BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026212
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SN74|BH047_ARATH Transcription factor bHLH47 OS=Arabidopsis thaliana GN=BHLH47 PE=2
SV=1
Length = 240
Score = 198 bits (503), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 150/233 (64%), Gaps = 23/233 (9%)
Query: 18 VDASVDGHCPTKKNKSRVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLN 77
+A+ D C K +VPKR++KA RE+LKREHLN+LF++LA+ +E+NQ N+GKA +L
Sbjct: 13 ANATADERC----RKGKVPKRINKAVRERLKREHLNELFIELADTLELNQQNSGKASILC 68
Query: 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137
EA R LKD+F QIESL KE+ASLLSES YVT EKNELKEE S LE++I LQ+E+ AR
Sbjct: 69 EATRFLKDVFGQIESLRKEHASLLSESSYVTTEKNELKEETSVLETEISKLQNEIEARAN 128
Query: 138 QSKPDLNIPP---------EFQQPELSSHFPG----DSYGFPAAVEPTLSQAPAVLVVPI 184
QSKPDLN P + Q PE S FPG GF + TL VLV+PI
Sbjct: 129 QSKPDLNTSPAPEYHHHHYQQQHPERVSQFPGLPIFQGPGFQQSAT-TLHPPATVLVLPI 187
Query: 185 HSDLQAYSASDVAQLTSKP----ASNVSKPHARYPNPADSWPSQLLGENISST 233
D Q S++ Q +P +SNVSKP RY + ADSW S+LLGE + ++
Sbjct: 188 QPDPQTQDISEMTQ-AQQPLMFNSSNVSKPCPRYASAADSWSSRLLGERLKAS 239
>sp|Q8W2F2|BH011_ARATH Transcription factor bHLH11 OS=Arabidopsis thaliana GN=BHLH11 PE=2
SV=2
Length = 286
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 16/148 (10%)
Query: 40 HKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENAS 99
KAEREKL+R+ L + FL+L NA++ N+P + KA VL + ++LKD+ +Q++ L E +
Sbjct: 48 QKAEREKLRRDKLKEQFLELGNALDPNRPKSDKASVLTDTIQMLKDVMNQVDRLKAEYET 107
Query: 100 LLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDLNIPPEFQQPELSSHFP 159
L ES + EK+EL+EE ++L+S IE+L ++ + R+ P + P S H P
Sbjct: 108 LSQESRELIQEKSELREEKATLKSDIEILNAQYQHRIKTMVPWV--------PHYSYHIP 159
Query: 160 ------GDSYGFP--AAVEPTLSQAPAV 179
G S P A+V P Q +V
Sbjct: 160 FVAITQGQSSFIPYSASVNPLTEQQASV 187
>sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121
PE=2 SV=1
Length = 337
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 67/105 (63%)
Query: 37 KRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKE 96
++ KA REKL+RE LN+ F++L N ++ +P N KA +L + +LLK+L S++ L E
Sbjct: 59 RKSQKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSE 118
Query: 97 NASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKP 141
+L ES +T EKN+L+EE +SL+S IE L + + R+ P
Sbjct: 119 YTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMSP 163
>sp|Q9FH37|ILR3_ARATH Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1
Length = 234
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Query: 41 KAEREKLKREHLNDLFLDLANAVE-VNQPNNGKACVLNEAARLLKDLFSQIESLNKENAS 99
KA REK +R+ LND F++L +E N P KA +L +A R++ L + + L N+S
Sbjct: 76 KACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSS 135
Query: 100 LLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDLNIPPEFQQPELSSHFP 159
L + + EKNEL++E L+++ E L+ +L+A +N P QP S FP
Sbjct: 136 LQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKA--------MNAP----QP---SFFP 180
Query: 160 GDSYGFPAAVEPTLSQAPAVLVVPIHSDLQAYSASDVAQLTSKPASNVSKPHARYP 215
P A QAP +VPI S Y + Q + + S+ H P
Sbjct: 181 APPM-MPTAFASAQGQAPGNKMVPIIS----YPGVAMWQFMPPASVDTSQDHVLRP 231
>sp|Q9LTC7|BH034_ARATH Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2
SV=1
Length = 320
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 7/168 (4%)
Query: 14 NVMVVDASVDGHCPTKKNKS-RVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQ-PNNG 71
+V V + C K+ ++ K KA REKL+RE LND F+DL++ +E + P
Sbjct: 139 SVGAVKEEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGRTPKTD 198
Query: 72 KACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131
K+ +L++A R++ L + L + N LL E + +KNEL+EE L+++ E ++ +
Sbjct: 199 KSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQ 258
Query: 132 LRARVVQSKPDL--NIPPEFQQPELSSHFPGDSYGFPAAVEPTLSQAP 177
L++ VV S + P F +++ +P YG+ P S P
Sbjct: 259 LKSMVVPSPGFMPSQHPAAFHSHKMAVAYP---YGYYPPNMPMWSPLP 303
>sp|Q8L467|BH104_ARATH Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104
PE=2 SV=1
Length = 283
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 7/148 (4%)
Query: 22 VDGHCPTKKNKSRVPKRVH--KAEREKLKREHLNDLFLDLANAVEVNQ-PNNGKACVLNE 78
+D C K+ ++ R KA RE+L+RE LN+ F+DL++ +E + P K +L++
Sbjct: 114 LDDDCSRKRARTGSCSRGGGTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDD 173
Query: 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQ 138
A R+L L + L + N LL E + EKNEL+EE L++ E + +L++
Sbjct: 174 AIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSMTAP 233
Query: 139 SKPDL-NIPPEFQQPELSSHFPGDSYGF 165
S + +IP F +++ +P SYG+
Sbjct: 234 SSGFIPHIPAAFNHNKMAV-YP--SYGY 258
>sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115
PE=2 SV=1
Length = 226
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 17/148 (11%)
Query: 4 ESSASLDEEVNVMVVDASVDGHCPTKKNKSRVPKRVH---------KAEREKLKREHLND 54
+ SA++ EV+ + DA V K+ SR KR+ KA REK +R+ LND
Sbjct: 32 DGSATVSVEVDGFLCDADV-----IKEPSSR--KRIKTESCTGSNSKACREKQRRDRLND 84
Query: 55 LFLDLANAVEVNQ-PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNE 113
F +L++ +E + P K ++N+A R++ + + L N+SL + + EKNE
Sbjct: 85 KFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNE 144
Query: 114 LKEENSSLESQIEVLQSELRARVVQSKP 141
L++E L+ + E + +L+A Q +P
Sbjct: 145 LRDEKQKLKVEKERIDQQLKAIKTQPQP 172
>sp|Q66HH3|LYL1_RAT Protein lyl-1 OS=Rattus norvegicus GN=Lyl1 PE=2 SV=1
Length = 278
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 22 VDGHCPTKKNKSRVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAAR 81
VDGH P K V +RV RE+ +++H+N F +L + + P+ + NE R
Sbjct: 140 VDGHQPQK-----VARRVFTNSRERWRQQHVNGAFAELRKLLPTHPPD--RKLSKNEVLR 192
Query: 82 LLKDLFSQIESLNKENASLLSES 104
L + L ++ A++L+
Sbjct: 193 LAMKYIGFLVRLLRDQAAVLASG 215
>sp|Q4G091|MICLK_RAT MICAL C-terminal-like protein OS=Rattus norvegicus GN=Micalcl PE=2
SV=1
Length = 687
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 32 KSRVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIE 91
K ++P+R K E++ K+E L L A ++ + + + RL K L + +
Sbjct: 510 KEKIPRRRRKLEKQMAKQEELKRLHKAQAIQRQLEEVEERQRTSEIQGVRLEKVLRGETD 569
Query: 92 SLNKENASLLSESHYVTIEKNELKEENSSL-----ESQIEVLQSELRARVVQ 138
S ++ A LL E + +EKN+L S L E ++E QS L ++ Q
Sbjct: 570 SGTQDEAQLLQEWFKLVLEKNKLMRYESELLIMAQELELEDHQSRLEQKLRQ 621
>sp|Q84TK1|BH010_ARATH Transcription factor bHLH10 OS=Arabidopsis thaliana GN=BHLH10 PE=2
SV=1
Length = 458
Score = 35.4 bits (80), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 28 TKKNKSRVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLF 87
T+K + R ERE+ R H ND F DL N + N +A ++ EA +K+L
Sbjct: 237 TRKGRGSRKSRTSPTERER--RVHFNDRFFDLKNLIP-NPTKIDRASIVGEAIDYIKELL 293
Query: 88 SQIESL 93
IE
Sbjct: 294 RTIEEF 299
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1
Length = 1544
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ-SEL 132
CVL++ LLKDL +++E +++ LLSE E EL + S E +E+ Q +E+
Sbjct: 854 CVLSQTP-LLKDLLNRVEDFQQQSQKLLSEEMPSAAELQELL--DVSFEFDVELPQLTEM 910
Query: 133 RARVVQSK 140
R R+ Q++
Sbjct: 911 RIRLEQAR 918
>sp|P27792|LYL1_MOUSE Protein lyl-1 OS=Mus musculus GN=Lyl1 PE=2 SV=2
Length = 278
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 23 DGHCPTKKNKSRVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARL 82
DGH P K V +RV RE+ +++H+N F +L + + P+ + NE RL
Sbjct: 141 DGHQPQK-----VARRVFTNSRERWRQQHVNGAFAELRKLLPTHPPD--RKLSKNEVLRL 193
Query: 83 LKDLFSQIESLNKENASLLSES 104
+ L ++ ++L+
Sbjct: 194 AMKYIGFLVRLLRDQTAVLTSG 215
>sp|Q9TW65|DMD_CAEEL Dystrophin-1 OS=Caenorhabditis elegans GN=dys-1 PE=1 SV=2
Length = 3674
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 1 MGSESSASLDEEVNVM-VVDASVDGHCPTKKNKSRVPKRVHKAEREKLKREHLNDLFLDL 59
M +ES S +E+V ++ V + +K + + +R+ KAE+E E L+D DL
Sbjct: 2748 MLAESLESGNEKVELLKRVGETTRRWTALRKTTNEIGERLEKAEQE---WEKLSDGLADL 2804
Query: 60 ANAVEVN-------QPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESH 105
+ VE QP G + + A +K L +IES S + E+H
Sbjct: 2805 LSWVEAKKQAIMDEQPTGGSLSAVMQQASFVKGLQREIESKTANYKSTVEEAH 2857
>sp|P52161|MAX_DANRE Protein max OS=Danio rerio GN=max PE=2 SV=1
Length = 165
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 19 DASVDGHCPTKKNKSRVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNE 78
D VD + + KR H E+ +R+H+ D F L ++V Q G+ + +
Sbjct: 6 DIEVDSDADSPRFHGVADKRAHHNALERKRRDHIKDSFHSLRDSVPALQ---GEKQSIKQ 62
Query: 79 AAR--LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ-----SE 131
A+R +L I+ + ++N +H I ++LK +N+ LE Q+ L+ ++
Sbjct: 63 ASRAQILDKATEYIQYMRRKN-----HTHQQDI--DDLKRQNALLEQQVRALEKVKGTTQ 115
Query: 132 LRARVVQSKPDLNIPPEFQ 150
L+A S L P+ Q
Sbjct: 116 LQANYSSSDSSLYTNPKGQ 134
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1
Length = 1522
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133
CVL++ LLKDL ++E+ +++ LLSE E EL + + + + L +ELR
Sbjct: 829 CVLSQTP-LLKDLLDRVEAFQQQSQKLLSEEMPSAAELQELLDVSFDFDVDLPQL-AELR 886
Query: 134 ARVVQSK 140
R+ Q++
Sbjct: 887 VRLEQAR 893
>sp|Q9LUK7|BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2
SV=1
Length = 511
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 37 KRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKE 96
K ++ E E+++RE LN F L V PN K + LL+D I L +
Sbjct: 340 KPLNHVEAERMRREKLNHRFYALRAVV----PNVSKM----DKTSLLEDAVCYINELKSK 391
Query: 97 NASLLSESHYVTIEKNELKE 116
++ E H + I+ NELKE
Sbjct: 392 AENVELEKHAIEIQFNELKE 411
>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2
Length = 315
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE-VLQSELRARVVQ 138
L ++ESL+ EN SL E ++ E ++LK EN+S++ +++ VL +E A + Q
Sbjct: 250 LQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQRVLGAEAVANLEQ 303
>sp|O60271|JIP4_HUMAN C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens
GN=SPAG9 PE=1 SV=4
Length = 1321
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 64 EVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLES 123
E++ +G ++E A LL + ++E+L EN LL + + I KN+L + L
Sbjct: 385 ELSSAGSGLIGDVDEGADLL-GMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTC 443
Query: 124 QIEVLQSELRARVVQSK 140
+ +VLQ EL A V Q+K
Sbjct: 444 EKDVLQGELEA-VKQAK 459
>sp|Q10186|YAWC_SCHPO Uncharacterized bHLH domain-containing protein C3F10.12c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC3F10.12c PE=4 SV=1
Length = 201
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 37 KRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKE 96
KR+ E E+ +RE +++ +LAN V + N G +L A+ ++ L ++E + +E
Sbjct: 89 KRLSHKEVERRRREAISEGIKELANIVPGCEKNKGS--ILQRTAQYIRSL-KEMEEMCRE 145
Query: 97 NASL--LSESHYVTIEKNELKEENSSLESQIE 126
++L L H + EL EN+ L+S+ E
Sbjct: 146 KSNLEKLVADHTI----QELARENARLKSECE 173
>sp|Q6ZW33|MICLK_HUMAN MICAL C-terminal-like protein OS=Homo sapiens GN=MICALCL PE=2 SV=3
Length = 695
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 30 KNKSRVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQ 89
K R K++ KA ++ +K+E L L+ A ++ + + + RL K L +
Sbjct: 516 KKTLRRRKKLEKAMKQLVKQEELKRLYKAQAIQRQLEEVEERQRASEIQGVRLEKALRGE 575
Query: 90 IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSK 140
+S ++ A LL E + +EKN+L ES++ ++ EL QS+
Sbjct: 576 ADSGTQDEAQLLQEWFKLVLEKNKL----MRYESELLIMAQELELEDHQSR 622
>sp|Q8J1G4|KIP1_ASHGO Kinesin-like protein KIP1 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=KIP1 PE=3 SV=1
Length = 1129
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 26/147 (17%)
Query: 59 LANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKE-NASLLSESHYVTIEKNELKEE 117
+ N +VNQ ++C++ + +IE L KE AS E Y+T EK E E
Sbjct: 417 IKNTPQVNQLMAKESCII--------EYIQEIERLRKELRASHSKEGIYITQEKFETYES 468
Query: 118 NSSL----ESQIEVLQSELRARVVQSKPDLNIPPEF-QQPELSSHFPGDSYGFPAAVEPT 172
NS L +++I+ LQ +LR + +F +Q +L G A
Sbjct: 469 NSILVEEQQAKIDNLQEQLR----------RLKEKFLEQTKLIKEKDGQIKELDVANRKY 518
Query: 173 LSQAP--AVLVVPIHSDLQAYSASDVA 197
L Q+ + + IHS L+ Y + +
Sbjct: 519 LEQSKDLTIYINGIHSKLEDYEHTMIG 545
>sp|Q7TS99|HELT_MOUSE Hairy and enhancer of split-related protein HELT OS=Mus musculus
GN=Helt PE=1 SV=1
Length = 240
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 105 HYVT-IEKNELKEENSSLESQIEVLQSELRARVVQSKPDLNIP-PEFQQ------PELSS 156
HY+T +E+ E K ++ + LQS+ R + P L++P P+F PE
Sbjct: 99 HYLTTVERMETK--DTKYARILAFLQSKARLGAEPTFPPLSLPEPDFSYQLHAASPEFPG 156
Query: 157 HFPGDSYGFPAAVEP 171
H PG++ FP P
Sbjct: 157 HSPGEATMFPQGATP 171
>sp|Q58A65|JIP4_MOUSE C-Jun-amino-terminal kinase-interacting protein 4 OS=Mus musculus
GN=Spag9 PE=1 SV=2
Length = 1321
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 64 EVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLES 123
E++ +G ++E A LL + ++E+L EN LL + + + KN+L + L
Sbjct: 385 ELSSAGSGLIGDVDEGADLL-GMGREVENLILENTQLLETKNALNVVKNDLIAKVDELTC 443
Query: 124 QIEVLQSELRARVVQSKPDL 143
+ +VLQ EL A V Q+K L
Sbjct: 444 EKDVLQGELEA-VKQAKLKL 462
>sp|Q9D5U9|MICLK_MOUSE MICAL C-terminal-like protein OS=Mus musculus GN=Micalcl PE=1 SV=2
Length = 680
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 32 KSRVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIE 91
K ++ +R K E++ K+E L L A ++ + + + + +L K L + +
Sbjct: 503 KEKILRRRRKLEKQSAKQEELKRLHKAQAIQRQLEEVEERQRTLAIQGVKLEKVLRGEAD 562
Query: 92 SLNKENASLLSESHYVTIEKNELKEENSSL-----ESQIEVLQSELRARVVQ 138
S ++ A LL E + +EKN+L S L E ++E QS L ++ Q
Sbjct: 563 SGTQDEAQLLQEWFKLVLEKNKLMRYESELLIMAQELELEDHQSRLEQKLRQ 614
>sp|Q8VDS4|RPR1A_MOUSE Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Mus
musculus GN=Rprd1a PE=2 SV=1
Length = 312
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 106 YVTIEKNELKEENSSLE------SQIEVLQSELRARVVQSKPDLNIPPEFQQPELSSHFP 159
++ +K L E+ LE +++ +++ ELRAR+ QS PDL+ P + F
Sbjct: 247 FLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRARI-QSLPDLSRLPNVTGSHMHLPFA 305
Query: 160 GDSY 163
GD Y
Sbjct: 306 GDIY 309
>sp|Q9UGL1|KDM5B_HUMAN Lysine-specific demethylase 5B OS=Homo sapiens GN=KDM5B PE=1 SV=3
Length = 1544
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ-SEL 132
CVL++ LLKDL +++E + + LLSE E +L + S E +E+ Q +E+
Sbjct: 854 CVLSQTP-LLKDLLNRVEDFQQHSQKLLSEETPSAAELQDLL--DVSFEFDVELPQLAEM 910
Query: 133 RARVVQSK 140
R R+ Q++
Sbjct: 911 RIRLEQAR 918
>sp|Q805A1|SMC5_XENLA Structural maintenance of chromosomes protein 5 OS=Xenopus laevis
GN=smc5 PE=2 SV=1
Length = 1065
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 48 KREHLNDLFLDLANAVEVNQPNNGKACVLN-EAARLLKDLF---SQIESLNKENASLLSE 103
K + LN L D N EV Q N + LN + A+L+KDL + SL+ E L +
Sbjct: 694 KYDSLNRLEQDNLNLEEVQQQANNRIKNLNVQKAKLVKDLLELMKECTSLSIEKVELALQ 753
Query: 104 SHYVTIEKNELKEENSSLESQIEVLQSE 131
S ++ EKN+++ + S SQ+ L+++
Sbjct: 754 STAISSEKNKIESDYKSATSQLRELKNQ 781
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.124 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,453,115
Number of Sequences: 539616
Number of extensions: 3347101
Number of successful extensions: 13937
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 13526
Number of HSP's gapped (non-prelim): 711
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)