BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026211
MATQFLSTANSFLSSTLPSSSSSPSSSSSLSNPTLIHIHKHNSKRQQQAICKAFTQSPTP
APLPSITKRNLSISFITGFVFSSLAGGGNGKGCFDANAAILEAEDDEELLEKVKKDRKKR
LEKQSALSSSMKEKGYLQDLVYKLSKVGEAIEKNDLAAASSVLGRSTETDWVQKANQAFT
KLSSSPEEMTEVDAFNSSLASLISSVTKNDIESSKVAFVASASAFEKWTSLTGLVEQLKG
L

High Scoring Gene Products

Symbol, full name Information P value
AT4G02530 protein from Arabidopsis thaliana 8.3e-35

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026211
        (241 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2132323 - symbol:AT4G02530 "AT4G02530" species...   377  8.3e-35   1


>TAIR|locus:2132323 [details] [associations]
            symbol:AT4G02530 "AT4G02530" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009543 "chloroplast thylakoid lumen"
            evidence=IDA] [GO:0031977 "thylakoid lumen" evidence=IDA]
            [GO:0009579 "thylakoid" evidence=IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0006636 "unsaturated fatty acid
            biosynthetic process" evidence=RCA] [GO:0009409 "response to cold"
            evidence=RCA] [GO:0009697 "salicylic acid biosynthetic process"
            evidence=RCA] [GO:0009814 "defense response, incompatible
            interaction" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0015979 "photosynthesis"
            evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
            evidence=RCA] [GO:0016117 "carotenoid biosynthetic process"
            evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
            process, mevalonate-independent pathway" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
            response to bacterium" evidence=RCA] [GO:0043085 "positive
            regulation of catalytic activity" evidence=RCA] GO:GO:0009570
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009941 GO:GO:0009535
            GO:GO:0031977 EMBL:AC002330 EMBL:AL161494 GO:GO:0009543
            EMBL:AY039885 EMBL:AY081737 EMBL:AY088583 EMBL:AK226276
            IPI:IPI00525823 PIR:T01096 RefSeq:NP_192162.1 UniGene:At.22175
            STRING:O22773 PaxDb:O22773 PRIDE:O22773 ProMEX:O22773
            EnsemblPlants:AT4G02530.1 GeneID:827927 KEGG:ath:AT4G02530
            GeneFarm:3264 TAIR:At4g02530 eggNOG:NOG258803 HOGENOM:HOG000005940
            InParanoid:O22773 OMA:QAIDNND PhylomeDB:O22773
            ProtClustDB:CLSN2916016 Genevestigator:O22773 GermOnline:AT4G02530
            Uniprot:O22773
        Length = 216

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 76/118 (64%), Positives = 90/118 (76%)

Query:   124 QSALSSSMKEKGYLQDLVYKLSKVGEAIEKNDLAAASSVLGRSTETDWVQKANQAFTKLS 183
             Q+ L+S++KEKGYLQDLVYKLSKVG+AIE NDL AA  VLG+  +T+WV+  N AFTKLS
Sbjct:    99 QAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLS 158

Query:   184 SSPEEMTEVDAFNSSLASLISSVTKNDIXXXXXXXXXXXXXXXXWTSLTGLVEQLKGL 241
             +SPEE TEV+AFNSSLASLI+SV KNDI                WT+LTGL+EQLKGL
Sbjct:   159 TSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.125   0.343    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       170   0.00086  108 3  11 23  0.44    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.44u 0.09s 16.53t   Elapsed:  00:00:01
  Total cpu time:  16.44u 0.09s 16.53t   Elapsed:  00:00:01
  Start:  Fri May 10 03:10:15 2013   End:  Fri May 10 03:10:16 2013

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