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 106 YVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG 164
Y CP +C R + +H G+K ++C C + ++ H++T G
Sbjct: 5 YACPVESC-----DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 165 TREYKCD-CGTIFSRRD 180
+ + CD CG F+R D
Sbjct: 60 EKPFACDICGRKFARSD 76
>pdb|2CZR|A Chain A, Crystal Structure Of Tbp-interacting Protein (tk-tip26)
And Implications For Its Inhibition Mechanism Of The
Interaction Between Tbp And Tata-dna
Length = 226
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 18/120 (15%)
Query: 47 PDSEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVY 106
PD+ V + + + T R++ K D N + G +K+ + N K V++ VY
Sbjct: 78 PDNGVFYIKNGSFVLTYRYL-----KATLADINDHIVWSG----FKVVEDNGKLVQEDVY 128
Query: 107 VCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKTCGTR 166
+ V+H AL I F YKCE C KY + +AH++ G +
Sbjct: 129 EYLGAALVNHIKNNALAGQDYIFWQF--------YKCEECG-KYVDIENLEAHLREHGIK 179
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 106 YVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT-CG 164
Y CP +C R + +H G+K ++C C + ++ H++T G
Sbjct: 5 YACPVESC-----DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 165 TREYKCD-CGTIFSRRD 180
+ + CD CG F+R D
Sbjct: 60 EKPFACDICGRKFARSD 76
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 141 YKCERCSKKYAVQSDWKAH-MKTCGTREYKCD-CGTIFSRRDSFITH 185
Y C+ C K++ +SD K H G + +KC CG FS+ + ITH
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 20/95 (21%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
F C+IC K F+R L H H+ + Y C +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQYC-------GKRFHQ 41
Query: 125 LTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAH 159
+ +KKH GEK +KC+ C K ++ S+ H
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGH 87
FVCE+C + F R ++L+ H R H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGH 87
FVCE+C + F R + L+ H R H
Sbjct: 3 FVCEVCTRAFARQEYLKRHYRSH 25
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGH 87
FVCE+C + F R + L+ H R H
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSH 25
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 138 EKKYKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITH 185
+K YKC+RC + + + +H G + Y+C+ CG F+R + TH
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 120 RALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAH-MKTCGTREYKC-DCGTIF 176
R+ LT +++HF+ EKKY C C K + + H + G R Y+C CG F
Sbjct: 30 RSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSF 88
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGH 87
FVCE+C + F R ++L+ H R H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 141 YKCERCSKKYAVQSDWKAHMKT-CGTREYKCD-CGTIFSRRDSFITH 185
+ CE C++ +A Q K H ++ + Y C C F+RRD I H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 24/98 (24%)
Query: 67 CEICNKGFQRDQNLQLHRRGHN--LPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALGD 124
CE+C K F R L+ H R H P+K K TC + A D
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCK-----------------TCDY-----AAAD 48
Query: 125 LTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAHMKT 162
+ + KH E+ +KC+ C S H+++
Sbjct: 49 SSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS 86
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 18/99 (18%)
Query: 64 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPARALG 123
R++C + G ++N WKL+ SK +K + C E C +
Sbjct: 3 RYICSFADCGAAYNKN-----------WKLQAHLSKHTGEKPFPCKEEGC-----EKGFT 46
Query: 124 DLTGIKKHFSRKHGEKKYKCER--CSKKYAVQSDWKAHM 160
L + +H GEK + C+ C ++ +++ K H
Sbjct: 47 SLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 85
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKC--ERCSKKYAVQSDWKAHMK 161
+V+VC E +A + + +K+H GEK ++C E C K++++ + + H++
Sbjct: 33 RVHVCAEC-------GKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR 85
Query: 162 T-CGTREYKC---DCGTIFSRRDSFITH 185
G R Y C C F++ + +H
Sbjct: 86 IHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 104 KVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKYKCERCSKKYAVQSDWKAH-MKT 162
+ CP C + D + ++KH HG + + C C K + S K H +
Sbjct: 4 RTIACPHKGCT-----KMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVH 57
Query: 163 CGTREYKC---DCGTIFSRRDSFITH 185
G + ++C CG FS + TH
Sbjct: 58 TGEKPFQCTFEGCGKRFSLDFNLRTH 83
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 146 CSKKYAVQSDWKAHMKT-CGTREYKCD---CGTIFSRRDSFITH 185
C K Y S KAH++T G + Y CD CG F+R D H
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 57
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 146 CSKKYAVQSDWKAHMKT-CGTREYKCD---CGTIFSRRDSFITH 185
C K Y S KAH++T G + Y CD CG F+R D H
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH 56
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGH 87
+ CE C KG+ R NL +H+R H
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVH 35
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 24/135 (17%)
Query: 60 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVRKKVYVCPESTCVHHNPA 119
+ R++C + G ++N WKL+ K +K + C E C
Sbjct: 8 VVYKRYICSFADCGAAYNKN-----------WKLQAHLCKHTGEKPFPCKEEGC-----E 51
Query: 120 RALGDLTGIKKHFSRKHGEKKYKCER--CSKKYAVQSDWKAH------MKTCGTREYKCD 171
+ L + +H GEK + C+ C ++ +++ K H +K C + +
Sbjct: 52 KGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN 111
Query: 172 CGTIFSRRDSFITHR 186
CG F + + H+
Sbjct: 112 CGKAFKKHNQLKVHQ 126
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 170 CDCGTIFSRRDSFITHR 186
C+CG +FSR+D ++H+
Sbjct: 16 CECGKVFSRKDQLVSHQ 32
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 84 RRGHNLPWKLKQRNSKEVR--KKVYVCPESTCVHHNPARALGDLTGIKKHFSRKHGEKKY 141
R G + K K N V +K + CP C + +K H GEK +
Sbjct: 67 REGKSFKAKYKLVNHIRVHTGEKPFPCPFPGC-----GKIFARSENLKIHKRTHTGEKPF 121
Query: 142 KCE--RCSKKYAVQSDWKAHM 160
KCE C +++A SD K HM
Sbjct: 122 KCEFEGCDRRFANSSDRKKHM 142
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGH 87
F CE CNK F+ +LQ H R H
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIH 32
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGHN 88
F+C+ C + F + NL +H R H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHT 41
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGH 87
F C +CN+ F R +L LH + H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 146 CSKKYAVQSDWKAHMKT-CGTREYKC---DCGTIFSRRDSFITH 185
C+K Y S KAH++T G + YKC C F+R D H
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGHN 88
+VC+ C K F + L +HRR H
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHT 34
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGHNL 89
F C C++ F R +L LHR+ H L
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRHML 36
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 139 KKYKCERCSKKYAVQSDWKAHMKTCGTRE 167
K Y+C+ C K++A S+ K H+KT ++E
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 135 KHGEKKYKCERCSKKYAVQSDWKAHMKTCGTRE---YKC-DCGTIFSRRDSFITH 185
K GE Y+C+ CS+ Y S++ H T R Y C C F+R+D+ H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
>pdb|3E80|A Chain A, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
pdb|3E80|B Chain B, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
pdb|3E80|C Chain C, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
Length = 749
Score = 27.7 bits (60), Expect = 6.3, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 9 AMTVASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPK-----TLLATN 63
A+ + G +V +PG Q + K++ + + D + PK LLA +
Sbjct: 245 ALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGS 304
Query: 64 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKE 100
+ E N F +D N++ H + W+ Q S++
Sbjct: 305 YYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRK 341
>pdb|3E7J|A Chain A, Heparinaseii H202a/y257a Double Mutant Complexed With A
Heparan Sulfate Tetrasaccharide Substrate
pdb|3E7J|B Chain B, Heparinaseii H202a/y257a Double Mutant Complexed With A
Heparan Sulfate Tetrasaccharide Substrate
Length = 749
Score = 27.7 bits (60), Expect = 6.3, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 9 AMTVASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPK-----TLLATN 63
A+ + G +V +PG Q + K++ + + D + PK LLA +
Sbjct: 245 ALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGS 304
Query: 64 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKE 100
+ E N F +D N++ H + W+ Q S++
Sbjct: 305 YYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRK 341
>pdb|2FUQ|A Chain A, Crystal Structure Of Heparinase Ii
pdb|2FUQ|B Chain B, Crystal Structure Of Heparinase Ii
Length = 747
Score = 27.7 bits (60), Expect = 6.3, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 9 AMTVASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPK-----TLLATN 63
A+ + G +V +PG Q + K++ + + D + PK LLA +
Sbjct: 243 ALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGS 302
Query: 64 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKE 100
+ E N F +D N++ H + W+ Q S++
Sbjct: 303 YYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRK 339
>pdb|2FUT|A Chain A, Crystal Structure Of Heparinase Ii Complexed With A
Disaccharide Product
pdb|2FUT|B Chain B, Crystal Structure Of Heparinase Ii Complexed With A
Disaccharide Product
Length = 748
Score = 27.7 bits (60), Expect = 6.5, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 9 AMTVASATGEASVSSPGSQIQVIPPTQKKKRNLPGMPDPDSEVIALSPK-----TLLATN 63
A+ + G +V +PG Q + K++ + + D + PK LLA +
Sbjct: 244 ALWILDRXGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTXPALLAGS 303
Query: 64 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKE 100
+ E N F +D N++ H + W+ Q S++
Sbjct: 304 YYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRK 340
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 65 FVCEICNKGFQRDQNLQLHRRGHN 88
+ C +C K F Q+L +H+R H+
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHS 36
>pdb|2YIN|A Chain A, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|B Chain B, Structure Of The Complex Between Dock2 And Rac1
Length = 436
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 1 MTEIVNSSAMTVASATGEASVSSPGSQIQ--VIPPTQKKKRNLPGMPDPD 48
MT+ N+ M SA G+ ++PG IQ + P + P PD
Sbjct: 193 MTQFPNAEKMNTTSAPGDDVKNAPGQYIQCFTVQPVLDEHPRFKNKPVPD 242
>pdb|3B13|A Chain A, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|C Chain C, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 431
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 1 MTEIVNSSAMTVASATGEASVSSPGSQIQ--VIPPTQKKKRNLPGMPDPDSEV 51
MT+ N+ M SA G+ ++PG IQ + P + P PD +
Sbjct: 188 MTQFPNAEKMNTTSAPGDDVKNAPGQYIQCFTVQPVLDEHPRFKNKPVPDQII 240
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 133 SRKHGEKKYKCERCSKKYAVQSDWKAHMKT 162
S GEK Y+C C K + ++S H +T
Sbjct: 3 SGSSGEKPYECTDCGKAFGLKSQLIIHQRT 32
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 60 LATNRFVCEICNKGFQRDQNLQLHR 84
+A RF CE C K F++ ++ HR
Sbjct: 34 VAALRFPCEFCGKRFEKPDSVAAHR 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,635,495
Number of Sequences: 62578
Number of extensions: 244198
Number of successful extensions: 928
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 196
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)