Query 026212
Match_columns 241
No_of_seqs 172 out of 351
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 2.9E-12 6.3E-17 89.3 4.9 56 36-91 3-60 (60)
2 smart00353 HLH helix loop heli 99.3 9.5E-12 2.1E-16 85.5 5.6 50 42-91 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 6.1E-12 1.3E-16 87.8 4.4 51 37-87 1-55 (55)
4 KOG1318 Helix loop helix trans 99.0 3.6E-10 7.9E-15 108.5 6.9 59 36-94 232-293 (411)
5 KOG1319 bHLHZip transcription 98.4 4.1E-07 8.9E-12 80.6 5.9 80 33-113 58-144 (229)
6 KOG2483 Upstream transcription 98.0 3.7E-05 8E-10 69.5 8.8 81 34-129 56-139 (232)
7 KOG3561 Aryl-hydrocarbon recep 97.9 9.5E-06 2.1E-10 83.9 4.7 51 38-89 21-75 (803)
8 KOG4304 Transcriptional repres 97.8 1.9E-05 4.1E-10 71.8 3.4 58 34-92 29-94 (250)
9 KOG2588 Predicted DNA-binding 97.3 0.00021 4.6E-09 74.9 4.7 66 36-101 275-340 (953)
10 KOG0561 bHLH transcription fac 97.3 0.0002 4.3E-09 67.6 3.4 62 38-100 61-124 (373)
11 PRK15422 septal ring assembly 97.0 0.003 6.5E-08 49.0 7.2 62 76-137 13-74 (79)
12 KOG3960 Myogenic helix-loop-he 96.9 0.0022 4.8E-08 59.2 6.2 58 37-94 118-176 (284)
13 COG3074 Uncharacterized protei 96.8 0.0079 1.7E-07 46.2 7.4 61 76-136 13-73 (79)
14 PF06005 DUF904: Protein of un 96.4 0.015 3.3E-07 44.0 7.1 52 78-136 15-66 (72)
15 PF06005 DUF904: Protein of un 96.3 0.016 3.5E-07 43.9 6.6 55 80-134 3-57 (72)
16 KOG4029 Transcription factor H 96.2 0.007 1.5E-07 53.5 4.6 57 37-94 109-169 (228)
17 TIGR02894 DNA_bind_RsfA transc 95.7 0.037 8E-07 48.0 6.9 62 76-137 82-146 (161)
18 KOG4005 Transcription factor X 95.7 0.079 1.7E-06 49.0 9.2 91 37-134 60-150 (292)
19 PLN03217 transcription factor 94.7 0.082 1.8E-06 42.0 5.5 57 46-103 16-78 (93)
20 smart00338 BRLZ basic region l 94.1 0.079 1.7E-06 38.2 3.9 39 80-118 25-63 (65)
21 KOG3910 Helix loop helix trans 94.1 0.031 6.8E-07 56.0 2.4 49 44-92 533-584 (632)
22 PRK11637 AmiB activator; Provi 94.1 0.26 5.7E-06 47.1 8.6 68 74-141 68-135 (428)
23 PF06156 DUF972: Protein of un 93.9 0.15 3.3E-06 41.2 5.6 52 84-135 4-55 (107)
24 PF00170 bZIP_1: bZIP transcri 93.8 0.11 2.3E-06 37.5 4.1 34 81-114 26-59 (64)
25 PF07106 TBPIP: Tat binding pr 93.7 0.15 3.1E-06 43.0 5.4 54 83-136 81-136 (169)
26 KOG2264 Exostosin EXT1L [Signa 93.4 0.42 9.1E-06 49.2 9.0 69 82-150 94-162 (907)
27 PF04880 NUDE_C: NUDE protein, 93.3 0.076 1.7E-06 46.1 3.1 46 83-132 2-47 (166)
28 COG3883 Uncharacterized protei 92.9 0.39 8.6E-06 44.6 7.4 65 70-134 34-98 (265)
29 PRK10884 SH3 domain-containing 92.7 0.37 8E-06 42.9 6.7 80 46-134 92-171 (206)
30 PF12325 TMF_TATA_bd: TATA ele 92.7 0.4 8.7E-06 39.5 6.3 51 78-128 13-63 (120)
31 PRK15422 septal ring assembly 92.5 0.45 9.7E-06 37.1 6.0 52 80-131 3-54 (79)
32 TIGR03752 conj_TIGR03752 integ 92.4 0.37 8.1E-06 48.0 6.8 57 76-132 61-132 (472)
33 COG4026 Uncharacterized protei 92.0 0.5 1.1E-05 43.7 6.7 60 77-136 131-190 (290)
34 KOG3558 Hypoxia-inducible fact 91.7 0.23 4.9E-06 51.6 4.6 40 44-84 53-96 (768)
35 PRK13169 DNA replication intia 91.7 0.47 1E-05 38.7 5.5 51 84-134 4-54 (110)
36 KOG3559 Transcriptional regula 91.3 0.2 4.3E-06 49.7 3.5 39 46-85 10-52 (598)
37 TIGR02449 conserved hypothetic 90.7 0.87 1.9E-05 34.1 5.7 54 82-135 8-61 (65)
38 COG5570 Uncharacterized small 90.5 0.44 9.6E-06 34.8 3.9 45 88-132 5-56 (57)
39 PF14197 Cep57_CLD_2: Centroso 90.3 1.1 2.4E-05 33.6 6.0 53 83-135 7-66 (69)
40 PHA02562 46 endonuclease subun 90.1 1.3 2.9E-05 42.9 8.0 76 48-129 331-406 (562)
41 COG3883 Uncharacterized protei 89.9 1.1 2.4E-05 41.7 7.0 54 81-134 38-91 (265)
42 PRK10884 SH3 domain-containing 89.6 3 6.5E-05 37.2 9.2 29 105-133 128-156 (206)
43 PF08317 Spc7: Spc7 kinetochor 89.5 2.4 5.3E-05 39.5 9.0 84 47-132 184-267 (325)
44 PF11559 ADIP: Afadin- and alp 89.3 5.3 0.00012 32.9 10.0 79 43-134 48-126 (151)
45 PRK11637 AmiB activator; Provi 88.9 1.5 3.2E-05 42.0 7.3 57 79-135 66-122 (428)
46 PRK13729 conjugal transfer pil 88.8 6.1 0.00013 39.7 11.6 57 78-134 66-122 (475)
47 PF10224 DUF2205: Predicted co 88.0 1.1 2.3E-05 34.8 4.6 45 84-128 19-63 (80)
48 PF02403 Seryl_tRNA_N: Seryl-t 87.9 2.2 4.8E-05 33.2 6.5 52 84-135 39-100 (108)
49 PF08614 ATG16: Autophagy prot 87.7 2.1 4.5E-05 37.1 6.8 82 47-134 88-169 (194)
50 PF13851 GAS: Growth-arrest sp 87.1 2.8 6E-05 37.0 7.3 62 74-135 20-81 (201)
51 PRK13169 DNA replication intia 87.0 2 4.4E-05 35.1 6.0 51 80-130 7-57 (110)
52 PF13870 DUF4201: Domain of un 86.9 4.6 0.0001 34.2 8.4 60 76-135 72-131 (177)
53 PRK04406 hypothetical protein; 86.9 4 8.7E-05 31.0 7.2 51 85-135 8-58 (75)
54 COG3074 Uncharacterized protei 86.7 2.3 4.9E-05 32.9 5.7 52 80-131 3-54 (79)
55 PF08317 Spc7: Spc7 kinetochor 86.4 2 4.2E-05 40.1 6.3 47 88-134 216-262 (325)
56 PF14662 CCDC155: Coiled-coil 86.3 2.6 5.7E-05 37.7 6.8 33 102-134 95-127 (193)
57 PF07989 Microtub_assoc: Micro 86.3 2.6 5.7E-05 32.1 5.9 52 83-134 2-61 (75)
58 PF11559 ADIP: Afadin- and alp 86.2 6 0.00013 32.6 8.5 83 50-132 5-89 (151)
59 PF06156 DUF972: Protein of un 86.2 2.2 4.8E-05 34.5 5.7 51 80-130 7-57 (107)
60 PF02183 HALZ: Homeobox associ 86.0 1 2.3E-05 31.2 3.3 25 108-132 18-42 (45)
61 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.9 3.3 7.2E-05 33.8 6.8 58 76-133 54-115 (132)
62 PRK02119 hypothetical protein; 85.9 3.1 6.7E-05 31.4 6.1 53 83-135 4-56 (73)
63 PF07888 CALCOCO1: Calcium bin 85.9 4.4 9.6E-05 41.3 8.9 37 100-136 422-458 (546)
64 KOG3560 Aryl-hydrocarbon recep 85.8 0.68 1.5E-05 47.4 3.2 45 39-84 27-75 (712)
65 PF05377 FlaC_arch: Flagella a 85.6 2.4 5.2E-05 31.0 5.1 27 109-135 14-40 (55)
66 smart00787 Spc7 Spc7 kinetocho 85.5 4.9 0.00011 37.9 8.5 86 46-133 178-263 (312)
67 PF04977 DivIC: Septum formati 85.4 2.1 4.6E-05 30.9 4.9 46 83-135 19-64 (80)
68 PF14662 CCDC155: Coiled-coil 85.4 3 6.5E-05 37.3 6.7 60 75-134 54-113 (193)
69 PF02183 HALZ: Homeobox associ 85.2 1.1 2.4E-05 31.1 3.1 29 105-133 8-36 (45)
70 PF00170 bZIP_1: bZIP transcri 85.1 3 6.4E-05 29.9 5.4 36 97-132 28-63 (64)
71 PF05529 Bap31: B-cell recepto 84.8 3.1 6.7E-05 35.6 6.4 24 110-133 162-185 (192)
72 PF04325 DUF465: Protein of un 84.7 2.4 5.2E-05 29.3 4.6 46 85-130 3-48 (49)
73 PRK00295 hypothetical protein; 84.7 5.8 0.00013 29.5 7.0 50 86-135 3-52 (68)
74 PF10146 zf-C4H2: Zinc finger- 84.5 3.2 6.9E-05 37.7 6.5 59 78-136 29-101 (230)
75 COG1340 Uncharacterized archae 83.8 5.7 0.00012 37.6 8.1 74 47-133 27-100 (294)
76 TIGR02894 DNA_bind_RsfA transc 83.8 2.3 5E-05 37.1 5.1 58 76-133 92-149 (161)
77 COG4467 Regulator of replicati 83.6 2.8 6E-05 34.7 5.2 49 84-132 4-52 (114)
78 PRK04325 hypothetical protein; 83.5 5.8 0.00013 30.0 6.6 52 84-135 5-56 (74)
79 PF13851 GAS: Growth-arrest sp 83.4 5.9 0.00013 34.9 7.7 67 70-137 83-171 (201)
80 PRK13922 rod shape-determining 83.2 2.2 4.7E-05 38.4 4.9 25 78-102 66-90 (276)
81 PF10482 CtIP_N: Tumour-suppre 83.2 2 4.4E-05 35.8 4.3 50 76-125 69-119 (120)
82 COG2433 Uncharacterized conser 83.1 3.3 7.1E-05 42.8 6.6 43 76-118 417-459 (652)
83 PRK02793 phi X174 lysis protei 83.1 6.3 0.00014 29.6 6.6 51 85-135 5-55 (72)
84 PF13815 Dzip-like_N: Iguana/D 83.1 2.8 6.1E-05 33.8 5.1 55 75-132 63-117 (118)
85 PF10473 CENP-F_leu_zip: Leuci 82.8 5.2 0.00011 33.9 6.8 45 91-135 48-92 (140)
86 PF07106 TBPIP: Tat binding pr 82.7 3.5 7.5E-05 34.7 5.7 52 83-134 74-127 (169)
87 PF12329 TMF_DNA_bd: TATA elem 82.6 6 0.00013 29.9 6.4 57 78-134 9-65 (74)
88 PTZ00454 26S protease regulato 82.4 1.7 3.8E-05 41.9 4.2 55 73-134 7-61 (398)
89 TIGR02449 conserved hypothetic 82.4 6 0.00013 29.7 6.2 55 83-137 2-56 (65)
90 PF12325 TMF_TATA_bd: TATA ele 82.2 7.5 0.00016 32.1 7.3 64 73-136 15-88 (120)
91 TIGR02231 conserved hypothetic 82.2 4.8 0.0001 39.6 7.3 83 50-135 74-171 (525)
92 KOG0977 Nuclear envelope prote 82.1 4.2 9E-05 41.4 6.9 36 100-135 153-188 (546)
93 PF07716 bZIP_2: Basic region 82.0 2.1 4.5E-05 30.0 3.5 28 103-130 26-53 (54)
94 smart00338 BRLZ basic region l 81.6 2.3 5.1E-05 30.5 3.7 31 104-134 28-58 (65)
95 PF07798 DUF1640: Protein of u 81.5 8.2 0.00018 33.0 7.6 29 108-136 72-100 (177)
96 PF10186 Atg14: UV radiation r 81.5 5.2 0.00011 35.3 6.6 9 123-131 126-134 (302)
97 PF05565 Sipho_Gp157: Siphovir 81.4 17 0.00037 30.9 9.5 84 51-137 5-89 (162)
98 PF04156 IncA: IncA protein; 81.3 7.5 0.00016 32.8 7.3 50 82-131 124-173 (191)
99 PF05008 V-SNARE: Vesicle tran 81.2 4.8 0.0001 29.6 5.4 58 70-133 21-78 (79)
100 PRK00846 hypothetical protein; 81.2 9.1 0.0002 29.6 7.0 51 85-135 10-60 (77)
101 PF04102 SlyX: SlyX; InterPro 81.1 3.8 8.2E-05 30.3 4.7 50 86-135 2-51 (69)
102 PHA03011 hypothetical protein; 81.0 6.6 0.00014 32.4 6.5 60 75-134 58-117 (120)
103 PRK09039 hypothetical protein; 80.8 6.6 0.00014 37.2 7.5 55 74-128 130-184 (343)
104 PF05667 DUF812: Protein of un 80.7 3.4 7.4E-05 42.3 5.8 60 76-135 323-382 (594)
105 PF08172 CASP_C: CASP C termin 80.6 3.5 7.6E-05 37.8 5.3 53 82-134 80-132 (248)
106 PRK13729 conjugal transfer pil 80.4 2.7 5.8E-05 42.2 4.8 59 73-131 68-126 (475)
107 PF02403 Seryl_tRNA_N: Seryl-t 80.1 12 0.00027 28.9 7.6 57 79-135 27-93 (108)
108 PF11932 DUF3450: Protein of u 80.0 7.9 0.00017 34.6 7.3 14 132-145 114-127 (251)
109 PHA02562 46 endonuclease subun 80.0 5.2 0.00011 38.8 6.6 21 114-134 384-404 (562)
110 PF04977 DivIC: Septum formati 79.7 4.9 0.00011 28.9 5.0 29 100-128 22-50 (80)
111 PF10805 DUF2730: Protein of u 79.5 9.6 0.00021 30.4 6.9 52 83-134 44-97 (106)
112 PF05266 DUF724: Protein of un 79.0 8.5 0.00018 33.9 7.1 17 117-133 160-176 (190)
113 COG4026 Uncharacterized protei 78.8 6.5 0.00014 36.6 6.4 29 100-128 168-196 (290)
114 PRK09039 hypothetical protein; 78.6 5.2 0.00011 37.9 6.0 63 76-138 125-187 (343)
115 KOG4447 Transcription factor T 78.5 1.3 2.8E-05 38.7 1.8 46 38-84 79-126 (173)
116 PF09789 DUF2353: Uncharacteri 78.2 17 0.00037 34.8 9.3 41 69-109 67-107 (319)
117 PF07798 DUF1640: Protein of u 78.2 14 0.0003 31.6 8.0 30 107-136 111-140 (177)
118 PF04728 LPP: Lipoprotein leuc 78.1 7.2 0.00016 28.6 5.3 46 83-135 5-50 (56)
119 PF14197 Cep57_CLD_2: Centroso 77.7 8 0.00017 29.0 5.6 40 90-129 28-67 (69)
120 PRK00888 ftsB cell division pr 77.3 4.4 9.5E-05 32.4 4.4 48 82-136 28-75 (105)
121 PF04420 CHD5: CHD5-like prote 77.3 10 0.00023 32.1 6.9 56 77-134 36-91 (161)
122 smart00787 Spc7 Spc7 kinetocho 77.3 6.8 0.00015 36.9 6.3 52 83-134 206-257 (312)
123 COG3937 Uncharacterized conser 76.8 9.3 0.0002 31.4 6.2 58 76-133 41-107 (108)
124 PF07334 IFP_35_N: Interferon- 76.8 2.6 5.6E-05 32.6 2.8 26 112-137 3-28 (76)
125 KOG0250 DNA repair protein RAD 76.7 13 0.00027 40.8 8.7 84 46-134 371-454 (1074)
126 PF07889 DUF1664: Protein of u 76.7 7.1 0.00015 32.6 5.6 51 84-134 64-114 (126)
127 KOG3584 cAMP response element 76.5 1.9 4.2E-05 41.1 2.5 29 81-109 312-340 (348)
128 KOG3650 Predicted coiled-coil 76.4 5.9 0.00013 32.6 4.9 40 89-128 64-103 (120)
129 PF05103 DivIVA: DivIVA protei 76.1 1.6 3.4E-05 34.6 1.5 47 78-124 22-68 (131)
130 KOG3650 Predicted coiled-coil 76.1 4.4 9.5E-05 33.3 4.1 60 78-137 46-105 (120)
131 KOG1962 B-cell receptor-associ 76.0 15 0.00034 33.3 8.0 53 82-134 159-211 (216)
132 KOG0250 DNA repair protein RAD 76.0 7.5 0.00016 42.5 6.9 55 77-131 361-416 (1074)
133 PF09744 Jnk-SapK_ap_N: JNK_SA 75.2 19 0.00041 31.0 8.0 55 82-136 90-144 (158)
134 TIGR00219 mreC rod shape-deter 75.1 5.7 0.00012 36.7 5.1 43 78-123 63-105 (283)
135 KOG0996 Structural maintenance 74.9 18 0.00039 40.2 9.4 81 52-134 804-896 (1293)
136 PF10234 Cluap1: Clusterin-ass 74.9 6 0.00013 36.9 5.2 60 84-150 165-224 (267)
137 KOG2391 Vacuolar sorting prote 74.7 4.4 9.6E-05 39.3 4.4 25 109-133 239-263 (365)
138 PF11932 DUF3450: Protein of u 74.5 13 0.00028 33.2 7.1 50 85-134 39-95 (251)
139 PF14282 FlxA: FlxA-like prote 74.4 6.4 0.00014 31.4 4.6 55 80-134 18-76 (106)
140 PF12718 Tropomyosin_1: Tropom 74.1 7.9 0.00017 32.5 5.3 33 78-110 11-43 (143)
141 KOG3119 Basic region leucine z 74.0 18 0.0004 33.2 8.1 14 41-54 191-204 (269)
142 PF05377 FlaC_arch: Flagella a 74.0 6.2 0.00013 28.8 4.0 53 90-142 2-54 (55)
143 PRK00888 ftsB cell division pr 73.9 6.3 0.00014 31.5 4.5 32 99-130 31-62 (105)
144 PF10186 Atg14: UV radiation r 73.9 8.3 0.00018 34.0 5.7 23 113-135 123-145 (302)
145 KOG0982 Centrosomal protein Nu 73.9 10 0.00022 38.1 6.7 59 76-134 277-336 (502)
146 PRK00736 hypothetical protein; 73.8 16 0.00035 27.2 6.3 50 86-135 3-52 (68)
147 PF00038 Filament: Intermediat 73.7 17 0.00037 32.9 7.8 52 83-134 225-280 (312)
148 KOG0977 Nuclear envelope prote 73.7 10 0.00022 38.7 6.9 50 83-132 143-192 (546)
149 PF12718 Tropomyosin_1: Tropom 73.6 14 0.00029 31.1 6.6 24 109-132 35-58 (143)
150 PF12808 Mto2_bdg: Micro-tubul 73.5 10 0.00022 27.4 4.9 44 86-129 6-49 (52)
151 TIGR01834 PHA_synth_III_E poly 73.5 9.7 0.00021 36.4 6.3 61 71-131 253-318 (320)
152 PF06810 Phage_GP20: Phage min 73.5 8.7 0.00019 32.7 5.5 15 118-132 53-67 (155)
153 PF14282 FlxA: FlxA-like prote 73.4 11 0.00024 30.0 5.8 49 87-135 18-70 (106)
154 PF04728 LPP: Lipoprotein leuc 73.4 16 0.00034 26.9 6.0 22 83-104 12-33 (56)
155 PF05837 CENP-H: Centromere pr 73.3 18 0.00039 28.8 6.9 57 77-134 13-69 (106)
156 PRK14011 prefoldin subunit alp 73.3 12 0.00025 31.8 6.2 53 76-134 86-138 (144)
157 TIGR00606 rad50 rad50. This fa 73.3 13 0.00029 40.8 8.1 83 48-133 992-1085(1311)
158 PRK05431 seryl-tRNA synthetase 73.0 19 0.00041 35.1 8.3 60 83-143 37-106 (425)
159 PF08614 ATG16: Autophagy prot 72.9 8.1 0.00018 33.4 5.3 49 85-133 134-182 (194)
160 KOG4196 bZIP transcription fac 72.9 11 0.00024 32.1 5.8 22 113-134 92-113 (135)
161 COG4942 Membrane-bound metallo 72.8 15 0.00032 36.5 7.6 50 83-132 61-110 (420)
162 PF10805 DUF2730: Protein of u 72.8 9.6 0.00021 30.4 5.3 48 87-134 34-83 (106)
163 PF09304 Cortex-I_coil: Cortex 72.7 11 0.00024 31.0 5.6 42 84-125 40-81 (107)
164 PF10211 Ax_dynein_light: Axon 72.6 19 0.00041 31.5 7.5 12 48-59 60-71 (189)
165 PF08826 DMPK_coil: DMPK coile 72.5 22 0.00047 26.3 6.7 54 75-128 5-58 (61)
166 COG1579 Zn-ribbon protein, pos 72.5 9.7 0.00021 35.0 5.9 42 84-125 92-133 (239)
167 COG2919 Septum formation initi 72.3 28 0.00061 28.1 7.9 80 42-135 17-97 (117)
168 PF05529 Bap31: B-cell recepto 72.2 15 0.00032 31.5 6.7 29 102-130 161-189 (192)
169 PF07716 bZIP_2: Basic region 72.1 5.6 0.00012 27.8 3.4 30 81-110 25-54 (54)
170 PRK05771 V-type ATP synthase s 71.8 14 0.00031 37.4 7.5 41 103-147 94-134 (646)
171 PF15035 Rootletin: Ciliary ro 71.7 17 0.00037 31.8 7.0 62 74-135 60-121 (182)
172 PF10224 DUF2205: Predicted co 71.4 15 0.00032 28.6 5.8 50 88-137 16-65 (80)
173 PF06103 DUF948: Bacterial pro 71.4 26 0.00057 26.4 7.2 38 81-118 26-63 (90)
174 PF08172 CASP_C: CASP C termin 71.3 11 0.00023 34.6 5.9 61 70-130 75-135 (248)
175 PF09304 Cortex-I_coil: Cortex 71.3 11 0.00023 31.0 5.3 42 84-125 33-74 (107)
176 PF03962 Mnd1: Mnd1 family; I 71.2 7.4 0.00016 34.0 4.7 20 114-133 108-127 (188)
177 COG4942 Membrane-bound metallo 70.7 12 0.00026 37.0 6.5 18 117-134 88-105 (420)
178 PF15294 Leu_zip: Leucine zipp 70.4 7.1 0.00015 36.7 4.6 45 86-130 130-174 (278)
179 PF09789 DUF2353: Uncharacteri 70.4 10 0.00022 36.2 5.7 51 86-136 131-181 (319)
180 PF14257 DUF4349: Domain of un 70.2 26 0.00055 31.4 8.0 62 69-135 127-188 (262)
181 PF06632 XRCC4: DNA double-str 69.8 19 0.00041 34.6 7.4 42 75-116 131-172 (342)
182 PF15070 GOLGA2L5: Putative go 69.7 9.3 0.0002 39.3 5.6 53 82-134 16-68 (617)
183 PLN02678 seryl-tRNA synthetase 68.8 26 0.00056 34.8 8.3 39 104-143 73-111 (448)
184 PRK03992 proteasome-activating 68.6 8.7 0.00019 36.6 4.9 44 84-134 4-47 (389)
185 TIGR02209 ftsL_broad cell divi 68.5 32 0.0007 25.3 7.0 41 92-133 28-68 (85)
186 PF07200 Mod_r: Modifier of ru 68.5 29 0.00062 28.4 7.3 61 76-136 29-89 (150)
187 PF00769 ERM: Ezrin/radixin/mo 68.4 14 0.00029 33.6 5.9 57 78-134 58-114 (246)
188 PF14988 DUF4515: Domain of un 68.4 18 0.00039 32.2 6.5 60 72-133 142-201 (206)
189 PF05266 DUF724: Protein of un 68.2 21 0.00046 31.4 6.9 23 112-134 162-184 (190)
190 TIGR00606 rad50 rad50. This fa 68.1 24 0.00053 38.8 8.7 86 46-134 849-934 (1311)
191 PRK14127 cell division protein 68.0 20 0.00043 29.3 6.1 22 112-133 47-68 (109)
192 PF07926 TPR_MLP1_2: TPR/MLP1/ 67.8 16 0.00034 29.9 5.6 22 76-97 61-82 (132)
193 KOG2391 Vacuolar sorting prote 67.6 17 0.00037 35.4 6.6 11 39-49 211-221 (365)
194 PF09738 DUF2051: Double stran 67.5 15 0.00032 34.8 6.1 64 68-135 103-166 (302)
195 PF13747 DUF4164: Domain of un 67.5 19 0.00041 28.1 5.7 17 82-98 9-25 (89)
196 TIGR01554 major_cap_HK97 phage 67.3 10 0.00022 35.6 5.1 58 49-109 5-62 (378)
197 KOG3433 Protein involved in me 67.3 16 0.00035 32.9 5.9 72 58-129 47-143 (203)
198 PF07200 Mod_r: Modifier of ru 67.2 15 0.00032 30.1 5.4 54 82-135 28-81 (150)
199 COG0216 PrfA Protein chain rel 67.0 35 0.00077 33.3 8.6 86 50-136 10-103 (363)
200 PF10146 zf-C4H2: Zinc finger- 67.0 19 0.00041 32.7 6.5 44 88-131 60-103 (230)
201 PF09755 DUF2046: Uncharacteri 66.7 19 0.00042 34.4 6.7 38 84-121 51-96 (310)
202 KOG3898 Transcription factor N 66.5 3.9 8.5E-05 37.4 2.1 49 37-86 72-123 (254)
203 PF12709 Kinetocho_Slk19: Cent 66.4 29 0.00062 27.6 6.6 50 86-135 32-82 (87)
204 KOG0946 ER-Golgi vesicle-tethe 66.4 17 0.00036 39.2 6.7 59 75-133 658-716 (970)
205 PF15619 Lebercilin: Ciliary p 66.0 37 0.00079 30.0 7.9 31 105-135 160-190 (194)
206 COG2919 Septum formation initi 65.9 14 0.00031 29.8 5.0 39 99-137 54-95 (117)
207 PRK00409 recombination and DNA 65.8 16 0.00036 38.3 6.6 13 121-133 582-594 (782)
208 PF07352 Phage_Mu_Gam: Bacteri 65.6 29 0.00062 28.9 6.9 56 76-137 5-60 (149)
209 PF04325 DUF465: Protein of un 65.6 11 0.00023 26.0 3.7 42 82-123 7-48 (49)
210 PF03962 Mnd1: Mnd1 family; I 65.5 16 0.00035 32.0 5.6 20 107-126 108-127 (188)
211 COG1340 Uncharacterized archae 65.5 22 0.00047 33.8 6.7 40 95-134 48-87 (294)
212 PRK02224 chromosome segregatio 65.3 28 0.00062 36.0 8.2 52 81-132 349-400 (880)
213 TIGR00414 serS seryl-tRNA synt 65.3 20 0.00044 34.8 6.7 53 84-136 40-103 (418)
214 KOG3977 Troponin I [Cytoskelet 65.1 32 0.0007 31.3 7.4 70 44-116 61-137 (221)
215 PTZ00454 26S protease regulato 64.9 13 0.00028 36.0 5.3 42 80-121 21-62 (398)
216 PF06632 XRCC4: DNA double-str 64.8 16 0.00035 35.0 5.9 31 85-115 148-178 (342)
217 PF06103 DUF948: Bacterial pro 64.7 51 0.0011 24.8 7.6 55 79-133 17-71 (90)
218 PF14257 DUF4349: Domain of un 64.7 18 0.00039 32.3 5.9 49 83-136 134-182 (262)
219 COG1730 GIM5 Predicted prefold 64.6 14 0.00031 31.5 4.9 43 76-121 92-134 (145)
220 PF04156 IncA: IncA protein; 64.5 33 0.00071 29.0 7.1 59 76-134 125-183 (191)
221 PF04849 HAP1_N: HAP1 N-termin 64.5 16 0.00036 34.8 5.8 18 117-134 235-252 (306)
222 PRK10803 tol-pal system protei 64.3 19 0.0004 32.9 6.0 32 99-130 58-89 (263)
223 PRK04863 mukB cell division pr 64.2 17 0.00037 41.1 6.7 89 46-135 948-1039(1486)
224 PRK13922 rod shape-determining 64.2 25 0.00054 31.6 6.7 39 91-133 72-110 (276)
225 PLN02320 seryl-tRNA synthetase 64.0 35 0.00075 34.6 8.3 61 83-144 102-171 (502)
226 COG2433 Uncharacterized conser 63.4 14 0.00031 38.4 5.5 35 81-115 429-463 (652)
227 PRK11415 hypothetical protein; 63.3 21 0.00044 26.9 5.1 18 111-128 48-65 (74)
228 PF04012 PspA_IM30: PspA/IM30 63.1 63 0.0014 28.0 8.8 62 69-130 79-140 (221)
229 PF01920 Prefoldin_2: Prefoldi 63.0 9.6 0.00021 28.8 3.3 65 51-116 30-97 (106)
230 KOG3433 Protein involved in me 62.9 21 0.00045 32.2 5.8 12 76-87 100-111 (203)
231 KOG2264 Exostosin EXT1L [Signa 62.9 24 0.00051 37.0 6.9 61 75-135 80-140 (907)
232 PF14523 Syntaxin_2: Syntaxin- 62.7 26 0.00057 26.5 5.7 52 85-136 30-84 (102)
233 PF05103 DivIVA: DivIVA protei 62.7 12 0.00026 29.5 3.9 50 75-124 26-75 (131)
234 KOG3119 Basic region leucine z 62.6 21 0.00046 32.8 6.0 56 81-136 194-249 (269)
235 COG1792 MreC Cell shape-determ 62.5 16 0.00034 33.9 5.3 42 78-123 63-104 (284)
236 KOG0995 Centromere-associated 62.4 19 0.00041 37.1 6.1 32 103-134 333-364 (581)
237 PRK10803 tol-pal system protei 62.3 20 0.00044 32.6 5.8 46 83-128 56-101 (263)
238 KOG2751 Beclin-like protein [S 62.2 22 0.00048 35.5 6.4 16 47-62 114-129 (447)
239 PF12252 SidE: Dot/Icm substra 62.1 31 0.00067 38.4 7.8 93 39-135 1064-1172(1439)
240 PRK10869 recombination and rep 61.5 43 0.00092 33.8 8.4 90 48-147 297-390 (553)
241 TIGR01069 mutS2 MutS2 family p 61.4 23 0.00051 37.2 6.8 14 120-133 576-589 (771)
242 KOG4348 Adaptor protein CMS/SE 61.3 17 0.00037 36.9 5.5 52 82-133 570-625 (627)
243 PF03961 DUF342: Protein of un 60.8 32 0.0007 33.4 7.2 31 104-134 377-407 (451)
244 PF10883 DUF2681: Protein of u 60.7 20 0.00043 28.3 4.8 36 74-109 16-51 (87)
245 TIGR00219 mreC rod shape-deter 60.6 30 0.00066 31.9 6.7 43 89-134 67-109 (283)
246 PRK09343 prefoldin subunit bet 60.4 64 0.0014 26.2 7.9 39 102-140 78-116 (121)
247 TIGR02492 flgK_ends flagellar 60.3 39 0.00084 31.4 7.4 74 51-125 108-182 (322)
248 PF10211 Ax_dynein_light: Axon 60.3 35 0.00076 29.8 6.7 64 39-107 75-146 (189)
249 KOG4571 Activating transcripti 60.2 49 0.0011 31.5 8.0 51 78-135 238-288 (294)
250 KOG4360 Uncharacterized coiled 60.1 27 0.00058 35.9 6.7 64 69-132 210-284 (596)
251 PRK02224 chromosome segregatio 60.0 42 0.00091 34.8 8.3 22 76-97 532-553 (880)
252 KOG4005 Transcription factor X 60.0 23 0.00051 33.2 5.8 51 83-133 92-142 (292)
253 KOG1853 LIS1-interacting prote 59.9 26 0.00057 33.3 6.1 59 74-132 52-114 (333)
254 PRK00409 recombination and DNA 59.9 34 0.00073 36.1 7.6 47 83-129 522-568 (782)
255 PF10498 IFT57: Intra-flagella 59.9 26 0.00057 33.8 6.4 33 103-135 288-320 (359)
256 KOG0243 Kinesin-like protein [ 59.8 27 0.00059 38.3 7.0 68 68-135 398-467 (1041)
257 PF15070 GOLGA2L5: Putative go 59.6 23 0.0005 36.6 6.3 54 81-134 4-61 (617)
258 PF12999 PRKCSH-like: Glucosid 59.5 20 0.00044 31.6 5.1 44 86-129 130-173 (176)
259 PF06785 UPF0242: Uncharacteri 59.3 18 0.0004 35.3 5.2 50 75-124 121-170 (401)
260 TIGR03752 conj_TIGR03752 integ 59.3 23 0.00049 35.7 6.0 55 81-135 73-142 (472)
261 PF13863 DUF4200: Domain of un 58.9 39 0.00084 26.6 6.3 31 104-134 76-106 (126)
262 TIGR03185 DNA_S_dndD DNA sulfu 58.7 25 0.00055 35.7 6.3 30 113-142 266-295 (650)
263 TIGR01069 mutS2 MutS2 family p 58.3 33 0.00071 36.2 7.2 11 75-85 498-508 (771)
264 TIGR02168 SMC_prok_B chromosom 58.1 50 0.0011 34.4 8.4 50 80-129 439-488 (1179)
265 KOG2077 JNK/SAPK-associated pr 58.0 16 0.00035 38.1 4.8 47 84-130 325-371 (832)
266 KOG0804 Cytoplasmic Zn-finger 57.9 27 0.00059 35.2 6.2 32 105-136 417-448 (493)
267 TIGR02169 SMC_prok_A chromosom 57.7 33 0.00073 35.8 7.2 15 115-129 902-916 (1164)
268 KOG4343 bZIP transcription fac 57.2 12 0.00025 38.6 3.6 34 98-131 305-338 (655)
269 COG1579 Zn-ribbon protein, pos 57.2 90 0.002 28.8 9.1 15 116-130 142-156 (239)
270 PRK03918 chromosome segregatio 57.2 34 0.00074 35.2 7.1 27 107-133 671-697 (880)
271 PRK03947 prefoldin subunit alp 56.9 24 0.00051 28.7 4.8 43 76-121 92-134 (140)
272 COG1256 FlgK Flagellar hook-as 56.7 43 0.00093 34.1 7.6 78 49-134 110-188 (552)
273 PF08286 Spc24: Spc24 subunit 56.7 3.6 7.8E-05 33.1 0.0 43 92-134 3-45 (118)
274 PF11068 YlqD: YlqD protein; 56.2 72 0.0016 26.7 7.6 66 70-135 16-86 (131)
275 KOG0614 cGMP-dependent protein 56.2 42 0.00091 35.0 7.3 50 85-134 21-70 (732)
276 PF13094 CENP-Q: CENP-Q, a CEN 56.0 83 0.0018 26.2 8.0 67 71-137 17-83 (160)
277 TIGR02209 ftsL_broad cell divi 55.9 41 0.0009 24.7 5.6 32 98-129 27-58 (85)
278 KOG2010 Double stranded RNA bi 55.9 22 0.00047 34.7 5.0 59 36-94 60-125 (405)
279 COG4694 Uncharacterized protei 55.9 48 0.0011 34.7 7.7 63 69-132 420-482 (758)
280 PF06698 DUF1192: Protein of u 55.8 17 0.00036 26.9 3.3 25 112-136 24-48 (59)
281 KOG1029 Endocytic adaptor prot 55.8 30 0.00065 37.4 6.4 19 49-67 446-464 (1118)
282 PF03961 DUF342: Protein of un 55.8 36 0.00077 33.1 6.6 56 80-135 333-401 (451)
283 PF02050 FliJ: Flagellar FliJ 55.5 65 0.0014 23.8 6.7 47 76-122 47-93 (123)
284 PF04999 FtsL: Cell division p 55.4 12 0.00026 28.6 2.8 26 104-129 44-69 (97)
285 KOG3156 Uncharacterized membra 55.3 30 0.00065 31.7 5.6 38 110-147 117-158 (220)
286 PF09787 Golgin_A5: Golgin sub 55.2 45 0.00096 33.2 7.3 87 44-135 211-307 (511)
287 PF12938 M_domain: M domain of 54.8 24 0.00051 32.6 4.9 57 78-134 147-203 (235)
288 PF04380 BMFP: Membrane fusoge 54.8 37 0.00081 25.8 5.3 30 101-130 49-78 (79)
289 PRK07739 flgK flagellar hook-a 54.7 52 0.0011 32.7 7.6 76 51-127 120-196 (507)
290 COG1196 Smc Chromosome segrega 54.6 74 0.0016 34.8 9.3 14 115-128 897-910 (1163)
291 PHA02047 phage lambda Rz1-like 54.6 71 0.0015 26.1 7.0 59 80-145 26-84 (101)
292 PF03954 Lectin_N: Hepatic lec 54.5 23 0.00051 30.3 4.5 52 84-135 58-113 (138)
293 PF05701 WEMBL: Weak chloropla 54.0 40 0.00087 33.7 6.8 41 79-119 293-333 (522)
294 KOG0995 Centromere-associated 53.8 64 0.0014 33.4 8.2 17 117-133 340-356 (581)
295 TIGR03185 DNA_S_dndD DNA sulfu 53.7 32 0.00069 35.0 6.1 29 81-109 428-456 (650)
296 PF02388 FemAB: FemAB family; 53.7 39 0.00085 32.5 6.5 54 81-134 242-298 (406)
297 cd00632 Prefoldin_beta Prefold 53.4 26 0.00056 27.4 4.4 47 69-115 51-97 (105)
298 PF08700 Vps51: Vps51/Vps67; 53.3 57 0.0012 23.9 6.0 58 76-133 21-82 (87)
299 cd00632 Prefoldin_beta Prefold 53.3 28 0.0006 27.2 4.5 52 78-129 53-104 (105)
300 PF08961 DUF1875: Domain of un 53.2 4.5 9.7E-05 37.3 0.0 41 74-128 122-162 (243)
301 PF09726 Macoilin: Transmembra 53.1 40 0.00087 35.3 6.8 35 82-116 546-580 (697)
302 PF12711 Kinesin-relat_1: Kine 53.1 69 0.0015 25.3 6.6 14 84-97 27-40 (86)
303 PF12777 MT: Microtubule-bindi 53.1 38 0.00082 31.9 6.1 26 78-103 232-257 (344)
304 PF12709 Kinetocho_Slk19: Cent 53.0 25 0.00054 27.9 4.1 37 85-121 46-82 (87)
305 KOG4395 Transcription factor A 52.9 32 0.00069 32.4 5.5 50 36-86 173-225 (285)
306 PF10267 Tmemb_cc2: Predicted 52.5 1.2E+02 0.0025 30.0 9.5 36 94-129 282-318 (395)
307 KOG4447 Transcription factor T 52.5 37 0.0008 29.9 5.5 43 45-88 30-77 (173)
308 KOG4196 bZIP transcription fac 52.2 39 0.00084 28.9 5.4 30 105-134 77-106 (135)
309 PRK14153 heat shock protein Gr 52.1 29 0.00063 30.9 4.9 33 99-131 37-69 (194)
310 PF03233 Cauli_AT: Aphid trans 52.1 65 0.0014 28.3 6.9 80 48-134 81-160 (163)
311 COG5481 Uncharacterized conser 52.0 45 0.00097 25.2 5.1 20 113-132 42-61 (67)
312 PF01166 TSC22: TSC-22/dip/bun 51.6 9.7 0.00021 28.3 1.5 9 114-122 33-41 (59)
313 PF15397 DUF4618: Domain of un 51.5 30 0.00064 32.3 5.0 65 69-133 159-224 (258)
314 PF03131 bZIP_Maf: bZIP Maf tr 51.4 3.8 8.3E-05 31.6 -0.6 35 91-125 54-88 (92)
315 PF13805 Pil1: Eisosome compon 51.2 1.4E+02 0.0031 28.0 9.5 87 46-148 144-236 (271)
316 PF01763 Herpes_UL6: Herpesvir 51.1 26 0.00057 35.9 5.1 44 74-117 363-406 (557)
317 PF11544 Spc42p: Spindle pole 51.1 50 0.0011 25.7 5.4 52 79-130 3-54 (76)
318 KOG1029 Endocytic adaptor prot 51.1 70 0.0015 34.8 8.1 52 73-124 530-585 (1118)
319 PF04880 NUDE_C: NUDE protein, 51.0 26 0.00057 30.6 4.4 15 76-90 9-23 (166)
320 PRK07521 flgK flagellar hook-a 51.0 54 0.0012 32.3 7.1 76 51-127 103-179 (483)
321 PF14389 Lzipper-MIP1: Leucine 50.8 37 0.0008 26.3 4.8 29 106-134 51-79 (88)
322 PRK14160 heat shock protein Gr 50.7 32 0.00069 31.1 5.0 22 107-128 73-94 (211)
323 KOG2129 Uncharacterized conser 50.5 1.1E+02 0.0024 31.1 9.0 52 81-135 253-308 (552)
324 PF02996 Prefoldin: Prefoldin 50.3 34 0.00074 26.6 4.6 25 76-103 75-99 (120)
325 PRK14127 cell division protein 50.3 30 0.00064 28.3 4.3 34 76-109 32-65 (109)
326 KOG0964 Structural maintenance 50.3 35 0.00077 37.5 6.0 58 76-133 260-317 (1200)
327 PRK11415 hypothetical protein; 50.0 30 0.00066 26.0 4.1 60 78-137 7-67 (74)
328 PRK13694 hypothetical protein; 50.0 35 0.00077 26.9 4.5 38 74-111 5-42 (83)
329 PF09730 BicD: Microtubule-ass 49.9 42 0.00091 35.5 6.4 78 48-130 28-118 (717)
330 KOG4603 TBP-1 interacting prot 49.8 54 0.0012 29.5 6.1 50 86-135 91-142 (201)
331 PRK04654 sec-independent trans 49.6 82 0.0018 28.8 7.4 53 81-134 34-86 (214)
332 PRK05683 flgK flagellar hook-a 49.6 52 0.0011 34.3 6.9 59 69-127 126-184 (676)
333 PRK05431 seryl-tRNA synthetase 49.5 50 0.0011 32.2 6.5 57 80-136 27-93 (425)
334 PF11544 Spc42p: Spindle pole 49.3 48 0.001 25.8 5.1 50 85-134 2-51 (76)
335 PRK06665 flgK flagellar hook-a 49.2 65 0.0014 33.1 7.5 59 69-127 138-196 (627)
336 PRK07191 flgK flagellar hook-a 49.2 64 0.0014 31.6 7.2 73 52-125 109-182 (456)
337 PF03131 bZIP_Maf: bZIP Maf tr 49.2 2.9 6.4E-05 32.3 -1.6 10 80-89 26-35 (92)
338 cd07627 BAR_Vps5p The Bin/Amph 49.2 1.1E+02 0.0024 26.8 8.1 58 76-133 117-174 (216)
339 PRK15396 murein lipoprotein; P 49.1 46 0.001 25.7 5.0 47 89-135 26-72 (78)
340 KOG1924 RhoA GTPase effector D 49.1 56 0.0012 35.5 7.1 14 50-63 382-395 (1102)
341 PRK03992 proteasome-activating 49.1 31 0.00068 32.8 5.0 43 80-122 7-49 (389)
342 TIGR00019 prfA peptide chain r 49.0 1.1E+02 0.0024 29.7 8.7 26 111-136 77-102 (360)
343 PF08826 DMPK_coil: DMPK coile 48.8 46 0.001 24.6 4.8 17 116-132 39-55 (61)
344 PRK04778 septation ring format 48.7 1.1E+02 0.0025 30.7 9.0 60 75-134 377-436 (569)
345 PF09969 DUF2203: Uncharacteri 48.7 88 0.0019 25.7 6.9 17 77-93 6-22 (120)
346 PF10779 XhlA: Haemolysin XhlA 48.6 52 0.0011 24.2 5.1 44 84-134 2-45 (71)
347 TIGR01242 26Sp45 26S proteasom 48.3 18 0.00039 33.7 3.2 25 110-134 14-38 (364)
348 TIGR00634 recN DNA repair prot 48.3 29 0.00063 34.7 4.8 21 74-95 148-168 (563)
349 TIGR01242 26Sp45 26S proteasom 48.3 18 0.0004 33.6 3.3 33 86-118 4-36 (364)
350 PRK15396 murein lipoprotein; P 48.3 58 0.0013 25.2 5.4 48 82-129 26-73 (78)
351 PLN02678 seryl-tRNA synthetase 47.9 55 0.0012 32.6 6.6 55 83-137 42-99 (448)
352 COG5493 Uncharacterized conser 47.8 84 0.0018 28.9 7.2 54 81-134 46-106 (231)
353 PF04102 SlyX: SlyX; InterPro 47.6 41 0.0009 24.8 4.4 47 83-129 6-52 (69)
354 KOG0804 Cytoplasmic Zn-finger 47.6 47 0.001 33.6 6.0 39 86-124 373-411 (493)
355 PRK11546 zraP zinc resistance 47.4 83 0.0018 26.9 6.8 14 103-116 90-103 (143)
356 KOG0612 Rho-associated, coiled 47.2 89 0.0019 35.2 8.4 26 76-101 460-485 (1317)
357 PF05008 V-SNARE: Vesicle tran 46.7 1.1E+02 0.0024 22.2 7.5 31 104-134 41-72 (79)
358 PF10205 KLRAQ: Predicted coil 46.6 72 0.0016 26.0 6.0 49 87-135 25-73 (102)
359 COG3352 FlaC Putative archaeal 46.3 1.2E+02 0.0025 26.7 7.5 71 75-145 73-144 (157)
360 PF09766 FimP: Fms-interacting 46.2 42 0.00091 32.0 5.4 55 82-140 92-146 (355)
361 PRK05771 V-type ATP synthase s 46.1 74 0.0016 32.4 7.3 35 96-130 94-128 (646)
362 PF13600 DUF4140: N-terminal d 45.9 18 0.00039 27.8 2.4 18 109-126 84-101 (104)
363 PF07412 Geminin: Geminin; In 45.9 25 0.00053 31.7 3.5 32 95-126 125-156 (200)
364 PF04999 FtsL: Cell division p 45.9 53 0.0011 25.0 5.0 32 92-123 39-70 (97)
365 TIGR02338 gimC_beta prefoldin, 45.9 58 0.0013 25.7 5.3 65 56-135 40-107 (110)
366 COG2900 SlyX Uncharacterized p 45.3 1.1E+02 0.0024 23.6 6.5 52 84-135 4-55 (72)
367 TIGR02338 gimC_beta prefoldin, 45.2 38 0.00083 26.8 4.2 42 69-110 62-103 (110)
368 PRK08147 flgK flagellar hook-a 45.1 77 0.0017 31.6 7.2 58 69-126 127-184 (547)
369 PF03980 Nnf1: Nnf1 ; InterPr 45.0 34 0.00074 26.8 3.9 26 81-106 80-105 (109)
370 PRK02119 hypothetical protein; 44.8 78 0.0017 23.8 5.6 44 91-134 5-48 (73)
371 PF12329 TMF_DNA_bd: TATA elem 44.8 1.2E+02 0.0026 22.8 6.6 36 98-133 36-71 (74)
372 PF00435 Spectrin: Spectrin re 44.5 34 0.00074 24.3 3.5 87 47-134 1-91 (105)
373 KOG4360 Uncharacterized coiled 44.5 1.1E+02 0.0024 31.6 8.1 81 51-134 209-300 (596)
374 PF01166 TSC22: TSC-22/dip/bun 44.2 13 0.00028 27.7 1.2 26 101-126 13-38 (59)
375 PF10267 Tmemb_cc2: Predicted 44.0 85 0.0019 30.9 7.2 16 48-63 227-242 (395)
376 PF13600 DUF4140: N-terminal d 44.0 28 0.00061 26.7 3.2 33 101-133 69-101 (104)
377 PF06428 Sec2p: GDP/GTP exchan 43.9 32 0.0007 27.6 3.6 72 49-132 17-88 (100)
378 TIGR02132 phaR_Bmeg polyhydrox 43.9 1.1E+02 0.0023 27.6 7.1 61 76-136 74-134 (189)
379 PF12777 MT: Microtubule-bindi 43.7 77 0.0017 29.8 6.6 27 103-129 250-276 (344)
380 PF10481 CENP-F_N: Cenp-F N-te 43.6 62 0.0014 30.9 5.9 27 73-99 10-36 (307)
381 PF13815 Dzip-like_N: Iguana/D 43.6 1E+02 0.0022 24.7 6.5 96 37-135 13-113 (118)
382 PF02994 Transposase_22: L1 tr 43.3 38 0.00082 32.5 4.6 45 86-130 142-186 (370)
383 PF10234 Cluap1: Clusterin-ass 43.1 1E+02 0.0023 28.8 7.3 58 77-134 172-236 (267)
384 PF05816 TelA: Toxic anion res 43.0 1.1E+02 0.0024 28.7 7.6 76 51-130 50-130 (333)
385 PF10351 Apt1: Golgi-body loca 42.7 1.4E+02 0.003 29.0 8.4 32 76-107 92-123 (457)
386 PF05164 ZapA: Cell division p 42.6 1.3E+02 0.0029 21.9 7.1 35 49-86 27-61 (89)
387 PF00261 Tropomyosin: Tropomyo 42.6 1E+02 0.0022 27.4 6.9 54 83-136 178-231 (237)
388 PF07047 OPA3: Optic atrophy 3 42.5 83 0.0018 26.0 6.0 21 114-134 110-130 (134)
389 PF01025 GrpE: GrpE; InterPro 42.4 35 0.00075 28.2 3.7 18 85-102 22-39 (165)
390 PF00261 Tropomyosin: Tropomyo 42.4 1.1E+02 0.0024 27.2 7.2 15 119-133 200-214 (237)
391 PHA02557 22 prohead core prote 42.3 1.4E+02 0.003 28.3 7.9 65 69-133 136-200 (271)
392 PF06705 SF-assemblin: SF-asse 42.3 88 0.0019 27.9 6.5 7 43-49 51-57 (247)
393 PF05700 BCAS2: Breast carcino 42.2 1.3E+02 0.0028 26.7 7.5 33 103-135 176-208 (221)
394 PF14584 DUF4446: Protein of u 42.2 99 0.0022 26.4 6.5 55 81-135 23-79 (151)
395 PF06148 COG2: COG (conserved 42.2 42 0.00092 27.1 4.1 48 76-123 71-118 (133)
396 PF08702 Fib_alpha: Fibrinogen 42.1 47 0.001 28.1 4.5 49 84-132 85-134 (146)
397 PF04508 Pox_A_type_inc: Viral 41.5 25 0.00054 21.6 2.0 18 117-134 2-19 (23)
398 TIGR01554 major_cap_HK97 phage 41.3 69 0.0015 30.1 5.9 18 84-101 2-19 (378)
399 PRK14161 heat shock protein Gr 41.2 53 0.0012 28.7 4.8 41 71-111 9-49 (178)
400 PF02996 Prefoldin: Prefoldin 41.1 53 0.0012 25.5 4.4 43 86-128 75-117 (120)
401 PF08738 Gon7: Gon7 family; I 41.0 55 0.0012 26.6 4.5 37 81-117 54-91 (103)
402 KOG2629 Peroxisomal membrane a 40.9 1.8E+02 0.0038 27.9 8.5 58 75-135 130-187 (300)
403 KOG0982 Centrosomal protein Nu 40.7 80 0.0017 31.9 6.4 51 82-132 298-348 (502)
404 PRK07857 hypothetical protein; 40.6 77 0.0017 25.9 5.3 41 79-119 26-66 (106)
405 PF01496 V_ATPase_I: V-type AT 40.4 9.3 0.0002 39.5 0.0 50 82-131 68-117 (759)
406 PRK00578 prfB peptide chain re 40.4 1.6E+02 0.0035 28.7 8.4 18 112-129 95-112 (367)
407 KOG0241 Kinesin-like protein [ 40.3 79 0.0017 35.3 6.7 21 79-99 362-382 (1714)
408 PRK00591 prfA peptide chain re 40.3 1.9E+02 0.0041 28.2 8.8 84 50-135 9-101 (359)
409 TIGR00020 prfB peptide chain r 40.3 1.6E+02 0.0036 28.6 8.4 18 112-129 95-112 (364)
410 PF03993 DUF349: Domain of Unk 40.3 1.3E+02 0.0029 21.3 6.7 68 50-134 1-68 (77)
411 PF12711 Kinesin-relat_1: Kine 40.1 42 0.0009 26.5 3.6 19 115-133 50-68 (86)
412 PRK08471 flgK flagellar hook-a 40.1 1.1E+02 0.0023 31.6 7.4 74 52-126 114-188 (613)
413 TIGR02977 phageshock_pspA phag 39.9 1.6E+02 0.0034 25.9 7.7 52 83-134 101-152 (219)
414 PF13514 AAA_27: AAA domain 39.9 1E+02 0.0022 33.5 7.5 66 69-134 145-213 (1111)
415 PF04136 Sec34: Sec34-like fam 39.8 1.3E+02 0.0029 25.4 6.9 56 80-135 20-75 (157)
416 KOG0964 Structural maintenance 39.8 97 0.0021 34.4 7.3 24 198-223 577-600 (1200)
417 cd00584 Prefoldin_alpha Prefol 39.6 59 0.0013 25.9 4.5 43 76-121 85-127 (129)
418 PF04012 PspA_IM30: PspA/IM30 39.6 1.4E+02 0.0029 25.9 7.1 58 77-134 94-151 (221)
419 PF10883 DUF2681: Protein of u 39.5 1.4E+02 0.0031 23.5 6.5 36 76-111 11-46 (87)
420 PRK06945 flgK flagellar hook-a 39.5 98 0.0021 32.1 7.1 76 52-127 110-185 (651)
421 TIGR02680 conserved hypothetic 39.4 94 0.002 34.8 7.4 27 73-99 222-248 (1353)
422 TIGR00414 serS seryl-tRNA synt 39.2 1.8E+02 0.0038 28.4 8.5 58 80-137 29-97 (418)
423 COG4985 ABC-type phosphate tra 39.1 1.1E+02 0.0025 28.7 6.8 29 106-134 218-246 (289)
424 KOG4797 Transcriptional regula 39.0 25 0.00053 29.4 2.2 44 76-126 50-98 (123)
425 TIGR01000 bacteriocin_acc bact 38.9 1.3E+02 0.0028 29.1 7.6 21 113-133 288-308 (457)
426 PF04849 HAP1_N: HAP1 N-termin 38.8 79 0.0017 30.2 5.9 57 78-134 210-266 (306)
427 PF14645 Chibby: Chibby family 38.8 42 0.0009 27.5 3.6 29 86-114 76-104 (116)
428 PRK11020 hypothetical protein; 38.7 79 0.0017 26.5 5.1 58 50-115 8-66 (118)
429 KOG4571 Activating transcripti 38.6 54 0.0012 31.2 4.7 68 41-115 222-289 (294)
430 PF04871 Uso1_p115_C: Uso1 / p 38.4 1.4E+02 0.0029 25.0 6.6 7 130-136 101-107 (136)
431 PF06008 Laminin_I: Laminin Do 38.4 2E+02 0.0044 25.7 8.3 86 51-136 21-107 (264)
432 PF10174 Cast: RIM-binding pro 38.4 93 0.002 33.2 6.9 39 97-135 366-411 (775)
433 COG3750 Uncharacterized protei 38.3 59 0.0013 25.7 4.1 35 77-111 10-44 (85)
434 KOG4825 Component of synaptic 38.2 4.6E+02 0.0099 27.3 11.2 12 176-187 303-314 (666)
435 PRK04863 mukB cell division pr 38.1 94 0.002 35.5 7.2 14 49-62 309-322 (1486)
436 PRK01156 chromosome segregatio 38.0 1E+02 0.0023 32.2 7.1 16 114-129 223-238 (895)
437 PF14645 Chibby: Chibby family 37.8 56 0.0012 26.7 4.2 45 87-131 70-114 (116)
438 KOG4057 Uncharacterized conser 37.8 1.6E+02 0.0035 26.0 7.1 63 74-137 5-68 (180)
439 PF06120 Phage_HK97_TLTM: Tail 37.7 94 0.002 29.6 6.2 9 121-129 93-101 (301)
440 PF07407 Seadorna_VP6: Seadorn 37.7 34 0.00075 33.5 3.3 32 79-110 30-61 (420)
441 KOG0288 WD40 repeat protein Ti 37.5 1.1E+02 0.0024 30.8 6.8 33 71-103 37-70 (459)
442 PRK03947 prefoldin subunit alp 37.5 61 0.0013 26.3 4.4 56 76-131 82-137 (140)
443 PF15254 CCDC14: Coiled-coil d 37.4 1.3E+02 0.0029 32.4 7.7 17 46-62 400-416 (861)
444 PLN03229 acetyl-coenzyme A car 37.4 60 0.0013 34.6 5.2 54 85-138 646-710 (762)
445 PRK06800 fliH flagellar assemb 37.4 82 0.0018 28.7 5.4 45 91-135 41-85 (228)
446 PF14988 DUF4515: Domain of un 37.4 92 0.002 27.7 5.8 48 81-128 156-203 (206)
447 PF04912 Dynamitin: Dynamitin 37.4 53 0.0011 31.3 4.6 52 79-134 92-143 (388)
448 PRK14148 heat shock protein Gr 37.2 61 0.0013 28.9 4.6 34 97-130 42-75 (195)
449 PRK04406 hypothetical protein; 37.2 91 0.002 23.7 4.9 46 90-135 6-51 (75)
450 TIGR02977 phageshock_pspA phag 37.1 2.9E+02 0.0063 24.3 8.9 62 73-134 84-145 (219)
451 PF04645 DUF603: Protein of un 37.1 75 0.0016 28.4 5.1 15 83-97 114-128 (181)
452 PRK02793 phi X174 lysis protei 37.0 1.2E+02 0.0025 22.8 5.5 46 82-127 9-54 (72)
453 KOG0971 Microtubule-associated 37.0 98 0.0021 34.2 6.7 17 47-63 417-433 (1243)
454 PF05667 DUF812: Protein of un 36.8 94 0.002 32.1 6.5 49 78-126 332-380 (594)
455 KOG0243 Kinesin-like protein [ 36.7 1.1E+02 0.0024 33.8 7.2 84 42-127 411-494 (1041)
456 PRK00295 hypothetical protein; 36.6 1.1E+02 0.0025 22.6 5.3 47 83-129 7-53 (68)
457 PF13870 DUF4201: Domain of un 36.6 1.5E+02 0.0032 25.1 6.7 27 68-94 40-66 (177)
458 KOG0837 Transcriptional activa 36.6 38 0.00082 32.0 3.3 61 72-133 197-258 (279)
459 PF15188 CCDC-167: Coiled-coil 36.5 54 0.0012 25.9 3.7 25 110-134 37-61 (85)
460 KOG4674 Uncharacterized conser 36.4 82 0.0018 36.7 6.4 55 80-134 1242-1296(1822)
461 PF10168 Nup88: Nuclear pore c 36.3 76 0.0017 33.4 5.8 51 80-130 542-593 (717)
462 KOG4343 bZIP transcription fac 36.3 1.1E+02 0.0023 31.9 6.7 43 81-123 302-344 (655)
463 PF06160 EzrA: Septation ring 36.3 2.2E+02 0.0048 28.7 8.9 63 72-134 370-432 (560)
464 PF10359 Fmp27_WPPW: RNA pol I 36.2 1.1E+02 0.0024 30.2 6.7 55 81-135 170-226 (475)
465 PF15294 Leu_zip: Leucine zipp 36.1 97 0.0021 29.3 6.0 26 81-106 132-157 (278)
466 PF11382 DUF3186: Protein of u 36.0 43 0.00093 31.3 3.6 30 105-134 42-71 (308)
467 PF06657 Cep57_MT_bd: Centroso 36.0 1.7E+02 0.0037 22.3 6.3 55 77-133 13-67 (79)
468 PF04065 Not3: Not1 N-terminal 36.0 88 0.0019 28.6 5.5 53 83-135 131-189 (233)
469 COG4372 Uncharacterized protei 35.9 1.2E+02 0.0025 30.6 6.6 53 80-132 73-125 (499)
470 PF01920 Prefoldin_2: Prefoldi 35.8 64 0.0014 24.3 4.0 61 74-134 22-101 (106)
471 TIGR02680 conserved hypothetic 35.7 1.1E+02 0.0023 34.4 7.1 10 54-63 180-189 (1353)
472 smart00502 BBC B-Box C-termina 35.5 1.9E+02 0.0041 21.7 8.8 11 121-131 77-87 (127)
473 PF08286 Spc24: Spc24 subunit 35.4 12 0.00027 30.0 0.0 12 178-189 95-106 (118)
474 TIGR03017 EpsF chain length de 35.4 2.1E+02 0.0046 27.1 8.2 22 47-68 261-282 (444)
475 COG5509 Uncharacterized small 35.3 43 0.00094 25.2 2.8 22 113-134 29-50 (65)
476 PF10482 CtIP_N: Tumour-suppre 35.2 81 0.0017 26.5 4.7 52 85-136 18-69 (120)
477 TIGR03007 pepcterm_ChnLen poly 35.2 1.7E+02 0.0037 28.3 7.7 15 118-132 357-371 (498)
478 PF10458 Val_tRNA-synt_C: Valy 35.2 1.3E+02 0.0029 21.7 5.4 52 83-134 6-64 (66)
479 COG3879 Uncharacterized protei 35.2 78 0.0017 29.5 5.1 31 85-115 54-84 (247)
480 PF07795 DUF1635: Protein of u 35.2 1E+02 0.0022 28.1 5.7 59 74-132 9-70 (214)
481 PF07407 Seadorna_VP6: Seadorn 35.1 36 0.00079 33.3 3.0 20 93-112 37-56 (420)
482 KOG4643 Uncharacterized coiled 35.1 1.1E+02 0.0024 34.0 6.8 60 74-133 495-554 (1195)
483 PRK10698 phage shock protein P 35.1 1.5E+02 0.0033 26.5 6.8 56 80-135 98-153 (222)
484 PF13591 MerR_2: MerR HTH fami 34.7 47 0.001 25.1 3.1 24 78-101 60-83 (84)
485 PF15035 Rootletin: Ciliary ro 34.7 1.7E+02 0.0037 25.6 6.9 34 86-119 86-119 (182)
486 PTZ00464 SNF-7-like protein; P 34.7 1.4E+02 0.003 26.8 6.5 17 84-100 21-37 (211)
487 PRK12714 flgK flagellar hook-a 34.6 1.2E+02 0.0027 31.1 6.9 77 52-128 109-185 (624)
488 KOG0972 Huntingtin interacting 34.6 1.1E+02 0.0023 29.9 6.0 52 76-127 275-326 (384)
489 PRK10328 DNA binding protein, 34.6 1.4E+02 0.0031 25.1 6.2 62 75-137 4-66 (134)
490 KOG0976 Rho/Rac1-interacting s 34.4 1.8E+02 0.0039 32.1 8.1 85 46-134 54-138 (1265)
491 PF08912 Rho_Binding: Rho Bind 34.4 84 0.0018 24.0 4.3 49 86-134 1-49 (69)
492 PRK06799 flgK flagellar hook-a 34.4 1.6E+02 0.0035 28.8 7.4 78 50-127 112-189 (431)
493 KOG0249 LAR-interacting protei 34.3 1.2E+02 0.0026 32.7 6.8 83 50-134 173-255 (916)
494 PRK11546 zraP zinc resistance 34.3 1E+02 0.0022 26.4 5.4 54 81-134 54-107 (143)
495 KOG0976 Rho/Rac1-interacting s 34.2 73 0.0016 34.8 5.3 64 69-132 332-395 (1265)
496 KOG0249 LAR-interacting protei 34.2 1.2E+02 0.0027 32.6 6.9 69 76-144 204-272 (916)
497 PF15458 NTR2: Nineteen comple 34.2 77 0.0017 29.0 4.9 48 86-133 206-253 (254)
498 KOG4643 Uncharacterized coiled 34.2 1.2E+02 0.0027 33.6 7.0 64 72-135 392-455 (1195)
499 PF10226 DUF2216: Uncharacteri 34.1 1.2E+02 0.0026 27.4 5.9 64 70-135 37-100 (195)
500 TIGR01834 PHA_synth_III_E poly 34.1 67 0.0015 30.9 4.6 50 46-103 269-318 (320)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.30 E-value=2.9e-12 Score=89.33 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=49.8
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCC--CCCCchhhhHHHHHHHHHHHHHHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVN--QPNNGKACVLNEAARLLKDLFSQIE 91 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~--~~K~DKasIL~DAI~ylk~Lr~~v~ 91 (241)
.++..|+.+||.||+++|+.|.+|+.+|.+. ..|.||++||..||+||+.|+.+++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3567899999999999999999999999444 2899999999999999999998763
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.26 E-value=9.5e-12 Score=85.47 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=44.9
Q ss_pred hhHHHhhHHHhhHhHHHhhhccCC--CCCCCchhhhHHHHHHHHHHHHHHHH
Q 026212 42 AEREKLKREHLNDLFLDLANAVEV--NQPNNGKACVLNEAARLLKDLFSQIE 91 (241)
Q Consensus 42 a~rER~RRdkLNerF~~L~slL~P--~~~K~DKasIL~DAI~ylk~Lr~~v~ 91 (241)
+.+||+||+++|+.|..|+++|++ +..+.||++||..||.||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999833 35799999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.26 E-value=6.1e-12 Score=87.84 Aligned_cols=51 Identities=29% Similarity=0.451 Sum_probs=46.2
Q ss_pred CccchhhHHHhhHHHhhHhHHHhhhccCCC----CCCCchhhhHHHHHHHHHHHH
Q 026212 37 KRVHKAEREKLKREHLNDLFLDLANAVEVN----QPNNGKACVLNEAARLLKDLF 87 (241)
Q Consensus 37 rk~~Ka~rER~RRdkLNerF~~L~slL~P~----~~K~DKasIL~DAI~ylk~Lr 87 (241)
||..|+.+||+||+.||+.|.+|+.+|.+. ..|.||++||..||+||++|+
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 456899999999999999999999999555 279999999999999999986
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.03 E-value=3.6e-10 Score=108.49 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=50.9
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFSQIESLN 94 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~~v~~Lk 94 (241)
.||..|++.|||||++||+|+.+|+.||..+. .+..|.+||..+++||.+|+...++..
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~ 293 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAR 293 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999984442 367799999999999999998877443
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.42 E-value=4.1e-07 Score=80.57 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=66.1
Q ss_pred CCCCCccchhhHHHhhHHHhhHhHHHhhhccCCCC-------CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhh
Q 026212 33 SRVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQ-------PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESH 105 (241)
Q Consensus 33 gk~~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~-------~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~ 105 (241)
-|.+||..|...|++|||-+|.-+..|..++ |.- .|+.||.||-.+|+||..|..++.+-+++...|+.+..
T Consensus 58 yk~rrr~aHtqaEqkRRdAIk~GYddLq~Lv-P~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vt 136 (229)
T KOG1319|consen 58 YKDRRRRAHTQAEQKRRDAIKRGYDDLQTLV-PTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVT 136 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999987 732 28889999999999999999998888877776666666
Q ss_pred HHHHhhhh
Q 026212 106 YVTIEKNE 113 (241)
Q Consensus 106 ~L~~EKne 113 (241)
.|+.-|++
T Consensus 137 AL~iIk~~ 144 (229)
T KOG1319|consen 137 ALKIIKVN 144 (229)
T ss_pred HHHHHHHH
Confidence 66555544
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.97 E-value=3.7e-05 Score=69.51 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=62.0
Q ss_pred CCCCccchhhHHHhhHHHhhHhHHHhhhccCCCC-CCCc--hhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHh
Q 026212 34 RVPKRVHKAEREKLKREHLNDLFLDLANAVEVNQ-PNNG--KACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIE 110 (241)
Q Consensus 34 k~~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~-~K~D--KasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~E 110 (241)
...++.+|+.-||.||++|-+.|..|+..| |.. ...+ -++||..|++||+.|+....... ..
T Consensus 56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~v-P~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~--------------~~ 120 (232)
T KOG2483|consen 56 AASSRAHHNALEKRRRAHLKDCFESLKDSV-PLLNGETRSTTLSILDKALEHIQSLERKSATQQ--------------QD 120 (232)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHhC-CCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH--------------HH
Confidence 345688999999999999999999999988 644 4444 48999999999999988766554 34
Q ss_pred hhhhhhhhhhhHHHHHHHH
Q 026212 111 KNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 111 KneLRdEk~~Lk~e~e~Le 129 (241)
+.+|+.|+..|+.++++|+
T Consensus 121 ~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 121 IEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4455666666666666665
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.92 E-value=9.5e-06 Score=83.86 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=46.8
Q ss_pred ccchhhHHHhhHHHhhHhHHHhhhccCCCC----CCCchhhhHHHHHHHHHHHHHH
Q 026212 38 RVHKAEREKLKREHLNDLFLDLANAVEVNQ----PNNGKACVLNEAARLLKDLFSQ 89 (241)
Q Consensus 38 k~~Ka~rER~RRdkLNerF~~L~slL~P~~----~K~DKasIL~DAI~ylk~Lr~~ 89 (241)
+..|+..||+|||++|--+.||++|| |.. -|+||-+||-.||..|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mv-p~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMV-PTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhh-hcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 66799999999999999999999998 754 4999999999999999999985
No 8
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.76 E-value=1.9e-05 Score=71.83 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=50.4
Q ss_pred CCCCccchhhHHHhhHHHhhHhHHHhhhccCCC--------CCCCchhhhHHHHHHHHHHHHHHHHH
Q 026212 34 RVPKRVHKAEREKLKREHLNDLFLDLANAVEVN--------QPNNGKACVLNEAARLLKDLFSQIES 92 (241)
Q Consensus 34 k~~rk~~Ka~rER~RRdkLNerF~~L~slL~P~--------~~K~DKasIL~DAI~ylk~Lr~~v~~ 92 (241)
+..||+.|-.-||+||+++|+-+.+|+.+| +. .+|.+||=||.=|++||++|+.....
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li-~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLI-PEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHH-HHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 345788999999999999999999999988 62 26899999999999999999976543
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.33 E-value=0.00021 Score=74.87 Aligned_cols=66 Identities=32% Similarity=0.349 Sum_probs=60.5
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLL 101 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ 101 (241)
.||..|+.-||+=|--+||++.+|+.++.+...|..|.++|..||+|+.+|....+.|+.++..++
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 578899999999999999999999999844448999999999999999999999999999888776
No 10
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.28 E-value=0.0002 Score=67.60 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=52.1
Q ss_pred ccchhhHHHhhHHHhhHhHHHhhhccCCCC--CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 026212 38 RVHKAEREKLKREHLNDLFLDLANAVEVNQ--PNNGKACVLNEAARLLKDLFSQIESLNKENASL 100 (241)
Q Consensus 38 k~~Ka~rER~RRdkLNerF~~L~slL~P~~--~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L 100 (241)
+---+|-||+|=.-+|--|..|+++| |-. -|..||+||..+.+||.+|+.+--+|-.+|..|
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~Ll-Pr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~el 124 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALL-PRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGEL 124 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhc-CcccchhhHHHHHHHHHHHHHHHHHhcccccccccchH
Confidence 34456789999999999999999998 855 699999999999999999998777666666544
No 11
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=97.04 E-value=0.003 Score=48.98 Aligned_cols=62 Identities=29% Similarity=0.330 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
+.-||+-|.=|+-+|++||+.|..|.++...+...+.+|+.||..||.|-..++..|.+.+.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777779999999999999999999999999999999999999999999999988653
No 12
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=96.88 E-value=0.0022 Score=59.21 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=47.5
Q ss_pred CccchhhHHHhhHHHhhHhHHHhhhccCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026212 37 KRVHKAEREKLKREHLNDLFLDLANAVEVNQ-PNNGKACVLNEAARLLKDLFSQIESLN 94 (241)
Q Consensus 37 rk~~Ka~rER~RRdkLNerF~~L~slL~P~~-~K~DKasIL~DAI~ylk~Lr~~v~~Lk 94 (241)
|+..-..|||||=.|.||-|..|.----++- +..-|+-||--||+||..|++=++++.
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~ 176 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQD 176 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555668999999999999999976544554 688999999999999999887766654
No 13
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.77 E-value=0.0079 Score=46.18 Aligned_cols=61 Identities=28% Similarity=0.344 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+..||+.|.=|+-+|++||+.|..|+.+...+..-+..|+.||..||.|-..++..+++-+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999999999999999999999999999999999998754
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.44 E-value=0.015 Score=43.96 Aligned_cols=52 Identities=33% Similarity=0.384 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
.||+.|.-|+.++++|+.+|..|. .+..+|++||..|+.+-..++..+.+.+
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333 4455666666777766666666666544
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.33 E-value=0.016 Score=43.88 Aligned_cols=55 Identities=35% Similarity=0.358 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++.+.+|..+|+.+=+.+..|+.++.+|+.+.++|.+++..|+.+..+|.++-.+
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999887654
No 16
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.17 E-value=0.007 Score=53.51 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=48.4
Q ss_pred CccchhhHHHhhHHHhhHhHHHhhhccCCCC----CCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026212 37 KRVHKAEREKLKREHLNDLFLDLANAVEVNQ----PNNGKACVLNEAARLLKDLFSQIESLN 94 (241)
Q Consensus 37 rk~~Ka~rER~RRdkLNerF~~L~slL~P~~----~K~DKasIL~DAI~ylk~Lr~~v~~Lk 94 (241)
++...+.|||.|=.-+|..|.+|+..| |.. .|..|+.+|--||.||.-|..=++.-+
T Consensus 109 ~~~~~n~RER~Rv~~vN~~f~~Lr~~l-P~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 109 QRQARNARERQRVQSVNSAFAELRALL-PTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred hhhhhhhhhhhcccchhhhhHHHHhcC-CCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 467788999999999999999999998 643 489999999999999999886654443
No 17
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.71 E-value=0.037 Score=48.02 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 76 LNEAARLLKDLFSQ---IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 76 L~DAI~ylk~Lr~~---v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
|.|.|.+|..|... .+.|+.+|..|+.++..|..+..+|..|+..|+.++..++..+++.+.
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999974 778889999999999999888888999999999999999999988653
No 18
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.67 E-value=0.079 Score=49.05 Aligned_cols=91 Identities=23% Similarity=0.268 Sum_probs=71.8
Q ss_pred CccchhhHHHhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhh
Q 026212 37 KRVHKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKE 116 (241)
Q Consensus 37 rk~~Ka~rER~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRd 116 (241)
|=.|-.--||.-|.||..|..+=-+ ...|-.-..+-=..|++|.++-+.|..+|+.|++..+.|..+-+||+.
T Consensus 60 RL~HLS~EEK~~RrKLKNRVAAQta-------RDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~ 132 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKLKNRVAAQTA-------RDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDS 132 (292)
T ss_pred hhcccCHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4456677899999999888765433 233334445555568999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELRA 134 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk~ 134 (241)
+..-|..+.-++.+|.+.
T Consensus 133 ~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 133 ELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 999999999888877654
No 19
>PLN03217 transcription factor ATBS1; Provisional
Probab=94.71 E-value=0.082 Score=41.98 Aligned_cols=57 Identities=19% Similarity=0.449 Sum_probs=45.6
Q ss_pred HhhHHHhhHhHHHhhhccCCCC------CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 026212 46 KLKREHLNDLFLDLANAVEVNQ------PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSE 103 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~------~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ee 103 (241)
|-=-|.+||....|.++| |.. .+..-+-+|.+|+.||+.|..+|+.|-+....|.+.
T Consensus 16 risddqi~dLvsKLq~ll-Pe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 16 RISEDQINDLIIKLQQLL-PELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred CCCHHHHHHHHHHHHHHC-hHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344588999999999999 742 244445599999999999999999999877776643
No 20
>smart00338 BRLZ basic region leucin zipper.
Probab=94.11 E-value=0.079 Score=38.20 Aligned_cols=39 Identities=28% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhh
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEEN 118 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk 118 (241)
-.|+.+|+.+++.|+.+|..|..++..|..|...|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347888888888888877777777776666666666544
No 21
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=94.11 E-value=0.031 Score=56.03 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=37.6
Q ss_pred HHHhhHHHhhHhHHHhhhccCC---CCCCCchhhhHHHHHHHHHHHHHHHHH
Q 026212 44 REKLKREHLNDLFLDLANAVEV---NQPNNGKACVLNEAARLLKDLFSQIES 92 (241)
Q Consensus 44 rER~RRdkLNerF~~L~slL~P---~~~K~DKasIL~DAI~ylk~Lr~~v~~ 92 (241)
|||.|=.-|||-|.||+-|.-- .....-|-.||--|+.+|-.|+.||.+
T Consensus 533 RERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 533 RERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 3344435689999999998522 224677899999999999999999865
No 22
>PRK11637 AmiB activator; Provisional
Probab=94.10 E-value=0.26 Score=47.13 Aligned_cols=68 Identities=15% Similarity=0.047 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKP 141 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p 141 (241)
+-+.++..-|..|..+++.+......++.++..+..+.+++..+...++.+++.++.+|..+++.++=
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777888888888888888888888899999998999998876643
No 23
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.88 E-value=0.15 Score=41.17 Aligned_cols=52 Identities=31% Similarity=0.429 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
++|-.++..|+.....|.+++..|+....+|-+||+.|+.|-+.|...|...
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777788888888888888888888888888888888764
No 24
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=93.76 E-value=0.11 Score=37.45 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhh
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNEL 114 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneL 114 (241)
.|+.+|+.++..|+.+|..|..++..|+.+...|
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555444444443333333
No 25
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.67 E-value=0.15 Score=43.02 Aligned_cols=54 Identities=35% Similarity=0.429 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhh--hhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEK--NELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EK--neLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+.+|++++..|+.++..|..+...|.... .+|+++...|+.|++.|+..|...-
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999988888776 5689999999999999999998753
No 26
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=93.44 E-value=0.42 Score=49.25 Aligned_cols=69 Identities=22% Similarity=0.195 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDLNIPPEFQ 150 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~~~~~p~f~ 150 (241)
-|.+|+.+-++|..+++.+..++.+|+.+.-.-+-|..+||.+||.-|.+++.-++.+.|.+..|-++.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sll 162 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLL 162 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccC
Confidence 355666666677777777777777777777777778999999999999999999888989888876543
No 27
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=93.26 E-value=0.076 Score=46.14 Aligned_cols=46 Identities=37% Similarity=0.434 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
|.+++.+.+.-=+.|.-|++|+ .||..|+.+.++||.|+..|.+++
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666677777776 677778888888888887777777
No 28
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.92 E-value=0.39 Score=44.61 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=41.7
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..+-+.|.++-.-+++++.+|+.|......++.++.+++.+.+++..|...|+.+|..|+..+..
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777766666666666666666666666555555554443
No 29
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.73 E-value=0.37 Score=42.90 Aligned_cols=80 Identities=9% Similarity=0.070 Sum_probs=41.2
Q ss_pred HhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 46 KLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
|.|=.+|...+.+|.+-| +.|-.+.-....+|+.+++.++.....|.++...|+.+..+++.|+..|+++.
T Consensus 92 ~~rlp~le~el~~l~~~l---------~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKL---------NNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444467888888887765 11223333444455555555444444444444444444444555555555555
Q ss_pred HHHHHHHHH
Q 026212 126 EVLQSELRA 134 (241)
Q Consensus 126 e~Le~qlk~ 134 (241)
+.++.....
T Consensus 163 ~~~~~~~~~ 171 (206)
T PRK10884 163 DDKQRTIIM 171 (206)
T ss_pred HHHHHHHHH
Confidence 555544433
No 30
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.67 E-value=0.4 Score=39.54 Aligned_cols=51 Identities=35% Similarity=0.385 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
-.+..|..|.+++..++.+...++.++..|..+++++++|..+|-.+.+.+
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777777777777777777666555555444
No 31
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.53 E-value=0.45 Score=37.07 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
.+++.+|.++|+..=+.+.-|+-|+.+|+.+.+.|.+|+..+++..+.|+++
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~e 54 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4678899999999988888888888888888888888877755544444443
No 32
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.37 E-value=0.37 Score=48.00 Aligned_cols=57 Identities=28% Similarity=0.334 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHH---------------hhhhhhhhhhhhHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTI---------------EKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~---------------EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
|.+-|--+++||.+++.|..+|+.|.+|...|+. +..++.+|...|+.++.+++.++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566789999999998888888776666643 44455555555555555544443
No 33
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.03 E-value=0.5 Score=43.70 Aligned_cols=60 Identities=25% Similarity=0.274 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
.|--+..-+|+++.+++..++..|..+..+|..|.++++++..+|..|..+|+..++.+.
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 355555566777777777888888888889999999999998888888888888877653
No 34
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=91.69 E-value=0.23 Score=51.63 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=35.1
Q ss_pred HHHhhHHHhhHhHHHhhhccCCC----CCCCchhhhHHHHHHHHH
Q 026212 44 REKLKREHLNDLFLDLANAVEVN----QPNNGKACVLNEAARLLK 84 (241)
Q Consensus 44 rER~RRdkLNerF~~L~slL~P~----~~K~DKasIL~DAI~ylk 84 (241)
.-|-||.|=|+-|++|+.+| |- .+-.|||||+--||.||+
T Consensus 53 AARsRRsKEn~~FyeLa~~l-Plp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLL-PLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhcccchHHHHHHHHhC-CCcchhhhhhhhHHHHHHHHHHHH
Confidence 34789999999999999998 73 268999999999999986
No 35
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=91.65 E-value=0.47 Score=38.75 Aligned_cols=51 Identities=27% Similarity=0.411 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++|-.++..|+.....+.+++..|+....+|-+||..|+.|-+.|...|..
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777888888888888888888887777777765
No 36
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=91.25 E-value=0.2 Score=49.69 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=34.7
Q ss_pred HhhHHHhhHhHHHhhhccCCC----CCCCchhhhHHHHHHHHHH
Q 026212 46 KLKREHLNDLFLDLANAVEVN----QPNNGKACVLNEAARLLKD 85 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~----~~K~DKasIL~DAI~ylk~ 85 (241)
|.||++-|--|.+|+.+| |- .+..||+||+-=|+.|||-
T Consensus 10 ~tRRekEN~EF~eLAklL-PLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 10 RTRREKENYEFYELAKLL-PLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHhhcchHHHHHhhc-cchhhhhhccchhhhhhHHHHHHHH
Confidence 789999999999999998 63 2579999999999999874
No 37
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=90.71 E-value=0.87 Score=34.15 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
-|.+|-...++|+.+|..|.++...+..|...|.+.+..-.+.|+.+=..|+++
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456777788888888888888888888888888888888888888887777764
No 38
>COG5570 Uncharacterized small protein [Function unknown]
Probab=90.50 E-value=0.44 Score=34.80 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhccchhhhHHH-------HhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 88 SQIESLNKENASLLSESHYVT-------IEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 88 ~~v~~Lk~~n~~L~ees~~L~-------~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+.+.+|+.....|++++.+-+ ....+|+..|.+||.+||+|..|.
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344444444444444444332 356788999999999999997653
No 39
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.26 E-value=1.1 Score=33.61 Aligned_cols=53 Identities=26% Similarity=0.373 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhh-------hhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEK-------NELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EK-------neLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+..|+.+...+...+..-+.+.+.|..|+ ....+++..|+.|++.|.++++..
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666666666666665 345668888999999998888764
No 40
>PHA02562 46 endonuclease subunit; Provisional
Probab=90.09 E-value=1.3 Score=42.87 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=56.7
Q ss_pred hHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 48 KREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 48 RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
+++.+..++.+|...+ ..-+.+ |.+.++-.++|+.++++|+.....+.+++..|..+..++.+++..+..++..
T Consensus 331 ~~~~~~~~i~el~~~i-----~~~~~~-i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 331 EFNEQSKKLLELKNKI-----STNKQS-LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777776665 111222 7778888999999999999998888888888888888888888877777665
Q ss_pred HH
Q 026212 128 LQ 129 (241)
Q Consensus 128 Le 129 (241)
++
T Consensus 405 ~~ 406 (562)
T PHA02562 405 RG 406 (562)
T ss_pred HH
Confidence 43
No 41
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.90 E-value=1.1 Score=41.66 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.-+++|..+...+..+.+.|...+.++..+.+++++++..++.++.+|++++..
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555543
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.57 E-value=3 Score=37.20 Aligned_cols=29 Identities=34% Similarity=0.332 Sum_probs=14.7
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 105 HYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 105 ~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.......++|+.||..|+.+.+.+++++.
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555543
No 43
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.54 E-value=2.4 Score=39.50 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=43.1
Q ss_pred hhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 47 LKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 47 ~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
.|.+.|...+..|.++.. .....|+ .=|..+-.-|.++..+++.++.....|+.+...+..+..++..++..|..+|.
T Consensus 184 ~~~~~L~~e~~~Lk~~~~-e~~~~D~-~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 184 ERKAELEEELENLKQLVE-EIESCDQ-EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777542 1222222 23444444444444555544444445555555555555555555555555555
Q ss_pred HHHHHH
Q 026212 127 VLQSEL 132 (241)
Q Consensus 127 ~Le~ql 132 (241)
.++..+
T Consensus 262 e~~~~~ 267 (325)
T PF08317_consen 262 EAEKIR 267 (325)
T ss_pred HHHHHH
Confidence 555444
No 44
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.32 E-value=5.3 Score=32.91 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=46.5
Q ss_pred hHHHhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhH
Q 026212 43 EREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 43 ~rER~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
.++...|+.|++.+..|.+=+ ..--.-+..|+.+++.++.++..++.+.+.+..+...+..-...++
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~-------------~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDI-------------ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999998888743 3334445566677777766666655555555444444443333344
Q ss_pred HHHHHHHHHHHH
Q 026212 123 SQIEVLQSELRA 134 (241)
Q Consensus 123 ~e~e~Le~qlk~ 134 (241)
.|..++...++.
T Consensus 115 ee~~klk~~~~~ 126 (151)
T PF11559_consen 115 EELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 45
>PRK11637 AmiB activator; Provisional
Probab=88.89 E-value=1.5 Score=42.05 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+-..++++..+++.|..+...++.++..+..+.+++..+...|+.+|..++.++...
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555556666666666666666667777777777666664
No 46
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=88.84 E-value=6.1 Score=39.65 Aligned_cols=57 Identities=9% Similarity=0.136 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+...-|.+-+.++++|+.+.+.|+.+...++....++..+...|+.|+..|+.|+++
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666667777777776677777777777888888888888888888865
No 47
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=87.95 E-value=1.1 Score=34.85 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
.+|..++..|......|..++..++.|-..|+.||.-|..=|.+|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777777777776
No 48
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=87.86 E-value=2.2 Score=33.17 Aligned_cols=52 Identities=35% Similarity=0.429 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhccchhhhH----------HHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHY----------VTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~----------L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
++|..+++.|+.+...+..+++. |..+..+++++...|+.+...++.++...
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666555555544444 44455555555555555555555555554
No 49
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.72 E-value=2.1 Score=37.05 Aligned_cols=82 Identities=21% Similarity=0.292 Sum_probs=38.9
Q ss_pred hhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 47 LKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 47 ~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
+.++.+.++...+-.-| ..+-..+..--.-|.+|+.++..|+..+..|.+++++...-...|+||...|..+..
T Consensus 88 r~~~el~~~L~~~~~~l------~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 88 RSKGELAQQLVELNDEL------QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544 111123444455567777777777777777777777776666667777777777766
Q ss_pred HHHHHHHH
Q 026212 127 VLQSELRA 134 (241)
Q Consensus 127 ~Le~qlk~ 134 (241)
-++.++..
T Consensus 162 ~~e~k~~~ 169 (194)
T PF08614_consen 162 MLEEKLRK 169 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 50
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.10 E-value=2.8 Score=37.00 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.|..+=+.+|+.|.++|.+++..-........++..|-..|.+....+..+.+.|+.+++..
T Consensus 20 dIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 20 DITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 36677788999999999999987777666777777777777777777777777777777653
No 51
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=87.03 E-value=2 Score=35.07 Aligned_cols=51 Identities=27% Similarity=0.289 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
..-|.+|..++..|-.+...|...+.+|..|=..|+-||..|+..+..+++
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667777777777777778888888888888888888888888887744
No 52
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=86.93 E-value=4.6 Score=34.19 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.+.++..|..+++....+..++..+..++.....+..++|++...++.+..++..+....
T Consensus 72 ~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 72 IGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999998874
No 53
>PRK04406 hypothetical protein; Provisional
Probab=86.93 E-value=4 Score=31.03 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.|..++..|+....-.+.-+.+|....-+...+...|+.++..|.++++..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577888888888877777788887777777888888888888888888764
No 54
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.74 E-value=2.3 Score=32.89 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
.+++.+|.++|+.--+.+.-|+-++.+|+.+.|.|..|-+.+...++.|+.+
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 4567788888888777777777777777777777777776666666655543
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.37 E-value=2 Score=40.13 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 88 SQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 88 ~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.++..++.+++....++.+|..++.++.++...+..++..++.++..
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444555555555544443
No 56
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.31 E-value=2.6 Score=37.68 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=16.4
Q ss_pred hhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 102 SESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 102 ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+...|..+.-.|.+||..|..+++.|+.+.+.
T Consensus 95 kE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 95 KEQQSLVAEIETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 334444444455555555555555555554443
No 57
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=86.30 E-value=2.6 Score=32.06 Aligned_cols=52 Identities=33% Similarity=0.420 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhh--------hhhhhhhhhHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKN--------ELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKn--------eLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|++...++++|+.+|=.|.=+|..|....+ ++..+|..||.+++.|+.+++.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~ 61 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQE 61 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888776655555543333 2344555666666666666654
No 58
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.19 E-value=6 Score=32.59 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=38.7
Q ss_pred HHhhHhHHHhhhccCCCCCCCc--hhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 50 EHLNDLFLDLANAVEVNQPNNG--KACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 50 dkLNerF~~L~slL~P~~~K~D--KasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
.-||..+..+|-+=.+.....+ -..=....|..|.+|-.+.++-....+.|..+++.+..+...|.....+|+.+++.
T Consensus 5 ~yiN~~L~s~G~~~~~~~~~~~~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 5 EYINQQLLSRGYPSDGLLFDSAEESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEE 84 (151)
T ss_pred HHHHHHHHHCCCCCCCccCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3478888877764322111111 11223334445555555554444444445444444444444444444444444444
Q ss_pred HHHHH
Q 026212 128 LQSEL 132 (241)
Q Consensus 128 Le~ql 132 (241)
++.++
T Consensus 85 ~ere~ 89 (151)
T PF11559_consen 85 LEREL 89 (151)
T ss_pred HHHHH
Confidence 44443
No 59
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=86.18 E-value=2.2 Score=34.51 Aligned_cols=51 Identities=25% Similarity=0.257 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
...|.+|..++..|-.+...|...+.+|..|=.+|+-||..|+..+..+++
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345777888888888888888888888888888899999999988888877
No 60
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.99 E-value=1 Score=31.23 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=11.4
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 108 TIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 108 ~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+.+-..|..||..|++++..|...+
T Consensus 18 k~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 18 KAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3343444444455555555444433
No 61
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.92 E-value=3.3 Score=33.85 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHh----hhhhhhhhhhhHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIE----KNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~E----KneLRdEk~~Lk~e~e~Le~qlk 133 (241)
=+++|.-|..|+.+++.++.....|..+....+.+ +....+++..|+.++..++..+.
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~ 115 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIE 115 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888777776655443332 22233344455555554444443
No 62
>PRK02119 hypothetical protein; Provisional
Probab=85.91 E-value=3.1 Score=31.41 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+..+.+++.+|+....-.+.-+.+|....-+-..+...|+.++..|.++++..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45577788888877777777788888888888888888888888888888774
No 63
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.90 E-value=4.4 Score=41.25 Aligned_cols=37 Identities=32% Similarity=0.326 Sum_probs=31.5
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
|...++.+..||.+|++||+.|...|++|+..|....
T Consensus 422 lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 422 LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445667788999999999999999999999999864
No 64
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=85.79 E-value=0.68 Score=47.35 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=38.4
Q ss_pred cchhhHHHhhHHHhhHhHHHhhhccCCC----CCCCchhhhHHHHHHHHH
Q 026212 39 VHKAEREKLKREHLNDLFLDLANAVEVN----QPNNGKACVLNEAARLLK 84 (241)
Q Consensus 39 ~~Ka~rER~RRdkLNerF~~L~slL~P~----~~K~DKasIL~DAI~ylk 84 (241)
+.|.-=-||-||+||--+--|+++| |- ++|.||-|||-=++.||.
T Consensus 27 ~tkSNPSKRHRdRLNaELD~lAsLL-PfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 27 LTKSNPSKRHRDRLNAELDHLASLL-PFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cccCCcchhHHHHhhhHHHHHHHhc-CCCHHHHhhhhhhhhhhhhHHHHH
Confidence 4555556899999999999999998 84 389999999999999974
No 65
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=85.57 E-value=2.4 Score=30.96 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=14.7
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 109 IEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 109 ~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
...+-+|.|+..|+.+++++++-++..
T Consensus 14 ~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 14 SSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555666666555544
No 66
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.45 E-value=4.9 Score=37.90 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=47.1
Q ss_pred HhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 46 KLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
+.|.+.|+..+..|..+.+... .=....|..+-.-|+++..++...+.....++++...+....++..++++.+..+|
T Consensus 178 ~~~~~~L~~e~~~L~~~~~e~~--~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 178 RDRKDALEEELRQLKQLEDELE--DCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777643321 11245555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHH
Q 026212 126 EVLQSELR 133 (241)
Q Consensus 126 e~Le~qlk 133 (241)
..++..+.
T Consensus 256 ~~ae~~~~ 263 (312)
T smart00787 256 AEAEKKLE 263 (312)
T ss_pred HHHHHHHH
Confidence 55555443
No 67
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=85.41 E-value=2.1 Score=30.88 Aligned_cols=46 Identities=28% Similarity=0.352 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+.+++.++++|+. ++..++.+..+|+.+...|+.+-+.++..-+..
T Consensus 19 ~~~~~~ei~~l~~-------~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~ 64 (80)
T PF04977_consen 19 YYQLNQEIAELQK-------EIEELKKENEELKEEIERLKNDPDYIEKVAREK 64 (80)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555555544 444444444455555555544555555555544
No 68
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.36 E-value=3 Score=37.31 Aligned_cols=60 Identities=30% Similarity=0.332 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++--|...=|-|.++++.|+.....|+++.+.|......+..|++.|-++|+.|+.+-..
T Consensus 54 s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~k 113 (193)
T PF14662_consen 54 SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGK 113 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666667777776666677777777777777777777777777777766544
No 69
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.20 E-value=1.1 Score=31.07 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=13.9
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 105 HYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 105 ~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
..|+..-+.|+.++.+|+.|.++|..++.
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555544444
No 70
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=85.08 E-value=3 Score=29.93 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=22.5
Q ss_pred hhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 97 NASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 97 n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
...|+.++..|..+...|+.++..|+.++..|..++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555666666666666666666666666666654
No 71
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=84.83 E-value=3.1 Score=35.64 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=9.2
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 110 EKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 110 EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
|..+|++|....+.|++.|..|.+
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444433
No 72
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=84.70 E-value=2.4 Score=29.34 Aligned_cols=46 Identities=28% Similarity=0.264 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.|..+-..|+.....++.....-..+...|+-++..||.+|.++..
T Consensus 3 ~L~~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 3 RLFEEHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444433332212222334455566666666666554
No 73
>PRK00295 hypothetical protein; Provisional
Probab=84.68 E-value=5.8 Score=29.49 Aligned_cols=50 Identities=14% Similarity=0.021 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+.+++.+|+....-.+.-+.+|....-+...+...|+.++..|..+++.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777776666666777777777777777888888888888888875
No 74
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.45 E-value=3.2 Score=37.70 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccch--------------hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLS--------------ESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~e--------------es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
..-.+|.+++.+.+.|..+.....+ .++.+..|++..++...+|..|...|..++-...
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666655544333 4444455555555555555555555555555443
No 75
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.82 E-value=5.7 Score=37.64 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=53.0
Q ss_pred hhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 47 LKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 47 ~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
.+|+.||....++++- -.+...-++++++++++|......+.+++.+++.+++++....+.|-.++.
T Consensus 27 ekR~El~~~~~~~~ek-------------Rdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~ 93 (294)
T COG1340 27 EKRDELRKEASELAEK-------------RDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYR 93 (294)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677766666663 345566788888888888888888888888888888887777776666666
Q ss_pred HHHHHHH
Q 026212 127 VLQSELR 133 (241)
Q Consensus 127 ~Le~qlk 133 (241)
.|-....
T Consensus 94 ~l~e~~~ 100 (294)
T COG1340 94 ELKEKRN 100 (294)
T ss_pred HHHHHhh
Confidence 6655544
No 76
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=83.75 E-value=2.3 Score=37.09 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
|.+.+.....|+.+.+.|+.++..|++++..|..|..+|..+...++.+-+.|=+-+.
T Consensus 92 l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 92 LKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677888888888888888888888888888888888888888777766554
No 77
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=83.56 E-value=2.8 Score=34.68 Aligned_cols=49 Identities=31% Similarity=0.430 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
++|-.+|..|+.....|..++..|++-..+|-+||..|.-|-++|...|
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 4556677778887778888888888888899999999988888776544
No 78
>PRK04325 hypothetical protein; Provisional
Probab=83.53 E-value=5.8 Score=29.98 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
..+..++.+|+....-.+.-+.+|....-+-..+...|+.++..|..+++.+
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777778777777777777787777777888888888888888888775
No 79
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.42 E-value=5.9 Score=34.93 Aligned_cols=67 Identities=22% Similarity=0.275 Sum_probs=52.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhh----------------------hhhhhHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKE----------------------ENSSLESQIEV 127 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRd----------------------Ek~~Lk~e~e~ 127 (241)
.||. .|..+-..++.+..++..|+.+++.|.++...|..|+++|.+ ....|....|+
T Consensus 83 kdK~-~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 83 KDKQ-SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEK 161 (201)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 577888888999999999999999999999999999999986 22345555666
Q ss_pred HHHHHHHHHh
Q 026212 128 LQSELRARVV 137 (241)
Q Consensus 128 Le~qlk~r~~ 137 (241)
-+.||...++
T Consensus 162 keaqL~evl~ 171 (201)
T PF13851_consen 162 KEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 80
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=83.18 E-value=2.2 Score=38.42 Aligned_cols=25 Identities=40% Similarity=0.280 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccch
Q 026212 78 EAARLLKDLFSQIESLNKENASLLS 102 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~e 102 (241)
+.+..+.+|+++.++|+.++..|+.
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~ 90 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELES 90 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444554444444444433
No 81
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=83.15 E-value=2 Score=35.78 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=35.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 76 LNEAARLLKDL-FSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 76 L~DAI~ylk~L-r~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
|+|-+-+..++ +.+-++++.....-..-|-.|+.|+|-|+|||.+|+.|+
T Consensus 69 lCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 69 LCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 55655555555 334555665555444568899999999999999999875
No 82
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.12 E-value=3.3 Score=42.83 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEEN 118 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk 118 (241)
+..-.+-++.|++.+++|+.+|..|+.++.+++.|..+|+++.
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777777777777777766666666533
No 83
>PRK02793 phi X174 lysis protein; Provisional
Probab=83.10 E-value=6.3 Score=29.64 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.+..++.+|+....-.+.-+.+|.....+...+...|+.++..|..+++..
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366777777777777777778887888888888888888888888888874
No 84
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=83.08 E-value=2.8 Score=33.76 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
++-=+|+||-..++. |...+..++++++.+..+..+|+.+...++.++..|..++
T Consensus 63 LaQl~ieYLl~~q~~---L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 63 LAQLSIEYLLHCQEY---LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344567776554442 3334555555555565666666666666666666665554
No 85
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.76 E-value=5.2 Score=33.94 Aligned_cols=45 Identities=33% Similarity=0.329 Sum_probs=32.2
Q ss_pred HHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 91 ESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 91 ~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+.-+.++..|.+++..++.+.+.|.-|...|..|++.|.++++..
T Consensus 48 En~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 48 ENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556777777777888888888888888888887777654
No 86
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.67 E-value=3.5 Score=34.71 Aligned_cols=52 Identities=31% Similarity=0.388 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhh--hhhHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEEN--SSLESQIEVLQSELRA 134 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk--~~Lk~e~e~Le~qlk~ 134 (241)
+.+|..++.+|+.+...|..+.+.|..|.+.|...- ..|..+|..|+.++..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEE 127 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555432 3455555555555444
No 87
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=82.59 E-value=6 Score=29.86 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+-=..|.+|+.+-+.|....-.+...|+-|...-.++..+...|+..++.++.++..
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567888888888887777777777777777777777777777777776666554
No 88
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=82.37 E-value=1.7 Score=41.85 Aligned_cols=55 Identities=25% Similarity=0.416 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 73 ACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 73 asIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|++-+-+.--.+.|..+..+|+.++..|+.+.+.+ .++...++.|+.+++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 61 (398)
T PTZ00454 7 AAVASSTTHTERDLYEKLKELEKELEFLDIQEEYI-------KEEQKNLKRELIRAKEEVKR 61 (398)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666665555555554444 44444555555556666665
No 89
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=82.36 E-value=6 Score=29.70 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
|+.|..+|+.|=.....|..+-..|..+...++.|...|....+--.+.+.+++.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~ 56 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMIT 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888888888888888888888888888888763
No 90
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.19 E-value=7.5 Score=32.11 Aligned_cols=64 Identities=27% Similarity=0.317 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccch-------hhhHHHHhhhhhhh---hhhhhHHHHHHHHHHHHHHH
Q 026212 73 ACVLNEAARLLKDLFSQIESLNKENASLLS-------ESHYVTIEKNELKE---ENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 73 asIL~DAI~ylk~Lr~~v~~Lk~~n~~L~e-------es~~L~~EKneLRd---Ek~~Lk~e~e~Le~qlk~r~ 136 (241)
++++..=-.-|++|..++..|+.++..|.. |+-.|+.+..+++. +...|+.++..|+..+..-+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445566666666666666666554 44444444433322 33455566666666655543
No 91
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.15 E-value=4.8 Score=39.55 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=54.0
Q ss_pred HHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHH---------------HHHHHHhhhccchhhhHHHHhhhhh
Q 026212 50 EHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQ---------------IESLNKENASLLSESHYVTIEKNEL 114 (241)
Q Consensus 50 dkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~---------------v~~Lk~~n~~L~ees~~L~~EKneL 114 (241)
..|.+++.+|..-+ ..-.++...+..-+.+|..+... ++++........+++.++..++.++
T Consensus 74 ~~l~~~l~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 74 AELRKQIRELEAEL---RDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555443 22345666777777777777642 3445555555666777777777888
Q ss_pred hhhhhhhHHHHHHHHHHHHHH
Q 026212 115 KEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 115 RdEk~~Lk~e~e~Le~qlk~r 135 (241)
..+...|+.++.+|+.+|...
T Consensus 151 ~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888887664
No 92
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=82.08 E-value=4.2 Score=41.44 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=28.0
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
++.++..++..+..|.||+..||.|..+|..+|+..
T Consensus 153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 153 LEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 456677777788888888888888888888887764
No 93
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=82.04 E-value=2.1 Score=29.98 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=16.3
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
....|..+..+|..+|..|+.++..|+.
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555666666666666666654
No 94
>smart00338 BRLZ basic region leucin zipper.
Probab=81.55 E-value=2.3 Score=30.49 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=14.6
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+..|..+...|..+|..|..++..|+.++..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 95
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=81.53 E-value=8.2 Score=33.01 Aligned_cols=29 Identities=41% Similarity=0.588 Sum_probs=18.9
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 108 TIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 108 ~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+.+.+++|.+..+|+.|+++|+++|+.-+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~ei 100 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELREEI 100 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777666644
No 96
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.52 E-value=5.2 Score=35.25 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 026212 123 SQIEVLQSE 131 (241)
Q Consensus 123 ~e~e~Le~q 131 (241)
.++..++..
T Consensus 126 ~~~~~~~~~ 134 (302)
T PF10186_consen 126 NELEERKQR 134 (302)
T ss_pred HHHHHHHHH
Confidence 333334444
No 97
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=81.41 E-value=17 Score=30.86 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=66.7
Q ss_pred HhhHhHHHhhhccCCCCCCCchhhhHHHHHHH-HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 51 HLNDLFLDLANAVEVNQPNNGKACVLNEAARL-LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 51 kLNerF~~L~slL~P~~~K~DKasIL~DAI~y-lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
.|++.|..|-.+++-+. ...-.+.|+++- -.++...++..-.-...++.++..++.|...|.+.+.++++.+++|.
T Consensus 5 el~~~~~~l~~~~e~~~---~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk 81 (162)
T PF05565_consen 5 ELTDEYLELLELLEEGD---LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLK 81 (162)
T ss_pred HHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888874433 333456777777 34577777777777788999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 026212 130 SELRARVV 137 (241)
Q Consensus 130 ~qlk~r~~ 137 (241)
+-|..-|.
T Consensus 82 ~yL~~~m~ 89 (162)
T PF05565_consen 82 EYLLDAME 89 (162)
T ss_pred HHHHHHHH
Confidence 99988765
No 98
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=81.29 E-value=7.5 Score=32.84 Aligned_cols=50 Identities=32% Similarity=0.379 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
.++++.++++.++.....+.+++.++..+..+++++...+..+...++..
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQEN 173 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555544444445555555555555433
No 99
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=81.23 E-value=4.8 Score=29.56 Aligned_cols=58 Identities=24% Similarity=0.337 Sum_probs=41.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.+|-+.|.++=..|.+..+-+..++.+...+.. .+++.+.......+.+..+|+.+|+
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLPP------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777777777777777777777666655532 6777778888888888888888776
No 100
>PRK00846 hypothetical protein; Provisional
Probab=81.20 E-value=9.1 Score=29.56 Aligned_cols=51 Identities=10% Similarity=-0.000 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.+..++.+|+....-.+.-+.+|....-+......+|+.++..|..+|+..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777777777777888888888888888999998888888885
No 101
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=81.05 E-value=3.8 Score=30.34 Aligned_cols=50 Identities=22% Similarity=0.178 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
|..++.+|+....-++..+.+|....-+...+..+|+.++..|..+++..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777777777777777777778888888888777774
No 102
>PHA03011 hypothetical protein; Provisional
Probab=81.00 E-value=6.6 Score=32.37 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
=...-|+.|.+|+.|-.+|-.+...+..+++.+..-..+--||..-|.+||++|..++-.
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 356678889999999999999998899899998888888888999999999999888753
No 103
>PRK09039 hypothetical protein; Validated
Probab=80.81 E-value=6.6 Score=37.21 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
++.+++-.-|..|+.||+.|+.+...|+..+..++....+.+.....|+.+++..
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888888777777666666655555555554444
No 104
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.72 E-value=3.4 Score=42.26 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
....-.=+.+|+.++++|+.+.+.+..+++.++.+..++.+|....+.+.++|+.+++..
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788999999999999999999999999999999999999999999999998865
No 105
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=80.56 E-value=3.5 Score=37.75 Aligned_cols=53 Identities=25% Similarity=0.218 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+|-=+..|=+..+..|..|++|.+.+..++..|+.|...|++|=.+|=..++=
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666677777777777777777788888888877777776664
No 106
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=80.43 E-value=2.7 Score=42.15 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 73 ACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 73 asIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
.+-|.+.=.-.++|+.+++.|+.+.+.+......+..+.++|.+|+..|+.+++-+..+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34566777777888888888877777666666677777777888888888887554444
No 107
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.11 E-value=12 Score=28.93 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhh----------hhhhhhhhhHHHHHHHHHHHHHH
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKN----------ELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKn----------eLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.+.-|.+|-.+..+|..+.+.|+.+-+.+..+.. +|..+-..|+.++..++.++...
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555566666555555433 34445566667777777666653
No 108
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.03 E-value=7.9 Score=34.58 Aligned_cols=14 Identities=29% Similarity=0.019 Sum_probs=5.4
Q ss_pred HHHHHhhcCCCCCC
Q 026212 132 LRARVVQSKPDLNI 145 (241)
Q Consensus 132 lk~r~~~~~p~~~~ 145 (241)
|+.++....|++..
T Consensus 114 L~~~v~~d~Pf~~~ 127 (251)
T PF11932_consen 114 LEQFVELDLPFLLE 127 (251)
T ss_pred HHHHHhcCCCCChH
Confidence 33333333444433
No 109
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.01 E-value=5.2 Score=38.81 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=8.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|.++...++.++..++.+...
T Consensus 384 l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 384 LQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333
No 110
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=79.70 E-value=4.9 Score=28.93 Aligned_cols=29 Identities=41% Similarity=0.439 Sum_probs=19.4
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
+..++..|+.+..+++.++..|+.+++.|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666677777777777777777776
No 111
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=79.51 E-value=9.6 Score=30.37 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhcc--chhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASL--LSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L--~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+.++..+++.++...+.| ..+++.|..+..+++.+...|..++..+..++.-
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345577777777777766 5667777777777777777777777777666554
No 112
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=79.03 E-value=8.5 Score=33.93 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=8.2
Q ss_pred hhhhhHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELR 133 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk 133 (241)
|..+|+++.+.|++++.
T Consensus 160 ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555444444444
No 113
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.75 E-value=6.5 Score=36.59 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=10.6
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
++++++.|..|++.|.+....|-.+..+|
T Consensus 168 ~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 168 VQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 33333333333333333333333333333
No 114
>PRK09039 hypothetical protein; Validated
Probab=78.57 E-value=5.2 Score=37.91 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQ 138 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~ 138 (241)
|...-....+...+|..|+.+++.|...+..|..+......+....+.+|+.|+..|...++.
T Consensus 125 L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666778888888888888888888888888888888888889998888887644
No 115
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=78.46 E-value=1.3 Score=38.71 Aligned_cols=46 Identities=28% Similarity=0.351 Sum_probs=36.7
Q ss_pred ccchhhHHHhhHHHhhHhHHHhhhccCCCC--CCCchhhhHHHHHHHHH
Q 026212 38 RVHKAEREKLKREHLNDLFLDLANAVEVNQ--PNNGKACVLNEAARLLK 84 (241)
Q Consensus 38 k~~Ka~rER~RRdkLNerF~~L~slL~P~~--~K~DKasIL~DAI~ylk 84 (241)
++-++.+||+|=.-||+-|..|+.++ |.. .|..|.--|--|.+|+-
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~ii-ptlPsdklSkiqtLklA~ryid 126 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKII-PTLPSDKLSKIQTLKLAARYID 126 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhc-CCCCccccccccchhhcccCCc
Confidence 35678999999999999999999987 876 36666666667777654
No 116
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.23 E-value=17 Score=34.80 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=30.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTI 109 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~ 109 (241)
+..=+.+|.|+-+-.+.|..+++.|+.....++..++.|..
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 34446788999999999999998888877766666555544
No 117
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=78.22 E-value=14 Score=31.61 Aligned_cols=30 Identities=23% Similarity=0.511 Sum_probs=18.5
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 107 VTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 107 L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+..||.++|++...++..|..+...+..-+
T Consensus 111 ~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei 140 (177)
T PF07798_consen 111 LNLEKGRIREEQAKQELKIQELNNKIDTEI 140 (177)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777666666666655555443
No 118
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=78.08 E-value=7.2 Score=28.61 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
|.+|-.+|+.|.. ++..|..+.+-||.+....|.|-.+-.+.|-..
T Consensus 5 id~Ls~dVq~L~~-------kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 5 IDQLSSDVQTLNS-------KVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555554 455555555555666666666666666665554
No 119
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.68 E-value=8 Score=29.01 Aligned_cols=40 Identities=33% Similarity=0.358 Sum_probs=22.8
Q ss_pred HHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 90 IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 90 v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
...|..+++.....++..-.+.++|++|+..|+.|.+.+.
T Consensus 28 ~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 28 NKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444456666666777777777777765543
No 120
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=77.33 E-value=4.4 Score=32.42 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
-+.+|+.+++.++.+++.++++...| ++|...|+.+.+=++..-...+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L-------~~eI~~L~~~~dyiEe~AR~~L 75 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQL-------FAEIDDLKGGQEAIEERARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhCcHHHHHHHHHHHc
Confidence 45667777777776666655544444 4444444444455666655543
No 121
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=77.31 E-value=10 Score=32.14 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+...+-.++|+.|+.+|+.|+..+...-.+-+--| |+..-..|+.|++++++++..
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaK--l~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAK--LNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 55667788999999999998887655443333333 455555556666655555544
No 122
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.26 E-value=6.8 Score=36.94 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+++|++++.++..++.....++.++..+..++.+....+..+|..++.++..
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555555555555555556666655554
No 123
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=76.83 E-value=9.3 Score=31.45 Aligned_cols=58 Identities=28% Similarity=0.366 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-cchhhhHHHH--------hhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENAS-LLSESHYVTI--------EKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~-L~ees~~L~~--------EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
..+|-+||-+|..+++.-..+.+. .+..++.+.. +..+|+++..+|+.++..|+++++
T Consensus 41 ~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 41 AEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578889999998888754433221 3333333332 335677777788888888877765
No 124
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=76.75 E-value=2.6 Score=32.61 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=21.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 112 NELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
.+|.+||.+||.+|.+|+.+|+...+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56888899999999988888887543
No 125
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.70 E-value=13 Score=40.82 Aligned_cols=84 Identities=26% Similarity=0.321 Sum_probs=55.9
Q ss_pred HhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 46 KLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
|.+.|.|+..+..+..-+ ..+=.+-+...-.=+++|..+|++|+..+..|.++..+++.+-.+.++|+..++.+|
T Consensus 371 k~~~d~l~k~I~~~~~~~-----~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i 445 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEKQT-----NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEI 445 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH-----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455666777777766654 122223366666778888888888888888888888877777666666666666665
Q ss_pred HHHHHHHHH
Q 026212 126 EVLQSELRA 134 (241)
Q Consensus 126 e~Le~qlk~ 134 (241)
..|...++.
T Consensus 446 ~~l~k~i~~ 454 (1074)
T KOG0250|consen 446 LQLRKKIEN 454 (1074)
T ss_pred HHHHHHHHH
Confidence 555554443
No 126
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=76.68 E-value=7.1 Score=32.62 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++|..+|+.|....+...+-++..+.|..+++++...++.+++.++.-+..
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 356788888888777777777888888888888888888888887776654
No 127
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=76.53 E-value=1.9 Score=41.10 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTI 109 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~ 109 (241)
+|||=|+.+|.-|+.+|..|-||++.||.
T Consensus 312 EYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred HHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 79999999999999999999999988864
No 128
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=76.35 E-value=5.9 Score=32.59 Aligned_cols=40 Identities=30% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 89 QIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 89 ~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
+|=+|....+.|.+++..++.|-=.||.||+.|-.=|++|
T Consensus 64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3334444444444455555555455555555555555554
No 129
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=76.14 E-value=1.6 Score=34.60 Aligned_cols=47 Identities=34% Similarity=0.488 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQ 124 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e 124 (241)
+--.||.+|..+++.|..++..|..++..|..+..++++....|+..
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~ 68 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRA 68 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 34456667777777666666655555555544444444444444433
No 130
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=76.07 E-value=4.4 Score=33.34 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
||.+.-.+.+++-..|-.+.-.||.....|.+....+++|+..|++|-.-|.|-++.-|.
T Consensus 46 ~a~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 46 DAVEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred cccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 455566677777788888888899999999999999999999999999999998888653
No 131
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.03 E-value=15 Score=33.34 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
=++-|++++++...+.+.+++....|+..-.++.+|-.+|..|-++|+.|+..
T Consensus 159 ~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 34445555555555555566666666666666777777777777777777654
No 132
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.01 E-value=7.5 Score=42.48 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhh-hHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSES-HYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees-~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
.++...+.+++.++..|+.....+.++. +.+..++.+.+++...|+.|+++++.+
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~ 416 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQ 416 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554444 455555555555555555555555543
No 133
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.17 E-value=19 Score=31.02 Aligned_cols=55 Identities=27% Similarity=0.323 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
--++|+.+|+.|+.+|..|+..++.+......|.+....|+.+-..+.......+
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l 144 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELL 144 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888877777766666677777777777777766655544
No 134
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=75.08 E-value=5.7 Score=36.71 Aligned_cols=43 Identities=23% Similarity=0.177 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
+.+.-+.+|++|.++|+.++..|.++. .....+|+.||.+|+.
T Consensus 63 ~~~~~~~~l~~EN~~Lr~e~~~l~~~~---~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 63 ENLKDVNNLEYENYKLRQELLKKNQQL---EILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 333444445555555555555442221 1122235555555554
No 135
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.93 E-value=18 Score=40.17 Aligned_cols=81 Identities=23% Similarity=0.266 Sum_probs=40.9
Q ss_pred hhHhHHHhhhccCCCCCC-Cchh-hhHHHHHHHHHHHHHHHHHHHHhhh----------ccchhhhHHHHhhhhhhhhhh
Q 026212 52 LNDLFLDLANAVEVNQPN-NGKA-CVLNEAARLLKDLFSQIESLNKENA----------SLLSESHYVTIEKNELKEENS 119 (241)
Q Consensus 52 LNerF~~L~slL~P~~~K-~DKa-sIL~DAI~ylk~Lr~~v~~Lk~~n~----------~L~ees~~L~~EKneLRdEk~ 119 (241)
+++++.+|+..+ |.... ..|. +=+.+.+..+..|..+|.+++.... .+++.+..++.|.+++.++..
T Consensus 804 ~ee~~~~lr~~~-~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~ 882 (1293)
T KOG0996|consen 804 LEERVRKLRERI-PELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAA 882 (1293)
T ss_pred HHHHHHHHHHhh-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 566777777764 53211 1111 1123344455555566666654421 133445566666666664444
Q ss_pred hhHHHHHHHHHHHHH
Q 026212 120 SLESQIEVLQSELRA 134 (241)
Q Consensus 120 ~Lk~e~e~Le~qlk~ 134 (241)
. |++|+.|+.++-.
T Consensus 883 K-k~~i~~lq~~i~~ 896 (1293)
T KOG0996|consen 883 K-KARIKELQNKIDE 896 (1293)
T ss_pred H-HHHHHHHHHHHHH
Confidence 4 5666666666543
No 136
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.89 E-value=6 Score=36.88 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDLNIPPEFQ 150 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~~~~~p~f~ 150 (241)
+.|+..++.+..+...++..+..|..+-..|.....+-+.|.++.++.|+.. .++-|.||
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL-------q~vRPAfm 224 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL-------QSVRPAFM 224 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcChHHH
Confidence 3455555555566666666666666777777777778888888888888874 36666554
No 137
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.70 E-value=4.4 Score=39.29 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=11.4
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 109 IEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 109 ~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.-..||+.-++.|+.+++.||+|+.
T Consensus 239 Rt~EeL~~G~~kL~~~~etLEqq~~ 263 (365)
T KOG2391|consen 239 RTEEELNIGKQKLVAMKETLEQQLQ 263 (365)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444
No 138
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.52 E-value=13 Score=33.23 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhh-------hhhHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEEN-------SSLESQIEVLQSELRA 134 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk-------~~Lk~e~e~Le~qlk~ 134 (241)
+.+.+++++..+...|.++++.|+.|...|+..+ ..++.++++|++|+..
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333333 3334444444444443
No 139
>PF14282 FlxA: FlxA-like protein
Probab=74.42 E-value=6.4 Score=31.38 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccchh---h-hHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSE---S-HYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ee---s-~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
-..|+.|..++..|..+...|... . ..-+.....|..+...|.++|-.|+.+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888777766652 1 122222233555555555555555544433
No 140
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.10 E-value=7.9 Score=32.47 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHh
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIE 110 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~E 110 (241)
.|+.-+-+|..++..|+.++..+..+|..|...
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K 43 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKK 43 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666655555555544433
No 141
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=74.04 E-value=18 Score=33.21 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=7.3
Q ss_pred hhhHHHhhHHHhhH
Q 026212 41 KAEREKLKREHLND 54 (241)
Q Consensus 41 Ka~rER~RRdkLNe 54 (241)
|...++.||.|=|+
T Consensus 191 ~~~~y~err~rNN~ 204 (269)
T KOG3119|consen 191 KDPEYKERRRRNNE 204 (269)
T ss_pred CCHHHHHHHHhhhH
Confidence 34455555555554
No 142
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.03 E-value=6.2 Score=28.84 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=38.7
Q ss_pred HHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Q 026212 90 IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPD 142 (241)
Q Consensus 90 v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~ 142 (241)
+.+|+.+...+...+..++.|-.+++++...++.-+.+|=.-+....++..||
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~iNPF 54 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 34444444445555777778888889999999999988888888877666665
No 143
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=73.91 E-value=6.3 Score=31.53 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=26.5
Q ss_pred ccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 99 SLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 99 ~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.+++++..++.+..+|+.+|..|+.||+.|++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35566777788888899999999999999977
No 144
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=73.90 E-value=8.3 Score=33.97 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=11.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH
Q 026212 113 ELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 113 eLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
++.++...++.....++.++..+
T Consensus 123 ~~~~~~~~~~~~l~~l~~~l~~~ 145 (302)
T PF10186_consen 123 ELQNELEERKQRLSQLQSQLARR 145 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555543
No 145
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.88 E-value=10 Score=38.10 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNK-ENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~-~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|.+-.+.++++..++++-+. +++.++.+++.|..|-.+||....+||+.+++|....+.
T Consensus 277 l~Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr 336 (502)
T KOG0982|consen 277 LSEEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQR 336 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44444555555555555443 556677888889999999999999999999888777654
No 146
>PRK00736 hypothetical protein; Provisional
Probab=73.83 E-value=16 Score=27.16 Aligned_cols=50 Identities=8% Similarity=0.035 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+..++.+|+....-.+.-+.+|....-+-..+...|+.++..|..+++.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666665555555666666666666777777777888887777764
No 147
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=73.74 E-value=17 Score=32.86 Aligned_cols=52 Identities=29% Similarity=0.413 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHH----HhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVT----IEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~----~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|..|+.+++.|+..|..|...+.+|. .+...+......|..++..+..++..
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 34444444444455555555554442 23333334444444444444444433
No 148
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=73.67 E-value=10 Score=38.69 Aligned_cols=50 Identities=28% Similarity=0.359 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+.++...+..|+.+...+...++.|..|+..|+.|+.+|..++..+..++
T Consensus 143 ~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 143 LDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555554433
No 149
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=73.60 E-value=14 Score=31.08 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=8.9
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 109 IEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 109 ~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
.|...|...+..|..++++++.+|
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 150
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=73.51 E-value=10 Score=27.40 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
|++=..+|+.+-+.-..+......+..+|+.||..|+++++.++
T Consensus 6 l~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 6 LEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444433333455667788889999999999988765
No 151
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=73.50 E-value=9.7 Score=36.43 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=48.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhh-----ccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 71 GKACVLNEAARLLKDLFSQIESLNKENA-----SLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 71 DKasIL~DAI~ylk~Lr~~v~~Lk~~n~-----~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
.-+-|.++.+.-.-+|+.+.+++-+..- -...++.++-...-|||.|..+|+.+++.|+.+
T Consensus 253 efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 253 ENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456889999999999999888775443 256788888888888999999999998888754
No 152
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=73.48 E-value=8.7 Score=32.69 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=6.0
Q ss_pred hhhhHHHHHHHHHHH
Q 026212 118 NSSLESQIEVLQSEL 132 (241)
Q Consensus 118 k~~Lk~e~e~Le~ql 132 (241)
+..|+.+|+.|+..+
T Consensus 53 ~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 53 NEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 153
>PF14282 FlxA: FlxA-like protein
Probab=73.44 E-value=11 Score=29.98 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhccchhhhHHHHhhh----hhhhhhhhhHHHHHHHHHHHHHH
Q 026212 87 FSQIESLNKENASLLSESHYVTIEKN----ELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 87 r~~v~~Lk~~n~~L~ees~~L~~EKn----eLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
-.+|+.|+.....|++++..|..... +-......|..+|.-|+.||...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666655222 12223345666666666666554
No 154
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.42 E-value=16 Score=26.85 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhccchhh
Q 026212 83 LKDLFSQIESLNKENASLLSES 104 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees 104 (241)
|.+|..+|..|..+...+..++
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555443
No 155
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=73.34 E-value=18 Score=28.83 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+..+-|.+++.+.-.++..|..|..++.+|+.+...-++ ...+..++++++.+++.
T Consensus 13 ~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 13 RSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence 3444455555555555556666666666666555444333 55677777777777765
No 156
>PRK14011 prefoldin subunit alpha; Provisional
Probab=73.28 E-value=12 Score=31.80 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+.+|++| |..+++.|+...+.|.+.+..+..+.++|+.+ |...+..++++.+.
T Consensus 86 ~~eA~~~---~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~---L~~k~~~~~~~~~~ 138 (144)
T PRK14011 86 VSEVIED---FKKSVEELDKTKKEGNKKIEELNKEITKLRKE---LEKRAQAIEQRQAQ 138 (144)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Confidence 6788887 56788888888888888888888777777765 44445555555443
No 157
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.25 E-value=13 Score=40.77 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=46.1
Q ss_pred hHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHH------HHHHHHHHHHHHhhhc-----cchhhhHHHHhhhhhhh
Q 026212 48 KREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLL------KDLFSQIESLNKENAS-----LLSESHYVTIEKNELKE 116 (241)
Q Consensus 48 RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~yl------k~Lr~~v~~Lk~~n~~-----L~ees~~L~~EKneLRd 116 (241)
..+.+++.+..|+.-| ..-...---|.|-|.|+ .++..++..|..++.. ++.+...|..+.+.|..
T Consensus 992 e~~~l~~~i~~l~kel---~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~ 1068 (1311)
T TIGR00606 992 HQEKINEDMRLMRQDI---DTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKR 1068 (1311)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777765 21223333467888888 7777777777766654 33444444444444444
Q ss_pred hhhhhHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELR 133 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk 133 (241)
+++.|-.++.+|+.|+.
T Consensus 1069 ~~a~l~g~~k~le~qi~ 1085 (1311)
T TIGR00606 1069 NHVLALGRQKGYEKEIK 1085 (1311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 43333333444444433
No 158
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=73.02 E-value=19 Score=35.12 Aligned_cols=60 Identities=32% Similarity=0.453 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhhccchhhh----------HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Q 026212 83 LKDLFSQIESLNKENASLLSESH----------YVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDL 143 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~----------~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~~ 143 (241)
.++|+.+++.|+.+...+..+++ .|..+..+|+++...|+.++..++.++...+ ...|++
T Consensus 37 ~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~iPN~ 106 (425)
T PRK05431 37 RRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELL-LRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 34455555555554444443333 4555666677777777777777777777743 334443
No 159
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.90 E-value=8.1 Score=33.39 Aligned_cols=49 Identities=27% Similarity=0.274 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
+|..+++++...++.|+.|.-.|..+.|-+.+....|+.|=..|=+.+-
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444445555555555555555555555555555544433
No 160
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=72.90 E-value=11 Score=32.09 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=9.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q 026212 113 ELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 113 eLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.|+.|++++..|.+-+...+++
T Consensus 92 ~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 92 KLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 161
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.84 E-value=15 Score=36.47 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
...|+.++.+|+.++..+..++.....+..+++..+..+...+..|+.|-
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555556666666666666666665
No 162
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.77 E-value=9.6 Score=30.38 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhccchhhhHHHHhhhhh--hhhhhhhHHHHHHHHHHHHH
Q 026212 87 FSQIESLNKENASLLSESHYVTIEKNEL--KEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 87 r~~v~~Lk~~n~~L~ees~~L~~EKneL--RdEk~~Lk~e~e~Le~qlk~ 134 (241)
++++++|.+.......++..+.++...| +++...|+.++.+++.+++.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4555555444444444455555555554 55555555555555554444
No 163
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=72.74 E-value=11 Score=30.98 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
.+|++.++.|+.++..+...+.+|..+.++++.....=|..+
T Consensus 40 d~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 40 DQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666666666666666655444333333
No 164
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.58 E-value=19 Score=31.48 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=6.0
Q ss_pred hHHHhhHhHHHh
Q 026212 48 KREHLNDLFLDL 59 (241)
Q Consensus 48 RRdkLNerF~~L 59 (241)
|++-.|.-|.+|
T Consensus 60 r~~ly~~~F~EL 71 (189)
T PF10211_consen 60 REELYSQCFDEL 71 (189)
T ss_pred HHHHHHHHHHHH
Confidence 444555555554
No 165
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=72.54 E-value=22 Score=26.34 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
-|..=|+---.|.+++.+.+..|-.+..++++-...-.+|..+...|+.+++.+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355556666677778877777777777666666555555555555555555554
No 166
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.46 E-value=9.7 Score=35.01 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
..|..+++.++....+|..++..|..+.-+|.++...|+.++
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333333333333333
No 167
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=72.30 E-value=28 Score=28.14 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=41.1
Q ss_pred hhHHHhhHHHhhHhHHHhhhccCCCCCCCchhhh-HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhh
Q 026212 42 AEREKLKREHLNDLFLDLANAVEVNQPNNGKACV-LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSS 120 (241)
Q Consensus 42 a~rER~RRdkLNerF~~L~slL~P~~~K~DKasI-L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~ 120 (241)
.....++|..|......+...+ -..++ +...+..+..|..+++.++.+++.|..+...|+.|.+.|+|+
T Consensus 17 ~~~~~~~~~~l~~~l~~~l~~f-------~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg--- 86 (117)
T COG2919 17 GERRVRRRRILTLVLLALLALF-------QYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG--- 86 (117)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 3445566666655555554443 11111 223344455666666666666666655555555555555555
Q ss_pred hHHHHHHHHHHHHHH
Q 026212 121 LESQIEVLQSELRAR 135 (241)
Q Consensus 121 Lk~e~e~Le~qlk~r 135 (241)
.+-++.+-+..
T Consensus 87 ----~~~i~e~AR~~ 97 (117)
T COG2919 87 ----RDYIEERARSE 97 (117)
T ss_pred ----HHHHHHHHHHH
Confidence 44455444444
No 168
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=72.24 E-value=15 Score=31.46 Aligned_cols=29 Identities=28% Similarity=0.225 Sum_probs=11.9
Q ss_pred hhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 102 SESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 102 ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
+|+..|+.|..+...|...||.|.+.|+.
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444443
No 169
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=72.09 E-value=5.6 Score=27.78 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHh
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIE 110 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~E 110 (241)
.++.+|..++..|+.+|..|..++..|..|
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356666666777766666666666655543
No 170
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=71.83 E-value=14 Score=37.40 Aligned_cols=41 Identities=34% Similarity=0.352 Sum_probs=23.1
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDLNIPP 147 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~~~~~p 147 (241)
+...+..+.++|.+++..|+++++++++++.. ..||-+.+.
T Consensus 94 ~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~----l~~~~~ld~ 134 (646)
T PRK05771 94 ELEKIEKEIKELEEEISELENEIKELEQEIER----LEPWGNFDL 134 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhcCCC
Confidence 33444555555666666666666666666554 345555444
No 171
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=71.69 E-value=17 Score=31.82 Aligned_cols=62 Identities=26% Similarity=0.232 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.=|.+++..|.+=+.+.++|..-|.-|.+........-..|.+|..+|..+-+++..+|..+
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777777787777777776666666665557777777777777766666544
No 172
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=71.43 E-value=15 Score=28.58 Aligned_cols=50 Identities=30% Similarity=0.266 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 88 SQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 88 ~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
++-++|-.+...||..+..|.....++++|+..|+.|-+-|++=+...++
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888889999999999999999999999999999988888764
No 173
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=71.36 E-value=26 Score=26.42 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhh
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEEN 118 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk 118 (241)
+.++++...++.++.+.+.+..++..+..+-|++-++-
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv 63 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDV 63 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 174
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.31 E-value=11 Score=34.64 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=54.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.+-.+||.--+.-=-+.|.++.+||+++..+.+++..|+.|.+.|+.+|..|=..|-=|+.
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778899888888889999999999999999999999999999999999999776655544
No 175
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.25 E-value=11 Score=31.01 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
.+|-.+-+.|+..+..|+++-..+..-+++|+.+...+...+
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555444443
No 176
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.22 E-value=7.4 Score=34.02 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=8.8
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le~qlk 133 (241)
+-.+...|+.++..|+.+|.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 177
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=70.75 E-value=12 Score=37.05 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=8.2
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELRA 134 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk~ 134 (241)
+...++.+|+.++..+..
T Consensus 88 ~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 88 DLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 344444444444444443
No 178
>PF15294 Leu_zip: Leucine zipper
Probab=70.40 E-value=7.1 Score=36.70 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
|..++..|+.+|..|.+++..+.......-+|+..|+.++..|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777777777777777777777666
No 179
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=70.38 E-value=10 Score=36.22 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
|-.++++++..+..|+.+.+.+..||.|+..|....+.-..+|++||-..+
T Consensus 131 lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L 181 (319)
T PF09789_consen 131 LVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYIL 181 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333446666777777777777777777777777777777777777776654
No 180
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=70.21 E-value=26 Score=31.36 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
-.|...=..|+-..|+.|+.+.++|.+-.+ +.+ -..+.-++.+|..+.+.||+.++.|++..
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~----ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLE----KAK-TVEDLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH----hcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444344444444444444444443222 222 12344556667777777777777777664
No 181
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=69.82 E-value=19 Score=34.62 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhh
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKE 116 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRd 116 (241)
+++-++..+.+|..+++.|..+|+.|.++...+..+..++-+
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~ 172 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVN 172 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777777777777666655554444433333
No 182
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=69.71 E-value=9.3 Score=39.34 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|.-.|..+...++..+..+.+++..|+.||.........|...+.+|+.|+..
T Consensus 16 ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 16 YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44555555555555555555555555555555555555555555555554443
No 183
>PLN02678 seryl-tRNA synthetase
Probab=68.78 E-value=26 Score=34.80 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=25.5
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDL 143 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~~ 143 (241)
..+|..+..+|+++...|+.+...++.++...+ ...|++
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~-~~iPNi 111 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEVQEAKAALDAKL-KTIGNL 111 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 345556666777777777777777777777754 344443
No 184
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=68.62 E-value=8.7 Score=36.56 Aligned_cols=44 Identities=30% Similarity=0.363 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..|+.++.+++..++.|++.. .+|..+...++.++++++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 47 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKL-------RDLEAENEKLERELERLKSELEK 47 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444444444 44445555556666666666665
No 185
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=68.51 E-value=32 Score=25.33 Aligned_cols=41 Identities=24% Similarity=0.203 Sum_probs=16.4
Q ss_pred HHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 92 SLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 92 ~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.+..+...++.++..++.|-++|+.|...|.. .++++.--+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar 68 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 33333333333344444444444444444433 334444333
No 186
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=68.47 E-value=29 Score=28.42 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+.+....+..|..+...|-..|-.++.++..++.+..++.++-..|+.+-..++++++...
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666777777777777777888888888888888888888888888888888753
No 187
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=68.42 E-value=14 Score=33.61 Aligned_cols=57 Identities=30% Similarity=0.267 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++-....+|+.+......+...|..++..+..+...|.++......|...|+.++..
T Consensus 58 eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 58 EAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555556666677788888888888888888888888888887765
No 188
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=68.40 E-value=18 Score=32.22 Aligned_cols=60 Identities=35% Similarity=0.298 Sum_probs=42.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 72 KACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 72 KasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
|+-.|.-|. ++.|-+-...+..+|..|..++.+|..|-..|++.+..|+.++..|..+-.
T Consensus 142 k~~ale~~A--~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~ 201 (206)
T PF14988_consen 142 KAQALELAA--KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQW 201 (206)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 445666677777888888888888888888888888888888887776643
No 189
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=68.16 E-value=21 Score=31.43 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=10.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..|..+-..++.++++.+.+++.
T Consensus 162 ~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 162 SRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 190
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.13 E-value=24 Score=38.82 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=54.1
Q ss_pred HhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 46 KLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
...++++++.+..|..-+ ... +..|.. |+..+.-..+|..++++|+.++..+.+++..+..+...|..+...+..+.
T Consensus 849 ~~e~e~~~~eI~~Lq~ki-~el-~~~klk-l~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 849 RKLIQDQQEQIQHLKSKT-NEL-KSEKLQ-IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 445556666666664433 211 222222 34477788888888888888888887777777777766766666666666
Q ss_pred HHHHHHHHH
Q 026212 126 EVLQSELRA 134 (241)
Q Consensus 126 e~Le~qlk~ 134 (241)
+++..+...
T Consensus 926 ~~~~~~~~~ 934 (1311)
T TIGR00606 926 EELISSKET 934 (1311)
T ss_pred HHHHHHHHH
Confidence 555544443
No 191
>PRK14127 cell division protein GpsB; Provisional
Probab=67.96 E-value=20 Score=29.34 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=9.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~qlk 133 (241)
.+|++++.+|+.++..++.++.
T Consensus 47 ~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 47 EELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444444333
No 192
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=67.80 E-value=16 Score=29.90 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026212 76 LNEAARLLKDLFSQIESLNKEN 97 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n 97 (241)
|...-.=+.+++.++..|+.+.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEA 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444433
No 193
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.65 E-value=17 Score=35.39 Aligned_cols=11 Identities=64% Similarity=0.749 Sum_probs=5.6
Q ss_pred cchhhHHHhhH
Q 026212 39 VHKAEREKLKR 49 (241)
Q Consensus 39 ~~Ka~rER~RR 49 (241)
+-++.+||+||
T Consensus 211 visa~~eklR~ 221 (365)
T KOG2391|consen 211 VISAVREKLRR 221 (365)
T ss_pred HHHHHHHHHHH
Confidence 34555555544
No 194
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.53 E-value=15 Score=34.78 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=48.9
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 68 PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 68 ~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
--++|.+.+.. |.-|+..+++|++.+..++.+.++...+..-++.....|+.+...|..+|+.|
T Consensus 103 LDNek~~l~yq----vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 103 LDNEKSALMYQ----VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred hchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788887654 44467777888888888887777777777777788888888888888888877
No 195
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=67.45 E-value=19 Score=28.11 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 026212 82 LLKDLFSQIESLNKENA 98 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~ 98 (241)
++++|...+..|+....
T Consensus 9 al~rL~~aid~LE~~v~ 25 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVD 25 (89)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666665433
No 196
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=67.34 E-value=10 Score=35.55 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=26.8
Q ss_pred HHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHH
Q 026212 49 REHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTI 109 (241)
Q Consensus 49 RdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~ 109 (241)
|+++|+.=.+.+++++-...+.+. +.+.-.-+++|++++++++.+.+.+..+++.+..
T Consensus 5 ~~~~~~~~~~~r~l~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 62 (378)
T TIGR01554 5 KEQREEIVAEIRSLLDKAEKLEKE---LTAAALEKEELETDVEKLKEEIKLLEDAIADLEK 62 (378)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677777777766300111111 1222222345555555555555544444444433
No 197
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=67.31 E-value=16 Score=32.89 Aligned_cols=72 Identities=22% Similarity=0.180 Sum_probs=35.8
Q ss_pred HhhhccCCCCCCCchhhhH-----------HHHHHHHHHHHHHHHHHHHhhhccch--------------hhhHHHHhhh
Q 026212 58 DLANAVEVNQPNNGKACVL-----------NEAARLLKDLFSQIESLNKENASLLS--------------ESHYVTIEKN 112 (241)
Q Consensus 58 ~L~slL~P~~~K~DKasIL-----------~DAI~ylk~Lr~~v~~Lk~~n~~L~e--------------es~~L~~EKn 112 (241)
.|-++++-+.-..+|..+- .+--.|+.+|.++++.+.....+|.+ ...+|+.+.|
T Consensus 47 vLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kkln 126 (203)
T KOG3433|consen 47 VLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLN 126 (203)
T ss_pred HHHHHhccchHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3445555544445555544 23334556666666665554444443 3334555555
Q ss_pred hhhhhhhhhHHHHHHHH
Q 026212 113 ELKEENSSLESQIEVLQ 129 (241)
Q Consensus 113 eLRdEk~~Lk~e~e~Le 129 (241)
-|+++...|+.|..+++
T Consensus 127 slkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 127 SLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55554444544444443
No 198
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=67.19 E-value=15 Score=30.13 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
-++++...++.|..+|..|-+..-.+..+..++|++...+..+...|+.++...
T Consensus 28 ~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 28 QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666665555566666666666666666666666553
No 199
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=66.97 E-value=35 Score=33.29 Aligned_cols=86 Identities=19% Similarity=0.230 Sum_probs=49.6
Q ss_pred HHhhHhHHHhhhccC-CCC-CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHH------hhhhhhhhhhhh
Q 026212 50 EHLNDLFLDLANAVE-VNQ-PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTI------EKNELKEENSSL 121 (241)
Q Consensus 50 dkLNerF~~L~slL~-P~~-~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~------EKneLRdEk~~L 121 (241)
+.|-++|.+|..+|. |.. +..++..=|+.-+..|..+-....+++.-.+.|.+ .+++-. .+...++|...|
T Consensus 10 ~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~-a~~~l~~~~D~em~ema~~Ei~~~ 88 (363)
T COG0216 10 ESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLED-AKEMLAEEKDPEMREMAEEEIKEL 88 (363)
T ss_pred HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCHHHHHHHHHHHHHH
Confidence 446678888888772 221 44455555555544444444444444433322221 111111 112267899999
Q ss_pred HHHHHHHHHHHHHHH
Q 026212 122 ESQIEVLQSELRARV 136 (241)
Q Consensus 122 k~e~e~Le~qlk~r~ 136 (241)
+.+++.|+.+|+..+
T Consensus 89 ~~~~~~le~~L~~lL 103 (363)
T COG0216 89 EAKIEELEEELKILL 103 (363)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999965
No 200
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.95 E-value=19 Score=32.74 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 88 SQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 88 ~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
..+..|+.....+.++-.......+.+.+|...||.+|.++..+
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444555555555555555444
No 201
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=66.68 E-value=19 Score=34.40 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhhccchh--------hhHHHHhhhhhhhhhhhh
Q 026212 84 KDLFSQIESLNKENASLLSE--------SHYVTIEKNELKEENSSL 121 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ee--------s~~L~~EKneLRdEk~~L 121 (241)
+.|..++..|+.....++.. ++.|......|..||..|
T Consensus 51 ~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L 96 (310)
T PF09755_consen 51 KHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETL 96 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444443321 344444444444444443
No 202
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=66.53 E-value=3.9 Score=37.41 Aligned_cols=49 Identities=27% Similarity=0.355 Sum_probs=37.0
Q ss_pred CccchhhHHHhhHHHhhHhHHHhhhccCC-CC--CCCchhhhHHHHHHHHHHH
Q 026212 37 KRVHKAEREKLKREHLNDLFLDLANAVEV-NQ--PNNGKACVLNEAARLLKDL 86 (241)
Q Consensus 37 rk~~Ka~rER~RRdkLNerF~~L~slL~P-~~--~K~DKasIL~DAI~ylk~L 86 (241)
|+..=+.|||.|=-.||+-|..|+.+| | .. +|..|.=.|.=|-.||.-|
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LRevi-P~~~~~~klskIetl~~a~~yi~al 123 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVI-PHGLHPPKLSKIETLRLAANYIAAL 123 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhc-cCcCCCCCCCcchhHHhhhcchhhh
Confidence 456667899999999999999999998 7 33 6888877775555554433
No 203
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=66.41 E-value=29 Score=27.56 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhc-cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 86 LFSQIESLNKENAS-LLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~-L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
=...|..|+...+. .+.+++.|..+++.|.+|+..|+.+++.-..+-+..
T Consensus 32 HE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 32 HETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777755543 566778888888888888888887777666555543
No 204
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.41 E-value=17 Score=39.15 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
|..+=-.++++|..+++.|+..+..|+.+..+|..|..+.-.+.+.|+.+.+.|+.||.
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555666666666666666666666666666666666677777777777777776
No 205
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=65.97 E-value=37 Score=30.03 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=23.5
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 105 HYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 105 ~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
........+++++...|..||..|++.|+..
T Consensus 160 ~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 160 ASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444568889999999999999998864
No 206
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=65.85 E-value=14 Score=29.82 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=29.4
Q ss_pred ccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH---HHHHHh
Q 026212 99 SLLSESHYVTIEKNELKEENSSLESQIEVLQSE---LRARVV 137 (241)
Q Consensus 99 ~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q---lk~r~~ 137 (241)
.++..+..+.+|-..|..++..|++|+.+|++. +..+.+
T Consensus 54 ~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR 95 (117)
T COG2919 54 QLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEERAR 95 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 344445567778888999999999999999999 554443
No 207
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=65.79 E-value=16 Score=38.33 Aligned_cols=13 Identities=23% Similarity=0.389 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHH
Q 026212 121 LESQIEVLQSELR 133 (241)
Q Consensus 121 Lk~e~e~Le~qlk 133 (241)
.+.+++++-.+++
T Consensus 582 a~~~~~~~i~~lk 594 (782)
T PRK00409 582 AKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 208
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=65.61 E-value=29 Score=28.85 Aligned_cols=56 Identities=23% Similarity=0.263 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
+..|++-|.+|+.++++++..+. +++..++ ..+..+...|+.+|+.|+..|+....
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~~---~~I~~i~---~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEAN---DEIARIK---EWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999987553 2333332 23677889999999999999999764
No 209
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=65.61 E-value=11 Score=26.04 Aligned_cols=42 Identities=26% Similarity=0.145 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
-..+|..+|..++.....-..++..|+.+|=.|+||..+|..
T Consensus 7 ~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll~ 48 (49)
T PF04325_consen 7 EHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLLR 48 (49)
T ss_dssp HHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345677788888776665566778888888888888877654
No 210
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=65.53 E-value=16 Score=31.95 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=11.4
Q ss_pred HHHhhhhhhhhhhhhHHHHH
Q 026212 107 VTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 107 L~~EKneLRdEk~~Lk~e~e 126 (241)
+..+..+|+.++..|+.+++
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666655555
No 211
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=65.46 E-value=22 Score=33.81 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=23.2
Q ss_pred HhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 95 KENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 95 ~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.....+.+.+++|..+++++-++.+.|+.....+...++.
T Consensus 48 ~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~e 87 (294)
T COG1340 48 AKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE 87 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555666666666666666666666666555544
No 212
>PRK02224 chromosome segregation protein; Provisional
Probab=65.34 E-value=28 Score=36.01 Aligned_cols=52 Identities=31% Similarity=0.302 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+.+.+|..++..|+.....+..++..+......++++...|+.+++.++.++
T Consensus 349 ~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l 400 (880)
T PRK02224 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333444444444444444444444555544444444
No 213
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=65.28 E-value=20 Score=34.83 Aligned_cols=53 Identities=32% Similarity=0.480 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhccchhh-----------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSES-----------HYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees-----------~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
++|..+++.|+.+...+..++ ..|..+..+|+++...|+.+...++.++...+
T Consensus 40 r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 40 KKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566655444444333 34444555555666666666666666666643
No 214
>KOG3977 consensus Troponin I [Cytoskeleton]
Probab=65.11 E-value=32 Score=31.28 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=49.0
Q ss_pred HHHhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhhhHHHHhhhhhhh
Q 026212 44 REKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENAS-------LLSESHYVTIEKNELKE 116 (241)
Q Consensus 44 rER~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~-------L~ees~~L~~EKneLRd 116 (241)
+|-++|+.=-.+++.=+.|.-|+....|-.+.|.+- -++|.++|..|++++=. ...+|+.|+.+.|.||.
T Consensus 61 qqq~~kEqErqr~LaeR~i~lp~~d~l~d~g~Lq~l---y~~l~arv~~leEEkYDi~~~v~qt~~EIndLtikvnDLRG 137 (221)
T KOG3977|consen 61 QQQELKEQERQRYLAERTIPLPDVDSLDDRGLLQDL---YRELHARVDALEEEKYDIEAKVTQTETEINDLTIKVNDLRG 137 (221)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCCCcccchHHHHHH---HHHHHHHHHHHHHhhcchhheeehhhhhHHHHHHHHHHhcc
Confidence 344555555556666666555777666666666654 46788899999876632 44689999999999997
No 215
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=64.92 E-value=13 Score=36.00 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhh
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSL 121 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~L 121 (241)
..++++|+.+++.|+.++..+..+.+.++.|...+++|..+|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 21 YEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888777666555554444433
No 216
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=64.78 E-value=16 Score=35.04 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhh
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELK 115 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLR 115 (241)
.|..+.++|+.+...+..++..+..+|.++.
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~v~~K~~~E 178 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKFVNAKEEHE 178 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 217
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=64.70 E-value=51 Score=24.80 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.+..++.|..-++++....+.+++++..+..|-+++-.+-..+..++...-..+.
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~ 71 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVD 71 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4455666666777777777777777777777776666666666655554444443
No 218
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=64.67 E-value=18 Score=32.34 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+.++..+++.|+.+.+.|++ |.. +-+--++...++.++.+++.|+..--
T Consensus 134 y~D~~arl~~l~~~~~rl~~----ll~-ka~~~~d~l~ie~~L~~v~~eIe~~~ 182 (262)
T PF14257_consen 134 YVDLEARLKNLEAEEERLLE----LLE-KAKTVEDLLEIERELSRVRSEIEQLE 182 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHH-hcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33667777666665554443 222 33345667788888888888887754
No 219
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=64.58 E-value=14 Score=31.48 Aligned_cols=43 Identities=26% Similarity=0.289 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSL 121 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~L 121 (241)
.++||++ |..++++|+.....+++.+..|......++.+.+.+
T Consensus 92 ~~eAie~---l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 92 ADEAIEF---LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776 556777777777777777777766666666555544
No 220
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=64.55 E-value=33 Score=28.96 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+.+...-+..+...++++..+...+..+......+..+++.+...+..+.+.++++++.
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666666555555555556666666665555555555543
No 221
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.49 E-value=16 Score=34.75 Aligned_cols=18 Identities=44% Similarity=0.337 Sum_probs=9.6
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELRA 134 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk~ 134 (241)
|..+|-+++-.|++.+|.
T Consensus 235 EIt~LlsqivdlQ~r~k~ 252 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQ 252 (306)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555554
No 222
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=64.27 E-value=19 Score=32.88 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=18.0
Q ss_pred ccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 99 SLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 99 ~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.|+..+..|..|..+||.....+..+++.+++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34555555555555566555555555555554
No 223
>PRK04863 mukB cell division protein MukB; Provisional
Probab=64.25 E-value=17 Score=41.14 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=73.4
Q ss_pred HhhHHHhhHhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhH
Q 026212 46 KLKREHLNDLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
+.++..++.+..+|..++ -.+ +--|=+.+|++.-...-+|+.+++.++.....+.++.+....+.++...+...++
T Consensus 948 ~~~~~~~~~~~~~l~~~~-~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slk 1026 (1486)
T PRK04863 948 QQTQRDAKQQAFALTEVV-QRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLK 1026 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888876 332 5678889999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHH
Q 026212 123 SQIEVLQSELRAR 135 (241)
Q Consensus 123 ~e~e~Le~qlk~r 135 (241)
..+..++++++.-
T Consensus 1027 sslq~~~e~L~E~ 1039 (1486)
T PRK04863 1027 SSYDAKRQMLQEL 1039 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777777664
No 224
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=64.21 E-value=25 Score=31.59 Aligned_cols=39 Identities=28% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 91 ESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 91 ~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.+|.++|+.|++|...|+.+..+++ .|+.|-++|...|.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~----~l~~en~~L~~lL~ 110 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELE----QLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 3455555555555555555544321 34445555555444
No 225
>PLN02320 seryl-tRNA synthetase
Probab=64.04 E-value=35 Score=34.55 Aligned_cols=61 Identities=28% Similarity=0.384 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhccch---------hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 026212 83 LKDLFSQIESLNKENASLLS---------ESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDLN 144 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~e---------es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~~~ 144 (241)
.++|..+++.|+.+...+.. +...|..+..+|+++...|+.+...++.++...+ ...|++.
T Consensus 102 ~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~-l~iPN~~ 171 (502)
T PLN02320 102 MLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEA-QSIPNMT 171 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCC
Confidence 34455556666554443333 3345666777777888888888888888887754 3445443
No 226
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.39 E-value=14 Score=38.36 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhh
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELK 115 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLR 115 (241)
+.|..|+.+++.|+..++.++.++..|..+..+++
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444444444333
No 227
>PRK11415 hypothetical protein; Provisional
Probab=63.27 E-value=21 Score=26.95 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=7.9
Q ss_pred hhhhhhhhhhhHHHHHHH
Q 026212 111 KNELKEENSSLESQIEVL 128 (241)
Q Consensus 111 KneLRdEk~~Lk~e~e~L 128 (241)
..+|+-++..||-+|.++
T Consensus 48 i~~LKk~KL~LKDeI~~~ 65 (74)
T PRK11415 48 VVRMKKQKLQLKDEMLKI 65 (74)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 334444444444444433
No 228
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=63.13 E-value=63 Score=27.99 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=35.6
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
+.+.-.+--.|+.-..++..++..|+.....+...+..|+....+|+.....++.+.+.|-.
T Consensus 79 ~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 79 AAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555677777777777777777766665555555544444444444444444444433
No 229
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.96 E-value=9.6 Score=28.81 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=37.6
Q ss_pred HhhHhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhh
Q 026212 51 HLNDLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKE 116 (241)
Q Consensus 51 kLNerF~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRd 116 (241)
.+..-..+|..+ +++. -..+++=|+.+.-.++..|..+++.++.+...|....+++..+.+++++
T Consensus 30 ~~~~~~~eL~~l-~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 30 ELELTLEELEKL-DDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHTS-STT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666664 4553 2566666666666777777777777766555555555555444444433
No 230
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=62.92 E-value=21 Score=32.23 Aligned_cols=12 Identities=25% Similarity=-0.031 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLF 87 (241)
Q Consensus 76 L~DAI~ylk~Lr 87 (241)
|++-|+-.+-++
T Consensus 100 l~e~~en~K~~~ 111 (203)
T KOG3433|consen 100 LGESIENRKAGR 111 (203)
T ss_pred HHHHHHHHHhhh
Confidence 445555444443
No 231
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=62.86 E-value=24 Score=37.02 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
||-|-.|.+..+..++-+|+.....|+.+|.++.+...||+.+...-+.|.+.|+..+.+-
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 5666677777777788888888888888888888888888888888888888888888764
No 232
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=62.70 E-value=26 Score=26.47 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhh---hhhhhhhHHHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNEL---KEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneL---RdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+||.++..+......|-.++..+-.+.+.+ +......+...++|..+|+..+
T Consensus 30 ~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l 84 (102)
T PF14523_consen 30 ELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEAL 84 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333333 5555566667777777766543
No 233
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=62.65 E-value=12 Score=29.55 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQ 124 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e 124 (241)
.|..-+.-+..|..++..|+.++..|..++..+......|++.....+..
T Consensus 26 fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~ 75 (131)
T PF05103_consen 26 FLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQET 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhh
Confidence 46666667777777777777777777777777766666666654433333
No 234
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=62.56 E-value=21 Score=32.85 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+|.-..+.-...++.+...-..+..++...+.+|..||..|+.+++.|++++....
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666555555555566777777788888888888888888877653
No 235
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=62.53 E-value=16 Score=33.89 Aligned_cols=42 Identities=40% Similarity=0.381 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
+.+...++|..+.+.|+.++..+. .+..+...|++||.+|+.
T Consensus 63 ~~~~~~~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~ 104 (284)
T COG1792 63 EFLKSLKDLALENEELKKELAELE----QLLEEVESLEEENKRLKE 104 (284)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 344444444445555544443222 223333444555555443
No 236
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.40 E-value=19 Score=37.12 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=23.2
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+++....|+++|..+...+..++++|.+.+..
T Consensus 333 dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 333 DVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555677888888888888888888776654
No 237
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.25 E-value=20 Score=32.63 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
+-+|..+++.|+.++..|.-.+.++.-+.+++.+.-..|-.+++++
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666555555555555555555555555554
No 238
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=62.18 E-value=22 Score=35.50 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=9.0
Q ss_pred hhHHHhhHhHHHhhhc
Q 026212 47 LKREHLNDLFLDLANA 62 (241)
Q Consensus 47 ~RRdkLNerF~~L~sl 62 (241)
.+=-.+++-|..+++=
T Consensus 114 ~~~~~~~~~f~i~~~q 129 (447)
T KOG2751|consen 114 ATINVLTRLFDILSSQ 129 (447)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3334456667766664
No 239
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=62.08 E-value=31 Score=38.38 Aligned_cols=93 Identities=23% Similarity=0.272 Sum_probs=50.8
Q ss_pred cchhhHHHhhHHHhhHhHHHhh-hccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH--------------hhhccchh
Q 026212 39 VHKAEREKLKREHLNDLFLDLA-NAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNK--------------ENASLLSE 103 (241)
Q Consensus 39 ~~Ka~rER~RRdkLNerF~~L~-slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~--------------~n~~L~ee 103 (241)
++.-.||+--+-|- .+.-|. ++.-|......|+..=.++ +|..+..+|..|+. ....|++|
T Consensus 1064 Is~eLReQIq~~KQ--~LesLQRAV~TPVvtd~eKvr~rYe~--LI~~iTKrIt~LEk~k~~~l~~ikK~ia~lnnlqqE 1139 (1439)
T PF12252_consen 1064 ISSELREQIQSVKQ--DLESLQRAVVTPVVTDAEKVRVRYET--LITDITKRITDLEKAKLDNLDSIKKAIANLNNLQQE 1139 (1439)
T ss_pred hhHHHHHHHHHHHH--HHHHHHHhhcccccccHHHHHHHHHH--HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 44445554433222 144444 5555666665665543333 34455555555542 22335666
Q ss_pred hhHHHHhhhhhhhhhhhhH-HHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLE-SQIEVLQSELRAR 135 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk-~e~e~Le~qlk~r 135 (241)
++-|..||..+-.....+. ++||+||+||+..
T Consensus 1140 lklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~ 1172 (1439)
T PF12252_consen 1140 LKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVI 1172 (1439)
T ss_pred HHHHHhHHHhhccCCCcccHHHHHHHHHHHHHh
Confidence 6666666665554444332 7899999999973
No 240
>PRK10869 recombination and repair protein; Provisional
Probab=61.52 E-value=43 Score=33.77 Aligned_cols=90 Identities=10% Similarity=0.124 Sum_probs=59.8
Q ss_pred hHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH---hhhccchhhhHHHHhhhhhhhhhhhhHHH
Q 026212 48 KREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNK---ENASLLSESHYVTIEKNELKEENSSLESQ 124 (241)
Q Consensus 48 RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~---~n~~L~ees~~L~~EKneLRdEk~~Lk~e 124 (241)
|=+.+++|+..|..+- + |-. .=+.|.+.|..+++.+++.|+. ....|++++..++.+..++..+.+..+.+
T Consensus 297 ~l~~ie~Rl~~l~~L~---r-Kyg--~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 297 RLAELEQRLSKQISLA---R-KHH--VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHH---H-HhC--CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888864 2 222 2488999999999999999875 34556666666666666666555544444
Q ss_pred -HHHHHHHHHHHHhhcCCCCCCCC
Q 026212 125 -IEVLQSELRARVVQSKPDLNIPP 147 (241)
Q Consensus 125 -~e~Le~qlk~r~~~~~p~~~~~p 147 (241)
..+|+..+..-+. +++++-
T Consensus 371 aA~~l~~~v~~~L~----~L~m~~ 390 (553)
T PRK10869 371 YAKELAQLITESMH----ELSMPH 390 (553)
T ss_pred HHHHHHHHHHHHHH----HcCCCC
Confidence 5566666666553 466655
No 241
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.39 E-value=23 Score=37.19 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHH
Q 026212 120 SLESQIEVLQSELR 133 (241)
Q Consensus 120 ~Lk~e~e~Le~qlk 133 (241)
..+.+.+++-.+++
T Consensus 576 ~a~~~~~~~i~~lk 589 (771)
T TIGR01069 576 ALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 242
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=61.28 E-value=17 Score=36.85 Aligned_cols=52 Identities=27% Similarity=0.283 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhhhccch-hhhHHHHhhhhhhhhhh---hhHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLS-ESHYVTIEKNELKEENS---SLESQIEVLQSELR 133 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~e-es~~L~~EKneLRdEk~---~Lk~e~e~Le~qlk 133 (241)
-|.+||.||-+|.+-.+.|.. .-++|++-+.+|.+||. .|+.||++|..-++
T Consensus 570 s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 570 SLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 467888888888877777653 34667777777777775 78899998876654
No 243
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=60.83 E-value=32 Score=33.36 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=20.6
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
...+...+.+|.++...|+.++..|+.+++.
T Consensus 377 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 377 LKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666677777777777777777766
No 244
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=60.67 E-value=20 Score=28.32 Aligned_cols=36 Identities=25% Similarity=0.144 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTI 109 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~ 109 (241)
+|++-..=-+++++.++++|..+|+.|..|.....+
T Consensus 16 ~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~ 51 (87)
T PF10883_consen 16 LILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAET 51 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445566666666666655555554444333
No 245
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=60.62 E-value=30 Score=31.95 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=26.4
Q ss_pred HHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 89 QIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 89 ~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+..|++||+.|.++...|..+... ....|+.|-++|.+.|..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
Confidence 3445667788777776666444332 333377777777776654
No 246
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.36 E-value=64 Score=26.21 Aligned_cols=39 Identities=10% Similarity=0.279 Sum_probs=25.0
Q ss_pred hhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcC
Q 026212 102 SESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSK 140 (241)
Q Consensus 102 ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~ 140 (241)
+++.++..+...|......|+..+.+++.+|+..+.+.+
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555555666666777777778888887765433
No 247
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=60.34 E-value=39 Score=31.43 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=39.5
Q ss_pred HhhHhHHHhhhcc-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 51 HLNDLFLDLANAV-EVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 51 kLNerF~~L~slL-~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
.||+-|..|..+- .|. ...-+.++|..|-.+...+..-.+.|.........++...-.+.|.|-++...|-.+|
T Consensus 108 ~l~~ff~a~~~ls~~P~-~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I 182 (322)
T TIGR02492 108 YLNNFFNALQELAKNPD-SEALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEI 182 (322)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555433 122 2445677777776666666666666665555555555555555555444444444444
No 248
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=60.26 E-value=35 Score=29.82 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=29.8
Q ss_pred cchhhHHH-----hhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHH---HHHHHHHHHHHHHhhhccchhhhHH
Q 026212 39 VHKAEREK-----LKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARL---LKDLFSQIESLNKENASLLSESHYV 107 (241)
Q Consensus 39 ~~Ka~rER-----~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~y---lk~Lr~~v~~Lk~~n~~L~ees~~L 107 (241)
++=.|.|| +=|+.+..-|.+...+. +...+-.+-.++.. ..+|..++..|+.++..|..++..|
T Consensus 75 VTi~C~ERGlLL~rvrde~~~~l~~y~~l~-----~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l 146 (189)
T PF10211_consen 75 VTIDCPERGLLLLRVRDEYRMTLDAYQTLY-----ESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQEL 146 (189)
T ss_pred HHhCcHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456665 22555555566555544 21222222222222 3455555555555555555544444
No 249
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=60.18 E-value=49 Score=31.54 Aligned_cols=51 Identities=25% Similarity=0.252 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
-|+||=..=|++-+.|.. +++.|..+-.+|||.-..|+.||..|.+-|..+
T Consensus 238 AAtRYRqKkRae~E~l~g-------e~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLG-------ELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678886666665555544 444454554556777777777777776666554
No 250
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=60.14 E-value=27 Score=35.87 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=40.3
Q ss_pred CCchhhhHHHH----HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhh-------hhhhHHHHHHHHHHH
Q 026212 69 NNGKACVLNEA----ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEE-------NSSLESQIEVLQSEL 132 (241)
Q Consensus 69 K~DKasIL~DA----I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdE-------k~~Lk~e~e~Le~ql 132 (241)
-++++.++.+- +.-+.++.++..+|..+...++.+++++..||+||..= -..|.+|.+.+|.++
T Consensus 210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDky 284 (596)
T KOG4360|consen 210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKY 284 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35666666333 33445566777777777788888888888888776442 224455555555544
No 251
>PRK02224 chromosome segregation protein; Provisional
Probab=60.00 E-value=42 Score=34.80 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026212 76 LNEAARLLKDLFSQIESLNKEN 97 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n 97 (241)
|.++.+-+..|+.++++|+...
T Consensus 532 le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 532 IEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555444
No 252
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.99 E-value=23 Score=33.19 Aligned_cols=51 Identities=27% Similarity=0.440 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
+.++.-+|..|.++|+.|+.|...|...-..|--++..|..+.+-+.++|-
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444322222244444444444444444443
No 253
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=59.92 E-value=26 Score=33.26 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhh----HHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESH----YVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~----~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+-|.++-...++|..+++.|+.+...+.++.. .--+....|+|+++.+++.++.|..-+
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyi 114 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYI 114 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777777777766655443221 111233567788887777777665544
No 254
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.91 E-value=34 Score=36.07 Aligned_cols=47 Identities=17% Similarity=0.139 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
|.+|.++-.+++...+.+.....++...+++|.++...|+.+++++.
T Consensus 522 i~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 522 IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333334444444444444444455555555555555544443
No 255
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.91 E-value=26 Score=33.76 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=17.3
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+.+.+..-.+++..+.+.+-.+++++.+++..|
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455555555666666666554
No 256
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=59.83 E-value=27 Score=38.30 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=45.0
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhH--HHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 68 PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHY--VTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 68 ~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~--L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+|+-|..+|.|=+.=|-.|+..+..-++.|.-...+-+| ...|+++.-+....|+.+++.++.+|+.+
T Consensus 398 Qkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~ 467 (1041)
T KOG0243|consen 398 QKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDL 467 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777766666666666666666 55566666666666666666666666654
No 257
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=59.60 E-value=23 Score=36.56 Aligned_cols=54 Identities=26% Similarity=0.300 Sum_probs=46.8
Q ss_pred HHHHHHHHH----HHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQ----IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 81 ~ylk~Lr~~----v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+.|++|..+ ++.|+.++..+++++..+..+.+.|+.||...-..+..|+.+|..
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777665 566788888899999999999999999999999999999999876
No 258
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=59.52 E-value=20 Score=31.60 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
+..+.+..+......++-+..-+..+.++..+...|+.+|...+
T Consensus 130 ~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 130 LEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444333333333334444444444444444444443
No 259
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=59.34 E-value=18 Score=35.32 Aligned_cols=50 Identities=24% Similarity=0.257 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQ 124 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e 124 (241)
|+..+-.-...|++-+..++++|..|+-....++.|.+|..+|.+.|-.|
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 34444445566777777777777777777777777777777777666433
No 260
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.30 E-value=23 Score=35.73 Aligned_cols=55 Identities=35% Similarity=0.423 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHhhhccch---------------hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLS---------------ESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~e---------------es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.-+..|..+.+.|+.+|+.|++ +-.++..|..+|.++.+.|+..+..|+.||...
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566666777777777643 446888999999999999999999999999763
No 261
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=58.94 E-value=39 Score=26.62 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=20.6
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
......|...|..+...|+++|.+++..|+.
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777777777777777665
No 262
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=58.69 E-value=25 Score=35.67 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=13.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Q 026212 113 ELKEENSSLESQIEVLQSELRARVVQSKPD 142 (241)
Q Consensus 113 eLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~ 142 (241)
+|+.+...++.++.+.+.+++.......|+
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~~~~~p~ 295 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELAADPLPL 295 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 333344444444444555555544333444
No 263
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=58.26 E-value=33 Score=36.15 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=4.8
Q ss_pred hHHHHHHHHHH
Q 026212 75 VLNEAARLLKD 85 (241)
Q Consensus 75 IL~DAI~ylk~ 85 (241)
|+..|-+++.+
T Consensus 498 ii~~A~~~~~~ 508 (771)
T TIGR01069 498 IIEQAKTFYGE 508 (771)
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 264
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=58.09 E-value=50 Score=34.36 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
-..+.++..+++.++.....++.+...+..+...++.+...|+..++.++
T Consensus 439 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~ 488 (1179)
T TIGR02168 439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555444444444455555555555555555555544443
No 265
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=58.00 E-value=16 Score=38.10 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
++|-++|.+|..++.-|+.|....++-|-.|.+.+..|+.|+.++.+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777776666655555555555544444444444433
No 266
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.88 E-value=27 Score=35.23 Aligned_cols=32 Identities=25% Similarity=0.197 Sum_probs=21.4
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 105 HYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 105 ~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+.|+.....+.+.+.....+|..|+.||+--|
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 33444444456666777788888888888754
No 267
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=57.68 E-value=33 Score=35.84 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=5.4
Q ss_pred hhhhhhhHHHHHHHH
Q 026212 115 KEENSSLESQIEVLQ 129 (241)
Q Consensus 115 RdEk~~Lk~e~e~Le 129 (241)
..+...++.++..++
T Consensus 902 ~~~~~~l~~~~~~~~ 916 (1164)
T TIGR02169 902 ERKIEELEAQIEKKR 916 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 268
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=57.24 E-value=12 Score=38.63 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=18.9
Q ss_pred hccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 98 ASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 98 ~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
..|+.+++.|-+|-..||.||..||.+++-|..+
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 3455555555555555666666666665555543
No 269
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=57.21 E-value=90 Score=28.79 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=6.5
Q ss_pred hhhhhhHHHHHHHHH
Q 026212 116 EENSSLESQIEVLQS 130 (241)
Q Consensus 116 dEk~~Lk~e~e~Le~ 130 (241)
+...++..++..+.+
T Consensus 142 e~~~~~e~e~~~i~e 156 (239)
T COG1579 142 EAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 270
>PRK03918 chromosome segregation protein; Provisional
Probab=57.20 E-value=34 Score=35.22 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=11.2
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 107 VTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 107 L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
+..+.+++..+...|+.+++.|+.++.
T Consensus 671 l~~~l~~l~~~~~~l~~~i~~l~~~i~ 697 (880)
T PRK03918 671 LSRELAGLRAELEELEKRREEIKKTLE 697 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444443
No 271
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=56.93 E-value=24 Score=28.69 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSL 121 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~L 121 (241)
+.+|+.++ ..+++.|+.....+.+.+..+..+.+++++....|
T Consensus 92 ~~eA~~~l---~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 92 LDEAIEIL---DKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777774 44455555544444444444444444444443333
No 272
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=56.75 E-value=43 Score=34.14 Aligned_cols=78 Identities=24% Similarity=0.294 Sum_probs=46.0
Q ss_pred HHHhhHhHHHhhhccC-CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 49 REHLNDLFLDLANAVE-VNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 49 RdkLNerF~~L~slL~-P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
+..||+-|..|..+.. |+ ...-|.+||..|=.++..+...-+.|+........++.....+.|. |-.+|..
T Consensus 110 ~~~L~~ff~s~q~la~~P~-~~a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNs-------Ll~qIa~ 181 (552)
T COG1256 110 STLLNDFFNSLQELASNPS-DTAARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNS-------LLKQIAD 181 (552)
T ss_pred HHHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHH
Confidence 4556666666666431 22 2456777888777777777776666666555555555555555444 4445555
Q ss_pred HHHHHHH
Q 026212 128 LQSELRA 134 (241)
Q Consensus 128 Le~qlk~ 134 (241)
|.+|+..
T Consensus 182 lN~qI~~ 188 (552)
T COG1256 182 LNKQIRK 188 (552)
T ss_pred HHHHHHH
Confidence 5555554
No 273
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=56.71 E-value=3.6 Score=33.06 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=1.0
Q ss_pred HHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 92 SLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 92 ~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+|+.+.-.+..++..|..+.+.|+.|...|+.+...|+.+...
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ----------------------------------------HT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444455555555555555666666666666666655544
No 274
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=56.23 E-value=72 Score=26.73 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=44.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhh-----HHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQIESLNKENASLLSESH-----YVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~-----~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.-|.-++.+--.-+.+|..+++.|+-+...+..+.+ .+..-+..+..|++.+...+..|..|++..
T Consensus 16 ~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv 86 (131)
T PF11068_consen 16 KWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666677777777665555555443 444555667778888888888888888875
No 275
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=56.19 E-value=42 Score=35.01 Aligned_cols=50 Identities=26% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+|+.-+-.|++......++++.-.....+|..+...++.++.+|++++..
T Consensus 21 ~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k 70 (732)
T KOG0614|consen 21 ELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDK 70 (732)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 34444444444444444566666677777888888888999999888876
No 276
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=55.99 E-value=83 Score=26.20 Aligned_cols=67 Identities=13% Similarity=-0.012 Sum_probs=47.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 71 GKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 71 DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
+...-...+++....|..++.........|++++...........+....|+..+..++.+++....
T Consensus 17 ~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 17 EDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566777888888888887777777788777766666555666666777777777777776543
No 277
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=55.94 E-value=41 Score=24.73 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=17.3
Q ss_pred hccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 98 ASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 98 ~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
..+..++..++.+..++++|+..|+.|+.+|.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555555555555555555554
No 278
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=55.86 E-value=22 Score=34.73 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=29.8
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhc-cCC--C---CCCCchhhhHHHHHHHHHHHHH-HHHHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANA-VEV--N---QPNNGKACVLNEAARLLKDLFS-QIESLN 94 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~sl-L~P--~---~~K~DKasIL~DAI~ylk~Lr~-~v~~Lk 94 (241)
+|.+.-...|++--||...-...+.++ +.| + +-....-+.+.|+=-|+++++. .|.+++
T Consensus 60 rrpi~~e~~Ek~~~eK~SR~~~~~sa~~~~~l~g~ssRrgsgdts~~iD~EAs~~e~~Dskv~Eve 125 (405)
T KOG2010|consen 60 RRPILDEKSEKQYAEKYSRPSSRNSASATTPLSGNSSRRGSGDTSSLIDPEASLSELRDSKVSEVE 125 (405)
T ss_pred CCcccccchHHHHHHhccCccchhhhhhcccccccccccccCCcccccChHHHHHHHhhhhhHHHH
Confidence 445555666666666665544444332 112 1 1123334556666666666665 444444
No 279
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.85 E-value=48 Score=34.71 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=54.2
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
|.-|.|+..--+.++++-.+.|++.. ....++..+..|..|+.+.++|...|..|+..|++-|
T Consensus 420 k~~~~sk~~le~~~v~~~~~~VQe~~-~Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~ie~~l 482 (758)
T COG4694 420 KQKKSSKEQLEKFLVNEFKSDVQEYN-KYCGLEKKINNLEKEIKNNQEEVKKLSNEIKEIEKFL 482 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 45566888888999999999999998 5667888899999999999999999999999988876
No 280
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=55.85 E-value=17 Score=26.86 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=18.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
.||.+....|++||.+++.++....
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888888777653
No 281
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.80 E-value=30 Score=37.37 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=11.2
Q ss_pred HHHhhHhHHHhhhccCCCC
Q 026212 49 REHLNDLFLDLANAVEVNQ 67 (241)
Q Consensus 49 RdkLNerF~~L~slL~P~~ 67 (241)
-+-||++...|.--|...+
T Consensus 446 letLn~k~qqls~kl~Dvr 464 (1118)
T KOG1029|consen 446 LETLNFKLQQLSGKLQDVR 464 (1118)
T ss_pred HHHHHHHHHHHhhhhhhhe
Confidence 3456777777766553433
No 282
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=55.75 E-value=36 Score=33.06 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHH-------------hhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTI-------------EKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~-------------EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.+-+++|+.++++++.+...+...+..+.. ....++.....|..++..|+.+++..
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666555555555444433 44567777778888888888877754
No 283
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=55.49 E-value=65 Score=23.85 Aligned_cols=47 Identities=26% Similarity=0.260 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
+.....|+..|...+..++.....+..++........+-.-+...++
T Consensus 47 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e 93 (123)
T PF02050_consen 47 LRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLE 93 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544444444444444333333333333
No 284
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=55.38 E-value=12 Score=28.56 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=14.0
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
+..++.+..+|++|+..|+.|+.+|.
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555566666666655554
No 285
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=55.30 E-value=30 Score=31.66 Aligned_cols=38 Identities=34% Similarity=0.526 Sum_probs=28.1
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHH----hhcCCCCCCCC
Q 026212 110 EKNELKEENSSLESQIEVLQSELRARV----VQSKPDLNIPP 147 (241)
Q Consensus 110 EKneLRdEk~~Lk~e~e~Le~qlk~r~----~~~~p~~~~~p 147 (241)
|-..||.|+.+|+.|+|++.++|..-+ ++.+-++|..-
T Consensus 117 EF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEk 158 (220)
T KOG3156|consen 117 EFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEK 158 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhh
Confidence 444499999999999999998887643 34466666654
No 286
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=55.21 E-value=45 Score=33.20 Aligned_cols=87 Identities=28% Similarity=0.234 Sum_probs=47.9
Q ss_pred HHHhhHHHhhHhHHHhhhccCCCCCCCchhhh-HHH--HHHHHHHHHHHHHHHHH-hhh-ccch-----hhhHHHHhhhh
Q 026212 44 REKLKREHLNDLFLDLANAVEVNQPNNGKACV-LNE--AARLLKDLFSQIESLNK-ENA-SLLS-----ESHYVTIEKNE 113 (241)
Q Consensus 44 rER~RRdkLNerF~~L~slL~P~~~K~DKasI-L~D--AI~ylk~Lr~~v~~Lk~-~n~-~L~e-----es~~L~~EKne 113 (241)
.+.+....+.+...-|+..+ ..-++.. -.. |.+.+..-...|+.|+. +.. .+.. |...|+.|+.-
T Consensus 211 ~~l~~~~e~~~~l~l~~~~~-----~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~ 285 (511)
T PF09787_consen 211 EYLRESGELQEQLELLKAEG-----ESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDH 285 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHH
Confidence 44455545544444444433 2222222 222 66666777777777877 333 2332 25667777777
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+++|...|..+|+.|..|++..
T Consensus 286 ~~ee~~~l~~Qi~~l~~e~~d~ 307 (511)
T PF09787_consen 286 LQEEIQLLERQIEQLRAELQDL 307 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776665555443
No 287
>PF12938 M_domain: M domain of GW182
Probab=54.79 E-value=24 Score=32.56 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.|.-+|++|..+|..|+..-..|+..-+....+-..|--+...+|.||..|+.|+-+
T Consensus 147 qtL~LLnQLLq~I~~Lq~~Q~~L~~~~~~~~~~~~q~~~~I~~~kqqI~~lqnQIa~ 203 (235)
T PF12938_consen 147 QTLTLLNQLLQQIKRLQQQQQNLQRQGNASGQEEQQLAVQINKTKQQIQQLQNQIAA 203 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999888888887555554433333445555666778888888888888874
No 288
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=54.76 E-value=37 Score=25.77 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=18.1
Q ss_pred chhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 101 LSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 101 ~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.+|-..++.....+|+....|++.+..||.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555566666666666666666666654
No 289
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=54.66 E-value=52 Score=32.71 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=43.7
Q ss_pred HhhHhHHHhhhccC-CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 51 HLNDLFLDLANAVE-VNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 51 kLNerF~~L~slL~-P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
.||+-|..|..+-. |. ...-+..+|..|-.+...+..-...|+.....+..++...-.+.|.|-++...|-.+|.+
T Consensus 120 ~l~~ff~a~~~la~~P~-~~~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 196 (507)
T PRK07739 120 VLDQFWNSLQELSKNPE-NLGARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAK 196 (507)
T ss_pred HHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444321 22 244567777777777666666666666655556666666666666665555555555543
No 290
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=54.60 E-value=74 Score=34.78 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=5.1
Q ss_pred hhhhhhhHHHHHHH
Q 026212 115 KEENSSLESQIEVL 128 (241)
Q Consensus 115 RdEk~~Lk~e~e~L 128 (241)
+++...++.+++++
T Consensus 897 ~~~~~~~~~~~~~~ 910 (1163)
T COG1196 897 ESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 291
>PHA02047 phage lambda Rz1-like protein
Probab=54.60 E-value=71 Score=26.06 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDLNI 145 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~~~~ 145 (241)
.+++-.-.++++.|..+.+.++..+..+..-.+.|. ..-+.-.++++.-+..+.+|.-.
T Consensus 26 ~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~-------~kae~~t~Ei~~aL~~n~~WaD~ 84 (101)
T PHA02047 26 YRALGIAHEEAKRQTARLEALEVRYATLQRHVQAVE-------ARTNTQRQEVDRALDQNRPWADR 84 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCcccC
Confidence 334333344444444444444444444333333332 23566677777777667777543
No 292
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=54.54 E-value=23 Score=30.26 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhh----ccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENA----SLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~----~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.+|+.++..|++.-. ....|++.|..--..+.+....|+++.|+-++++++.
T Consensus 58 ~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkAd 113 (138)
T PF03954_consen 58 SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKAD 113 (138)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhhh
Confidence 578888888887655 3556788888888888999999999999999999874
No 293
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=54.03 E-value=40 Score=33.69 Aligned_cols=41 Identities=29% Similarity=0.205 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhh
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENS 119 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~ 119 (241)
+-.-|.....++..|......|..++...+.+.+.|++.-.
T Consensus 293 ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 293 AKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444455555555555555554433
No 294
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.81 E-value=64 Score=33.38 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=7.7
Q ss_pred hhhhhHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELR 133 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk 133 (241)
|+..|+.++.+++.++.
T Consensus 340 Er~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELD 356 (581)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 295
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=53.73 E-value=32 Score=34.96 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTI 109 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~ 109 (241)
..+.++..++.+++.+...+++++..++.
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 456 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKE 456 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444333333333333
No 296
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=53.70 E-value=39 Score=32.48 Aligned_cols=54 Identities=28% Similarity=0.300 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhh---HHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESH---YVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~---~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+|++.|..++++|+.+.+.|.+... ..+..+.++.+...++..+|+.++.-++.
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666665554432 23344555666777777777777665554
No 297
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=53.35 E-value=26 Score=27.37 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=26.6
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhh
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELK 115 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLR 115 (241)
..+.+-|.-+--..+..|..+++.|+.....+...+.++..+.++++
T Consensus 51 ~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 51 LVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666655555544444444444333
No 298
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=53.29 E-value=57 Score=23.95 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccch----hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLS----ESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~e----es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
+.+..++..+|+.++.....+...+-- +.=....+...++.+...|+.....|...+.
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888777766655321 1111123333344444444444444444444
No 299
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=53.25 E-value=28 Score=27.19 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
-.+=+.....+-+..|+...+.+..++..+.....++..+-..|+.++.+++
T Consensus 53 G~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 53 GNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred hhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445566666666666666666666666666666666666666665553
No 300
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=53.21 E-value=4.5 Score=37.26 Aligned_cols=41 Identities=32% Similarity=0.363 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
+||.+=.--|.+|+.-|+-|-.+|+. ||.||.+|++|+.+|
T Consensus 122 T~IEEQ~T~I~dLrrlVe~L~aeNEr--------------Lr~EnkqL~ae~arL 162 (243)
T PF08961_consen 122 TRIEEQATKIADLRRLVEFLLAENER--------------LRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 44444444445555555555444443 455555555555555
No 301
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.14 E-value=40 Score=35.32 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhh
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKE 116 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRd 116 (241)
..++|+.++.+|+.+....++++..+..|..+||.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777776666666666666666655554
No 302
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=53.08 E-value=69 Score=25.30 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhh
Q 026212 84 KDLFSQIESLNKEN 97 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n 97 (241)
+.|+.+|+-|....
T Consensus 27 ~~L~eEI~~Lr~qv 40 (86)
T PF12711_consen 27 EALKEEIQLLREQV 40 (86)
T ss_pred HHHHHHHHHHHHHH
Confidence 55556665555433
No 303
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=53.05 E-value=38 Score=31.86 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchh
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSE 103 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ee 103 (241)
.+-..|.+.+.++.+++.....|+.+
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~ 257 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKE 257 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444443333333333
No 304
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=53.03 E-value=25 Score=27.91 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhh
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSL 121 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~L 121 (241)
.-..+|.+|..++..|..++..|+.+.+--|.|+..|
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555445554443
No 305
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=52.87 E-value=32 Score=32.44 Aligned_cols=50 Identities=24% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDL 86 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~---~K~DKasIL~DAI~ylk~L 86 (241)
.|+..-+.|||+|=-.||.-|-.|+.++ |+. .|..|---|--|-.||--|
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~-p~~~~d~~LSkyetLqmaq~yi~~l 225 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVV-PDGDSDKKLSKYETLQMAQGYILAL 225 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhc-CCCCccchhhhhhHHHHHHHHHhhh
Confidence 4667778999999999999999999988 865 3555555555555554433
No 306
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.53 E-value=1.2e+02 Score=30.03 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=19.0
Q ss_pred HHhhhccchhhhHHHHhhh-hhhhhhhhhHHHHHHHH
Q 026212 94 NKENASLLSESHYVTIEKN-ELKEENSSLESQIEVLQ 129 (241)
Q Consensus 94 k~~n~~L~ees~~L~~EKn-eLRdEk~~Lk~e~e~Le 129 (241)
|.+....+++..|..-|+. ++.|-....++-|.+||
T Consensus 282 KqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 282 KQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333334444444444442 24444556777888888
No 307
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=52.46 E-value=37 Score=29.90 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=28.3
Q ss_pred HHhhHHHhhHhHHHhhhccCCCCCCCchhhh-----HHHHHHHHHHHHH
Q 026212 45 EKLKREHLNDLFLDLANAVEVNQPNNGKACV-----LNEAARLLKDLFS 88 (241)
Q Consensus 45 ER~RRdkLNerF~~L~slL~P~~~K~DKasI-----L~DAI~ylk~Lr~ 88 (241)
|+.|-.+||+.|.-||+++ |+.+-..|+.| -+|-|+.+.+|+.
T Consensus 30 e~~R~~~ls~~s~l~g~l~-pgspa~gk~~~ktlr~~~~~~~~~dE~q~ 77 (173)
T KOG4447|consen 30 ERGRKRRLSDASTLLGKLE-PGSPADGKRGKKTLRIGTDSIQSLDELQK 77 (173)
T ss_pred HHhHHhhhhhhhhhccccC-CCCCCcccccccccccCCCchhhHHHHHH
Confidence 6777778999999999975 88743333333 3455555554444
No 308
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.25 E-value=39 Score=28.86 Aligned_cols=30 Identities=33% Similarity=0.418 Sum_probs=16.9
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 105 HYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 105 ~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++|..+|.+|..+...|+.|.+++..++.+
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555544
No 309
>PRK14153 heat shock protein GrpE; Provisional
Probab=52.10 E-value=29 Score=30.89 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=18.6
Q ss_pred ccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 99 SLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 99 ~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
.+..++..|+.+..+|+|...++.+|.+++...
T Consensus 37 ~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR 69 (194)
T PRK14153 37 TADSETEKCREEIESLKEQLFRLAAEFDNFRKR 69 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666666666666665555443
No 310
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=52.07 E-value=65 Score=28.31 Aligned_cols=80 Identities=13% Similarity=0.209 Sum_probs=44.7
Q ss_pred hHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 48 KREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 48 RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
+-.=+|..|..+..+..- .-.|+.. +.+.+..|.++..++.+|+.++..|.+.+-.. .++.+..-.++.++..
T Consensus 81 ~K~Pf~~~~k~~~~ifke--gg~d~~k-~~~~l~~L~e~snki~kLe~~~k~L~d~Iv~~----~~i~e~IKd~de~L~~ 153 (163)
T PF03233_consen 81 SKSPFESFFKDLSKIFKE--GGGDKQK-QLKLLPTLEEISNKIRKLETEVKKLKDNIVTE----KLIEELIKDFDERLKE 153 (163)
T ss_pred CCCcHHHHHHHHHHHHHh--cCCchhh-HHHHHHHHHHHHHHHHHHHHHHHhHhhhcccc----HHHHHHHHHHHHHHHH
Confidence 333456666667776521 2334433 33477777777777777777776666543221 2344555555666666
Q ss_pred HHHHHHH
Q 026212 128 LQSELRA 134 (241)
Q Consensus 128 Le~qlk~ 134 (241)
++..++.
T Consensus 154 I~d~iK~ 160 (163)
T PF03233_consen 154 IRDKIKK 160 (163)
T ss_pred HHHHHHh
Confidence 6666654
No 311
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=51.96 E-value=45 Score=25.17 Aligned_cols=20 Identities=20% Similarity=0.479 Sum_probs=15.6
Q ss_pred hhhhhhhhhHHHHHHHHHHH
Q 026212 113 ELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 113 eLRdEk~~Lk~e~e~Le~ql 132 (241)
.++..|..||-++.+||.|+
T Consensus 42 RmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 42 RMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHhHHHHHHHHHHhh
Confidence 36667788888888888876
No 312
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=51.58 E-value=9.7 Score=28.29 Aligned_cols=9 Identities=56% Similarity=0.748 Sum_probs=3.7
Q ss_pred hhhhhhhhH
Q 026212 114 LKEENSSLE 122 (241)
Q Consensus 114 LRdEk~~Lk 122 (241)
|..||..||
T Consensus 33 Le~EN~~Lk 41 (59)
T PF01166_consen 33 LEEENNLLK 41 (59)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 313
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=51.49 E-value=30 Score=32.28 Aligned_cols=65 Identities=25% Similarity=0.255 Sum_probs=38.6
Q ss_pred CCchhhhHHHHHHHH-HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 69 NNGKACVLNEAARLL-KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 69 K~DKasIL~DAI~yl-k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
-..|-.||+.++.-. .-....+-..--.|..++.++..-+.+.++|.++...|++|++.|..+.+
T Consensus 159 q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 159 QEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556677554433 33444444444556666666666666666677777777777777766655
No 314
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=51.38 E-value=3.8 Score=31.64 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=14.1
Q ss_pred HHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 91 ESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 91 ~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
..|+.++..|..++..|..|..+++.|...++...
T Consensus 54 ~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~ 88 (92)
T PF03131_consen 54 EELEEEIEQLRQEIEQLQQELSELRQERDELKRKL 88 (92)
T ss_dssp HHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333
No 315
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=51.17 E-value=1.4e+02 Score=28.03 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=0.0
Q ss_pred HhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhh------hhh
Q 026212 46 KLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKE------ENS 119 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRd------Ek~ 119 (241)
|.||++|-+.+..|... +|...| |..|+.++-.++.++...+.++..++.++ +++ .-.
T Consensus 144 R~~r~~l~d~I~kLk~k-~P~s~k-------------l~~LeqELvraEae~lvaEAqL~n~kR~~--lKEa~~~~f~Al 207 (271)
T PF13805_consen 144 RDRRRKLQDEIAKLKYK-DPQSPK-------------LVVLEQELVRAEAENLVAEAQLSNIKRQK--LKEAYSLKFDAL 207 (271)
T ss_dssp HHHHHHHHHHHHHHHHH--TTTTT-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhc-CCCChH-------------HHHHHHHHHHHHHHhhHHHHHHHHhhHHH--HHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 026212 120 SLESQIEVLQSELRARVVQSKPDLNIPPE 148 (241)
Q Consensus 120 ~Lk~e~e~Le~qlk~r~~~~~p~~~~~p~ 148 (241)
.-.+||.-|=.++-.++-...|+-.+.|+
T Consensus 208 ~E~aEK~~Ila~~gk~Ll~lldd~pv~PG 236 (271)
T PF13805_consen 208 IERAEKQAILAEYGKRLLELLDDTPVVPG 236 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS------TT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCC
No 316
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=51.13 E-value=26 Score=35.90 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhh
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEE 117 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdE 117 (241)
+|..==-+||+++-.+|+.||..|+.+..+++++..|....+++
T Consensus 363 sI~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 363 SINKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445566666666666666666666655555555444444
No 317
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=51.11 E-value=50 Score=25.68 Aligned_cols=52 Identities=19% Similarity=0.088 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.|+.-++|..++..-+++++.|..-+..|..+....-+-+..|+.+...++.
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667776666666666666655566655555555556666666555554
No 318
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.08 E-value=70 Score=34.76 Aligned_cols=52 Identities=29% Similarity=0.335 Sum_probs=36.7
Q ss_pred hhhHHHHHH----HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHH
Q 026212 73 ACVLNEAAR----LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQ 124 (241)
Q Consensus 73 asIL~DAI~----ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e 124 (241)
.+-|..+.+ +.+.|+.++.+|..+.+.-.+++..+...+.|||++...+...
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~la 585 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLA 585 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 445544432 3466788889999888887778888888888888876654433
No 319
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=51.01 E-value=26 Score=30.61 Aligned_cols=15 Identities=33% Similarity=0.195 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQI 90 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v 90 (241)
|..||+.--=|+.++
T Consensus 9 lN~AIERnalLE~EL 23 (166)
T PF04880_consen 9 LNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH
Confidence 556666666666666
No 320
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=50.98 E-value=54 Score=32.35 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=46.5
Q ss_pred HhhHhHHHhhhcc-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 51 HLNDLFLDLANAV-EVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 51 kLNerF~~L~slL-~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
.||+-|..|..+- .|. ...-+..+|..|-.+...+..-...|+.....+.+++...-.+.|.+-++...|-.+|-.
T Consensus 103 ~l~~ff~a~~~la~~P~-~~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 179 (483)
T PRK07521 103 RLSDFQAALQTAASSPD-NTTLAQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVS 179 (483)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555542 122 234467888888777777777777776666666666666666666666655555555543
No 321
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=50.77 E-value=37 Score=26.33 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=21.5
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 106 YVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 106 ~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+-..-.+|-.|.+.|+.||.+||+++-.
T Consensus 51 ~lp~~~keLL~EIA~lE~eV~~LE~~v~~ 79 (88)
T PF14389_consen 51 SLPKKAKELLEEIALLEAEVAKLEQKVLS 79 (88)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445567788888888888888888764
No 322
>PRK14160 heat shock protein GrpE; Provisional
Probab=50.73 E-value=32 Score=31.08 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=9.6
Q ss_pred HHHhhhhhhhhhhhhHHHHHHH
Q 026212 107 VTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 107 L~~EKneLRdEk~~Lk~e~e~L 128 (241)
|..+..+++|...++.+|.++.
T Consensus 73 l~~e~~elkd~~lR~~AefeN~ 94 (211)
T PRK14160 73 LENELEALKDRLLRTVAEYDNY 94 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443
No 323
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=50.53 E-value=1.1e+02 Score=31.06 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhhcc----chhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASL----LSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L----~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.+|.-|+++|+.|+.....- +++.-.+.+|+...|+||.+|. .+|.+++..|
T Consensus 253 ~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQ---rkL~~e~erR 308 (552)
T KOG2129|consen 253 LHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQ---RKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHH
Confidence 45666899999999877653 3455566678888888888765 3455555554
No 324
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=50.34 E-value=34 Score=26.57 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSE 103 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ee 103 (241)
+.+|++++ ..+++.|+...+.+..+
T Consensus 75 ~~eA~~~l---~~r~~~l~~~~~~l~~~ 99 (120)
T PF02996_consen 75 LEEAIEFL---KKRIKELEEQLEKLEKE 99 (120)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 67788774 34444444433333333
No 325
>PRK14127 cell division protein GpsB; Provisional
Probab=50.28 E-value=30 Score=28.31 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTI 109 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~ 109 (241)
|.+-|.-+..|..++.+|+.++..|.+++.++..
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444443333
No 326
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.27 E-value=35 Score=37.55 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
|.++...+.+|..++.+|+.....|.++-..++.+-.+.-.++..|+-++..|++|+.
T Consensus 260 ~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 260 LDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQIT 317 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Confidence 3444444444444444444444444443333333333333334444444555555443
No 327
>PRK11415 hypothetical protein; Provisional
Probab=50.03 E-value=30 Score=26.02 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhh-hhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKN-ELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKn-eLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
|.|.-|+.=-.+..+|.++...|..+|..+..... ---++...||.++-.|..++...+.
T Consensus 7 d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L~ 67 (74)
T PRK11415 7 DLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQ 67 (74)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44555554445555566666666666665544322 1245677888888888888877764
No 328
>PRK13694 hypothetical protein; Provisional
Probab=50.00 E-value=35 Score=26.92 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhh
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEK 111 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK 111 (241)
.+-+-|..-|++.-++|+.|+++...+.+.++++-.|-
T Consensus 5 ~~~~va~~~Lr~fIERIERLEeEkk~i~~dikdVyaEA 42 (83)
T PRK13694 5 DAEVVAKEQLRAFIERIERLEEEKKTISDDIKDVYAEA 42 (83)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888999999999999999999998888876664
No 329
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.95 E-value=42 Score=35.48 Aligned_cols=78 Identities=28% Similarity=0.337 Sum_probs=49.1
Q ss_pred hHHHhhHhHHHhhhccCCCCCCCchhhh------HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHH-------Hhhhhh
Q 026212 48 KREHLNDLFLDLANAVEVNQPNNGKACV------LNEAARLLKDLFSQIESLNKENASLLSESHYVT-------IEKNEL 114 (241)
Q Consensus 48 RRdkLNerF~~L~slL~P~~~K~DKasI------L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~-------~EKneL 114 (241)
|...++.++.+|-+=| |.-|..+ ...-...+.+|+..++.|+.+...|.++++++| ++-+||
T Consensus 28 ~E~~~~~~i~~l~~el-----k~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dysel 102 (717)
T PF09730_consen 28 KEAYLQQRILELENEL-----KQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSEL 102 (717)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4566777777776644 2222211 222334456666777777777777777776654 566788
Q ss_pred hhhhhhhHHHHHHHHH
Q 026212 115 KEENSSLESQIEVLQS 130 (241)
Q Consensus 115 RdEk~~Lk~e~e~Le~ 130 (241)
.+||..|..++..|.+
T Consensus 103 EeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 103 EEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888754
No 330
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=49.76 E-value=54 Score=29.48 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhh--hhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEK--NELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EK--neLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
|.++++.|.........|+++|..-. -|+.++.+.|+.+.-.....|+..
T Consensus 91 l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 91 LTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444544443322 245556666666665555555544
No 331
>PRK04654 sec-independent translocase; Provisional
Probab=49.58 E-value=82 Score=28.80 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++|+++|+.+...+.+..... +..+|+.+.++++++...++.++..-.++++.
T Consensus 34 k~irk~R~~~~~vk~El~~El-~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q 86 (214)
T PRK04654 34 LWVRRARMQWDSVKQELEREL-EAEELKRSLQDVQASLREAEDQLRNTQQQVEQ 86 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655443321 23344444444444444444455455555544
No 332
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=49.55 E-value=52 Score=34.32 Aligned_cols=59 Identities=25% Similarity=0.260 Sum_probs=38.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
-.-+..+|+.|-.++.++..--..|......+..++...-.+.|.|-++...|-.+|.+
T Consensus 126 ~aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~ 184 (676)
T PRK05683 126 TAARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQ 184 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888777777777777776666666666666666666666655555555543
No 333
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=49.45 E-value=50 Score=32.23 Aligned_cols=57 Identities=25% Similarity=0.246 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhh----------hhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKN----------ELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKn----------eLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+..|.+|-.+-.+|..+.+.|+.+.+.+..+.. +|.++...|+.++..|+.+++.-.
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 93 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELE 93 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666555544332 244455566666666666666543
No 334
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=49.30 E-value=48 Score=25.77 Aligned_cols=50 Identities=20% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+|-.+..+|+.....-++|+..|+.-...||.+....-.--.+|+.+...
T Consensus 2 ~Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~ 51 (76)
T PF11544_consen 2 ELIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLN 51 (76)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666776666667777777777777777777666666666666654
No 335
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=49.24 E-value=65 Score=33.07 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=38.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
-.-+..+|..|-.+...+..-...|......+..++...-.+.|.|-++...|-.+|.+
T Consensus 138 ~a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 138 LAERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888777777776666666665556666666666666666655555555543
No 336
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=49.21 E-value=64 Score=31.60 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=38.4
Q ss_pred hhHhHHHhhhccC-CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 52 LNDLFLDLANAVE-VNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 52 LNerF~~L~slL~-P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
||+-|..|..+-. |. ...-+..+|..|-.+...+..-...|......+..++...-.+.|.|-++...|-.+|
T Consensus 109 l~~ff~a~~~la~~P~-~~~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I 182 (456)
T PRK07191 109 LNNFFSALSAATQLPD-SPPMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKI 182 (456)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554321 11 2344667777776666666655555555444455555555555555544444444444
No 337
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=49.21 E-value=2.9 Score=32.29 Aligned_cols=10 Identities=20% Similarity=-0.004 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 026212 80 ARLLKDLFSQ 89 (241)
Q Consensus 80 I~ylk~Lr~~ 89 (241)
+..||+.|..
T Consensus 26 ~~~lK~~RRr 35 (92)
T PF03131_consen 26 IAELKQRRRR 35 (92)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 338
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=49.20 E-value=1.1e+02 Score=26.79 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
+..+..+|..++.++++|+..+....+++..++.|..++.+.....+.+-+.+...++
T Consensus 117 ~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k 174 (216)
T cd07627 117 WQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIK 174 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555433223345555555655555555555555544444333
No 339
>PRK15396 murein lipoprotein; Provisional
Probab=49.15 E-value=46 Score=25.75 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 89 QIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 89 ~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
++++|..+...|..++..+..+.+.+|..-..-+.|-.+-.+.|...
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555556666666776666777777777666654
No 340
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.05 E-value=56 Score=35.49 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=7.6
Q ss_pred HHhhHhHHHhhhcc
Q 026212 50 EHLNDLFLDLANAV 63 (241)
Q Consensus 50 dkLNerF~~L~slL 63 (241)
|-+|+-|.-|.+.+
T Consensus 382 Dd~~~~f~lL~n~v 395 (1102)
T KOG1924|consen 382 DDANEVFELLANTV 395 (1102)
T ss_pred ccHHHHHHHHHHhh
Confidence 44555555555554
No 341
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=49.05 E-value=31 Score=32.85 Aligned_cols=43 Identities=26% Similarity=0.213 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
..++++|+.+++.|+..+..|..+.+.++.+..++++++..|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677888888888888888766666666555555554444
No 342
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=49.03 E-value=1.1e+02 Score=29.75 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 111 KNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 111 KneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
..++.+|...|+.++++++.+|+..+
T Consensus 77 ~~~a~~e~~~l~~~~~~~e~~l~~~l 102 (360)
T TIGR00019 77 REMAKEELEELEEKIEELEEQLKVLL 102 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567888899999999999988754
No 343
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=48.82 E-value=46 Score=24.61 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=8.4
Q ss_pred hhhhhhHHHHHHHHHHH
Q 026212 116 EENSSLESQIEVLQSEL 132 (241)
Q Consensus 116 dEk~~Lk~e~e~Le~ql 132 (241)
..|..|..+|++|+.++
T Consensus 39 ~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 39 KRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555544
No 344
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.66 E-value=1.1e+02 Score=30.72 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..++...-+.+|..+++.++.+...+.+.+..|..+-.+.++....++..+..+...+..
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k 436 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEK 436 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777778888888888888888787777777777777777777777777766666655
No 345
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=48.66 E-value=88 Score=25.67 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESL 93 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~L 93 (241)
.+|-.+|-.|+..+.++
T Consensus 6 ~EA~~lLP~l~~~~~~~ 22 (120)
T PF09969_consen 6 EEANALLPLLRPILEEI 22 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 346
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=48.62 E-value=52 Score=24.21 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.++++++.+++.....+.+++.. |......++.++.++..++..
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~-------lE~~~~~~e~~i~~~~~~l~~ 45 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDK-------LEKRDAANEKDIKNLNKQLEK 45 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34555566555544444433333 333344444445555555543
No 347
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=48.32 E-value=18 Score=33.73 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=13.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 110 EKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 110 EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
...+++.|...++.|+++++.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (364)
T TIGR01242 14 EKRSLEKEKIRLERELERLRSEIER 38 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444566666666666655
No 348
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=48.32 E-value=29 Score=34.68 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNK 95 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~ 95 (241)
.||++... +.+|+.+.+++..
T Consensus 148 ~lLD~~~~-~~~~~~~~~~~~~ 168 (563)
T TIGR00634 148 QLLDTFAG-ANEKVKAYRELYQ 168 (563)
T ss_pred HHHHHhcC-chHHHHHHHHHHH
Confidence 33444333 3344444444433
No 349
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=48.26 E-value=18 Score=33.64 Aligned_cols=33 Identities=30% Similarity=0.271 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhh
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEEN 118 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk 118 (241)
|+.+++.|++.+..++.+.+.++.|..+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEI 36 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444444444444444433
No 350
>PRK15396 murein lipoprotein; Provisional
Probab=48.25 E-value=58 Score=25.19 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
=|.+|..+|+.|....+.+...+..+......-.+|-.+--..|+++-
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888888877766666666555554444443
No 351
>PLN02678 seryl-tRNA synthetase
Probab=47.94 E-value=55 Score=32.56 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHH---HhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVT---IEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~---~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
.++|..+++.|+.+...+..+++.++ .+..+|.++-..|+.+|..|+.+++..-.
T Consensus 42 ~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~ 99 (448)
T PLN02678 42 WRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKA 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666665543 23446777778888888888888877543
No 352
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=47.84 E-value=84 Score=28.85 Aligned_cols=54 Identities=24% Similarity=0.229 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhh-------hhhhhhHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELK-------EENSSLESQIEVLQSELRA 134 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLR-------dEk~~Lk~e~e~Le~qlk~ 134 (241)
+-|-+|+.++++.+.+.+.+..|.+.-+.+|.+|+ ++.-+++.+|.+|+.-+.+
T Consensus 46 ~dve~l~~e~E~~~k~l~de~~E~r~~~~tke~lk~l~~~~~~~f~a~~edi~rlE~~i~~ 106 (231)
T COG5493 46 QDVEELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQEEEFRATKEDIKRLETIITG 106 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888887777665556666666666666 5677888888888855544
No 353
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.60 E-value=41 Score=24.78 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
|.+|+.++.-++...+.|.+.+-....+...|+.....|...+..++
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444444444444443
No 354
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=47.58 E-value=47 Score=33.58 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQ 124 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e 124 (241)
++++.+.++.....++.+++.+..|++++||++..|...
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444445556666666666666665554433
No 355
>PRK11546 zraP zinc resistance protein; Provisional
Probab=47.36 E-value=83 Score=26.94 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=7.1
Q ss_pred hhhHHHHhhhhhhh
Q 026212 103 ESHYVTIEKNELKE 116 (241)
Q Consensus 103 es~~L~~EKneLRd 116 (241)
.|+.|..|..+||+
T Consensus 90 kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 90 KINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555555554
No 356
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=47.25 E-value=89 Score=35.20 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLL 101 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ 101 (241)
+.++-...++|++.+++|+.+...|+
T Consensus 460 ~~~~~~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 460 VAELEEMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555566677766666655444443
No 357
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=46.68 E-value=1.1e+02 Score=22.21 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=13.8
Q ss_pred hhHHHHhhhhhh-hhhhhhHHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELK-EENSSLESQIEVLQSELRA 134 (241)
Q Consensus 104 s~~L~~EKneLR-dEk~~Lk~e~e~Le~qlk~ 134 (241)
++.+..|.+.+- .++..++..+.....++..
T Consensus 41 l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~ 72 (79)
T PF05008_consen 41 LKQMELEVRSLPPSERNQYKSKLRSYRSELKK 72 (79)
T ss_dssp HHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 334444444442 3444555555555444443
No 358
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=46.60 E-value=72 Score=25.99 Aligned_cols=49 Identities=22% Similarity=0.242 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 87 FSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 87 r~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+.....|++....-...++.+.+|..-|.=.|..|-..++.|+.++...
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555556677788888888889999999999999999853
No 359
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=46.29 E-value=1.2e+02 Score=26.67 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhh-hhhhhhhhHHHHHHHHHHHHHHHhhcCCCCCC
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNE-LKEENSSLESQIEVLQSELRARVVQSKPDLNI 145 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKne-LRdEk~~Lk~e~e~Le~qlk~r~~~~~p~~~~ 145 (241)
+++++-.-|.+|..+++.|+...+.+..++.-++.+-.+ ++-+...|..++.+|...+.+......+....
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~l~g~ 144 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRELYGV 144 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC
Confidence 578888888888888888887777666665555433222 33356667777777777776655444444333
No 360
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=46.17 E-value=42 Score=32.01 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcC
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSK 140 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~ 140 (241)
+|.+|.-+.++ ...|.++.++|..+|..|..++...+..+..|..+|+..+....
T Consensus 92 ml~RL~~EL~~----Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~ 146 (355)
T PF09766_consen 92 MLARLEFELEQ----RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAK 146 (355)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555444433 34577788899999999999999999999999999999876553
No 361
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=46.07 E-value=74 Score=32.36 Aligned_cols=35 Identities=31% Similarity=0.324 Sum_probs=21.8
Q ss_pred hhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 96 ENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 96 ~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
....+.+++..+..++++|++|..+|+.+++.|+-
T Consensus 94 ~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 94 ELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444555666666666777777777777766653
No 362
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=45.93 E-value=18 Score=27.84 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=7.4
Q ss_pred HhhhhhhhhhhhhHHHHH
Q 026212 109 IEKNELKEENSSLESQIE 126 (241)
Q Consensus 109 ~EKneLRdEk~~Lk~e~e 126 (241)
.++..+++++..++.++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 84 DELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 363
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=45.88 E-value=25 Score=31.74 Aligned_cols=32 Identities=38% Similarity=0.362 Sum_probs=19.2
Q ss_pred HhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 95 KENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 95 ~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
.+|+.|..++..+..|.+.|++|+..|+.-.+
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae 156 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAE 156 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555655666666666666666666665433
No 364
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=45.87 E-value=53 Score=25.02 Aligned_cols=32 Identities=28% Similarity=0.209 Sum_probs=14.5
Q ss_pred HHHHhhhccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 92 SLNKENASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 92 ~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
.+..+...++.+...|..|.+.|+=|.+.|.+
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33333344444444444444445555555543
No 365
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.86 E-value=58 Score=25.70 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=35.2
Q ss_pred HHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 56 FLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 56 F~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
..+|..+ +++. --.+.+-|..|--+.+.+|..+++.++.....|. .....|..++.+++.+|
T Consensus 40 ~~eL~~l-~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~le--------------k~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 40 LEELERL-PDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQ--------------RQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHcC-CCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 3445553 3443 2345556666666666677777666654444433 33444555556666666
Q ss_pred HHH
Q 026212 133 RAR 135 (241)
Q Consensus 133 k~r 135 (241)
+.+
T Consensus 105 ~~~ 107 (110)
T TIGR02338 105 QEA 107 (110)
T ss_pred HHH
Confidence 654
No 366
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.31 E-value=1.1e+02 Score=23.59 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.+|.+++.+|+...+-=..-|.+|..-.-|.+-...++..+..-|-+.|+.+
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888877665444566666666666666666666666666666653
No 367
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.17 E-value=38 Score=26.76 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=21.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHh
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIE 110 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~E 110 (241)
+.|+..++.+--.-+..+...++.|+.....|+.++.++...
T Consensus 62 ~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 62 KTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555554444433
No 368
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=45.08 E-value=77 Score=31.64 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=36.1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
..-+..+|..|-.+...+..-...|......+.++++..-.+.|.|-++...|-.+|-
T Consensus 127 ~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~ 184 (547)
T PRK08147 127 PAARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQIT 184 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447778888877777777666666665555555666665565555555555555443
No 369
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=45.00 E-value=34 Score=26.76 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHY 106 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~ 106 (241)
..+.+|..++++++.+|..|.+++..
T Consensus 80 ~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 80 KEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544433
No 370
>PRK02119 hypothetical protein; Provisional
Probab=44.80 E-value=78 Score=23.82 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=24.3
Q ss_pred HHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 91 ESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 91 ~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..++.....|+.++-....-..+|-+.......+|++|+.+|+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~ 48 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRY 48 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555554
No 371
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.80 E-value=1.2e+02 Score=22.77 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=17.5
Q ss_pred hccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 98 ASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 98 ~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
..|...+.++.....+|......+..+++.|+..+.
T Consensus 36 KKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444455555555555555555544
No 372
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=44.50 E-value=34 Score=24.30 Aligned_cols=87 Identities=10% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhh----hhhhH
Q 026212 47 LKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEE----NSSLE 122 (241)
Q Consensus 47 ~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdE----k~~Lk 122 (241)
.+...+...+.+|...|.-.........+ +..+.-+..+..+.+.++.+.......+..+...-..|.+. ...++
T Consensus 1 ~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~-~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~ 79 (105)
T PF00435_consen 1 KQLQQFQQEADELLDWLQETEAKLSSSEP-GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQ 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCTH-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Q ss_pred HHHHHHHHHHHH
Q 026212 123 SQIEVLQSELRA 134 (241)
Q Consensus 123 ~e~e~Le~qlk~ 134 (241)
..++.|+..+..
T Consensus 80 ~~~~~l~~~w~~ 91 (105)
T PF00435_consen 80 EKLEELNQRWEA 91 (105)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 373
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=44.47 E-value=1.1e+02 Score=31.59 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=49.2
Q ss_pred HhhHhHHHhhhccCCCCCCCchhhh-----------HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhh
Q 026212 51 HLNDLFLDLANAVEVNQPNNGKACV-----------LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENS 119 (241)
Q Consensus 51 kLNerF~~L~slL~P~~~K~DKasI-----------L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~ 119 (241)
-+|.....+...| .+|++-.+. |+|+-.-++.++-++++|..-...-...-++++.|-.||.|...
T Consensus 209 dtN~q~~s~~eel---~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA 285 (596)
T KOG4360|consen 209 DTNTQARSGQEEL---QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA 285 (596)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3566666555544 234444333 34444444444444444443333333344788889999999999
Q ss_pred hhHHHHHHHHHHHHH
Q 026212 120 SLESQIEVLQSELRA 134 (241)
Q Consensus 120 ~Lk~e~e~Le~qlk~ 134 (241)
.+-.....-|.+|+.
T Consensus 286 E~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 286 ECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHHHHHHHHHHh
Confidence 998888888888887
No 374
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=44.21 E-value=13 Score=27.67 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=15.3
Q ss_pred chhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 101 LSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 101 ~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
.+|+..|+....+|.+.+..|+.|-.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENN 38 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666665543
No 375
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.03 E-value=85 Score=30.91 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=9.7
Q ss_pred hHHHhhHhHHHhhhcc
Q 026212 48 KREHLNDLFLDLANAV 63 (241)
Q Consensus 48 RRdkLNerF~~L~slL 63 (241)
.-..|-+.+..|..-+
T Consensus 227 ~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 227 SQSRLEESIEKLKEQY 242 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456667777776643
No 376
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=43.97 E-value=28 Score=26.75 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=19.3
Q ss_pred chhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 101 LSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 101 ~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
..++..|..+..+|+++...+..++.-++.+++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666666666666665554
No 377
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=43.95 E-value=32 Score=27.59 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=48.9
Q ss_pred HHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 49 REHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 49 RdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
+++++.=..+|.+-| ...|-.+|..=+.+-..++..+..|..++++.......|..+...||.-++.+
T Consensus 17 ~~~ie~ElEeLTasL------------FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~ 84 (100)
T PF06428_consen 17 KEQIESELEELTASL------------FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESM 84 (100)
T ss_dssp HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT-
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445666666666655 78888888888888888888888777777777766666777777776666555
Q ss_pred HHHH
Q 026212 129 QSEL 132 (241)
Q Consensus 129 e~ql 132 (241)
..+-
T Consensus 85 ~~~~ 88 (100)
T PF06428_consen 85 ESES 88 (100)
T ss_dssp ----
T ss_pred cccc
Confidence 4443
No 378
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=43.94 E-value=1.1e+02 Score=27.58 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+.+-..+|..|+.+|+.|++....+-+..+.-......+..+...||.+|-.|+..+...+
T Consensus 74 iarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 74 IANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888888888888666554333321111222344555555666666665555544
No 379
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=43.75 E-value=77 Score=29.80 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=10.0
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
++..|+.+..+...++..|+.+++..+
T Consensus 250 ~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 250 KLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 380
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.65 E-value=62 Score=30.89 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 026212 73 ACVLNEAARLLKDLFSQIESLNKENAS 99 (241)
Q Consensus 73 asIL~DAI~ylk~Lr~~v~~Lk~~n~~ 99 (241)
.++=+.|..-|.+|+.++++|+.++..
T Consensus 10 eGL~~~aLqKIqelE~QldkLkKE~qQ 36 (307)
T PF10481_consen 10 EGLPTRALQKIQELEQQLDKLKKERQQ 36 (307)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777888888888888876643
No 381
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.56 E-value=1e+02 Score=24.70 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=66.7
Q ss_pred CccchhhHHHhhHHHhhHhHHHhhhccCCC----CCCCchhhhHHH-HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhh
Q 026212 37 KRVHKAEREKLKREHLNDLFLDLANAVEVN----QPNNGKACVLNE-AARLLKDLFSQIESLNKENASLLSESHYVTIEK 111 (241)
Q Consensus 37 rk~~Ka~rER~RRdkLNerF~~L~slL~P~----~~K~DKasIL~D-AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK 111 (241)
|+++--.-+|..|+ -=|..|-..+... ....+...+... .+.+++=++=-++=|-.+.+.|...+..++.+.
T Consensus 13 r~i~~iDvd~i~~~---~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~ 89 (118)
T PF13815_consen 13 RLISAIDVDRIVRE---LDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERL 89 (118)
T ss_pred HHHhccCHHHHHhc---cCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677888884 3344444444221 122222222322 346777788888888888888999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
..+..+..+|+....++..+++..
T Consensus 90 ~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 90 QELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888874
No 382
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=43.27 E-value=38 Score=32.52 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
|..+++++++....++.++..+.....++..++..|+..+..|++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444333333333334443433333
No 383
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=43.07 E-value=1e+02 Score=28.80 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhH-------HHHHHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLE-------SQIEVLQSELRA 134 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk-------~e~e~Le~qlk~ 134 (241)
..+..-|.+++.++..|..+...|..+|.--+.|....+.....|+ .|-|+||.+|+.
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 3344445555555666666556666666555555444444444443 355666666654
No 384
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=43.00 E-value=1.1e+02 Score=28.67 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=35.5
Q ss_pred HhhHhHHHhhhccCCCCC-CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchh----hhHHHHhhhhhhhhhhhhHHHH
Q 026212 51 HLNDLFLDLANAVEVNQP-NNGKACVLNEAARLLKDLFSQIESLNKENASLLSE----SHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 51 kLNerF~~L~slL~P~~~-K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ee----s~~L~~EKneLRdEk~~Lk~e~ 125 (241)
.|++.-..+.. ++|+.- ...|.++|+- ++..+...++++-....++... +..|..-+.+|+..+..|....
T Consensus 50 ~L~~L~~~~~~-~dp~~~~~~~~~~~l~k---lf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~ 125 (333)
T PF05816_consen 50 LLNELRKEMDE-LDPSELKDEKKKGFLGK---LFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLY 125 (333)
T ss_pred HHHHHHHHHHh-CChhhhhhhhhhhHHHH---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 367652 3445677776 3333333333333333332222 2344444555555555555544
Q ss_pred HHHHH
Q 026212 126 EVLQS 130 (241)
Q Consensus 126 e~Le~ 130 (241)
+.+..
T Consensus 126 ~~n~~ 130 (333)
T PF05816_consen 126 EKNWE 130 (333)
T ss_pred HHHHH
Confidence 44433
No 385
>PF10351 Apt1: Golgi-body localisation protein domain; InterPro: IPR019443 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This domain is found in fungi, metazoans and plants. These include FMP27 and "maize" protein APT1 and Arabidopsis homologues SABRE and KIP. APT1 is required for pollen tube growth. It is a Golgi-localised protein and appears to regulate vesicular trafficking []. SABRE and KIP are APT1 homologues and they are involved in the elongation of root cortex cells and pollen tubes respectively.
Probab=42.73 E-value=1.4e+02 Score=28.95 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYV 107 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L 107 (241)
|.+....|..|+.++..|..-...++.....|
T Consensus 92 l~~~~~~V~~LQ~~ir~l~~~~~~~~~~~~~L 123 (457)
T PF10351_consen 92 LEGLDDRVVSLQNRIRQLIEIERELEFRDKLL 123 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555777777777777776665555444443
No 386
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=42.62 E-value=1.3e+02 Score=21.93 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=22.8
Q ss_pred HHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHH
Q 026212 49 REHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDL 86 (241)
Q Consensus 49 RdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~L 86 (241)
-+.+|+++.++++-- |. ...++..|| -|+.+..++
T Consensus 27 a~~i~~~i~~~~~~~-~~-~~~~~~~vl-aaLnla~e~ 61 (89)
T PF05164_consen 27 AELINEKINEIKKKY-PK-LSPERLAVL-AALNLADEL 61 (89)
T ss_dssp HHHHHHHHHHHCTTC-CT-SSHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CC-CCHHHHHHH-HHHHHHHHH
Confidence 468999999999864 53 355666666 455554443
No 387
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=42.59 E-value=1e+02 Score=27.43 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
|+.|..++.+.+.........+..|..+...|.++...-+.....++.+|-..+
T Consensus 178 i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 178 IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555655555555555556666666666666666666666666666664443
No 388
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=42.53 E-value=83 Score=25.98 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=10.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++++...|+.+++.|+.+++.
T Consensus 110 ~~~~l~~L~~~i~~L~~~~~~ 130 (134)
T PF07047_consen 110 LQERLEELEERIEELEEQVEK 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555543
No 389
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=42.44 E-value=35 Score=28.16 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhhccch
Q 026212 85 DLFSQIESLNKENASLLS 102 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~e 102 (241)
.|+.++++|+.....+.+
T Consensus 22 ~l~~~~~~l~~~~~r~~a 39 (165)
T PF01025_consen 22 ELEKEIEELKERLLRLQA 39 (165)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555444443333
No 390
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=42.38 E-value=1.1e+02 Score=27.19 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHHHH
Q 026212 119 SSLESQIEVLQSELR 133 (241)
Q Consensus 119 ~~Lk~e~e~Le~qlk 133 (241)
..|..+|+.|+..|.
T Consensus 200 ~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 200 KKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 391
>PHA02557 22 prohead core protein; Provisional
Probab=42.31 E-value=1.4e+02 Score=28.31 Aligned_cols=65 Identities=23% Similarity=0.123 Sum_probs=34.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.-+|..++..-..-|.+.+++++.|..+|..|++.+.+++.+.-=.+--+.--..+|+++..-+.
T Consensus 136 pee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~E 200 (271)
T PHA02557 136 PEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAE 200 (271)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHh
Confidence 34455555555556666666666666666666666666544432222223333455555554443
No 392
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=42.25 E-value=88 Score=27.91 Aligned_cols=7 Identities=43% Similarity=0.487 Sum_probs=4.3
Q ss_pred hHHHhhH
Q 026212 43 EREKLKR 49 (241)
Q Consensus 43 ~rER~RR 49 (241)
..|-+||
T Consensus 51 ~~E~k~R 57 (247)
T PF06705_consen 51 EAEVKRR 57 (247)
T ss_pred HHHHHHH
Confidence 3466677
No 393
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=42.20 E-value=1.3e+02 Score=26.70 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=17.8
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+++.|...-.++-..|-.+...+..|++|+...
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555566666666655543
No 394
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=42.18 E-value=99 Score=26.38 Aligned_cols=55 Identities=29% Similarity=0.298 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHh--hhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKE--NASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~--n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.-++.|+.+-..|-.. ...|++-+..+..+.++++++...++.++..|+..++.-
T Consensus 23 ~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (151)
T PF14584_consen 23 IKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNC 79 (151)
T ss_pred HHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555666665432 234667778888888999999999999999999998874
No 395
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=42.16 E-value=42 Score=27.08 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
+.+-..-|..++.+|...........+++...-.++..+++++..|+.
T Consensus 71 i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~ 118 (133)
T PF06148_consen 71 IEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEKALLKL 118 (133)
T ss_dssp ---HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677777777666666666666666777777777665543
No 396
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=42.14 E-value=47 Score=28.08 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=28.1
Q ss_pred HHHHHHH-HHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 84 KDLFSQI-ESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 84 k~Lr~~v-~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
++|+..+ ..++.-+..-.+.++.|..-.+.++.+..+|+.+|..++...
T Consensus 85 ~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~C 134 (146)
T PF08702_consen 85 KSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYC 134 (146)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444 444444444444566776666667777777777776665543
No 397
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=41.49 E-value=25 Score=21.60 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELRA 134 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk~ 134 (241)
|..+|+..|..|+.||-.
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456777777777777753
No 398
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=41.35 E-value=69 Score=30.07 Aligned_cols=18 Identities=39% Similarity=0.342 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhhccc
Q 026212 84 KDLFSQIESLNKENASLL 101 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ 101 (241)
++|+++.+.++.+...|.
T Consensus 2 ~el~~~~~~~~~~~r~l~ 19 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLL 19 (378)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455555555555444443
No 399
>PRK14161 heat shock protein GrpE; Provisional
Probab=41.22 E-value=53 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=19.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhh
Q 026212 71 GKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEK 111 (241)
Q Consensus 71 DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK 111 (241)
....|..-+-+.|--++.++++|+.+.+.+.++.-.+.+|-
T Consensus 9 ~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~Aef 49 (178)
T PRK14161 9 NEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEI 49 (178)
T ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544445555555555555555554444443344433
No 400
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=41.13 E-value=53 Score=25.47 Aligned_cols=43 Identities=28% Similarity=0.262 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
+.+.++-|+.....|++.++.+..+..+++++...+...++.+
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444544444444444444444444444444444444443
No 401
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=41.03 E-value=55 Score=26.58 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhh-hccchhhhHHHHhhhhhhhh
Q 026212 81 RLLKDLFSQIESLNKEN-ASLLSESHYVTIEKNELKEE 117 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n-~~L~ees~~L~~EKneLRdE 117 (241)
.||.+||.+|..|..++ ..|.++..+-+.......++
T Consensus 54 t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~~~~~~~~ 91 (103)
T PF08738_consen 54 TYLSELRAQLTTLQDDINEFLTERMEEDKARDAQAGEE 91 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchh
Confidence 78999999999998654 45666655555544444333
No 402
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.88 E-value=1.8e+02 Score=27.94 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+..++-..++.|..++.++.+....-+. +|....+.|..-...|...+++|+.++...
T Consensus 130 ~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~I 187 (300)
T KOG2629|consen 130 QFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTI 187 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3455666677777777777665544333 333333333333345666667777666654
No 403
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.69 E-value=80 Score=31.94 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
.+--|+.+++.|+.+|..|...+-.|+.-..+|-+|++++..+++.+..|+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql 348 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQL 348 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 344567778888888888888777777777778888877777776665444
No 404
>PRK07857 hypothetical protein; Provisional
Probab=40.64 E-value=77 Score=25.87 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhh
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENS 119 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~ 119 (241)
++.-|.+||.+|+++..+.-.|..+--.+..+.-+++.++.
T Consensus 26 ~~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g 66 (106)
T PRK07857 26 SDAEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMASG 66 (106)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45667889999999999888877766666666666666554
No 405
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=40.41 E-value=9.3 Score=39.47 Aligned_cols=50 Identities=32% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
.+.+++.++++|+.+...+.+....|..+.++|.+++..|+.+++.++..
T Consensus 68 ~i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~~ 117 (759)
T PF01496_consen 68 EIDELEEELEELEEELRELNENLEKLEEELNELEEEKNVLEEEIEFLEEL 117 (759)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666777766666666666677777777777777777777777665
No 406
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=40.35 E-value=1.6e+02 Score=28.66 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=12.5
Q ss_pred hhhhhhhhhhHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQ 129 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le 129 (241)
..+.+|...|+.++++|+
T Consensus 95 ~~a~~e~~~l~~~l~~le 112 (367)
T PRK00578 95 AEAEAELKALEKKLAALE 112 (367)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777777777776
No 407
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.33 E-value=79 Score=35.34 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 026212 79 AARLLKDLFSQIESLNKENAS 99 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~ 99 (241)
+.+.+++||++|+.|......
T Consensus 362 narvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 362 NARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 568899999999999876654
No 408
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=40.30 E-value=1.9e+02 Score=28.16 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=43.4
Q ss_pred HHhhHhHHHhhhcc-CCCC-CCCchh-------hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhh
Q 026212 50 EHLNDLFLDLANAV-EVNQ-PNNGKA-------CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSS 120 (241)
Q Consensus 50 dkLNerF~~L~slL-~P~~-~K~DKa-------sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~ 120 (241)
+.+..+|.+|...+ .|+- ...+|+ +.|.+.+..+.+|....+++++-.+-++++.. ...+.++.+|...
T Consensus 9 e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D--~~~~~~~~~e~~~ 86 (359)
T PRK00591 9 EALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESD--PEMREMAKEELKE 86 (359)
T ss_pred HHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHH
Confidence 44556677776544 2332 223333 34444444444444444444332222211111 1123456678889
Q ss_pred hHHHHHHHHHHHHHH
Q 026212 121 LESQIEVLQSELRAR 135 (241)
Q Consensus 121 Lk~e~e~Le~qlk~r 135 (241)
|+.++++++.+|+..
T Consensus 87 l~~~l~~~e~~l~~~ 101 (359)
T PRK00591 87 LEERLEELEEELKIL 101 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988864
No 409
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=40.29 E-value=1.6e+02 Score=28.62 Aligned_cols=18 Identities=39% Similarity=0.547 Sum_probs=12.2
Q ss_pred hhhhhhhhhhHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQ 129 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le 129 (241)
.++.+|...|..++++++
T Consensus 95 ~~a~~e~~~l~~~l~~le 112 (364)
T TIGR00020 95 NELDAELKALEKKLAELE 112 (364)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777777777776
No 410
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=40.28 E-value=1.3e+02 Score=21.34 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 50 EHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 50 dkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
|.|+.+|.++...+ -.---.+..++..+.+.--.....|-++++.|...-+ ...+-.++..|+
T Consensus 1 d~Lw~~F~~a~~~~------------~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d-----~~~~~~~~k~l~ 63 (77)
T PF03993_consen 1 DELWKRFRAACDAF------------FDRRKEFFEEQDAEREENLEKKEALIEEAEALAESED-----WKEAAEEIKELQ 63 (77)
T ss_pred CHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHH
Confidence 45777777777654 1111122333333333333333344445544433221 445666667777
Q ss_pred HHHHH
Q 026212 130 SELRA 134 (241)
Q Consensus 130 ~qlk~ 134 (241)
++.+.
T Consensus 64 ~~Wk~ 68 (77)
T PF03993_consen 64 QEWKE 68 (77)
T ss_pred HHHHH
Confidence 77765
No 411
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=40.08 E-value=42 Score=26.52 Aligned_cols=19 Identities=32% Similarity=0.239 Sum_probs=12.0
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 026212 115 KEENSSLESQIEVLQSELR 133 (241)
Q Consensus 115 RdEk~~Lk~e~e~Le~qlk 133 (241)
.-||.+|+.|+.+|+....
T Consensus 50 A~EN~rL~ee~rrl~~f~~ 68 (86)
T PF12711_consen 50 AMENIRLREELRRLQSFYV 68 (86)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466677777766666553
No 412
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.08 E-value=1.1e+02 Score=31.56 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=37.8
Q ss_pred hhHhHHHhhhcc-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 52 LNDLFLDLANAV-EVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 52 LNerF~~L~slL-~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
||+-|..|..+- .|.. ..-+..+|..|-.+...+..-...|+.....+..++...-.+.|.|-++...|-.+|.
T Consensus 114 l~~ff~al~~ls~~P~~-~~~R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~ 188 (613)
T PRK08471 114 LQDYFNAWNDFASNPKD-SAQKQALAQKTETLTNNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIK 188 (613)
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444432 2222 3446667777766666666555555555555555555555555555444444444443
No 413
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=39.94 E-value=1.6e+02 Score=25.94 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+..|..+++.++.....|...+..|+....+++..+..|.+.....+.+.+.
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~ 152 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDV 152 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555555555555555555554443
No 414
>PF13514 AAA_27: AAA domain
Probab=39.86 E-value=1e+02 Score=33.54 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=49.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhh---hccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKEN---ASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n---~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+..+-..|..++.-+++|+.++.+..... ..+..+...+..+..+|+.+...|..+..+|+...+.
T Consensus 145 prg~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~ 213 (1111)
T PF13514_consen 145 PRGRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRA 213 (1111)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677789999999999999999988544 4466677777777777777777777777777665443
No 415
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=39.77 E-value=1.3e+02 Score=25.43 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+.-+.+....++.|........+++..|....++|-+|..+|..=.+.|...|+-+
T Consensus 20 l~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF 75 (157)
T PF04136_consen 20 LDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYF 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34455556666677777777778888888888888889999988888888888765
No 416
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.75 E-value=97 Score=34.37 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=16.5
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCch
Q 026212 198 QLTSKPASNVSKPHARYPNPADSWPS 223 (241)
Q Consensus 198 q~~Ppa~~dtskpharyPt~~~~~p~ 223 (241)
-|||-.-... ..+-||...|.-|.
T Consensus 577 TF~PLNrl~~--r~v~yp~~sdaiPl 600 (1200)
T KOG0964|consen 577 TFMPLNRLKA--RDVEYPKDSDAIPL 600 (1200)
T ss_pred EEeecccCch--hhccCCCCCCccch
Confidence 4677655444 67788888887763
No 417
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.61 E-value=59 Score=25.87 Aligned_cols=43 Identities=33% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSL 121 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~L 121 (241)
+.+|+.+ |..+++.|+...+.++..+..++.+.+.+.+..+.+
T Consensus 85 ~~eA~~~---l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 85 LEEAIEF---LDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 418
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.59 E-value=1.4e+02 Score=25.91 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+.-..+..|+.+++.+......|...+..|+....+++.+...|++....-+.+.+.
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~ 151 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKV 151 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777777777777777777777777777777777766655555543
No 419
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=39.52 E-value=1.4e+02 Score=23.52 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEK 111 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK 111 (241)
++-.+-++--|.=++.+++.+|+.|+++...|++||
T Consensus 11 ~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555667778888877666665544444443
No 420
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=39.45 E-value=98 Score=32.08 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=43.9
Q ss_pred hhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 52 LNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 52 LNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
||+-|..|..+-.--..-.-+..+|+.|-.++.++..--..|......+..++.....+.|.|-++...|-.+|.+
T Consensus 110 L~~Ff~alq~la~~P~~~~~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~ 185 (651)
T PRK06945 110 ITSFFTGLQNVANNPSDPSARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAK 185 (651)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554444321001234466777777777777666666666666666666666666666666655555555544
No 421
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.41 E-value=94 Score=34.84 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 026212 73 ACVLNEAARLLKDLFSQIESLNKENAS 99 (241)
Q Consensus 73 asIL~DAI~ylk~Lr~~v~~Lk~~n~~ 99 (241)
..-|.++|+-+.+++..++.|+.....
T Consensus 222 i~~l~e~~~~~~~~~~~le~l~~~~~~ 248 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERLEALERA 248 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888888888866654
No 422
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=39.15 E-value=1.8e+02 Score=28.42 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhh-----------hhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEK-----------NELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK-----------neLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
+.-|-.|-.+-.+|..+.+.|+.+.+.+..+. .+|+++...|+.+|..|+.+++..-.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 97 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEA 97 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666655554332 34455566677777777777766543
No 423
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=39.05 E-value=1.1e+02 Score=28.72 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=17.8
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 106 YVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 106 ~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+..|++||..+-..|..+...|.+++..
T Consensus 218 ~~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 218 HYVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34556666666666666666666666554
No 424
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=39.00 E-value=25 Score=29.37 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=28.9
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 76 LNEAARLLK-----DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 76 L~DAI~ylk-----~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
+..|.++|| -+|++|+-|++ .|++|...-+.|+.||.-||.-+.
T Consensus 50 IeQAMDLVKtHLmfAVREEVe~Lk~-------qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 50 IEQAMDLVKTHLMFAVREEVEVLKE-------QIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 555666665 36777777765 455555555667888888876554
No 425
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=38.91 E-value=1.3e+02 Score=29.10 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=11.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHH
Q 026212 113 ELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 113 eLRdEk~~Lk~e~e~Le~qlk 133 (241)
++.++...++.++..++.++.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554
No 426
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.84 E-value=79 Score=30.23 Aligned_cols=57 Identities=23% Similarity=0.252 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+|=.-|..|..++..-.+++..-+++|-.|..+.-+|......+-.|.+.|.+.|..
T Consensus 210 ~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 210 EANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333344444444444445555555555555555555555555555555555555543
No 427
>PF14645 Chibby: Chibby family
Probab=38.81 E-value=42 Score=27.50 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhh
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNEL 114 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneL 114 (241)
|+.+.+.|+++|.-|.-++..|..-..|.
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtet 104 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTET 104 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444444444433333
No 428
>PRK11020 hypothetical protein; Provisional
Probab=38.65 E-value=79 Score=26.47 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccch-hhhHHHHhhhhhh
Q 026212 50 EHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLS-ESHYVTIEKNELK 115 (241)
Q Consensus 50 dkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~e-es~~L~~EKneLR 115 (241)
.+||+|+-.++.=+ . +.+......+|.++..+++.|..++..|.. +...|..|...|.
T Consensus 8 q~L~drLD~~~~Kl-a-------aa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~ 66 (118)
T PRK11020 8 KRLSDRLDAIRHKL-A-------AASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLM 66 (118)
T ss_pred HHHHHHHHHHHHHH-H-------HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666544 1 223333445555666666666555555432 3344444444443
No 429
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=38.64 E-value=54 Score=31.24 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=43.9
Q ss_pred hhhHHHhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhh
Q 026212 41 KAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELK 115 (241)
Q Consensus 41 Ka~rER~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLR 115 (241)
+...++.||.+.+.+..+.|- ...|-.=-.++..=++.|..+.++||.+...|..||+||++-..|.+
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRY-------RqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRY-------RQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777755554 12233334455555777888888888888888888888777665544
No 430
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=38.43 E-value=1.4e+02 Score=24.96 Aligned_cols=7 Identities=14% Similarity=0.501 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 026212 130 SELRARV 136 (241)
Q Consensus 130 ~qlk~r~ 136 (241)
..++.|+
T Consensus 101 ~kyk~rL 107 (136)
T PF04871_consen 101 KKYKERL 107 (136)
T ss_pred HHHHHHH
Confidence 3444444
No 431
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.42 E-value=2e+02 Score=25.74 Aligned_cols=86 Identities=16% Similarity=0.221 Sum_probs=42.8
Q ss_pred HhhHhHHHhhhccCCCCCCCchhhh-HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 51 HLNDLFLDLANAVEVNQPNNGKACV-LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 51 kLNerF~~L~slL~P~~~K~DKasI-L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
+||-.|..+..-|.+-..+.+-... +...-.-+..|...++.|..........+..+...-..+...-..|...|.++.
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~ 100 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQ 100 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555443333332222 111222245555555555555554444555555555555556666666666666
Q ss_pred HHHHHHH
Q 026212 130 SELRARV 136 (241)
Q Consensus 130 ~qlk~r~ 136 (241)
..++..+
T Consensus 101 ~~i~~l~ 107 (264)
T PF06008_consen 101 DNIQELI 107 (264)
T ss_pred HHHHHHH
Confidence 6666554
No 432
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=38.41 E-value=93 Score=33.22 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=24.0
Q ss_pred hhccchhhhHHHHhhhhhhh-------hhhhhHHHHHHHHHHHHHH
Q 026212 97 NASLLSESHYVTIEKNELKE-------ENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 97 n~~L~ees~~L~~EKneLRd-------Ek~~Lk~e~e~Le~qlk~r 135 (241)
+..++++...+..|.++|+| +...|...|++|+.+|+..
T Consensus 366 ~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 366 IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555 5667777788888777543
No 433
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.30 E-value=59 Score=25.71 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhh
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSESHYVTIEK 111 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK 111 (241)
+-|..-|+..-++|+.|+++...+.+.++++-.|-
T Consensus 10 tva~~QLrafIerIERlEeEk~~i~~dikdvy~ea 44 (85)
T COG3750 10 TVAAGQLRAFIERIERLEEEKKTIADDIKDVYAEA 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888999999999999888887776654
No 434
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=38.22 E-value=4.6e+02 Score=27.25 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=7.0
Q ss_pred CCceeeeecCCC
Q 026212 176 APAVLVVPIHSD 187 (241)
Q Consensus 176 a~~~~~vP~~~~ 187 (241)
.++...+|+.|.
T Consensus 303 kpsswelpIrPq 314 (666)
T KOG4825|consen 303 KPSSWELPIRPQ 314 (666)
T ss_pred CCCcceeecccc
Confidence 355667777543
No 435
>PRK04863 mukB cell division protein MukB; Provisional
Probab=38.06 E-value=94 Score=35.49 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=5.9
Q ss_pred HHHhhHhHHHhhhc
Q 026212 49 REHLNDLFLDLANA 62 (241)
Q Consensus 49 RdkLNerF~~L~sl 62 (241)
..++++.+.+|..-
T Consensus 309 L~rI~diL~ELe~r 322 (1486)
T PRK04863 309 LVEMARELAELNEA 322 (1486)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 436
>PRK01156 chromosome segregation protein; Provisional
Probab=38.02 E-value=1e+02 Score=32.20 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=6.0
Q ss_pred hhhhhhhhHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQ 129 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le 129 (241)
++.+...++.+++.|+
T Consensus 223 ~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 223 LSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 437
>PF14645 Chibby: Chibby family
Probab=37.83 E-value=56 Score=26.73 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 87 FSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 87 r~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
..+...|+.+|..|++|.+.|+.+..=|-|=.+.-.+|..-++.+
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~ 114 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKE 114 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666555555555554444444444444
No 438
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.77 E-value=1.6e+02 Score=25.96 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc-cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENAS-LLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~-L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
++|.|-|+.|-+.+.+|...-.+... +++-.++-..+|| +.+.-+..+.-|..+|.+|-+-+.
T Consensus 5 ~l~~dri~Al~~iEkeI~~~mq~Ag~iiqeLgKEK~~~kn-~e~qa~~F~ksit~VE~eLSaQi~ 68 (180)
T KOG4057|consen 5 PLLTDRIQALVTIEKEIDEMMQCAGEIIQELGKEKQIGKN-MEDQANNFKKSITQVENELSAQIQ 68 (180)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999998877766554 4444466666777 777777788888888888877553
No 439
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.73 E-value=94 Score=29.57 Aligned_cols=9 Identities=33% Similarity=0.685 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q 026212 121 LESQIEVLQ 129 (241)
Q Consensus 121 Lk~e~e~Le 129 (241)
|+.+|++|+
T Consensus 93 l~~~i~~l~ 101 (301)
T PF06120_consen 93 LQKKIDSLK 101 (301)
T ss_pred HHHHHHHHH
Confidence 333333333
No 440
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=37.68 E-value=34 Score=33.49 Aligned_cols=32 Identities=28% Similarity=0.116 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHh
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIE 110 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~E 110 (241)
.|.-.-.||.|-.+|+.||+.|..+...|+.|
T Consensus 30 ~~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 30 SIDENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred chhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666665555433
No 441
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.52 E-value=1.1e+02 Score=30.76 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=19.7
Q ss_pred chhhhHHHHHHH-HHHHHHHHHHHHHhhhccchh
Q 026212 71 GKACVLNEAARL-LKDLFSQIESLNKENASLLSE 103 (241)
Q Consensus 71 DKasIL~DAI~y-lk~Lr~~v~~Lk~~n~~L~ee 103 (241)
++.-+-.+||.- +..++.++++|+++|..|.++
T Consensus 37 ~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 37 VILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566654 344556777777777776554
No 442
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=37.47 E-value=61 Score=26.29 Aligned_cols=56 Identities=25% Similarity=0.245 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
||.-+=+=+.+.+.++-|+...+.|...+..+..+..+++++...+...+..+..+
T Consensus 82 lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 82 LGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333478888888888888787777777777777777766666666665554
No 443
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=37.42 E-value=1.3e+02 Score=32.41 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=10.2
Q ss_pred HhhHHHhhHhHHHhhhc
Q 026212 46 KLKREHLNDLFLDLANA 62 (241)
Q Consensus 46 R~RRdkLNerF~~L~sl 62 (241)
|||=.-||.+|.+=...
T Consensus 400 rRrLrilnqqlreqe~~ 416 (861)
T PF15254_consen 400 RRRLRILNQQLREQEKA 416 (861)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34445678888775443
No 444
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=37.39 E-value=60 Score=34.64 Aligned_cols=54 Identities=26% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhc----------cchhhhHHHHhhhh-hhhhhhhhHHHHHHHHHHHHHHHhh
Q 026212 85 DLFSQIESLNKENAS----------LLSESHYVTIEKNE-LKEENSSLESQIEVLQSELRARVVQ 138 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~----------L~ees~~L~~EKne-LRdEk~~Lk~e~e~Le~qlk~r~~~ 138 (241)
.+.++|++|+.++.. |.+.+..|+.|... -..--...|.-|+.|++|+|+.++.
T Consensus 646 ~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~ 710 (762)
T PLN03229 646 NLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAE 710 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
No 445
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=37.39 E-value=82 Score=28.71 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=24.6
Q ss_pred HHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 91 ESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 91 ~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
++|...-+.|..+...|..|...|..|++.|-+|++.++..++.-
T Consensus 41 ~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~ 85 (228)
T PRK06800 41 EELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQ 85 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555556666666666666655555443
No 446
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=37.39 E-value=92 Score=27.75 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
.+-..+..+...|......|..++..|...+..|.+.+..|+.|..=+
T Consensus 156 e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~ 203 (206)
T PF14988_consen 156 EFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYL 203 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666666666666665443
No 447
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=37.35 E-value=53 Score=31.35 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
-.+.+.+|+.+|++|+++.+......+....+ ......|..+++.|+++|..
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e----~~~~~~l~~~~~~L~~~L~~ 143 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKRKADSKESDEE----KISPEELAQQLEELSKQLDS 143 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccc----cCChhhHHHHHHHHHHHHHH
Confidence 45889999999999998887765443332211 11223345566666666665
No 448
>PRK14148 heat shock protein GrpE; Provisional
Probab=37.18 E-value=61 Score=28.89 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=17.0
Q ss_pred hhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 97 NASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 97 n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
+..|++++..|+.+..+|+|...++.+|.+++..
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rK 75 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRK 75 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555554443
No 449
>PRK04406 hypothetical protein; Provisional
Probab=37.18 E-value=91 Score=23.67 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=28.5
Q ss_pred HHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 90 IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 90 v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
++.|+.....|+.++-....-..+|-+.......+|+.|+.+|+..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666666666666666666553
No 450
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=37.11 E-value=2.9e+02 Score=24.28 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 73 ACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 73 asIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
-.+--.|+.-..+...+++.|+.+...+...+..|+....+|+.....++.....|-..++.
T Consensus 84 EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 84 EDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777777777777777777777777777777776666555544
No 451
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=37.09 E-value=75 Score=28.35 Aligned_cols=15 Identities=40% Similarity=0.346 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhh
Q 026212 83 LKDLFSQIESLNKEN 97 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n 97 (241)
+..|+.+|..|..+.
T Consensus 114 i~~L~~kI~~L~~~i 128 (181)
T PF04645_consen 114 IEILRLKISSLQKEI 128 (181)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555555555443
No 452
>PRK02793 phi X174 lysis protein; Provisional
Probab=37.03 E-value=1.2e+02 Score=22.78 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
.|.+|+.++.-++.-.+.|.+.+-....+...|+.+...|...+..
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444444433333
No 453
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.00 E-value=98 Score=34.23 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=10.0
Q ss_pred hhHHHhhHhHHHhhhcc
Q 026212 47 LKREHLNDLFLDLANAV 63 (241)
Q Consensus 47 ~RRdkLNerF~~L~slL 63 (241)
+-+++|.++...+-+.|
T Consensus 417 r~kE~Lsr~~d~aEs~i 433 (1243)
T KOG0971|consen 417 RQKERLSRELDQAESTI 433 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33566776666655554
No 454
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=36.81 E-value=94 Score=32.06 Aligned_cols=49 Identities=35% Similarity=0.348 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
+--+.|.+|+.++++++.+.+.+..+++.+..|..+.+.++..|+.+..
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666666666666666666666666666666665555555544
No 455
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.69 E-value=1.1e+02 Score=33.81 Aligned_cols=84 Identities=23% Similarity=0.185 Sum_probs=40.8
Q ss_pred hhHHHhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhh
Q 026212 42 AEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSL 121 (241)
Q Consensus 42 a~rER~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~L 121 (241)
.+-||+|||-.+-|=...-- + +-..-.-+-.=+......|.+|..+++.++.....+++........+..|..++..|
T Consensus 411 ~EIerLK~dl~AaReKnGvy-i-see~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~ 488 (1041)
T KOG0243|consen 411 EEIERLKRDLAAAREKNGVY-I-SEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKL 488 (1041)
T ss_pred HHHHHHHHHHHHhHhhCceE-e-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 36789998765443221111 1 211111111123455566677777777776666666555443334444444444444
Q ss_pred HHHHHH
Q 026212 122 ESQIEV 127 (241)
Q Consensus 122 k~e~e~ 127 (241)
+.++.+
T Consensus 489 k~~L~~ 494 (1041)
T KOG0243|consen 489 KSKLQN 494 (1041)
T ss_pred HHHHHH
Confidence 444433
No 456
>PRK00295 hypothetical protein; Provisional
Probab=36.64 E-value=1.1e+02 Score=22.59 Aligned_cols=47 Identities=13% Similarity=-0.016 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
|.+|+.++.-++.-.+.|.+.+-....+...|+.....|...+..++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555554444
No 457
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=36.62 E-value=1.5e+02 Score=25.07 Aligned_cols=27 Identities=11% Similarity=-0.097 Sum_probs=12.8
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026212 68 PNNGKACVLNEAARLLKDLFSQIESLN 94 (241)
Q Consensus 68 ~K~DKasIL~DAI~ylk~Lr~~v~~Lk 94 (241)
.-+|=-++-.+-..|...+.++-.+|.
T Consensus 40 ~~iDFeqLkien~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 40 HLIDFEQLKIENQQLNEKIEERNKELL 66 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555554444444
No 458
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=36.56 E-value=38 Score=32.00 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHH-HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 72 KACVLNEAARLLK-DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 72 KasIL~DAI~ylk-~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
=..++.+=|++.. .||.+.+.=|+....| +++..|+.....|.-++..|.++..+|..++-
T Consensus 197 id~e~qe~~kleRkrlrnreaa~Kcr~rkL-drisrLEdkv~~lk~~n~~L~~~l~~l~~~v~ 258 (279)
T KOG0837|consen 197 IDMEDQEKIKLERKRLRNREAASKCRKRKL-DRISRLEDKVKTLKIYNRDLASELSKLKEQVA 258 (279)
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3466777777664 5666666555444333 34555555555555555555555555544433
No 459
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.47 E-value=54 Score=25.85 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=20.2
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 110 EKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 110 EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+.+|.+|+..|+...++.|.||+.
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3445778888999999999999886
No 460
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=36.41 E-value=82 Score=36.74 Aligned_cols=55 Identities=25% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
...+.+|+.+|++|+.+...|+.+..+|+.+.....-++..|+.+-+++.++.+.
T Consensus 1242 ~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~ 1296 (1822)
T KOG4674|consen 1242 LEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQD 1296 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 461
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=36.32 E-value=76 Score=33.37 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 80 ARLLKDLFSQ-IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 80 I~ylk~Lr~~-v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.++++-|+++ +.++..-...++.+++.|+.++..-.++...|+.+++.|+.
T Consensus 542 ~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~ 593 (717)
T PF10168_consen 542 SQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRE 593 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=36.30 E-value=1.1e+02 Score=31.92 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
+|+--|+.++++|..+|+.|..|-..|+....+|-.|+..||-
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 6888888888888888888888888888888888888887763
No 463
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=36.28 E-value=2.2e+02 Score=28.74 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 72 KACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 72 KasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+...-+....-+.++..++..++.+...+.+.+..|..+=.+-|+....++.++..+...++.
T Consensus 370 ~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 370 QQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777777777777777777777666666677777777777777666666
No 464
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=36.23 E-value=1.1e+02 Score=30.20 Aligned_cols=55 Identities=27% Similarity=0.290 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhhccch--hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLS--ESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~e--es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+.+++|+++++.++.....+.. ...+++.+...|..+...|+..++.|+.-++..
T Consensus 170 ~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l 226 (475)
T PF10359_consen 170 ERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDL 226 (475)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655554331 333455566666666777777777777766664
No 465
>PF15294 Leu_zip: Leucine zipper
Probab=36.11 E-value=97 Score=29.27 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHY 106 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~ 106 (241)
.-|.+|+++.++|+.....++.....
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~ 157 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATS 157 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777776666555544333
No 466
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=36.05 E-value=43 Score=31.30 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=14.5
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 105 HYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 105 ~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..|..|.++|++|...|+.+.+..++.+..
T Consensus 42 ~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~ 71 (308)
T PF11382_consen 42 DSLREENDELRAELDALQAQLNAADQFIAA 71 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555544444444
No 467
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=35.97 E-value=1.7e+02 Score=22.31 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
..=..+|+.|+.+...|+.+...|+++.+.+.. ..-+.....|..+++.|-.++.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~--s~~~~~R~~L~~~l~~lv~~mE 67 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDP--SLGRRKRRDLEQELEELVKRME 67 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccChHHHHHHHHHHHHHHHHHH
Confidence 344678999999999999999888776665532 2223333445555555544443
No 468
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.95 E-value=88 Score=28.65 Aligned_cols=53 Identities=30% Similarity=0.256 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhhhccchhhh------HHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESH------YVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~------~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
|-+|..|++.++.+.+.|....+ .-...+.+|+.-..+.+-.|.+||.-|+..
T Consensus 131 Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L 189 (233)
T PF04065_consen 131 IDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLL 189 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677778888877777664321 234445578888888999999999888874
No 469
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=35.92 E-value=1.2e+02 Score=30.61 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
|=-+.+++.++..++.+...-+++-.....|++..+.|...-..|++-.++++
T Consensus 73 Vfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~ 125 (499)
T COG4372 73 VFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQEL 125 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666655555555555555555555555555555544444443
No 470
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=35.77 E-value=64 Score=24.25 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc-------------------cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENAS-------------------LLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~-------------------L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.-|...++.+.....+++.|...... |.+++..+..+...|......|..++.+++..|..
T Consensus 22 ~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 22 QQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777778888888888766321 34444455555555555555555555555555543
No 471
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=35.69 E-value=1.1e+02 Score=34.43 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=3.9
Q ss_pred HhHHHhhhcc
Q 026212 54 DLFLDLANAV 63 (241)
Q Consensus 54 erF~~L~slL 63 (241)
++|..|-.++
T Consensus 180 ~ry~~l~~~l 189 (1353)
T TIGR02680 180 ERYAALLDLL 189 (1353)
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 472
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=35.46 E-value=1.9e+02 Score=21.69 Aligned_cols=11 Identities=45% Similarity=0.646 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q 026212 121 LESQIEVLQSE 131 (241)
Q Consensus 121 Lk~e~e~Le~q 131 (241)
|..++..++..
T Consensus 77 l~~q~~~l~~~ 87 (127)
T smart00502 77 LEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 473
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=35.42 E-value=12 Score=29.96 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=6.9
Q ss_pred ceeeeecCCCCC
Q 026212 178 AVLVVPIHSDLQ 189 (241)
Q Consensus 178 ~~~~vP~~~~l~ 189 (241)
.+.++|+.+.+.
T Consensus 95 ~v~~l~ld~~~S 106 (118)
T PF08286_consen 95 DVHVLNLDPKLS 106 (118)
T ss_dssp SEEEEEE-TTTT
T ss_pred CceEEeeCCCCC
Confidence 467788865443
No 474
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=35.38 E-value=2.1e+02 Score=27.07 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=10.4
Q ss_pred hhHHHhhHhHHHhhhccCCCCC
Q 026212 47 LKREHLNDLFLDLANAVEVNQP 68 (241)
Q Consensus 47 ~RRdkLNerF~~L~slL~P~~~ 68 (241)
.+-..+..+..+|+...-|..+
T Consensus 261 ~~l~~le~~l~~l~~~y~~~hP 282 (444)
T TIGR03017 261 TDIARAESKLAELSQRLGPNHP 282 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCCCc
Confidence 3334445555555554444443
No 475
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=35.34 E-value=43 Score=25.22 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=10.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q 026212 113 ELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 113 eLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
||.+....|..||++|+.|+..
T Consensus 29 El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555555543
No 476
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=35.22 E-value=81 Score=26.48 Aligned_cols=52 Identities=25% Similarity=0.352 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
.|+..+.+|+.+...=-+++.++=..--.||+....|+.-|..|+..|.+.+
T Consensus 18 glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRaGl 69 (120)
T PF10482_consen 18 GLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRAGL 69 (120)
T ss_pred HHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444444433222223333322222367777777777777777776644
No 477
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=35.22 E-value=1.7e+02 Score=28.29 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=6.8
Q ss_pred hhhhHHHHHHHHHHH
Q 026212 118 NSSLESQIEVLQSEL 132 (241)
Q Consensus 118 k~~Lk~e~e~Le~ql 132 (241)
..+|+.|.+..+..|
T Consensus 357 l~~L~Re~~~~~~~Y 371 (498)
T TIGR03007 357 LTQLNRDYEVNKSNY 371 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555554444433
No 478
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=35.19 E-value=1.3e+02 Score=21.65 Aligned_cols=52 Identities=25% Similarity=0.357 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhccchhh---hHHHHh----hhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSES---HYVTIE----KNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees---~~L~~E----KneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+..|..++++++.+...++..+ +++..- ...-|+....+..++++|+..|..
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666665555544332 222221 122344556677777777777764
No 479
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.18 E-value=78 Score=29.46 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhh
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELK 115 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLR 115 (241)
+|+.++..+.+....|+.|++.+....+..+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555
No 480
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=35.15 E-value=1e+02 Score=28.14 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHH---HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 74 CVLNEAARLLKD---LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 74 sIL~DAI~ylk~---Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+++.-++++-.- -.+++.+-+++...|..-++...+|++|.|+.-++|-.+...++++.
T Consensus 9 ~Ll~TTlELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l~~~~ 70 (214)
T PF07795_consen 9 KLLYTTLELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEKLSLQQQQ 70 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 345555554332 23344444455556666777788999999999999988877777654
No 481
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=35.12 E-value=36 Score=33.33 Aligned_cols=20 Identities=40% Similarity=0.423 Sum_probs=7.6
Q ss_pred HHHhhhccchhhhHHHHhhh
Q 026212 93 LNKENASLLSESHYVTIEKN 112 (241)
Q Consensus 93 Lk~~n~~L~ees~~L~~EKn 112 (241)
|+.||..|..|+.+|+.|..
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVe 56 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVE 56 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 482
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=35.07 E-value=1.1e+02 Score=34.01 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.+|.+.+..+..|.+...+|+++..+.......+....-+|+.++.-|+.|-.-|..|++
T Consensus 495 k~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~ 554 (1195)
T KOG4643|consen 495 KSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQ 554 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 483
>PRK10698 phage shock protein PspA; Provisional
Probab=35.05 E-value=1.5e+02 Score=26.46 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
...+..|+.+++..+.....|...+..|+....+.+..+..|.+....-+.+.+..
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~ 153 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVR 153 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666677777777777777777777766666655555543
No 484
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=34.71 E-value=47 Score=25.14 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 026212 78 EAARLLKDLFSQIESLNKENASLL 101 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ 101 (241)
++|.++-+|..+++.|+.++..|+
T Consensus 60 ~gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 60 EGIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577788888888888887766554
No 485
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=34.70 E-value=1.7e+02 Score=25.65 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhh
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENS 119 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~ 119 (241)
||++++.....|+.|.+++.-|+.+-..+++|..
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888777777666654
No 486
>PTZ00464 SNF-7-like protein; Provisional
Probab=34.66 E-value=1.4e+02 Score=26.84 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhhcc
Q 026212 84 KDLFSQIESLNKENASL 100 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L 100 (241)
+.|+.++..|......+
T Consensus 21 ~~l~~r~~~l~kKi~~l 37 (211)
T PTZ00464 21 KRIGGRSEVVDARINKI 37 (211)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 487
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=34.61 E-value=1.2e+02 Score=31.06 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred hhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 52 LNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 52 LNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
||+-|..|..+-.--..-.-+..+|..|-.+..+++.--..|......+..++...-.+.|.|-++...|-.+|...
T Consensus 109 l~~ff~alq~la~~P~~~~~R~~vl~~A~~La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~~ 185 (624)
T PRK12714 109 WSNFFDSTSALSSNASSTAERQSMLDSGNSLATRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGSS 185 (624)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 488
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=34.58 E-value=1.1e+02 Score=29.87 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
|.--|.-.+++..+..++++....++.-...-+.+.+|+.+|...+|.|+|+
T Consensus 275 L~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 275 LASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=34.56 E-value=1.4e+02 Score=25.09 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 75 VLNEAARLLKDLFSQIESLN-KENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk-~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
+| .++--++.||+.+.+|. ++.+.+.+....+..|+.+-..+....+.|+...-.+++..+.
T Consensus 4 ~l-k~l~n~R~lra~~re~~~e~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~ 66 (134)
T PRK10328 4 ML-QSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELMK 66 (134)
T ss_pred HH-HHHhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=34.38 E-value=1.8e+02 Score=32.06 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 46 KLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
|.-|+-|.++..+=.-+=+-..-..||--.+..+..| |+-+..|++....++..++.|.....+|.-|++.|..-|
T Consensus 54 rserdalhe~lvdkaglneSviie~sk~vstqetriy----Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti 129 (1265)
T KOG0976|consen 54 RSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIY----RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTI 129 (1265)
T ss_pred HhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 026212 126 EVLQSELRA 134 (241)
Q Consensus 126 e~Le~qlk~ 134 (241)
..+|.+++.
T Consensus 130 ~~~q~d~ke 138 (1265)
T KOG0976|consen 130 QGAQDDKKE 138 (1265)
T ss_pred HHHHHHHHH
No 491
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=34.37 E-value=84 Score=24.00 Aligned_cols=49 Identities=24% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|...|+.|..+++.|....+....|...++++......-+..++.+|+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~ 49 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNT 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=34.36 E-value=1.6e+02 Score=28.76 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 50 EHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 50 dkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
..||+-|..|..+-.--....-+..+|..|-.+...+..-...|......+..++...-.+.|.+-++...|-.+|.+
T Consensus 112 ~~l~~ff~a~~~ls~~P~~~~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 189 (431)
T PRK06799 112 SLMDGFFNAFREVAKNPEQANYYDTLISETGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIGQ 189 (431)
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=34.34 E-value=1.2e+02 Score=32.71 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 50 EHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 50 dkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
+++|.-+..++..++=+.--.-..+=-.| +.+..-..+-..-.+..+.|.++...+++...+++-++.+|..+||+|.
T Consensus 173 qe~naeL~rarqreemneeh~~rlsdtvd--ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr 250 (916)
T KOG0249|consen 173 EELNAELQRARQREKMNEEHNKRLSDTVD--ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLR 250 (916)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q ss_pred HHHHH
Q 026212 130 SELRA 134 (241)
Q Consensus 130 ~qlk~ 134 (241)
+++++
T Consensus 251 ~e~~q 255 (916)
T KOG0249|consen 251 GELDQ 255 (916)
T ss_pred HHHHH
No 494
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.32 E-value=1e+02 Score=26.37 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.++.+-..+...|+.+.-.-+.|++.|..--+--......|..||..|.++|..
T Consensus 54 ~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 54 KIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
No 495
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=34.24 E-value=73 Score=34.82 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
|.|=.+-|-+|-+-+.-+-...++|+...+.+....+.+...|...++|+++|..+-.++++|+
T Consensus 332 kadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQi 395 (1265)
T KOG0976|consen 332 KADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQI 395 (1265)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=34.23 E-value=1.2e+02 Score=32.57 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCCC
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDLN 144 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~~~ 144 (241)
|.++..-..+-.++++.|..+.+.+.....++..+|..|+.++.+|..+++.|..+....-..+..+++
T Consensus 204 lqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~ 272 (916)
T KOG0249|consen 204 LQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDHLR 272 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchhh
No 497
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=34.19 E-value=77 Score=28.95 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
|-.-++.|......++.....+......|+.|+..|...+..|+..|+
T Consensus 206 L~~~~~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 206 LSECLERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 498
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=34.18 E-value=1.2e+02 Score=33.63 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 72 KACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 72 KasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+.+=+..-|.-+-.|..+-+.|....+.|++++..+..-+-+|+|.-..|..|.++|+.+...+
T Consensus 392 qsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~ 455 (1195)
T KOG4643|consen 392 QSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTV 455 (1195)
T ss_pred hhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=34.12 E-value=1.2e+02 Score=27.43 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
++-..++-|.-+.|.....+|..|++.|..|+++-++|.....-|-| .+.|..+-.-|.|.-.|
T Consensus 37 ~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDd--dRqKgrklarEWQrFGr 100 (195)
T PF10226_consen 37 VEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDD--DRQKGRKLAREWQRFGR 100 (195)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch--hHHHhHHHhHHHHHhhh
No 500
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=34.08 E-value=67 Score=30.86 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=0.0
Q ss_pred HhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 026212 46 KLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSE 103 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ee 103 (241)
|++-+.+=+...+--.+ |.+.. |.++-+.|.+|+.++..|+.+...|..+
T Consensus 269 r~~~qe~~e~~L~~Lnl--PTRsE------lDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 269 RIQQQEIVEALLKMLNL--PTRSE------LDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHhCCC--CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Done!