Query 026211
Match_columns 241
No_of_seqs 28 out of 30
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 08:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zsu_A TLL2057 protein, cyanoq 76.0 16 0.00054 29.7 8.6 91 136-231 29-125 (130)
2 1vyk_A Oxygen-evolving enhance 59.8 56 0.0019 26.7 8.8 82 147-231 62-147 (149)
3 3ls0_A SLL1638 protein, PSBQ; 56.7 79 0.0027 25.7 9.4 91 136-231 31-128 (133)
4 1owx_A Lupus LA protein, SS-B, 52.9 4.4 0.00015 31.8 1.1 30 94-123 86-115 (121)
5 2trc_P Phosducin, MEKA, PP33; 48.4 12 0.0004 30.7 3.0 22 103-124 70-91 (217)
6 1a0r_P Phosducin, MEKA, PP33; 47.8 13 0.00045 31.5 3.3 22 103-124 83-104 (245)
7 2aze_A Transcription factor DP 46.7 19 0.00064 30.2 4.0 38 106-152 6-49 (155)
8 4h9n_C Death domain-associated 43.1 27 0.00091 30.4 4.5 29 101-129 172-201 (212)
9 3us6_A Histidine-containing ph 39.5 1.4E+02 0.0047 23.5 9.6 79 135-230 48-135 (153)
10 2yru_A Steroid receptor RNA ac 31.2 53 0.0018 25.7 4.1 52 137-206 58-109 (118)
11 3de8_A Soluble cytochrome B562 28.8 55 0.0019 24.0 3.7 29 193-221 66-94 (106)
12 3lnr_A Aerotaxis transducer AE 26.0 64 0.0022 25.7 3.9 70 139-212 15-88 (175)
13 3b7k_A Acyl-coenzyme A thioest 25.3 27 0.00091 30.0 1.6 39 100-138 143-182 (333)
14 4ien_A Putative acyl-COA hydro 22.6 38 0.0013 26.2 1.9 27 99-125 131-157 (163)
15 1vpm_A Acyl-COA hydrolase; NP_ 22.5 52 0.0018 25.3 2.6 26 99-124 141-166 (169)
16 1yyb_A Programmed cell death p 21.4 59 0.002 19.7 2.1 18 106-124 4-21 (27)
17 3lvh_D LCB, clathrin light cha 21.1 24 0.00082 30.9 0.4 37 87-125 78-117 (205)
No 1
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=75.96 E-value=16 Score=29.69 Aligned_cols=91 Identities=9% Similarity=0.184 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhhhhhhhcCChhHhHhhhcCCCCchHHHHHHHHhhhccCC------hhhhhhHHHHHhhHHHHHHhhccC
Q 026211 136 YLQDLVYKLSKVGEAIEKNDLAAASSVLGRSTETDWVQKANQAFTKLSSS------PEEMTEVDAFNSSLASLISSVTKN 209 (241)
Q Consensus 136 yvQdaVYKLSKvGqAIe~gDL~~AasvLg~~~d~dWV~~~~~Af~klSss------~eek~~~dtF~sSlasL~ssv~~g 209 (241)
.+|++=-+|.+.+..|+++|....-+.+-+ =++++-...+.|+.+ ++.++....|...|..|=-+...+
T Consensus 29 ~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhG-----Plg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~ 103 (130)
T 3zsu_A 29 DIEKNAERFADLEVSVAKGDWQEARNIMRG-----PLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADLD 103 (130)
T ss_dssp HHHHHHTTHHHHHHHHHTTCHHHHHHHHHT-----HHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHhc-----hHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566678899999999999998888865 466666666666554 556666778899999999999999
Q ss_pred chhhhHHHHHhhhHHHHHHHHh
Q 026211 210 DIESSKVAFVASASAFEKWTSL 231 (241)
Q Consensus 210 D~~ssK~AFVsSA~ALe~Was~ 231 (241)
|...+..+|.-.+.+|.++..+
T Consensus 104 n~~~a~k~Y~~a~adfdafl~l 125 (130)
T 3zsu_A 104 SVTVAQEGFREAEADFKAYLNS 125 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998653
No 2
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=59.80 E-value=56 Score=26.75 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=56.5
Q ss_pred hhhhhhcCChhHhHhhhcCCCCchHHHHHHHHhhhccCChhhhhh----HHHHHhhHHHHHHhhccCchhhhHHHHHhhh
Q 026211 147 VGEAIEKNDLAAASSVLGRSTETDWVQKANQAFTKLSSSPEEMTE----VDAFNSSLASLISSVTKNDIESSKVAFVASA 222 (241)
Q Consensus 147 vGqAIe~gDL~~AasvLg~~~d~dWV~~~~~Af~klSss~eek~~----~dtF~sSlasL~ssv~~gD~~ssK~AFVsSA 222 (241)
++..|++++...+.+.|=... ..==++++.....+ .+++|.. ...|..+|..|--++..+|...+..+|--.+
T Consensus 62 vk~lI~k~~W~~vrn~LR~~~-~~Lr~Dl~~li~sl--p~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~ 138 (149)
T 1vyk_A 62 VKQFIDRKAWPSLQNDLRLRA-SYLRYDLKTVISAK--PKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTV 138 (149)
T ss_dssp THHHHHTTCHHHHHHHHHHHH-HHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccHHHHHHHHHHhH-HHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345577777666666654310 11123333333333 3555444 5889999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 026211 223 SAFEKWTSL 231 (241)
Q Consensus 223 ~ALe~Was~ 231 (241)
.+|.++.+.
T Consensus 139 ~~ld~vl~~ 147 (149)
T 1vyk_A 139 SNINEVLAK 147 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 3
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=56.69 E-value=79 Score=25.70 Aligned_cols=91 Identities=11% Similarity=0.158 Sum_probs=68.7
Q ss_pred hHHHHHHHHHh-hhhhhhcCChhHhHhhhcCCCCchHHHHHHHHhhhccC------ChhhhhhHHHHHhhHHHHHHhhcc
Q 026211 136 YLQDLVYKLSK-VGEAIEKNDLAAASSVLGRSTETDWVQKANQAFTKLSS------SPEEMTEVDAFNSSLASLISSVTK 208 (241)
Q Consensus 136 yvQdaVYKLSK-vGqAIe~gDL~~AasvLg~~~d~dWV~~~~~Af~klSs------s~eek~~~dtF~sSlasL~ssv~~ 208 (241)
.+|++=-+|.+ .+..|+++|....-+.+-+- ++++-...+.|+. .++.++....|...|..|=-+...
T Consensus 31 ~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGP-----lg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~ 105 (133)
T 3ls0_A 31 PIAVARDGMEKRLQGLIADQNWVDTQTYIHGP-----LGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKD 105 (133)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTT-----TTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHhhhcchHHHHHHHhch-----HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566678888 89999999988888877542 3333333444333 345556667888999999999999
Q ss_pred CchhhhHHHHHhhhHHHHHHHHh
Q 026211 209 NDIESSKVAFVASASAFEKWTSL 231 (241)
Q Consensus 209 gD~~ssK~AFVsSA~ALe~Was~ 231 (241)
+|...+..+|.-.+.+|.++..+
T Consensus 106 ~n~~~a~k~Y~~a~adfdafl~l 128 (133)
T 3ls0_A 106 RNGSQAKIQYQEALADFDSFLNL 128 (133)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998654
No 4
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.88 E-value=4.4 Score=31.79 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.4
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHHH
Q 026211 94 FDANAAILEAEDDEELLEKVKKDRKKRLEK 123 (241)
Q Consensus 94 ~~a~aALLeaDDDEELLEKvK~dRkkRLqk 123 (241)
.....-+|+.|+.++.++|+.+||++|+.+
T Consensus 86 ~~~~~evL~GeeE~~yw~Ki~ed~~~k~~k 115 (121)
T 1owx_A 86 KEVTWEVLEGEVEKEALKKIIEDQQESLNK 115 (121)
T ss_dssp SSEEEEECCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHHHHHhC
Confidence 455667999999999999999999999976
No 5
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=48.39 E-value=12 Score=30.67 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=18.5
Q ss_pred ccChHHHHHHHHHHHHHHHHHh
Q 026211 103 AEDDEELLEKVKKDRKKRLEKQ 124 (241)
Q Consensus 103 aDDDEELLEKvK~dRkkRLqkQ 124 (241)
+|||+++|++.++.|-+.|.++
T Consensus 70 d~~d~~fl~~~r~~Rl~el~~~ 91 (217)
T 2trc_P 70 DKEDEGCLRKYRRQCMQDMHQK 91 (217)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 6788999999999888888653
No 6
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=47.77 E-value=13 Score=31.47 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=18.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHh
Q 026211 103 AEDDEELLEKVKKDRKKRLEKQ 124 (241)
Q Consensus 103 aDDDEELLEKvK~dRkkRLqkQ 124 (241)
+|||+++|++.++.|-+.|.++
T Consensus 83 d~eDe~fL~~~r~~Rl~el~~~ 104 (245)
T 1a0r_P 83 DKEDENCLRKYRRQCMQDMHQK 104 (245)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 6789999999999888888753
No 7
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=46.70 E-value=19 Score=30.15 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH------HHHHhhhhhhh
Q 026211 106 DEELLEKVKKDRKKRLEKQSALSSSMKEKGYLQDLV------YKLSKVGEAIE 152 (241)
Q Consensus 106 DEELLEKvK~dRkkRLqkQ~vi~s~~~EtgyvQdaV------YKLSKvGqAIe 152 (241)
|-+-||.-|..|+.||++ .+.|||+++ ..|-.--++++
T Consensus 6 e~~~Le~Ek~~~~~rI~~---------K~~~LqeL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQ---------KQSQLQELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777765 345666643 44555555555
No 8
>4h9n_C Death domain-associated protein 6; histone chaperone, DNA binding protein-apoptosis complex; 1.95A {Homo sapiens} PDB: 4h9o_C
Probab=43.06 E-value=27 Score=30.45 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=21.5
Q ss_pred ccccChHHHHHHHHHHHHHHHHHh-hhhhh
Q 026211 101 LEAEDDEELLEKVKKDRKKRLEKQ-SALSS 129 (241)
Q Consensus 101 LeaDDDEELLEKvK~dRkkRLqkQ-~vi~s 129 (241)
=||.+|.+|.+|.++||+.-..+- .||..
T Consensus 172 DPA~~D~~L~~KL~eN~~~~~~kl~ev~~K 201 (212)
T 4h9n_C 172 DPALSDPVLARRLRENRSLAMSRLDEVISK 201 (212)
T ss_dssp CGGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999999655443 24443
No 9
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=39.51 E-value=1.4e+02 Score=23.51 Aligned_cols=79 Identities=11% Similarity=0.212 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhhhhhhhcC--ChhHhHhhhcCCCCchHHHHHHHHhhhccCChhhhhhHHHHHhhHHHHHHhhccCchh
Q 026211 135 GYLQDLVYKLSKVGEAIEKN--DLAAASSVLGRSTETDWVQKANQAFTKLSSSPEEMTEVDAFNSSLASLISSVTKNDIE 212 (241)
Q Consensus 135 gyvQdaVYKLSKvGqAIe~g--DL~~AasvLg~~~d~dWV~~~~~Af~klSss~eek~~~dtF~sSlasL~ssv~~gD~~ 212 (241)
.|+++.--.|..--++|+.+ |+..... -.-.++.+...++. ..+...-..|...|..||.+
T Consensus 48 ~Fl~d~~~~l~~L~~al~~~~~D~~~l~~---------~aH~LKGss~~lGa--------~~l~~~c~~lE~~~~~~~~~ 110 (153)
T 3us6_A 48 LFFDDSERILKDLSFAVDQQSIDFKKVDA---------HVHQFKGSSASIGA--------QRVKNSCVAFRNFCEEQNID 110 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCHHHHHH---------HHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHH---------HHHHHHHHHHHhcH--------HHHHHHHHHHHHHHHcCCHH
Confidence 46666666666666777777 6654421 11122333333322 24445555566666666655
Q ss_pred h-------hHHHHHhhhHHHHHHHH
Q 026211 213 S-------SKVAFVASASAFEKWTS 230 (241)
Q Consensus 213 s-------sK~AFVsSA~ALe~Was 230 (241)
. -|..|--.-.+|++|..
T Consensus 111 ~~~~~l~~l~~e~~~v~~~L~~~~~ 135 (153)
T 3us6_A 111 ACRRCLQQVKQEYLLVKNKLETLLR 135 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44556666667777754
No 10
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.19 E-value=53 Score=25.68 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhhhhhcCChhHhHhhhcCCCCchHHHHHHHHhhhccCChhhhhhHHHHHhhHHHHHHhh
Q 026211 137 LQDLVYKLSKVGEAIEKNDLAAASSVLGRSTETDWVQKANQAFTKLSSSPEEMTEVDAFNSSLASLISSV 206 (241)
Q Consensus 137 vQdaVYKLSKvGqAIe~gDL~~AasvLg~~~d~dWV~~~~~Af~klSss~eek~~~dtF~sSlasL~ssv 206 (241)
-+..+-+|...-++|+++|+.+|..+--. .+.+ . -++...|.-.|..||.-.
T Consensus 58 s~~v~~~L~~l~~al~~~dy~~A~~ih~~-----l~t~------~-------~~E~~~Wm~GlKrLI~~a 109 (118)
T 2yru_A 58 SIPVKKRMALLVQELLHHQWDAADDIHRS-----LMVD------H-------VTEVSQWMVGVKRLIAEK 109 (118)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----HHHS------T-------HHHHTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHC------c-------HHHHHhHHHHHHHHHHHH
Confidence 44577889999999999999999877542 2211 1 123556777777777544
No 11
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=28.83 E-value=55 Score=24.03 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=23.8
Q ss_pred HHHHhhHHHHHHhhccCchhhhHHHHHhh
Q 026211 193 DAFNSSLASLISSVTKNDIESSKVAFVAS 221 (241)
Q Consensus 193 dtF~sSlasL~ssv~~gD~~ssK~AFVsS 221 (241)
+.|...+..|...+..||.+..|.+|-.-
T Consensus 66 ~~l~~~~~~l~~aa~~gd~~~~k~a~~~v 94 (106)
T 3de8_A 66 DILVGQIHDALHLANEGKVKEAQAAAEQL 94 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44777888888889999999999998543
No 12
>3lnr_A Aerotaxis transducer AER2; HAMP domain, poly-HAMP domains, signaling protein; 2.64A {Pseudomonas aeruginosa}
Probab=25.98 E-value=64 Score=25.75 Aligned_cols=70 Identities=11% Similarity=0.179 Sum_probs=40.7
Q ss_pred HHHHHHHhhhhhhhcCChhHhHhhhcCCCCchHHHHHHHHhhhccC----ChhhhhhHHHHHhhHHHHHHhhccCchh
Q 026211 139 DLVYKLSKVGEAIEKNDLAAASSVLGRSTETDWVQKANQAFTKLSS----SPEEMTEVDAFNSSLASLISSVTKNDIE 212 (241)
Q Consensus 139 daVYKLSKvGqAIe~gDL~~AasvLg~~~d~dWV~~~~~Af~klSs----s~eek~~~dtF~sSlasL~ssv~~gD~~ 212 (241)
.-+-.+..+-++|..|||..-..+-+ . |=+..+..+++.+-. --.+-..++.+.+.+..+...+..||..
T Consensus 15 ~pL~~~~~~a~~IA~GDL~~~i~~~~--~--DEig~L~~al~~M~~~L~~~v~~i~~v~~l~~e~~~~a~~~~~Gdl~ 88 (175)
T 3lnr_A 15 QRADRIATLLQSFADGQLDTAVGEAP--A--PGYERLYDSLRALQRQLREQRAELQQVESLEAGLAEMSRQHEAGWID 88 (175)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCCCCS--S--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCcCCC--C--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 33456778889999999987554432 2 224444444444321 1222223445566777788888888654
No 13
>3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics, structural genomics consor SGC, fatty acid metabolism, hydrolase; HET: COA; 2.70A {Homo sapiens}
Probab=25.33 E-value=27 Score=30.04 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=19.0
Q ss_pred cccc-cChHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 026211 100 ILEA-EDDEELLEKVKKDRKKRLEKQSALSSSMKEKGYLQ 138 (241)
Q Consensus 100 LLea-DDDEELLEKvK~dRkkRLqkQ~vi~s~~~EtgyvQ 138 (241)
++|. |++..+.+++++.|+.|++....+....+++.+.+
T Consensus 143 ~~~~t~~e~~~~~~a~~r~~~r~~~~~~~~~~~~~~~~~~ 182 (333)
T 3b7k_A 143 VTLLTEQDHVEHNLAAERRKVRLQHEDTFNNLMKESSKFD 182 (333)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCCCC------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhccccc
Confidence 3444 66667778888888888876544444333333333
No 14
>4ien_A Putative acyl-COA hydrolase; hot DOG fold; HET: COA GDP; 2.00A {Neisseria meningitidis}
Probab=22.63 E-value=38 Score=26.17 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=21.1
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHhh
Q 026211 99 AILEAEDDEELLEKVKKDRKKRLEKQS 125 (241)
Q Consensus 99 ALLeaDDDEELLEKvK~dRkkRLqkQ~ 125 (241)
.+.+-|++..+.+.+++.|+.|++.+.
T Consensus 131 ~~p~t~~e~~~~~~a~~r~~~r~~~~~ 157 (163)
T 4ien_A 131 LEILTDRQRCRYEKAKKRRDISLQASE 157 (163)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 344448888899999999999998754
No 15
>1vpm_A Acyl-COA hydrolase; NP_241664.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative hydrolase; HET: COA; 1.66A {Bacillus halodurans} SCOP: d.38.1.1 PDB: 3sps_A
Probab=22.54 E-value=52 Score=25.26 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=20.2
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHh
Q 026211 99 AILEAEDDEELLEKVKKDRKKRLEKQ 124 (241)
Q Consensus 99 ALLeaDDDEELLEKvK~dRkkRLqkQ 124 (241)
.+.+.+++.++.+.+++-|+.|++++
T Consensus 141 ~~~~~~~e~~~~~~a~~r~~~r~~~~ 166 (169)
T 1vpm_A 141 VEPQTEEEKRLYETAPARKENRKKRA 166 (169)
T ss_dssp EECCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45555788899999999888887753
No 16
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=21.44 E-value=59 Score=19.74 Aligned_cols=18 Identities=39% Similarity=0.678 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 026211 106 DEELLEKVKKDRKKRLEKQ 124 (241)
Q Consensus 106 DEELLEKvK~dRkkRLqkQ 124 (241)
|+| ||+.++.|-.-|++|
T Consensus 4 d~E-Leair~~rl~~lq~~ 21 (27)
T 1yyb_A 4 DEE-LEALRRQRLAELQAK 21 (27)
T ss_dssp HHH-HHHHHHHHHHHHHHT
T ss_pred hHH-HHHHHHHHHHHHHhc
Confidence 444 777777777666665
No 17
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=21.11 E-value=24 Score=30.86 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=20.4
Q ss_pred CCCCCCccccccccccc---cChHHHHHHHHHHHHHHHHHhh
Q 026211 87 GGNGKGCFDANAAILEA---EDDEELLEKVKKDRKKRLEKQS 125 (241)
Q Consensus 87 ~~~~~~~~~a~aALLea---DDDEELLEKvK~dRkkRLqkQ~ 125 (241)
-+|+. .+..+||=++ ++..|-+.|-|+.|++|||+..
T Consensus 78 esngp--~d~yaai~qad~leeEPEsIRkWREEq~kRLeekD 117 (205)
T 3lvh_D 78 EANGP--ADGYAAIAQADRLTQEPESIRKWREEQRKRLQELD 117 (205)
T ss_dssp ---------------CCSTTTBSTTHHHHHHHHHTTTSTHHH
T ss_pred hcCCC--ccchhhhccccccccCchHHHHHHHHHHHHHHHHH
Confidence 34554 3333344444 7889999999999999998754
Done!