BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026211
         (241 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis
           thaliana GN=At4g02530 PE=1 SV=3
          Length = 216

 Score =  241 bits (615), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 121/174 (69%), Positives = 146/174 (83%), Gaps = 2/174 (1%)

Query: 68  KRNLSISFITGFVFSSLAGGGNGKGCFDANAAILEAEDDEELLEKVKKDRKKRLEKQSAL 127
           +R LS+ F++  V   L    N +   DANAAILEA+DDEELLEKVK+DRKKR+E+Q+ L
Sbjct: 45  RRELSLGFMSSLVAIGLVS--NDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVL 102

Query: 128 SSSMKEKGYLQDLVYKLSKVGEAIEKNDLAAASSVLGRSTETDWVQKANQAFTKLSSSPE 187
           +S++KEKGYLQDLVYKLSKVG+AIE NDL AA  VLG+  +T+WV+  N AFTKLS+SPE
Sbjct: 103 NSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPE 162

Query: 188 EMTEVDAFNSSLASLISSVTKNDIESSKVAFVASASAFEKWTSLTGLVEQLKGL 241
           E TEV+AFNSSLASLI+SV KNDIESSK+AFV+SA AFEKWT+LTGL+EQLKGL
Sbjct: 163 ENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216


>sp|P97481|EPAS1_MOUSE Endothelial PAS domain-containing protein 1 OS=Mus musculus
           GN=Epas1 PE=1 SV=2
          Length = 874

 Score = 33.1 bits (74), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 139 DLVYKLSKVGEAIEKNDLAAASSVLGRSTETDWVQKANQAFTKLSSSPEEMTEV 192
           D+V+ + +  E++ K  L A +S+   S +    +K+N  FTKL   PEE+ ++
Sbjct: 351 DVVFSMDQT-ESLFKPHLMAMNSIFDSSDDVAVTEKSNYLFTKLKEEPEELAQL 403


>sp|Q0UJJ7|NST1_PHANO Stress response protein NST1 OS=Phaeosphaeria nodorum (strain SN15
           / ATCC MYA-4574 / FGSC 10173) GN=NST1 PE=3 SV=3
          Length = 1202

 Score = 30.8 bits (68), Expect = 9.4,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 8   TANSFLSSTLPSSSSSPSSSSSLSNPTLIHIHKHNSKRQQQAICKAFTQSPTP 60
           T  S    T   +++ P +SS L+ P L  +++   KR+++   K   Q P+P
Sbjct: 120 TPRSMAQGTKAPAAAMPPNSSVLNMPALNAVNRKKQKRREKEAAKKAAQDPSP 172


>sp|Q7V8B1|CLPB_PROMM Chaperone protein ClpB OS=Prochlorococcus marinus (strain MIT 9313)
           GN=clpB PE=3 SV=1
          Length = 865

 Score = 30.8 bits (68), Expect = 9.6,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 21/130 (16%)

Query: 107 EELLEKVKKDRKKRLEKQSALSSS-MKEKGYLQDLVYKLSKVGEAIEKNDL----AAASS 161
           +E LEK++++  +  E+QSAL++   +EKG + D    LS + E IE+  L    A  S 
Sbjct: 439 KERLEKLERELAELAEQQSALNAQWQQEKGAIDD----LSSLKEEIERVQLQVEQAKRSY 494

Query: 162 VLGRSTETDWVQKANQAFTKLSSSPEEMTEVDAFNSSLASLISSVTKNDIESSKVAFVAS 221
            L ++ E ++   A     K  S  E     D      + L   VT++DI          
Sbjct: 495 DLNKAAELEYGTLA--GLQKQLSEKETALAQDGEAGDKSLLREEVTEDDI---------- 542

Query: 222 ASAFEKWTSL 231
           A    KWT +
Sbjct: 543 ADVIAKWTGI 552


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.121    0.318 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,253,770
Number of Sequences: 539616
Number of extensions: 3102873
Number of successful extensions: 23201
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 21769
Number of HSP's gapped (non-prelim): 1039
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)