Query 026212
Match_columns 241
No_of_seqs 172 out of 351
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 08:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 5.4E-17 1.8E-21 122.6 6.6 72 36-108 5-77 (82)
2 1nkp_B MAX protein, MYC proto- 99.6 1E-15 3.4E-20 115.0 6.8 58 37-95 2-61 (83)
3 1nkp_A C-MYC, MYC proto-oncoge 99.6 1.1E-15 3.6E-20 117.2 6.6 77 37-128 6-85 (88)
4 4ati_A MITF, microphthalmia-as 99.6 2.4E-15 8.3E-20 120.7 7.0 87 36-134 26-116 (118)
5 1nlw_A MAD protein, MAX dimeri 99.5 3E-14 1E-18 107.6 7.7 71 38-109 2-75 (80)
6 1hlo_A Protein (transcription 99.5 1.8E-14 6.1E-19 107.8 5.5 66 36-102 11-78 (80)
7 4h10_B Circadian locomoter out 99.5 1.8E-14 6.3E-19 107.2 5.1 58 36-94 7-65 (71)
8 1an4_A Protein (upstream stimu 99.4 5.6E-14 1.9E-18 101.1 2.6 54 36-90 4-63 (65)
9 4h10_A ARYL hydrocarbon recept 99.3 3E-13 1E-17 100.8 2.1 53 36-89 8-64 (73)
10 1a0a_A BHLH, protein (phosphat 99.3 5E-13 1.7E-17 96.8 1.1 53 37-90 2-61 (63)
11 3u5v_A Protein MAX, transcript 99.2 7.5E-12 2.6E-16 93.9 3.8 58 36-94 4-65 (76)
12 4f3l_A Mclock, circadian locom 99.0 2.4E-10 8.2E-15 103.2 5.3 55 35-90 10-65 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 6.9E-10 2.4E-14 81.6 2.2 54 36-90 11-66 (68)
14 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.9E-09 6.6E-14 98.6 3.9 53 36-89 12-68 (387)
15 2ql2_B Neurod1, neurogenic dif 98.8 4.4E-09 1.5E-13 75.5 4.6 54 37-91 2-58 (60)
16 4ath_A MITF, microphthalmia-as 98.7 9.9E-08 3.4E-12 73.1 9.1 75 49-134 4-81 (83)
17 2lfh_A DNA-binding protein inh 98.2 5.6E-07 1.9E-11 66.6 2.6 47 41-88 18-67 (68)
18 2jee_A YIIU; FTSZ, septum, coi 97.4 0.00047 1.6E-08 52.5 7.6 61 76-136 15-75 (81)
19 4aya_A DNA-binding protein inh 97.0 0.00099 3.4E-08 52.2 5.2 57 40-97 28-87 (97)
20 3hnw_A Uncharacterized protein 95.9 0.032 1.1E-06 45.6 8.2 84 49-134 34-135 (138)
21 1gd2_E Transcription factor PA 94.9 0.02 6.9E-07 42.2 3.6 22 80-101 28-49 (70)
22 2jee_A YIIU; FTSZ, septum, coi 94.8 0.08 2.7E-06 40.2 6.6 55 80-134 5-66 (81)
23 2wt7_A Proto-oncogene protein 93.1 0.095 3.3E-06 37.2 4.0 31 81-111 23-53 (63)
24 3a7p_A Autophagy protein 16; c 92.6 0.38 1.3E-05 40.3 7.5 85 48-134 36-121 (152)
25 3qh9_A Liprin-beta-2; coiled-c 92.2 0.29 9.9E-06 37.2 5.7 58 78-135 23-80 (81)
26 1t2k_D Cyclic-AMP-dependent tr 92.1 0.16 5.3E-06 35.7 4.0 21 82-102 23-43 (61)
27 1jnm_A Proto-oncogene C-JUN; B 92.0 0.14 4.7E-06 36.1 3.6 31 81-111 22-52 (62)
28 2yy0_A C-MYC-binding protein; 91.8 0.098 3.3E-06 36.5 2.6 11 78-88 2-12 (53)
29 3he5_B Synzip2; heterodimeric 91.6 0.17 5.7E-06 34.8 3.4 42 86-127 8-49 (52)
30 2oqq_A Transcription factor HY 91.4 0.21 7.1E-06 33.7 3.7 35 81-115 3-37 (42)
31 1dh3_A Transcription factor CR 90.7 0.19 6.5E-06 35.0 3.1 30 81-110 22-51 (55)
32 3hnw_A Uncharacterized protein 90.0 0.65 2.2E-05 37.8 6.3 44 83-126 91-134 (138)
33 3cve_A Homer protein homolog 1 89.8 0.64 2.2E-05 34.5 5.5 54 84-137 3-56 (72)
34 3s9g_A Protein hexim1; cyclin 89.3 0.75 2.6E-05 36.2 5.9 61 69-133 29-96 (104)
35 3m9b_A Proteasome-associated A 88.4 0.38 1.3E-05 43.2 4.0 39 90-128 56-94 (251)
36 1t2k_D Cyclic-AMP-dependent tr 88.3 0.51 1.7E-05 33.0 3.9 36 97-132 24-59 (61)
37 3nmd_A CGMP dependent protein 88.0 0.49 1.7E-05 35.2 3.8 49 80-128 18-66 (72)
38 2wt7_A Proto-oncogene protein 87.5 1.8 6.2E-05 30.5 6.5 47 86-132 8-60 (63)
39 2dgc_A Protein (GCN4); basic d 86.4 0.55 1.9E-05 33.5 3.2 32 103-134 31-62 (63)
40 3q8t_A Beclin-1; autophagy, AT 86.4 1.3 4.6E-05 33.8 5.6 49 84-132 7-55 (96)
41 3i00_A HIP-I, huntingtin-inter 85.8 1.3 4.5E-05 35.4 5.5 48 74-128 33-80 (120)
42 3o0z_A RHO-associated protein 85.8 2 6.7E-05 36.5 6.8 76 48-129 63-138 (168)
43 2dgc_A Protein (GCN4); basic d 85.7 1.2 4.2E-05 31.6 4.8 31 80-110 29-59 (63)
44 3cvf_A Homer-3, homer protein 85.5 1.2 4.2E-05 33.4 4.9 52 85-136 10-61 (79)
45 3iv1_A Tumor susceptibility ge 85.2 3.7 0.00013 30.8 7.3 44 86-129 30-73 (78)
46 3ghg_A Fibrinogen alpha chain; 84.8 1.4 5E-05 43.3 6.3 80 55-137 86-190 (562)
47 3s4r_A Vimentin; alpha-helix, 84.3 4.1 0.00014 30.9 7.5 34 101-134 55-88 (93)
48 1jnm_A Proto-oncogene C-JUN; B 84.1 0.4 1.4E-05 33.7 1.5 30 104-133 24-53 (62)
49 3m9b_A Proteasome-associated A 83.6 0.67 2.3E-05 41.6 3.1 38 97-135 56-94 (251)
50 2fxo_A Myosin heavy chain, car 83.4 4 0.00014 32.2 7.3 56 74-129 62-124 (129)
51 3oja_B Anopheles plasmodium-re 83.2 1.8 6.1E-05 40.5 6.0 20 117-136 559-578 (597)
52 3mq7_A Bone marrow stromal ant 83.0 1.1 3.9E-05 36.2 3.9 9 40-48 10-18 (121)
53 1ci6_A Transcription factor AT 83.0 2.1 7.2E-05 30.3 5.0 20 112-131 33-52 (63)
54 3m91_A Proteasome-associated A 82.6 1.8 6.3E-05 30.0 4.4 41 82-129 10-50 (51)
55 4h22_A Leucine-rich repeat fli 82.4 2.4 8.2E-05 33.4 5.5 53 83-135 32-84 (103)
56 2fxo_A Myosin heavy chain, car 82.1 3.5 0.00012 32.6 6.5 59 76-134 57-115 (129)
57 3htk_A Structural maintenance 81.9 4.9 0.00017 27.3 6.5 49 84-132 8-56 (60)
58 2v71_A Nuclear distribution pr 81.5 4.1 0.00014 35.0 7.2 18 82-99 57-74 (189)
59 2w83_C C-JUN-amino-terminal ki 81.3 1.3 4.4E-05 33.3 3.4 36 99-134 34-69 (77)
60 3swf_A CGMP-gated cation chann 81.3 2.1 7.3E-05 31.9 4.6 50 84-136 3-52 (74)
61 1gd2_E Transcription factor PA 81.0 1.5 5.1E-05 32.1 3.7 37 98-134 32-68 (70)
62 3swy_A Cyclic nucleotide-gated 80.7 2.5 8.5E-05 28.8 4.4 44 85-131 2-45 (46)
63 2oxj_A Hybrid alpha/beta pepti 80.3 0.77 2.6E-05 29.6 1.7 13 83-95 3-15 (34)
64 2v66_B Nuclear distribution pr 80.2 3.7 0.00012 32.6 5.9 48 83-130 5-63 (111)
65 3swk_A Vimentin; cytoskeleton, 80.2 2.7 9.4E-05 31.5 5.0 35 100-134 47-81 (86)
66 1deb_A APC protein, adenomatou 80.1 3.5 0.00012 28.9 5.1 40 84-123 6-45 (54)
67 1hjb_A Ccaat/enhancer binding 80.1 1.4 4.6E-05 33.6 3.3 29 106-134 40-68 (87)
68 2eqb_B RAB guanine nucleotide 79.8 6.1 0.00021 30.7 7.0 58 76-133 7-64 (97)
69 3htk_A Structural maintenance 79.7 3.5 0.00012 28.1 5.1 49 79-127 10-58 (60)
70 3he5_A Synzip1; heterodimeric 79.7 2.5 8.6E-05 28.7 4.1 22 81-102 3-24 (49)
71 1go4_E MAD1 (mitotic arrest de 79.5 1.6 5.6E-05 34.1 3.7 34 102-135 12-45 (100)
72 1hjb_A Ccaat/enhancer binding 79.1 5.6 0.00019 30.1 6.5 23 85-107 40-62 (87)
73 4etp_A Kinesin-like protein KA 78.6 2.4 8.2E-05 39.5 5.2 51 84-134 6-56 (403)
74 2dfs_A Myosin-5A; myosin-V, in 78.5 4.1 0.00014 42.6 7.3 23 109-131 1023-1045(1080)
75 2dfs_A Myosin-5A; myosin-V, in 77.9 4.1 0.00014 42.6 7.1 19 116-134 1023-1041(1080)
76 1gu4_A CAAT/enhancer binding p 76.8 1.9 6.7E-05 32.1 3.2 30 105-134 39-68 (78)
77 2w6a_A ARF GTPase-activating p 76.7 2.3 7.7E-05 30.8 3.4 36 87-122 26-61 (63)
78 1gu4_A CAAT/enhancer binding p 76.4 7.9 0.00027 28.7 6.5 33 83-115 38-70 (78)
79 2v71_A Nuclear distribution pr 76.3 4.7 0.00016 34.6 5.9 22 89-110 50-71 (189)
80 3m91_A Proteasome-associated A 75.9 3.2 0.00011 28.7 3.9 20 114-133 28-47 (51)
81 3oja_B Anopheles plasmodium-re 75.9 13 0.00045 34.6 9.4 40 95-134 544-583 (597)
82 3ol1_A Vimentin; structural ge 75.8 7.1 0.00024 30.6 6.5 24 82-105 21-44 (119)
83 1ik9_A DNA repair protein XRCC 75.8 6.6 0.00023 33.9 6.8 29 76-104 127-155 (213)
84 3v86_A De novo design helix; c 75.7 1.4 4.9E-05 26.7 1.8 13 83-95 2-14 (27)
85 1go4_E MAD1 (mitotic arrest de 75.4 1.9 6.6E-05 33.7 3.0 54 81-134 12-86 (100)
86 1lwu_C Fibrinogen gamma chain; 75.0 2.8 9.6E-05 38.5 4.5 55 78-132 2-56 (323)
87 3m48_A General control protein 74.9 1.7 5.8E-05 27.9 2.1 14 84-97 3-16 (33)
88 1kd8_B GABH BLL, GCN4 acid bas 74.8 3.1 0.00011 27.1 3.4 20 83-102 3-22 (36)
89 3tnu_B Keratin, type II cytosk 74.4 13 0.00044 29.2 7.6 59 76-134 38-107 (129)
90 1zhc_A Hypothetical protein HP 74.3 5.9 0.0002 29.0 5.2 50 84-134 20-69 (76)
91 3ibp_A Chromosome partition pr 74.3 11 0.00038 34.6 8.1 75 45-130 22-104 (302)
92 1kd8_A GABH AIV, GCN4 acid bas 74.0 2.3 7.9E-05 27.7 2.6 16 83-98 3-18 (36)
93 2wt7_B Transcription factor MA 73.9 9.4 0.00032 29.2 6.5 35 100-134 53-87 (90)
94 3a5t_A Transcription factor MA 73.6 0.7 2.4E-05 36.5 0.1 41 89-129 59-99 (107)
95 3trt_A Vimentin; cytoskeleton, 73.5 4.8 0.00017 28.7 4.6 25 104-128 51-75 (77)
96 2eqb_B RAB guanine nucleotide 73.4 7.2 0.00025 30.3 5.8 50 85-134 9-58 (97)
97 3oja_A Leucine-rich immune mol 73.3 8.1 0.00028 35.5 7.2 26 108-133 441-466 (487)
98 3bas_A Myosin heavy chain, str 73.2 8.2 0.00028 28.8 5.9 20 115-134 62-81 (89)
99 3m48_A General control protein 73.1 1.7 5.8E-05 27.9 1.8 24 107-130 5-28 (33)
100 2dq0_A Seryl-tRNA synthetase; 73.1 13 0.00046 35.1 8.7 53 84-136 41-103 (455)
101 3d5a_X RF1, peptide chain rele 72.8 14 0.00048 34.5 8.6 83 49-136 5-96 (354)
102 2w83_C C-JUN-amino-terminal ki 72.6 5.7 0.0002 29.8 4.8 34 85-118 34-67 (77)
103 3qne_A Seryl-tRNA synthetase, 72.6 14 0.00046 35.7 8.7 34 103-136 72-105 (485)
104 3u06_A Protein claret segregat 72.0 5.9 0.0002 37.1 5.9 51 84-134 6-56 (412)
105 2oxj_A Hybrid alpha/beta pepti 71.6 3.6 0.00012 26.5 3.0 26 98-123 4-29 (34)
106 3a5t_A Transcription factor MA 71.3 0.5 1.7E-05 37.3 -1.2 58 77-134 30-97 (107)
107 3efg_A Protein SLYX homolog; x 71.2 4.8 0.00016 29.8 4.1 51 85-135 11-61 (78)
108 3na7_A HP0958; flagellar bioge 71.0 7.7 0.00026 33.5 6.1 8 122-129 103-110 (256)
109 2ocy_A RAB guanine nucleotide 71.0 8.7 0.0003 32.0 6.1 12 71-82 13-24 (154)
110 3a7p_A Autophagy protein 16; c 70.8 10 0.00034 31.7 6.5 85 50-135 42-136 (152)
111 1ses_A Seryl-tRNA synthetase; 69.9 16 0.00055 34.1 8.4 54 83-136 37-98 (421)
112 2v66_B Nuclear distribution pr 69.7 8.7 0.0003 30.4 5.6 58 76-133 30-87 (111)
113 2zvf_A Alanyl-tRNA synthetase; 69.6 6.8 0.00023 31.2 5.1 19 79-97 5-23 (171)
114 3o0z_A RHO-associated protein 69.4 13 0.00045 31.4 7.0 44 88-131 27-70 (168)
115 3c3f_A Alpha/beta peptide with 69.3 2.2 7.6E-05 27.5 1.7 14 83-96 3-16 (34)
116 1dh3_A Transcription factor CR 69.3 2.1 7.2E-05 29.6 1.7 31 103-133 23-53 (55)
117 1wle_A Seryl-tRNA synthetase; 69.3 10 0.00036 36.4 7.2 54 83-136 79-150 (501)
118 1nkp_B MAX protein, MYC proto- 69.1 4 0.00014 29.7 3.3 31 104-134 49-79 (83)
119 3c3g_A Alpha/beta peptide with 69.1 2.5 8.6E-05 27.1 1.9 15 83-97 2-16 (33)
120 2xdj_A Uncharacterized protein 68.7 11 0.00038 28.2 5.7 38 98-135 23-60 (83)
121 2yy0_A C-MYC-binding protein; 68.6 5 0.00017 27.7 3.5 29 104-132 21-49 (53)
122 3i00_A HIP-I, huntingtin-inter 68.5 23 0.0008 28.1 7.9 68 68-135 9-80 (120)
123 2oto_A M protein; helical coil 68.2 9.1 0.00031 30.9 5.6 25 84-108 53-77 (155)
124 3tnu_A Keratin, type I cytoske 68.0 15 0.00053 28.8 6.8 59 76-134 40-109 (131)
125 1wle_A Seryl-tRNA synthetase; 67.8 18 0.0006 34.9 8.4 57 80-136 69-143 (501)
126 3oja_A Leucine-rich immune mol 67.1 9.9 0.00034 34.9 6.3 54 82-135 422-475 (487)
127 2xdj_A Uncharacterized protein 67.0 16 0.00053 27.4 6.3 11 86-96 25-35 (83)
128 2dq3_A Seryl-tRNA synthetase; 66.0 15 0.00052 34.2 7.4 53 84-136 40-102 (425)
129 2j5u_A MREC protein; bacterial 66.0 1.3 4.3E-05 38.9 0.0 22 79-100 17-38 (255)
130 1zbt_A RF-1, peptide chain rel 65.9 8.2 0.00028 36.3 5.5 86 48-135 18-113 (371)
131 1nkp_A C-MYC, MYC proto-oncoge 65.6 5 0.00017 30.0 3.3 31 104-134 54-84 (88)
132 3c3g_A Alpha/beta peptide with 65.1 6.3 0.00022 25.2 3.1 25 99-123 4-28 (33)
133 2wq1_A General control protein 64.9 6.1 0.00021 25.3 3.0 19 83-101 2-20 (33)
134 1zhc_A Hypothetical protein HP 64.7 4 0.00014 29.9 2.6 43 81-124 24-66 (76)
135 3q8t_A Beclin-1; autophagy, AT 64.6 12 0.0004 28.5 5.3 15 119-133 70-84 (96)
136 2zqm_A Prefoldin beta subunit 64.6 31 0.0011 25.6 7.7 37 100-136 75-111 (117)
137 1jcd_A Major outer membrane li 64.3 13 0.00044 25.8 4.9 44 83-133 6-49 (52)
138 3u59_A Tropomyosin beta chain; 64.2 21 0.00072 26.9 6.6 41 77-117 19-59 (101)
139 1gk6_A Vimentin; intermediate 64.1 5.4 0.00018 27.8 3.0 47 84-130 3-49 (59)
140 1deq_A Fibrinogen (alpha chain 64.1 8 0.00027 36.6 5.1 46 81-126 113-158 (390)
141 1ic2_A Tropomyosin alpha chain 63.8 31 0.0011 24.9 7.3 53 78-130 17-69 (81)
142 3vmx_A Voltage-gated hydrogen 63.7 7.4 0.00025 26.8 3.5 40 88-134 4-43 (48)
143 2wt7_B Transcription factor MA 63.4 5.9 0.0002 30.3 3.4 32 103-134 49-80 (90)
144 2bni_A General control protein 63.0 3.6 0.00012 26.6 1.7 15 83-97 3-17 (34)
145 3trt_A Vimentin; cytoskeleton, 62.9 24 0.00083 24.9 6.5 53 82-134 10-74 (77)
146 4dzn_A Coiled-coil peptide CC- 62.6 7.8 0.00027 24.4 3.2 28 103-130 3-30 (33)
147 1uo4_A General control protein 62.6 4.8 0.00016 25.9 2.3 21 83-103 3-23 (34)
148 2v4h_A NF-kappa-B essential mo 62.4 28 0.00095 27.7 7.1 16 119-134 86-101 (110)
149 3u1c_A Tropomyosin alpha-1 cha 62.2 27 0.00093 26.5 7.0 30 78-107 20-49 (101)
150 1s94_A S-syntaxin; three helix 62.2 15 0.0005 29.9 5.8 25 113-137 78-102 (180)
151 2v4h_A NF-kappa-B essential mo 61.9 17 0.00059 28.8 5.9 22 112-133 86-107 (110)
152 1uix_A RHO-associated kinase; 61.5 18 0.00063 26.6 5.6 46 88-133 4-49 (71)
153 3u1c_A Tropomyosin alpha-1 cha 61.4 22 0.00074 27.0 6.3 7 123-129 58-64 (101)
154 2wq1_A General control protein 61.4 4.3 0.00015 26.0 1.9 24 99-122 4-27 (33)
155 1nlw_A MAD protein, MAX dimeri 61.4 5.8 0.0002 29.2 2.9 29 104-132 49-77 (80)
156 1wt6_A Myotonin-protein kinase 61.0 29 0.001 26.2 6.7 48 80-134 23-70 (81)
157 3s4r_A Vimentin; alpha-helix, 60.5 9.4 0.00032 28.9 4.0 52 83-134 25-81 (93)
158 3c3f_A Alpha/beta peptide with 60.4 8.5 0.00029 24.8 3.1 25 99-123 5-29 (34)
159 1m1j_C Fibrinogen gamma chain; 60.3 15 0.00051 34.7 6.2 56 72-134 75-130 (409)
160 3iv1_A Tumor susceptibility ge 60.0 26 0.0009 26.2 6.3 46 88-133 25-70 (78)
161 1i84_S Smooth muscle myosin he 59.6 17 0.00057 38.0 7.0 16 39-54 778-793 (1184)
162 2e7s_A RAB guanine nucleotide 59.1 29 0.00098 28.4 6.9 17 117-133 68-84 (135)
163 2hy6_A General control protein 59.1 6.5 0.00022 25.3 2.4 19 83-101 3-21 (34)
164 2bni_A General control protein 58.6 6.2 0.00021 25.4 2.3 26 98-123 4-29 (34)
165 3nmd_A CGMP dependent protein 58.5 16 0.00053 27.1 4.8 26 86-111 38-63 (72)
166 1l8d_A DNA double-strand break 57.8 39 0.0013 25.1 7.2 28 106-133 75-102 (112)
167 4b4t_K 26S protease regulatory 57.5 7 0.00024 36.7 3.4 34 101-134 55-88 (428)
168 1ic2_A Tropomyosin alpha chain 57.3 23 0.0008 25.7 5.6 23 111-133 43-65 (81)
169 3u06_A Protein claret segregat 57.2 12 0.00042 34.9 5.1 59 83-142 12-70 (412)
170 1kd8_A GABH AIV, GCN4 acid bas 56.8 11 0.00039 24.5 3.3 24 100-123 6-29 (36)
171 1uo4_A General control protein 56.7 5.3 0.00018 25.7 1.7 24 99-122 5-28 (34)
172 3sja_C Golgi to ER traffic pro 56.6 49 0.0017 23.9 7.1 54 79-134 4-57 (65)
173 1x8y_A Lamin A/C; structural p 56.3 16 0.00053 27.1 4.6 47 83-129 30-76 (86)
174 3he4_B Synzip5; heterodimeric 56.2 14 0.00049 24.6 3.8 19 83-101 5-23 (46)
175 4etp_A Kinesin-like protein KA 55.8 17 0.00057 33.8 5.7 64 79-143 8-71 (403)
176 1gk4_A Vimentin; intermediate 55.3 17 0.00057 26.7 4.6 42 85-126 30-71 (84)
177 1jcd_A Major outer membrane li 54.9 18 0.00061 25.1 4.3 22 104-125 13-34 (52)
178 1rq0_A RF-1, peptide chain rel 54.7 13 0.00045 34.5 4.7 66 64-136 14-80 (342)
179 3plt_A Sphingolipid long chain 54.3 95 0.0032 27.4 9.9 87 46-148 110-202 (234)
180 2no2_A HIP-I, huntingtin-inter 54.2 38 0.0013 26.2 6.6 19 76-94 24-42 (107)
181 2w6a_A ARF GTPase-activating p 54.2 16 0.00054 26.4 4.0 39 94-132 19-57 (63)
182 3vkg_A Dynein heavy chain, cyt 54.1 22 0.00077 41.6 7.3 77 57-134 2001-2095(3245)
183 1zme_C Proline utilization tra 53.1 8.2 0.00028 26.2 2.4 23 81-103 44-66 (70)
184 2ve7_C Kinetochore protein NUF 53.0 12 0.0004 32.8 4.0 56 75-134 125-180 (250)
185 1ik9_A DNA repair protein XRCC 53.0 25 0.00084 30.3 5.9 56 80-135 124-179 (213)
186 3ol1_A Vimentin; structural ge 52.8 46 0.0016 25.9 7.0 51 82-132 49-99 (119)
187 1uii_A Geminin; human, DNA rep 52.5 22 0.00076 26.9 4.8 26 97-122 48-73 (83)
188 1wlq_A Geminin; coiled-coil; 2 52.5 23 0.0008 26.8 5.0 26 97-122 40-65 (83)
189 1a93_B MAX protein, coiled coi 52.3 8.2 0.00028 24.9 2.1 24 104-127 9-32 (34)
190 1kd8_B GABH BLL, GCN4 acid bas 51.6 20 0.00067 23.3 3.8 23 100-122 6-28 (36)
191 2d4y_A HAP1, flagellar HOOK-as 51.4 24 0.00082 32.8 6.0 76 50-126 44-120 (463)
192 3vkg_A Dynein heavy chain, cyt 51.3 28 0.00094 40.9 7.5 23 112-134 2080-2102(3245)
193 3lay_A Zinc resistance-associa 51.1 38 0.0013 28.3 6.7 14 103-116 114-127 (175)
194 1gqe_A Release factor 2, RF2; 50.1 35 0.0012 31.9 6.8 85 44-130 22-115 (365)
195 1deq_A Fibrinogen (alpha chain 49.7 24 0.00081 33.5 5.6 42 52-93 65-107 (390)
196 2xv5_A Lamin-A/C; structural p 49.6 24 0.00082 25.8 4.6 47 84-130 8-54 (74)
197 1m1j_A Fibrinogen alpha subuni 49.4 19 0.00067 34.9 5.1 46 81-126 111-156 (491)
198 2oto_A M protein; helical coil 49.1 33 0.0011 27.5 5.8 13 86-98 27-39 (155)
199 4b4t_K 26S protease regulatory 48.9 12 0.00042 35.0 3.6 46 77-129 45-90 (428)
200 2ve7_A Kinetochore protein HEC 48.8 21 0.0007 32.1 4.9 28 89-116 186-213 (315)
201 2p2u_A HOST-nuclease inhibitor 48.7 56 0.0019 26.9 7.3 60 76-141 18-77 (171)
202 1s1c_X RHO-associated, coiled- 48.6 35 0.0012 25.1 5.2 31 85-115 3-33 (71)
203 3fx0_A NF-kappa-B essential mo 48.6 30 0.001 26.8 5.2 89 40-128 7-95 (96)
204 3tnu_B Keratin, type II cytosk 48.4 16 0.00054 28.6 3.7 59 76-134 31-93 (129)
205 2zxx_A Geminin; coiled-coil, c 47.9 30 0.001 25.9 4.9 28 96-123 35-62 (79)
206 3sjb_C Golgi to ER traffic pro 47.8 61 0.0021 24.9 6.8 55 78-134 20-74 (93)
207 3ni0_A Bone marrow stromal ant 47.4 74 0.0025 24.8 7.2 57 76-135 27-86 (99)
208 3a2a_A Voltage-gated hydrogen 47.3 13 0.00044 26.5 2.6 43 85-134 8-50 (58)
209 1l8d_A DNA double-strand break 47.2 74 0.0025 23.5 7.2 32 104-135 66-97 (112)
210 1fxk_A Prefoldin; archaeal pro 46.8 77 0.0026 23.1 7.2 26 107-132 70-95 (107)
211 2zqm_A Prefoldin beta subunit 46.4 24 0.00082 26.3 4.3 48 69-116 58-105 (117)
212 2dq0_A Seryl-tRNA synthetase; 45.8 45 0.0015 31.4 7.0 58 80-137 30-97 (455)
213 4h22_A Leucine-rich repeat fli 45.5 32 0.0011 27.0 4.9 49 86-134 28-76 (103)
214 2lw1_A ABC transporter ATP-bin 45.4 42 0.0014 24.6 5.4 17 85-101 26-42 (89)
215 3w03_C DNA repair protein XRCC 45.3 23 0.0008 30.2 4.5 17 82-98 146-162 (184)
216 3a7o_A Autophagy protein 16; c 45.1 78 0.0027 23.5 6.7 52 82-133 19-70 (75)
217 4emc_A Monopolin complex subun 45.1 28 0.00095 30.0 4.9 26 82-107 21-46 (190)
218 1gk4_A Vimentin; intermediate 44.9 67 0.0023 23.4 6.4 31 104-134 28-58 (84)
219 2zxx_A Geminin; coiled-coil, c 44.8 33 0.0011 25.7 4.7 32 76-107 29-60 (79)
220 3lay_A Zinc resistance-associa 44.3 34 0.0012 28.6 5.3 29 109-137 113-141 (175)
221 2ve7_A Kinetochore protein HEC 44.1 28 0.00097 31.2 5.1 33 98-130 181-213 (315)
222 3lss_A Seryl-tRNA synthetase; 43.9 44 0.0015 32.1 6.7 29 108-136 109-138 (484)
223 1lwu_C Fibrinogen gamma chain; 43.9 23 0.00078 32.5 4.5 48 88-135 5-52 (323)
224 3lss_A Seryl-tRNA synthetase; 43.3 70 0.0024 30.7 7.9 56 83-138 46-133 (484)
225 3mq9_A Bone marrow stromal ant 43.3 60 0.002 29.5 7.2 26 109-134 436-461 (471)
226 3qne_A Seryl-tRNA synthetase, 43.3 46 0.0016 32.0 6.7 58 82-139 41-101 (485)
227 4emc_A Monopolin complex subun 43.1 17 0.0006 31.3 3.4 37 83-119 29-65 (190)
228 2r2v_A GCN4 leucine zipper; co 43.1 23 0.00077 22.8 3.0 16 83-98 3-18 (34)
229 2wg5_A General control protein 42.9 16 0.00054 28.1 2.8 22 113-134 11-32 (109)
230 2wvr_A Geminin; DNA replicatio 42.0 45 0.0015 29.1 5.8 36 95-130 115-150 (209)
231 1joc_A EEA1, early endosomal a 42.0 56 0.0019 25.5 5.9 38 87-124 17-54 (125)
232 3jsv_C NF-kappa-B essential mo 41.8 46 0.0016 25.7 5.2 15 120-134 65-79 (94)
233 3efg_A Protein SLYX homolog; x 41.5 20 0.00067 26.4 3.0 47 90-136 9-55 (78)
234 2pnv_A Small conductance calci 41.4 33 0.0011 22.9 3.8 32 78-109 6-37 (43)
235 2qyw_A Vesicle transport throu 41.3 40 0.0014 25.5 4.8 57 70-132 45-101 (102)
236 4dci_A Uncharacterized protein 41.2 1E+02 0.0035 25.3 7.6 66 70-135 25-103 (150)
237 3gp4_A Transcriptional regulat 41.1 77 0.0026 24.9 6.7 43 92-134 85-127 (142)
238 2wuj_A Septum site-determining 41.0 32 0.0011 23.6 3.9 23 77-99 30-52 (57)
239 1uii_A Geminin; human, DNA rep 40.9 39 0.0013 25.6 4.6 28 76-103 41-68 (83)
240 3tnu_A Keratin, type I cytoske 40.7 35 0.0012 26.8 4.6 43 84-126 80-122 (131)
241 4aj5_K Spindle and kinetochore 40.4 86 0.0029 25.3 6.8 51 86-136 48-98 (123)
242 3ghg_A Fibrinogen alpha chain; 40.3 51 0.0017 32.6 6.5 38 100-137 122-159 (562)
243 1wt6_A Myotonin-protein kinase 40.2 41 0.0014 25.3 4.6 34 84-117 41-74 (81)
244 2wvr_A Geminin; DNA replicatio 40.2 34 0.0012 29.9 4.7 26 76-101 110-135 (209)
245 1wlq_A Geminin; coiled-coil; 2 40.1 40 0.0014 25.5 4.5 29 76-104 33-61 (83)
246 2p22_A Suppressor protein STP2 39.7 38 0.0013 28.5 4.9 24 107-130 61-84 (174)
247 3viq_B Mating-type switching p 39.6 72 0.0024 24.1 5.9 54 84-137 4-65 (85)
248 2dq3_A Seryl-tRNA synthetase; 39.6 56 0.0019 30.4 6.5 58 80-137 29-96 (425)
249 1fxk_A Prefoldin; archaeal pro 39.6 35 0.0012 25.0 4.2 59 54-113 36-97 (107)
250 4fla_A Regulation of nuclear P 39.3 95 0.0033 25.3 7.2 46 71-116 62-107 (152)
251 3oa7_A Head morphogenesis prot 39.3 41 0.0014 29.3 5.1 56 59-121 15-70 (206)
252 3onj_A T-snare VTI1; helix, HA 38.7 84 0.0029 23.4 6.3 25 110-134 66-91 (97)
253 3cve_A Homer protein homolog 1 38.4 71 0.0024 23.4 5.6 44 78-121 4-47 (72)
254 4aj5_1 SKA3, spindle and kinet 38.4 1E+02 0.0035 24.1 6.8 58 76-133 37-98 (101)
255 2wg5_A General control protein 38.3 14 0.00049 28.4 1.9 27 104-130 9-35 (109)
256 1dip_A Delta-sleep-inducing pe 37.9 11 0.00036 28.4 1.0 11 112-122 32-42 (78)
257 2lw1_A ABC transporter ATP-bin 37.4 47 0.0016 24.3 4.6 15 83-97 31-45 (89)
258 3he5_A Synzip1; heterodimeric 37.4 59 0.002 21.9 4.6 42 90-131 5-46 (49)
259 4b4t_M 26S protease regulatory 37.3 24 0.00083 33.1 3.7 43 92-134 29-71 (434)
260 3a6m_A Protein GRPE, HSP-70 co 37.2 3.8 0.00013 34.4 -1.7 31 94-124 18-48 (177)
261 1ses_A Seryl-tRNA synthetase; 37.1 54 0.0019 30.5 6.0 58 80-137 27-92 (421)
262 1fzc_C Fibrin; blood coagulati 36.9 15 0.0005 33.7 2.0 42 89-130 5-46 (319)
263 3ra3_B P2F; coiled coil domain 36.9 19 0.00065 21.9 1.9 20 114-133 5-24 (28)
264 2c5k_T Syntaxin TLG1, T-snare 36.9 32 0.0011 26.0 3.6 18 117-134 76-93 (95)
265 2er8_A Regulatory protein Leu3 36.6 25 0.00086 24.0 2.8 22 80-101 48-69 (72)
266 3w03_C DNA repair protein XRCC 36.2 35 0.0012 29.0 4.2 31 75-105 146-176 (184)
267 3rrk_A V-type ATPase 116 kDa s 35.9 74 0.0025 27.9 6.5 53 79-131 224-277 (357)
268 4gkw_A Spindle assembly abnorm 35.9 65 0.0022 26.7 5.5 53 79-134 96-158 (167)
269 2ihr_1 Peptide chain release f 35.9 32 0.0011 32.1 4.2 77 47-130 17-103 (365)
270 3mov_A Lamin-B1; LMNB1, B-type 35.5 50 0.0017 25.0 4.6 18 109-126 65-82 (95)
271 3l4q_C Phosphatidylinositol 3- 35.2 78 0.0027 26.6 6.1 44 86-129 101-144 (170)
272 3jsv_C NF-kappa-B essential mo 35.1 98 0.0033 23.9 6.1 23 112-134 64-86 (94)
273 2r2v_A GCN4 leucine zipper; co 34.9 21 0.0007 23.0 1.9 23 100-122 6-28 (34)
274 3qh9_A Liprin-beta-2; coiled-c 34.6 98 0.0034 23.3 5.9 34 102-135 33-66 (81)
275 3azd_A Short alpha-tropomyosin 34.5 24 0.00082 22.6 2.2 31 81-111 4-34 (37)
276 2ocy_A RAB guanine nucleotide 34.5 41 0.0014 27.9 4.2 28 76-103 96-123 (154)
277 1t3u_A Conserved hypothetical 34.5 1.1E+02 0.0037 22.6 6.3 36 49-87 32-67 (104)
278 1t3j_A Mitofusin 1; coiled coi 34.1 84 0.0029 24.2 5.6 46 82-131 48-93 (96)
279 3vlc_E Golgi to ER traffic pro 34.1 20 0.00069 27.7 2.1 55 77-133 26-80 (94)
280 2xnx_M M protein, M1-BC1; cell 34.1 1E+02 0.0035 25.5 6.4 18 117-134 88-105 (146)
281 3mq9_A Bone marrow stromal ant 33.8 80 0.0027 28.6 6.5 25 110-134 444-468 (471)
282 3mud_A DNA repair protein XRCC 33.6 59 0.002 27.6 5.1 22 76-97 130-151 (175)
283 1fxk_C Protein (prefoldin); ar 33.4 71 0.0024 24.4 5.3 19 76-97 86-104 (133)
284 2dnx_A Syntaxin-12; snare, HAB 33.4 90 0.0031 24.4 5.9 52 85-136 48-104 (130)
285 4e61_A Protein BIM1; EB1-like 32.7 36 0.0012 26.8 3.4 26 85-110 15-40 (106)
286 3oa7_A Head morphogenesis prot 32.7 50 0.0017 28.8 4.6 44 87-130 29-72 (206)
287 2ve7_C Kinetochore protein NUF 32.6 53 0.0018 28.6 4.8 59 70-128 137-195 (250)
288 3vp9_A General transcriptional 32.5 80 0.0027 24.1 5.2 52 81-132 40-91 (92)
289 4b4t_J 26S protease regulatory 32.5 25 0.00085 33.0 2.9 39 89-134 26-64 (405)
290 2hy6_A General control protein 32.3 40 0.0014 21.6 2.9 23 100-122 6-28 (34)
291 1fmh_A General control protein 31.9 48 0.0016 20.8 3.2 25 84-108 4-28 (33)
292 3q4f_C DNA repair protein XRCC 31.8 38 0.0013 29.1 3.6 20 81-100 161-180 (186)
293 3kin_B Kinesin heavy chain; mo 31.8 35 0.0012 26.6 3.2 29 106-134 86-114 (117)
294 3bbp_D GRIP and coiled-coil do 31.7 28 0.00097 25.7 2.4 10 119-128 53-62 (71)
295 3rrk_A V-type ATPase 116 kDa s 31.5 1.4E+02 0.0048 26.2 7.5 10 54-63 70-79 (357)
296 2p22_A Suppressor protein STP2 31.3 93 0.0032 26.2 5.9 39 90-128 51-89 (174)
297 1dip_A Delta-sleep-inducing pe 31.2 12 0.00042 28.0 0.4 25 101-125 14-38 (78)
298 1hs7_A Syntaxin VAM3; UP-and-D 31.1 73 0.0025 24.4 4.8 10 124-133 65-74 (97)
299 4h62_K Mediator of RNA polymer 30.9 26 0.00087 22.8 1.9 21 49-69 16-36 (40)
300 2xnx_M M protein, M1-BC1; cell 30.8 27 0.00093 28.9 2.5 53 82-134 74-126 (146)
301 1x8y_A Lamin A/C; structural p 30.7 43 0.0015 24.7 3.4 25 109-133 35-59 (86)
302 2aze_B Transcription factor E2 30.7 51 0.0018 25.4 4.0 32 104-135 8-39 (106)
303 2aze_B Transcription factor E2 30.5 52 0.0018 25.3 4.0 36 82-117 7-42 (106)
304 3vbb_A Seryl-tRNA synthetase, 30.2 78 0.0027 30.8 6.0 25 113-137 109-133 (522)
305 1gmj_A ATPase inhibitor; coile 29.9 79 0.0027 23.9 4.7 8 53-60 39-46 (84)
306 3hhm_B NISH2 P85alpha; PI3KCA, 29.9 71 0.0024 29.5 5.4 46 85-130 209-254 (373)
307 1lq7_A Alpha3W; three helix bu 29.7 1.5E+02 0.0051 21.0 6.0 51 83-133 4-65 (67)
308 3cvf_A Homer-3, homer protein 29.6 71 0.0024 23.8 4.4 43 79-121 11-53 (79)
309 2zdi_C Prefoldin subunit alpha 29.5 70 0.0024 25.2 4.7 47 76-132 96-142 (151)
310 2i1j_A Moesin; FERM, coiled-co 29.4 13 0.00045 36.1 0.4 8 124-131 406-413 (575)
311 3q0x_A Centriole protein; cent 28.4 1.1E+02 0.0036 26.9 6.0 64 70-133 160-223 (228)
312 4ani_A Protein GRPE; chaperone 28.2 51 0.0017 28.5 3.9 21 82-102 67-87 (213)
313 2zvf_A Alanyl-tRNA synthetase; 27.9 58 0.002 25.7 4.0 10 54-63 14-23 (171)
314 1hs7_A Syntaxin VAM3; UP-and-D 27.8 1.4E+02 0.0049 22.7 6.0 22 114-135 69-90 (97)
315 1m1j_C Fibrinogen gamma chain; 27.4 1.5E+02 0.0052 27.8 7.3 12 52-63 36-47 (409)
316 3a7o_A Autophagy protein 16; c 27.2 63 0.0021 24.0 3.6 26 98-123 49-74 (75)
317 1am9_A Srebp-1A, protein (ster 27.1 49 0.0017 24.0 3.1 23 112-134 53-75 (82)
318 2zdi_C Prefoldin subunit alpha 27.0 51 0.0018 26.1 3.5 38 100-137 103-140 (151)
319 1j1d_B Troponin T, TNT; THIN f 26.7 1.2E+02 0.0042 23.5 5.5 12 48-59 26-37 (106)
320 2w6b_A RHO guanine nucleotide 26.2 90 0.0031 22.0 4.2 20 82-101 11-30 (56)
321 1m1j_A Fibrinogen alpha subuni 26.0 3.7E+02 0.013 26.1 9.7 84 54-137 65-160 (491)
322 3edu_A Beta-I spectrin, spectr 25.7 2.3E+02 0.0078 22.6 7.3 44 44-94 78-121 (218)
323 2b3t_B RF-1, peptide chain rel 25.6 29 0.00099 32.4 2.0 84 50-134 10-98 (360)
324 4b4t_M 26S protease regulatory 25.0 25 0.00085 33.1 1.4 34 100-133 30-63 (434)
325 2efr_A General control protein 24.9 1.9E+02 0.0065 23.8 6.6 17 81-97 98-114 (155)
326 2xv5_A Lamin-A/C; structural p 24.6 1.4E+02 0.0049 21.5 5.3 48 87-134 4-51 (74)
327 3gpv_A Transcriptional regulat 24.5 1.6E+02 0.0055 23.1 6.0 27 107-133 100-126 (148)
328 1fxk_C Protein (prefoldin); ar 24.4 85 0.0029 24.0 4.2 20 84-103 4-23 (133)
329 3pxg_A Negative regulator of g 24.2 55 0.0019 30.1 3.6 17 114-130 425-441 (468)
330 2lw9_A Unconventionnal myosin- 24.1 41 0.0014 23.3 2.1 21 115-135 5-25 (51)
331 3k29_A Putative uncharacterize 24.1 2.7E+02 0.0091 23.5 7.5 41 54-98 55-95 (169)
332 2aze_A Transcription factor DP 23.9 76 0.0026 26.4 4.0 28 104-131 7-34 (155)
333 3gp4_A Transcriptional regulat 23.9 1.8E+02 0.0061 22.7 6.1 30 102-131 88-117 (142)
334 1lrz_A FEMA, factor essential 23.7 1.4E+02 0.0048 27.0 6.2 22 81-102 247-268 (426)
335 1x4t_A Hypothetical protein LO 23.7 2.3E+02 0.0078 21.7 6.4 25 110-134 53-77 (92)
336 1e91_A Paired amphipathic heli 23.7 41 0.0014 24.8 2.2 62 74-135 5-79 (85)
337 1m1j_B Fibrinogen beta chain; 23.6 4.4E+02 0.015 25.2 9.8 23 114-136 173-195 (464)
338 4dnd_A Syntaxin-10, SYN10; str 23.4 2.3E+02 0.0077 22.4 6.6 28 80-107 66-93 (130)
339 1pd7_B MAD1; PAH2, SIN3, eukar 23.3 96 0.0033 18.8 3.3 21 70-90 2-22 (26)
340 3vmx_A Voltage-gated hydrogen 23.2 1.2E+02 0.0041 20.7 4.2 26 83-108 13-38 (48)
341 4b4t_J 26S protease regulatory 23.2 64 0.0022 30.2 3.9 39 84-122 28-66 (405)
342 2j5u_A MREC protein; bacterial 22.9 40 0.0014 29.3 2.3 19 92-110 23-41 (255)
343 4e61_A Protein BIM1; EB1-like 22.9 67 0.0023 25.2 3.3 25 86-110 9-33 (106)
344 3viq_B Mating-type switching p 22.7 51 0.0018 24.9 2.5 20 114-133 6-25 (85)
345 3l4q_C Phosphatidylinositol 3- 22.6 2.1E+02 0.0072 24.0 6.6 57 79-135 101-157 (170)
346 2j69_A Bacterial dynamin-like 22.5 77 0.0026 31.1 4.4 37 96-132 360-396 (695)
347 2e7s_A RAB guanine nucleotide 22.2 89 0.003 25.4 4.0 22 77-98 85-106 (135)
348 3onj_A T-snare VTI1; helix, HA 22.1 1.1E+02 0.0037 22.8 4.3 58 71-128 31-92 (97)
349 1zxa_A CGMP-dependent protein 22.0 41 0.0014 24.4 1.8 24 104-127 27-50 (67)
350 3mtu_A Tropomyosin alpha-1 cha 21.9 2.2E+02 0.0077 20.4 5.9 49 88-136 9-64 (75)
351 3c9i_A Tail needle protein GP2 21.9 2.6E+02 0.0087 24.7 7.1 58 75-132 78-135 (242)
352 1a93_A Coiled coil, LZ, MYC pr 21.5 51 0.0018 21.1 2.0 29 100-128 5-33 (34)
353 3edv_A Spectrin beta chain, br 21.2 2.7E+02 0.0093 23.3 7.2 83 46-134 85-170 (323)
354 3s9g_A Protein hexim1; cyclin 21.1 2.1E+02 0.0072 22.4 5.8 25 85-109 34-58 (104)
355 3ghg_C Fibrinogen gamma chain; 21.1 1.8E+02 0.0061 27.5 6.5 47 76-122 79-125 (411)
356 2z5i_A TM, general control pro 21.0 1.7E+02 0.0059 19.7 4.8 22 77-98 8-29 (52)
357 2oie_A RS21-C6; helix, hydrola 20.9 1.9E+02 0.0066 21.3 5.5 10 85-94 44-53 (111)
358 1deb_A APC protein, adenomatou 20.7 91 0.0031 21.7 3.3 35 98-132 6-40 (54)
359 1xkm_B Distinctin chain B; por 20.4 1.2E+02 0.004 18.1 3.2 19 73-91 3-21 (26)
360 2lf0_A Uncharacterized protein 20.3 1.2E+02 0.004 24.5 4.3 47 83-131 12-58 (123)
361 3s84_A Apolipoprotein A-IV; fo 20.0 3.2E+02 0.011 23.9 7.5 17 50-66 128-144 (273)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.67 E-value=5.4e-17 Score=122.56 Aligned_cols=72 Identities=29% Similarity=0.344 Sum_probs=65.4
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVNQ-PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVT 108 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~-~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~ 108 (241)
.|+.+|+..||+||++||++|.+|+++| |+. .|+||++||.+||+||+.|+.+++.|+.++..|..++...+
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lv-P~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLV-VGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678899999999999999999999998 765 89999999999999999999999999999988887766554
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.60 E-value=1e-15 Score=114.99 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=52.8
Q ss_pred CccchhhHHHhhHHHhhHhHHHhhhccCCC--CCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 026212 37 KRVHKAEREKLKREHLNDLFLDLANAVEVN--QPNNGKACVLNEAARLLKDLFSQIESLNK 95 (241)
Q Consensus 37 rk~~Ka~rER~RRdkLNerF~~L~slL~P~--~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~ 95 (241)
|+..|+.+||+||++||+.|.+|+++| |. ..|.+|++||.+||+||+.|+.+++.|+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lv-P~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSV-PSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-GGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999998 65 27999999999999999999999988864
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=1.1e-15 Score=117.17 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=64.3
Q ss_pred CccchhhHHHhhHHHhhHhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhh
Q 026212 37 KRVHKAEREKLKREHLNDLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNE 113 (241)
Q Consensus 37 rk~~Ka~rER~RRdkLNerF~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKne 113 (241)
++.+|+.+||+||++||+.|..|+++| |+. .|.+|++||.+||+||+.|+.+.+.|..+ ++.
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~v-P~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~--------------~~~ 70 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQI-PELENNEKAPKVVILKKATAYILSVQAEEQKLISE--------------EDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-GGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 567899999999999999999999998 864 59999999999999999999998888654 445
Q ss_pred hhhhhhhhHHHHHHH
Q 026212 114 LKEENSSLESQIEVL 128 (241)
Q Consensus 114 LRdEk~~Lk~e~e~L 128 (241)
|+.++..|+.++..|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666666555
No 4
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.58 E-value=2.4e-15 Score=120.68 Aligned_cols=87 Identities=17% Similarity=0.255 Sum_probs=51.6
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCCC----CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhh
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVNQ----PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEK 111 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~----~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK 111 (241)
.++..|+..||+||++||++|.+|+++| |+. .|++|++||.+||+||+.|+.+++.|+++.. +.
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lv-P~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~-----------~~ 93 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLI-PKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN-----------RQ 93 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHS-CCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH-hhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Confidence 4778999999999999999999999998 643 4889999999999999999999999986433 23
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..|+.++..|...|..||.|.++
T Consensus 94 ~~l~~~n~~L~~riqeLE~~a~~ 116 (118)
T 4ati_A 94 KKLEHANRHLLLRVQELEMQARA 116 (118)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888776553
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.51 E-value=3e-14 Score=107.62 Aligned_cols=71 Identities=21% Similarity=0.144 Sum_probs=58.7
Q ss_pred ccchhhHHHhhHHHhhHhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHH
Q 026212 38 RVHKAEREKLKREHLNDLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTI 109 (241)
Q Consensus 38 k~~Ka~rER~RRdkLNerF~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~ 109 (241)
+.+|+..||.||++||+.|..|+++| |.. .|.+|++||..||+||++|+.+.++|..+++.|..+...|..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~v-P~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLV-PLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS-CCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999988 743 688999999999999999999998887655554444444433
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=1.8e-14 Score=107.77 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=59.4
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCCC--CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVNQ--PNNGKACVLNEAARLLKDLFSQIESLNKENASLLS 102 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~--~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~e 102 (241)
.++..|+.+||+||+.||+.|.+|+++| |.. .|.+|++||..||+||+.|+.++++|+.+++.|..
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lv-P~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSV-PSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHC-cCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999998 654 69999999999999999999999999887776654
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.49 E-value=1.8e-14 Score=107.23 Aligned_cols=58 Identities=24% Similarity=0.342 Sum_probs=52.3
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVNQ-PNNGKACVLNEAARLLKDLFSQIESLN 94 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~-~K~DKasIL~DAI~ylk~Lr~~v~~Lk 94 (241)
.++..|+..||+||+++|++|.+|+++| |+. .|+||++||.+||+||++|+.++.=|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~Lv-P~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSML-PGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhC-CCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4678899999999999999999999998 654 799999999999999999999887553
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=5.6e-14 Score=101.07 Aligned_cols=54 Identities=19% Similarity=0.414 Sum_probs=48.3
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCCC------CCCchhhhHHHHHHHHHHHHHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVNQ------PNNGKACVLNEAARLLKDLFSQI 90 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~------~K~DKasIL~DAI~ylk~Lr~~v 90 (241)
.|+..|+..||+||++||+.|.+|+++| |.. .|+||++||.+||+||++|+.+.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lv-P~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKII-PDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHS-CCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHC-cCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999998 643 27899999999999999998764
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.33 E-value=3e-13 Score=100.82 Aligned_cols=53 Identities=26% Similarity=0.300 Sum_probs=47.4
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCC----CCCCchhhhHHHHHHHHHHHHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVN----QPNNGKACVLNEAARLLKDLFSQ 89 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~----~~K~DKasIL~DAI~ylk~Lr~~ 89 (241)
.|+..|...||+||+++|+.|.+|+++| |. ..|+|||+||..||.||+.|+.-
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~Lv-P~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLV-PTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHc-cccccccccccHHHHHHHHHHHHHHHhcC
Confidence 4678899999999999999999999998 63 27999999999999999998743
No 10
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.28 E-value=5e-13 Score=96.81 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=47.5
Q ss_pred CccchhhHHHhhHHHhhHhHHHhhhccCCC-------CCCCchhhhHHHHHHHHHHHHHHH
Q 026212 37 KRVHKAEREKLKREHLNDLFLDLANAVEVN-------QPNNGKACVLNEAARLLKDLFSQI 90 (241)
Q Consensus 37 rk~~Ka~rER~RRdkLNerF~~L~slL~P~-------~~K~DKasIL~DAI~ylk~Lr~~v 90 (241)
||..|...||+||+++|+.|.+|+++| |+ ..+.+||+||..||+||++|+.++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~Ll-P~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLI-PAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTS-CHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 577899999999999999999999998 63 357789999999999999998765
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.20 E-value=7.5e-12 Score=93.86 Aligned_cols=58 Identities=24% Similarity=0.367 Sum_probs=47.4
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCC---CCCC-chhhhHHHHHHHHHHHHHHHHHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVN---QPNN-GKACVLNEAARLLKDLFSQIESLN 94 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~---~~K~-DKasIL~DAI~ylk~Lr~~v~~Lk 94 (241)
-|+..|+.+||+||+.||+.|.+|+.+| |. ..|. .|++||..||+||+.|+.++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~v-P~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMC-QMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHc-CCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667899999999999999999999998 63 2354 688999999999999999999875
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.00 E-value=2.4e-10 Score=103.17 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=42.3
Q ss_pred CCCccchhhHHHhhHHHhhHhHHHhhhccCC-CCCCCchhhhHHHHHHHHHHHHHHH
Q 026212 35 VPKRVHKAEREKLKREHLNDLFLDLANAVEV-NQPNNGKACVLNEAARLLKDLFSQI 90 (241)
Q Consensus 35 ~~rk~~Ka~rER~RRdkLNerF~~L~slL~P-~~~K~DKasIL~DAI~ylk~Lr~~v 90 (241)
..++..|+..||+|||++|+.|.+|+++| | +..|+||++||..||.||+.|+...
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~-p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSML-PGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTC-CSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhC-CCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 34566788999999999999999999998 7 4589999999999999999997643
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.85 E-value=6.9e-10 Score=81.64 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=48.5
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCCCC--CCCchhhhHHHHHHHHHHHHHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEVNQ--PNNGKACVLNEAARLLKDLFSQI 90 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P~~--~K~DKasIL~DAI~ylk~Lr~~v 90 (241)
.++..++.+||+|+..||+.|..|+.+| |.. .|.+|+.||-.||+||..|+..+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~i-P~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRST-SSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS-CSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999998 753 69999999999999999998754
No 14
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.81 E-value=1.9e-09 Score=98.63 Aligned_cols=53 Identities=26% Similarity=0.283 Sum_probs=48.1
Q ss_pred CCccchhhHHHhhHHHhhHhHHHhhhccCC----CCCCCchhhhHHHHHHHHHHHHHH
Q 026212 36 PKRVHKAEREKLKREHLNDLFLDLANAVEV----NQPNNGKACVLNEAARLLKDLFSQ 89 (241)
Q Consensus 36 ~rk~~Ka~rER~RRdkLNerF~~L~slL~P----~~~K~DKasIL~DAI~ylk~Lr~~ 89 (241)
.+|..|+..||+|||++|+.|.+|+++| | ...|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~-p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLV-PTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3567899999999999999999999998 7 568999999999999999999854
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.79 E-value=4.4e-09 Score=75.49 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=47.9
Q ss_pred CccchhhHHHhhHHHhhHhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHHHHH
Q 026212 37 KRVHKAEREKLKREHLNDLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFSQIE 91 (241)
Q Consensus 37 rk~~Ka~rER~RRdkLNerF~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~~v~ 91 (241)
|+..++.+||.|+..||+.|..|+.+| |.. .|..|+.||--||.||..|+..++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~l-P~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVV-PCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-SSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHc-cCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999998 754 599999999999999999987653
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.68 E-value=9.9e-08 Score=73.06 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=59.0
Q ss_pred HHHhhHhHHHhhhccCCC---CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 49 REHLNDLFLDLANAVEVN---QPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 49 RdkLNerF~~L~slL~P~---~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
|+.+|++|.+|+.+|+++ ..|..|++||..|++||+.|+.++++++++.. ....|...|..|---|
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~-----------r~k~le~~n~~l~~ri 72 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRV 72 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhhhhHHHHHHH
Confidence 789999999999998433 26899999999999999999999988876443 2334566777777777
Q ss_pred HHHHHHHHH
Q 026212 126 EVLQSELRA 134 (241)
Q Consensus 126 e~Le~qlk~ 134 (241)
..||-|.++
T Consensus 73 qELE~qa~~ 81 (83)
T 4ath_A 73 QELEMQARA 81 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.20 E-value=5.6e-07 Score=66.60 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=42.5
Q ss_pred hhhHHHhhHHHhhHhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHH
Q 026212 41 KAEREKLKREHLNDLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFS 88 (241)
Q Consensus 41 Ka~rER~RRdkLNerF~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~ 88 (241)
-+++||+|...||+-|..|+.+| |.. .|..|.-||--||.||..|+.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~V-P~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELV-PGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHC-CCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 45999999999999999999998 764 589999999999999999974
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.43 E-value=0.00047 Score=52.47 Aligned_cols=61 Identities=30% Similarity=0.353 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+..||+.|.-|+-++++||..|..|.++..++...+..|++||..|+.|...++..|..-+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999999999999999999999999999999999999999999998765
No 19
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=96.96 E-value=0.00099 Score=52.18 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=45.2
Q ss_pred chhhHHHhhHHHhhHhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHHhh
Q 026212 40 HKAEREKLKREHLNDLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFSQIESLNKEN 97 (241)
Q Consensus 40 ~Ka~rER~RRdkLNerF~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n 97 (241)
+...+||.|=..+|+-|..|+..| |.. .|..|.-||--||.||..|+.-++.-...+
T Consensus 28 ~~~~~~r~Rm~~lN~AF~~LR~~v-P~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~ 87 (97)
T 4aya_A 28 TPVDDPMSLLYNMNDCYSKLKELV-PSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPS 87 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHC-TTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred cccccHHHHHHHHHHHHHHHHHHC-CCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 335566778888999999999998 753 589999999999999999998876644333
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.88 E-value=0.032 Score=45.56 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=52.8
Q ss_pred HHHhhHhHHHhhhc--cCCCCCCCchhhhHHH---HHH------HHHHHHHHHH-------HHHHhhhccchhhhHHHHh
Q 026212 49 REHLNDLFLDLANA--VEVNQPNNGKACVLNE---AAR------LLKDLFSQIE-------SLNKENASLLSESHYVTIE 110 (241)
Q Consensus 49 RdkLNerF~~L~sl--L~P~~~K~DKasIL~D---AI~------ylk~Lr~~v~-------~Lk~~n~~L~ees~~L~~E 110 (241)
-..+|+++.+++.. - |.. ..++++||.- |=+ -+.+|+.+++ .|+.+...++.++..++.+
T Consensus 34 A~~vd~km~ei~~~~~~-~~l-~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 34 ASYINNKITEFNKEESY-RRM-SAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHTTCHHH-HTS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999864 3 333 6678887752 112 2223334444 4444555556666777777
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 111 KNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 111 KneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..+|++++..|..++-+||..+..
T Consensus 112 ~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 112 IKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777777654
No 21
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=94.94 E-value=0.02 Score=42.16 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 026212 80 ARLLKDLFSQIESLNKENASLL 101 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ 101 (241)
-.||++|..+|..|+..+..|.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~ 49 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTT 49 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999998887666543
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.80 E-value=0.08 Score=40.21 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhh-------hHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSS-------LESQIEVLQSELRA 134 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~-------Lk~e~e~Le~qlk~ 134 (241)
.+++.+|.++|+.+=+.+.-|+.++.+|+.+.+.|.+++.. |..|+.+|.++...
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 36788899999998888888888888887777777777776 55566666666543
No 23
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=93.11 E-value=0.095 Score=37.18 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhh
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEK 111 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK 111 (241)
.++.+|..+++.|+.+|..|..++..|..|+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655555555444443333
No 24
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.38 Score=40.31 Aligned_cols=85 Identities=15% Similarity=0.045 Sum_probs=42.2
Q ss_pred hHHHhhHhHHHhhhccCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 48 KREHLNDLFLDLANAVEVNQ-PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 48 RRdkLNerF~~L~slL~P~~-~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
-|+++--+|.+|-.- |+. ..-.=+|=+.+-+..|..|+.++..|+..+..|.+++++-..-...|+||...|..+..
T Consensus 36 ~Rd~~E~~~~~l~~e--~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 36 DRNDKEAHLNELFQD--NSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN 113 (152)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHh--hccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777664 332 11102233344455677777777777777777776666655555568888888887777
Q ss_pred HHHHHHHH
Q 026212 127 VLQSELRA 134 (241)
Q Consensus 127 ~Le~qlk~ 134 (241)
-+++.++.
T Consensus 114 ~lE~kl~k 121 (152)
T 3a7p_A 114 VLQQKLSD 121 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 25
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=92.16 E-value=0.29 Score=37.19 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+-|.=|++||-+|.+|+.+.-.-.-+++..+.|...|+.....=.+||++|+.||.++
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~~ 80 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSRT 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 5678899999999999987777777788888888888888888888999999988654
No 26
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=92.13 E-value=0.16 Score=35.65 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhhccch
Q 026212 82 LLKDLFSQIESLNKENASLLS 102 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~e 102 (241)
|+.+|+.+++.|+.+|..|..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 27
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=91.99 E-value=0.14 Score=36.11 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhh
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEK 111 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK 111 (241)
.++.+|..+|+.|+.+|..|..++..|..|.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666555554444443333
No 28
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=91.80 E-value=0.098 Score=36.48 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 026212 78 EAARLLKDLFS 88 (241)
Q Consensus 78 DAI~ylk~Lr~ 88 (241)
||++||++-..
T Consensus 2 ~AlefIk~~LG 12 (53)
T 2yy0_A 2 SALDFLKHHLG 12 (53)
T ss_dssp -----------
T ss_pred cHHHHHHHHcC
Confidence 67888877643
No 29
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=91.55 E-value=0.17 Score=34.83 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
||..+..|+..|-.|+..-..|..-...||||..+|+.|...
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999998888777677777777788888888777643
No 30
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=91.40 E-value=0.21 Score=33.71 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhh
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELK 115 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLR 115 (241)
.||.+|+.++.+|+..|..|++++..|..|-.=||
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 49999999999999999999988888766644444
No 31
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=90.65 E-value=0.19 Score=35.00 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHh
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIE 110 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~E 110 (241)
.||.+|..+|..|+.+|..|..++..|+.+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888777777777666666666544
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.01 E-value=0.65 Score=37.77 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
+-+|+.++..++..++.+..++..|+.+.++|+.++..|.++.+
T Consensus 91 ~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 91 IYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555555554443
No 33
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=89.77 E-value=0.64 Score=34.48 Aligned_cols=54 Identities=11% Similarity=0.208 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
+.+..++++++..|..|++.+..|.....+-+.+-.+++.|+.++..+|-..+.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~ 56 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIF 56 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 457788888999999999999999888888888888899999888888876653
No 34
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=89.32 E-value=0.75 Score=36.25 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=41.4
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccch-------hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLS-------ESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~e-------es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.+.|.-++-+-+ +|...++.|+++|..|+. .+++|..|...|+.||+.|..|-+-+.++=+
T Consensus 29 ~mSKqELIqEYl----~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~~ 96 (104)
T 3s9g_A 29 NMSKQELIKEYL----ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQER 96 (104)
T ss_dssp TSCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hccHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 456666555544 567777777777776665 6777777877888888888777766655533
No 35
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=88.36 E-value=0.38 Score=43.17 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=20.8
Q ss_pred HHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 90 IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 90 v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
+.+|+.++..|.++.++|+.+.+++|+|..+||.|+++|
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555543
No 36
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.25 E-value=0.51 Score=32.99 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=19.6
Q ss_pred hhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 97 NASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 97 n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
...|+.++..|+.+..+|+.+...|+.|+..|.++|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555443
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.96 E-value=0.49 Score=35.16 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
+.-|.+|+..+++-.++....++.|++|..+..+..++...|+.++.++
T Consensus 18 mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 18 RGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3448888888888888888888888888888888888888888777766
No 38
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.55 E-value=1.8 Score=30.45 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=21.1
Q ss_pred HHHHHHHHHHh------hhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 86 LFSQIESLNKE------NASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 86 Lr~~v~~Lk~~------n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
.+.++...++. ...|+.++..|+.+..+|+.+...|..|+..|...|
T Consensus 8 erNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 8 ERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445444443 233444444444444444444444444444444443
No 39
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=86.42 E-value=0.55 Score=33.49 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=17.3
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+.+|..+..+|..+|..|+.+++.|.++|..
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555555566666666666666666543
No 40
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=86.36 E-value=1.3 Score=33.82 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
..|..+++.|+.+-..|.+++..|..++..|..+...|+.+.+.|..+=
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE 55 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence 5567777777777777777777777777777777777777777776543
No 41
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=85.76 E-value=1.3 Score=35.40 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
.|..++-+||.+|+.+|..|+.+.+.- ...+.+.++|+..|+.+.+.|
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~e~-------r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLAEQ-------QHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666544321 223444555566666555544
No 42
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.75 E-value=2 Score=36.46 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=50.5
Q ss_pred hHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 48 KREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 48 RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
-|+.|-.-+..|.+.|+--+ . -..-+-+.+.+|..++..|..+.+.+.+....+..++..|-|....|..++.+
T Consensus 63 ~k~~Leke~~~LQa~L~qEr-----~-~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~ 136 (168)
T 3o0z_A 63 SKSQTDKDYYQLQAILEAER-----R-DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNN 136 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666552111 1 13445567778888888888888777777777777777777777777777777
Q ss_pred HH
Q 026212 128 LQ 129 (241)
Q Consensus 128 Le 129 (241)
++
T Consensus 137 ~e 138 (168)
T 3o0z_A 137 LE 138 (168)
T ss_dssp HH
T ss_pred hh
Confidence 77
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=85.69 E-value=1.2 Score=31.64 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHh
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIE 110 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~E 110 (241)
..++.+|..+|+.|+.+|..|..++..|+.+
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888777766666554
No 44
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=85.48 E-value=1.2 Score=33.43 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
.+..+++.++..|..|++.++.|.....+-+.+-.+++.|+.++.++|-..+
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSL 61 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3556778888888888888888888888888888888888888888877655
No 45
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=85.22 E-value=3.7 Score=30.83 Aligned_cols=44 Identities=23% Similarity=0.155 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
|+.--++|+.....|.+-+..|..|.++|......|+...+.|+
T Consensus 30 LrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 30 LKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555444443
No 46
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.77 E-value=1.4 Score=43.28 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=58.3
Q ss_pred hHHHhhhccCCCCCCCchhhhHHHHHHHHH-HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHH--------
Q 026212 55 LFLDLANAVEVNQPNNGKACVLNEAARLLK-DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQI-------- 125 (241)
Q Consensus 55 rF~~L~slL~P~~~K~DKasIL~DAI~ylk-~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~-------- 125 (241)
.|..+-.+| +.+...+.-+..++.-|. +|+.+++.|+.+...-...++.|+.-..+++.+.++|+.+|
T Consensus 86 y~k~~~E~L---r~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 86 LTTNIMEIL---RGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHTT---SSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHH---HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444 233333334444554455 99999999998887766889999999999999999999988
Q ss_pred ----------------HHHHHHHHHHHh
Q 026212 126 ----------------EVLQSELRARVV 137 (241)
Q Consensus 126 ----------------e~Le~qlk~r~~ 137 (241)
+.+|.||.+..+
T Consensus 163 gsCsr~~~~~vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 163 GSCSRALAREVDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp GTBSCCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred ccccchheeecchHHHHHHHHHHHHHhh
Confidence 468889988775
No 47
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.31 E-value=4.1 Score=30.87 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=23.3
Q ss_pred chhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 101 LSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 101 ~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+.++..|.....++.-|+.+|..|+.+|+..+..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666777777777777777776654
No 48
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=84.10 E-value=0.4 Score=33.69 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=14.2
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
+.+|..+..+|..+|..|+.++..|+.++.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555544443
No 49
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=83.56 E-value=0.67 Score=41.56 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=27.8
Q ss_pred hhccchhhhHHHHhhhh-hhhhhhhhHHHHHHHHHHHHHH
Q 026212 97 NASLLSESHYVTIEKNE-LKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 97 n~~L~ees~~L~~EKne-LRdEk~~Lk~e~e~Le~qlk~r 135 (241)
...|+.++..|. ++|+ |.++...++.|+.+|+.|++..
T Consensus 56 l~eL~~ql~~L~-arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 56 IHQLEARIDSLA-ARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666664 4455 8888889999999999999883
No 50
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.39 E-value=4 Score=32.25 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchh-------hhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSE-------SHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ee-------s~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
..+.|+-+.+..|..+-..|+.....+.++ ...|..+|..|.++...|+.+++.++
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655555555444444443 34444444444444444444444443
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.15 E-value=1.8 Score=40.55 Aligned_cols=20 Identities=5% Similarity=0.200 Sum_probs=9.7
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk~r~ 136 (241)
....|+.|...+.++++..+
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555544
No 52
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.01 E-value=1.1 Score=36.15 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=3.7
Q ss_pred chhhHHHhh
Q 026212 40 HKAEREKLK 48 (241)
Q Consensus 40 ~Ka~rER~R 48 (241)
+++|..=.|
T Consensus 10 SeAC~dGLr 18 (121)
T 3mq7_A 10 SEAARDGLR 18 (121)
T ss_dssp -CHHHHHHH
T ss_pred cHHHHHHHH
Confidence 445544443
No 53
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=83.00 E-value=2.1 Score=30.26 Aligned_cols=20 Identities=30% Similarity=0.541 Sum_probs=7.9
Q ss_pred hhhhhhhhhhHHHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~q 131 (241)
.+|..+|..|+.+++.|+.+
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333
No 54
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=82.57 E-value=1.8 Score=29.96 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
-+.+|+.++..|...|..|.+ ...+-|++...|+.++++|.
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~-------~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLME-------TLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Confidence 345667777777766665554 44556777788888887763
No 55
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=82.40 E-value=2.4 Score=33.42 Aligned_cols=53 Identities=19% Similarity=0.148 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
|.-|+..++++++.+..++.+.++...+...++-....|+.++..|+.+|+.|
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777788888888888888888888888999999999999999987
No 56
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=82.10 E-value=3.5 Score=32.60 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|..-...+.+.......|......|...++++.....+..+.+..|.+++.+|++++..
T Consensus 57 L~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 57 VQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777788888888899999999999888889888888888888887754
No 57
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=81.93 E-value=4.9 Score=27.32 Aligned_cols=49 Identities=18% Similarity=0.156 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
.+|...+.+++.....+..+...++...+++..+......+|.+++.|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333444444444444444444444455555554444
No 58
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.47 E-value=4.1 Score=34.97 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 026212 82 LLKDLFSQIESLNKENAS 99 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~ 99 (241)
-+++|+.++..|+.+...
T Consensus 57 ~~~~L~~~~~~L~~E~e~ 74 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEA 74 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 59
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=81.26 E-value=1.3 Score=33.32 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=20.8
Q ss_pred ccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 99 SLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 99 ~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.|-.++.+|+.|+.-|+.|..++..-+.+++..++.
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666655543
No 60
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=81.26 E-value=2.1 Score=31.90 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
++|+++|++|+...+.|+.+..-|..| ...-..+||..|.+||.+++...
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaE---y~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAE---YESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcccC
Confidence 468889999999999999888777766 45566789999999999999754
No 61
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=81.02 E-value=1.5 Score=32.09 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=24.7
Q ss_pred hccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 98 ASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 98 ~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..|+.++..|..+...|..||..|+.++..|..++..
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556556566777777888888888777764
No 62
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=80.68 E-value=2.5 Score=28.81 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
+|+++|++|+...+.|+.+..-|..| ...-..+||.-|.+||.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 57788888888888887776666555 344556777777777765
No 63
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=80.34 E-value=0.77 Score=29.65 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNK 95 (241)
Q Consensus 83 lk~Lr~~v~~Lk~ 95 (241)
+.||+.+|++|-.
T Consensus 3 MnQLE~kVEeLl~ 15 (34)
T 2oxj_A 3 MXQLEXKVXELLX 15 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555543
No 64
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.20 E-value=3.7 Score=32.61 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhccchh-----------hhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSE-----------SHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ee-----------s~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.++|+..++.|+.+.+.+..+ +..|..|...||+++..|+..|-.||+
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444443332 233444444445555444444444443
No 65
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=80.20 E-value=2.7 Score=31.45 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=23.3
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+.++..|+....++-=-+..|..+++.|..++.-
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666677788888888877753
No 66
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=80.08 E-value=3.5 Score=28.91 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
.||-.||+.|+.+|..|..|...-....+.|..|..-+|.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence 4788999999999988876655544444444444444443
No 67
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=80.07 E-value=1.4 Score=33.58 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=16.6
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 106 YVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 106 ~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++..+..+|..||..|+.+|+.|+.++..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666553
No 68
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.80 E-value=6.1 Score=30.72 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
|.++-.-|.+|+.++...+.+...|..+...-...+.+...++..+..|++.|-..|-
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666655555555555556666677777777666554
No 69
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=79.74 E-value=3.5 Score=28.09 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
.-+++.++.+++..++.....+...+..+....+..+++...++.+|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777778888888888888888888999999999999888864
No 70
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.71 E-value=2.5 Score=28.66 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhhccch
Q 026212 81 RLLKDLFSQIESLNKENASLLS 102 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~e 102 (241)
.++.+|+.+|..|+.+|+.|..
T Consensus 3 nlvaqlenevaslenenetlkk 24 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHH
Confidence 3678999999999999987764
No 71
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=79.52 E-value=1.6 Score=34.10 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=27.8
Q ss_pred hhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 102 SESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 102 ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
++...|+.+..+|+.|+.+|+.+|+.|+-+|-.+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888999999999988874
No 72
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=79.11 E-value=5.6 Score=30.14 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhhccchhhhHH
Q 026212 85 DLFSQIESLNKENASLLSESHYV 107 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L 107 (241)
++..+++.|+.+|..|..++..|
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444433
No 73
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.59 E-value=2.4 Score=39.50 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+|+.+++.|+.+...|+++++.++.+..+|.+.........-+|.++++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777666666655555555556666655
No 74
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=78.52 E-value=4.1 Score=42.65 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=13.0
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHH
Q 026212 109 IEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 109 ~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
...+.|++||+.|+.+++.|+.+
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666643
No 75
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.90 E-value=4.1 Score=42.64 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=9.4
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 026212 116 EENSSLESQIEVLQSELRA 134 (241)
Q Consensus 116 dEk~~Lk~e~e~Le~qlk~ 134 (241)
+....|+.|+.+|++|+..
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555543
No 76
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=76.77 E-value=1.9 Score=32.06 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=18.9
Q ss_pred hHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 105 HYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 105 ~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.++..+..+|..||..|+.+|+.|+.++..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666677777777777666655
No 77
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=76.72 E-value=2.3 Score=30.78 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhH
Q 026212 87 FSQIESLNKENASLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 87 r~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
+++|+.|-.-|..|.+|++-+..+...|..||..|+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 456777777777777777777777777777776665
No 78
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=76.41 E-value=7.9 Score=28.73 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhh
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELK 115 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLR 115 (241)
..++..++..|+.+|..|..++..|+.|...|+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777666666655555554
No 79
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.30 E-value=4.7 Score=34.59 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=8.3
Q ss_pred HHHHHHHhhhccchhhhHHHHh
Q 026212 89 QIESLNKENASLLSESHYVTIE 110 (241)
Q Consensus 89 ~v~~Lk~~n~~L~ees~~L~~E 110 (241)
+++.++..+..|+.....|+.|
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E 71 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYE 71 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 80
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=75.94 E-value=3.2 Score=28.71 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=9.9
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le~qlk 133 (241)
|-+-....+.+|.+|..+|.
T Consensus 28 L~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 28 LMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555544
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.88 E-value=13 Score=34.61 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=24.0
Q ss_pred HhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 95 KENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 95 ~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+...++.+++.-+....++++|++.++.|+..|++.+..
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444445555556666777777777777777776665
No 82
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=75.83 E-value=7.1 Score=30.58 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhhccchhhh
Q 026212 82 LLKDLFSQIESLNKENASLLSESH 105 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~ 105 (241)
||.+||.+|..+..++..|.-++.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leld 44 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERD 44 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444333
No 83
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=75.79 E-value=6.6 Score=33.89 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSES 104 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees 104 (241)
++=++.-+.+|+.++..|..+|..|+.+.
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~ 155 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDW 155 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555544444444333
No 84
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=75.66 E-value=1.4 Score=26.66 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNK 95 (241)
Q Consensus 83 lk~Lr~~v~~Lk~ 95 (241)
+-+|+.+|-+|+-
T Consensus 2 vyqlkdevgelkg 14 (27)
T 3v86_A 2 VYQLKDEVGELKG 14 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHh
Confidence 3445555544443
No 85
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=75.43 E-value=1.9 Score=33.68 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhh--hhh-------------------hhhhhHHHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNE--LKE-------------------ENSSLESQIEVLQSELRA 134 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKne--LRd-------------------Ek~~Lk~e~e~Le~qlk~ 134 (241)
+-+..|+.+|+.|+.++..|.+++..|..+.-. |+- -....+.++++|+.++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~er 86 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECER 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888887777777777666554422 332 223567888888877653
No 86
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=75.02 E-value=2.8 Score=38.49 Aligned_cols=55 Identities=7% Similarity=0.078 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
++|.=++.|++++.+|+.......+++..|......++...+.|+.+|..|+..+
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777788777766666666666666665555555555555555555443
No 87
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=74.88 E-value=1.7 Score=27.89 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhh
Q 026212 84 KDLFSQIESLNKEN 97 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n 97 (241)
+||+.+|++|-.+|
T Consensus 3 ~QLE~kVEeLl~~n 16 (33)
T 3m48_A 3 AQLEAKVEELLSKN 16 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh
Confidence 44555555444333
No 88
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=74.80 E-value=3.1 Score=27.10 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhccch
Q 026212 83 LKDLFSQIESLNKENASLLS 102 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~e 102 (241)
++||+.+|++|..++..|+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~ 22 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKN 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHH
Confidence 56777777776554444433
No 89
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.36 E-value=13 Score=29.18 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHH-----------HhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVT-----------IEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~-----------~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+.+.-+.|..|+.+++.|+..+..|+..+.++. .....|..+...++.++.+.-.+++.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 107 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQE 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555566667777777777777777765554432 33344555555555665555555543
No 90
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=74.29 E-value=5.9 Score=28.96 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..|..+-..|..++..++....-.. +..+|+-++..||-+|.++-.+.+.
T Consensus 20 ~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 20 DKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444455444444433222122 4555666666666666666555443
No 91
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=74.27 E-value=11 Score=34.56 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=55.1
Q ss_pred HHhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHH-------HHHHHhh-hccchhhhHHHHhhhhhhh
Q 026212 45 EKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQI-------ESLNKEN-ASLLSESHYVTIEKNELKE 116 (241)
Q Consensus 45 ER~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v-------~~Lk~~n-~~L~ees~~L~~EKneLRd 116 (241)
-|.+++.|+.++..|.+.- | +--.|-..|.+|+++. +.+...+ ..|..+ ++++.+++++-.
T Consensus 22 lr~~~eql~~~i~~L~~~a-p---------~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a~ 90 (302)
T 3ibp_A 22 LRQEQEQLQSRIQSLMQRA-P---------VWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLERE-REAIVERDEVGA 90 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-h---------HHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4678889999999988853 3 4555666677777765 3443333 445555 889999999999
Q ss_pred hhhhhHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQS 130 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~ 130 (241)
.+..|..+|++|-+
T Consensus 91 ~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 91 RKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999876
No 92
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=74.04 E-value=2.3 Score=27.73 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhhh
Q 026212 83 LKDLFSQIESLNKENA 98 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~ 98 (241)
++||..+|++|-.++.
T Consensus 3 MnQLE~kVEeLl~~~~ 18 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVW 18 (36)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhH
Confidence 4566666666654333
No 93
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=73.87 E-value=9.4 Score=29.21 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=21.3
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|+.+...|..++..|+.|+..+..|++.+.+.+..
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666553
No 94
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=73.63 E-value=0.7 Score=36.51 Aligned_cols=41 Identities=37% Similarity=0.401 Sum_probs=17.4
Q ss_pred HHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 89 QIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 89 ~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
++..|+.++..|+.+...|..|...|+.|...+|...+.|.
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 95
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=73.47 E-value=4.8 Score=28.71 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=12.0
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
++..+.|.+|||...++|..|++.|
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344445555555555555554443
No 96
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.44 E-value=7.2 Score=30.34 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.|+.++..|+.++.....+...|..+..+-+........++.+++++|..
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444444444444444444444555555555544
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.34 E-value=8.1 Score=35.45 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=13.3
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 108 TIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 108 ~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
..+-+.|++|+.+|+.+++++..++.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 33444455555555555555555544
No 98
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.19 E-value=8.2 Score=28.78 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=10.7
Q ss_pred hhhhhhhHHHHHHHHHHHHH
Q 026212 115 KEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 115 RdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+...+|...+-.|+.+|+-
T Consensus 62 Ee~~~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 62 EDKVEELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555543
No 99
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=73.13 E-value=1.7 Score=27.90 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=12.9
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 107 VTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 107 L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
|.....+|..+|..|+.|+.+|..
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444555555556666665554
No 100
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=73.09 E-value=13 Score=35.07 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhhccch----------hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLS----------ESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~e----------es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
++|+.+++.|+.+...+.. +...|+.+..+|+++...|+.+...++.++...+
T Consensus 41 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 41 RTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544433333 3456677777788888888888888888887765
No 101
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=72.84 E-value=14 Score=34.46 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=47.5
Q ss_pred HHHhhHhHHHhhhcc-CCCC-CCCchhhh-------HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhh
Q 026212 49 REHLNDLFLDLANAV-EVNQ-PNNGKACV-------LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENS 119 (241)
Q Consensus 49 RdkLNerF~~L~slL-~P~~-~K~DKasI-------L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~ 119 (241)
=+.+.++|.+|...+ +|+. ...+++.- |.+.+..+++|+...+.|+.-.+-+.. ..-+.+..+|..
T Consensus 5 l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D-----~e~~~~a~~e~~ 79 (354)
T 3d5a_X 5 LDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDD-----PELKEMAKAERE 79 (354)
T ss_dssp HHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHH
Confidence 356778888887754 3543 33344433 333344444444444444332222210 112345678899
Q ss_pred hhHHHHHHHHHHHHHHH
Q 026212 120 SLESQIEVLQSELRARV 136 (241)
Q Consensus 120 ~Lk~e~e~Le~qlk~r~ 136 (241)
.|+.+++.|+.+|+..+
T Consensus 80 ~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 80 ALLARKEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999865
No 102
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=72.62 E-value=5.7 Score=29.82 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhh
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEEN 118 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk 118 (241)
+|-.+|++|-.+++.|+.|+..+.+-+..++...
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554444444443333333
No 103
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=72.58 E-value=14 Score=35.70 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=25.9
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+...|..+..+|+++...|+.+...++.++...+
T Consensus 72 ~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 72 DAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777888888888888888888888754
No 104
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.96 E-value=5.9 Score=37.14 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..|+.++.+|+++...|+++++.+..|..++.++......+.-+|.++++.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~ 56 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMD 56 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777777777777777666666666666666665
No 105
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=71.56 E-value=3.6 Score=26.51 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=17.7
Q ss_pred hccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 98 ASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 98 ~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
..|++++.+|..++++|.+|..+|+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44666677777777777777776664
No 106
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=71.25 E-value=0.5 Score=37.34 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHH----------HhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESLN----------KENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk----------~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+-+..||+.|.....=. .+...|+.+...|..++..|..|+..|+.|++.+..+++.
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~ 97 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEA 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC--
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777665543221 1223344455555555566666666666666555555444
No 107
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=71.19 E-value=4.8 Score=29.77 Aligned_cols=51 Identities=10% Similarity=0.020 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+|..++.+|+....-.+.-+.+|....-+-..+..+|+.++..|..+++.+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777766666666666666666666666666666666666666553
No 108
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.01 E-value=7.7 Score=33.49 Aligned_cols=8 Identities=0% Similarity=0.003 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 026212 122 ESQIEVLQ 129 (241)
Q Consensus 122 k~e~e~Le 129 (241)
+.++..++
T Consensus 103 ~~~i~~lE 110 (256)
T 3na7_A 103 KERSNQAN 110 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 109
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.97 E-value=8.7 Score=32.01 Aligned_cols=12 Identities=25% Similarity=0.183 Sum_probs=5.9
Q ss_pred chhhhHHHHHHH
Q 026212 71 GKACVLNEAARL 82 (241)
Q Consensus 71 DKasIL~DAI~y 82 (241)
+|.|.|.|....
T Consensus 13 n~qs~LeD~L~~ 24 (154)
T 2ocy_A 13 DKQSHLEEQLNK 24 (154)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhhccHHHHHHH
Confidence 445555555433
No 110
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.82 E-value=10 Score=31.69 Aligned_cols=85 Identities=26% Similarity=0.227 Sum_probs=43.3
Q ss_pred HHhhHhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHHh-------hhccchhhhHHHHhhhhhhhhhh
Q 026212 50 EHLNDLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFSQIESLNKE-------NASLLSESHYVTIEKNELKEENS 119 (241)
Q Consensus 50 dkLNerF~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~-------n~~L~ees~~L~~EKneLRdEk~ 119 (241)
.++++.|.+++....|+. -++.. ..+.+--.-+..|+.++..|+.+ ++.|+.|+-.|..+-|.+.+...
T Consensus 42 ~~~~~l~~e~~~~~~~~~vs~~~~~~-~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 42 AHLNELFQDNSGAIGGNIVSHDDALL-NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLS 120 (152)
T ss_dssp ---------------CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCcccccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888988887643311 12221 23444445566777777777744 45577788888888888888888
Q ss_pred hhHHHHHHHHHHHHHH
Q 026212 120 SLESQIEVLQSELRAR 135 (241)
Q Consensus 120 ~Lk~e~e~Le~qlk~r 135 (241)
.|+.|=..|=+.+=.+
T Consensus 121 kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 121 DLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888776665554433
No 111
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=69.92 E-value=16 Score=34.07 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhhccc--------hhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLL--------SESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~--------ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
-++|+.+++.|+.+...+. ++...|+.+..+|+++...|+.+...++.++...+
T Consensus 37 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 37 VQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554443333 33456778888888888888888888888888765
No 112
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=69.72 E-value=8.7 Score=30.42 Aligned_cols=58 Identities=9% Similarity=0.109 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
..++-.-+..|+.++..|...+..|+..++.|.+.=++|....-.--+=++.++..|-
T Consensus 30 ~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 30 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 4566777888889999999988888888888888777776655544444455554443
No 113
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=69.63 E-value=6.8 Score=31.24 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026212 79 AARLLKDLFSQIESLNKEN 97 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n 97 (241)
|++|+.+....+.++....
T Consensus 5 A~~~~~~~~~~l~~~a~~L 23 (171)
T 2zvf_A 5 AIEAVEEMERLLREASSIL 23 (171)
T ss_dssp GTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5566666666666555433
No 114
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=69.37 E-value=13 Score=31.37 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 88 SQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 88 ~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
+.+.+|+..+..+.-.+..+....+||+|-...|...+..|+++
T Consensus 27 E~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke 70 (168)
T 3o0z_A 27 DTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKD 70 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334443333333333333333344444444444433333333
No 115
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=69.33 E-value=2.2 Score=27.49 Aligned_cols=14 Identities=7% Similarity=0.273 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHh
Q 026212 83 LKDLFSQIESLNKE 96 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~ 96 (241)
++||+.+|++|-.+
T Consensus 3 MnQLEdKVEeLl~~ 16 (34)
T 3c3f_A 3 MXQIEXKLEXILSX 16 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 45666665555433
No 116
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=69.28 E-value=2.1 Score=29.62 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=23.6
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
-+.+|..+...|..||..|+.++..|++++.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566667777888888888888888877653
No 117
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=69.26 E-value=10 Score=36.45 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhhccchhh------------------hHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSES------------------HYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees------------------~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
.++|+.+++.|+.+...+..+| ..|+.+..+|+++...|+.+...++.++...+
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666655444444333 34555556666666666666666777777654
No 118
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.14 E-value=4 Score=29.71 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=19.6
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|+.|..+..+|..|+..|+.+.+.|+++|.+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666654
No 119
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=69.09 E-value=2.5 Score=27.09 Aligned_cols=15 Identities=7% Similarity=0.324 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhh
Q 026212 83 LKDLFSQIESLNKEN 97 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n 97 (241)
++||+.+|++|-.+|
T Consensus 2 MnQLEdKvEeLl~~~ 16 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKX 16 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh
Confidence 456666665554333
No 120
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=68.70 E-value=11 Score=28.19 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=24.3
Q ss_pred hccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 98 ASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 98 ~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
-.|+..+..|..|..+||.....+.-+++.+.++-+.+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666667776666667776666655554
No 121
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.62 E-value=5 Score=27.70 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=13.1
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+..|+.|..+|+.+...|+.+++.|..+|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 122
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.52 E-value=23 Score=28.07 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=48.2
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhhh----ccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 68 PNNGKACVLNEAARLLKDLFSQIESLNKENA----SLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 68 ~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~----~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.+.+|-.++..=.+-|..|+.+++.++.+.. .|...+..|..|..+-|..++....|.+.|..++...
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655555666667777777765443 3666777888888888888888888889999988864
No 123
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=68.16 E-value=9.1 Score=30.85 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVT 108 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~ 108 (241)
..|..+++.|+..|..|+++.+.+.
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 124
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.03 E-value=15 Score=28.83 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHH-----------HhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVT-----------IEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~-----------~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+.+.-+.|..|+.+++.|+..+..|+..+.++. .....|..+...++.++.+.-.+++.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777766665544432 23334555555555555555555543
No 125
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=67.79 E-value=18 Score=34.88 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhh------------------hhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKN------------------ELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKn------------------eLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+.-|.+|-++-.+|..+.+.|+.+.+.+..+.. +|+.+...|+.++..|+.++...-
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666555543322 344455556666666666666543
No 126
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.11 E-value=9.9 Score=34.88 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+.++++.+.++.+...+..++++..++.|++.++.+...+..+|+.-.+.||.-
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 455555555555566666777888888888888888888888888888877763
No 127
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=67.00 E-value=16 Score=27.37 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 026212 86 LFSQIESLNKE 96 (241)
Q Consensus 86 Lr~~v~~Lk~~ 96 (241)
|..+++.|+.+
T Consensus 25 Lq~Ql~~Lq~E 35 (83)
T 2xdj_A 25 LQQQLSDNQSD 35 (83)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 128
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=65.99 E-value=15 Score=34.24 Aligned_cols=53 Identities=26% Similarity=0.455 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhccchh----------hhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSE----------SHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ee----------s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
++|+.+++.|+.+...+..+ ...|+.+..+|+++...|+.+...++.++...+
T Consensus 40 r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 40 REIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444443333 345566667777777777888888888887765
No 129
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=65.95 E-value=1.3 Score=38.92 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 026212 79 AARLLKDLFSQIESLNKENASL 100 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L 100 (241)
.+..+.+|+++.++|+.+|..|
T Consensus 17 ~~~~~~~l~~eN~~Lk~e~~~l 38 (255)
T 2j5u_A 17 GVVDLKNTYTENQHLKERLEEL 38 (255)
T ss_dssp ---------CTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 130
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=65.92 E-value=8.2 Score=36.26 Aligned_cols=86 Identities=10% Similarity=0.150 Sum_probs=48.0
Q ss_pred hHHHhhHhHHHhhhcc-CCCC-CC-------CchhhhHHHHHHHHHHHHHHHHHHHHhhhccch-hhhHHHHhhhhhhhh
Q 026212 48 KREHLNDLFLDLANAV-EVNQ-PN-------NGKACVLNEAARLLKDLFSQIESLNKENASLLS-ESHYVTIEKNELKEE 117 (241)
Q Consensus 48 RRdkLNerF~~L~slL-~P~~-~K-------~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~e-es~~L~~EKneLRdE 117 (241)
+-+.+.++|.+|-..+ +|+. .. +...+-|.+.+..+.+|+...+.++.-.+-+.+ +... .-+.++.+|
T Consensus 18 ~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~--e~~~~a~~e 95 (371)
T 1zbt_A 18 QLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDP--ELEEMAKEE 95 (371)
T ss_dssp HHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHH
Confidence 4456778888887743 4432 12 233466677777777777666666654443332 1110 123456788
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 026212 118 NSSLESQIEVLQSELRAR 135 (241)
Q Consensus 118 k~~Lk~e~e~Le~qlk~r 135 (241)
...|+.+++.|+.+|+..
T Consensus 96 ~~~l~~~l~~le~~l~~l 113 (371)
T 1zbt_A 96 LKNSKVAKEEYEEKLRFL 113 (371)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999999974
No 131
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=65.56 E-value=5 Score=29.99 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=22.7
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|++|..+...+..++..|+.+...|..+|+.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777788777777777765
No 132
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=65.08 E-value=6.3 Score=25.24 Aligned_cols=25 Identities=0% Similarity=-0.015 Sum_probs=15.0
Q ss_pred ccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 99 SLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 99 ~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
.|+++..+|..++.+|.+|..+||.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3555566666666666666666553
No 133
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=64.89 E-value=6.1 Score=25.31 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 026212 83 LKDLFSQIESLNKENASLL 101 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ 101 (241)
++||+.+|++|-.++..|+
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4566666666644433333
No 134
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=64.71 E-value=4 Score=29.87 Aligned_cols=43 Identities=26% Similarity=0.214 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQ 124 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e 124 (241)
+-..+|-.+|..|+....... ++..|+.+|=.|+||..++-..
T Consensus 24 ~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~ 66 (76)
T 1zhc_A 24 EKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIE 66 (76)
T ss_dssp HHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHH
Confidence 344556666666655444333 5666666666666666555444
No 135
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=64.63 E-value=12 Score=28.51 Aligned_cols=15 Identities=13% Similarity=0.525 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHHH
Q 026212 119 SSLESQIEVLQSELR 133 (241)
Q Consensus 119 ~~Lk~e~e~Le~qlk 133 (241)
..+..+...|+.|+.
T Consensus 70 ~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 70 LELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 136
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.55 E-value=31 Score=25.61 Aligned_cols=37 Identities=14% Similarity=0.338 Sum_probs=23.2
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
|..+...+..+...|......+..++..|+.+|..++
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666777777777777764
No 137
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=64.28 E-value=13 Score=25.80 Aligned_cols=44 Identities=7% Similarity=0.096 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
|.+|-.+|+.|.. ++..|..+.+.||.+...-|.|-.+-.+.|-
T Consensus 6 i~~Lss~V~~L~~-------kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 6 ADQASSDAQTANA-------KADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555555544 4444445555566666666666666655543
No 138
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=64.15 E-value=21 Score=26.92 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhh
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEE 117 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdE 117 (241)
..|+.-..++..++..++..+..+.+++..|+.....|.++
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554444444433333333
No 139
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=64.12 E-value=5.4 Score=27.81 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
++++..+..|+.+...+..++.....|-.+|-+=|.+|..||..-..
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45566666666666666666666667777888888888888865443
No 140
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.10 E-value=8 Score=36.62 Aligned_cols=46 Identities=20% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
+|..+|+.++.-|+.....-...++.|+.-..+++.+.++|+.+|+
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555788888888876554333788888888888888888887763
No 141
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.83 E-value=31 Score=24.95 Aligned_cols=53 Identities=9% Similarity=0.031 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.|..-+.++..++...+..+..+.+++..|+.....|.++...+.......+.
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333333333333
No 142
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=63.71 E-value=7.4 Score=26.82 Aligned_cols=40 Identities=28% Similarity=0.285 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 88 SQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 88 ~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.++.+|++.|..|-.++.+|..- -..++.||++|+.-|+.
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~-------c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFS-------CSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHHHH
Confidence 46778888888777666665443 44455777777777665
No 143
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=63.39 E-value=5.9 Score=30.35 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=17.9
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+...|..++.+|..+...|+.|...+..++..
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555666555555555443
No 144
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=63.04 E-value=3.6 Score=26.55 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhh
Q 026212 83 LKDLFSQIESLNKEN 97 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n 97 (241)
++||+.+|++|-.++
T Consensus 3 MnQLEdKvEeLl~~~ 17 (34)
T 2bni_A 3 MKQIEDKLEEILSKG 17 (34)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcc
Confidence 456666665554333
No 145
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=62.93 E-value=24 Score=24.94 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhhc-----cchhhhHHHH-------hhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENAS-----LLSESHYVTI-------EKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~-----L~ees~~L~~-------EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.|.++|.+-+.+-..|.. .+.++.+|.. +....+.|...|+..+..|+.+|..
T Consensus 10 il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 10 AMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666555544432 1223333333 3344566777777777777777765
No 146
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=62.62 E-value=7.8 Score=24.37 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=17.1
Q ss_pred hhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 103 ESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 103 es~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
|+..|++|...|+.|...||-||.-|.+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566666666666666666666554
No 147
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=62.60 E-value=4.8 Score=25.95 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhhccchh
Q 026212 83 LKDLFSQIESLNKENASLLSE 103 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ee 103 (241)
++||+.+|++|-.+|..|+.|
T Consensus 3 M~QLEdKVEeLl~~n~~Le~E 23 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENE 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHH
Confidence 466676666665544444433
No 148
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=62.38 E-value=28 Score=27.66 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=7.8
Q ss_pred hhhHHHHHHHHHHHHH
Q 026212 119 SSLESQIEVLQSELRA 134 (241)
Q Consensus 119 ~~Lk~e~e~Le~qlk~ 134 (241)
.++..+|+.|+.||..
T Consensus 86 Ekl~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHH
Confidence 3444555555555443
No 149
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=62.22 E-value=27 Score=26.47 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYV 107 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L 107 (241)
+|++-..+++.++..++..+..+.+++..|
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL 49 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQL 49 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444455555555544444444444444
No 150
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=62.17 E-value=15 Score=29.86 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=15.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 113 ELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 113 eLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
.++++...|-.+|.++..+++.++.
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk 102 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLK 102 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666654
No 151
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=61.86 E-value=17 Score=28.84 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=16.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~qlk 133 (241)
..+-.||..|+.++..|+.|+.
T Consensus 86 Ekl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 86 EKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3467788888888888887764
No 152
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=61.50 E-value=18 Score=26.58 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=22.7
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 88 SQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 88 ~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
..|+.|..+++.|...++....+...+++|-......+.+++.+|+
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~ 49 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLL 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444544544455554444444455555554
No 153
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=61.42 E-value=22 Score=27.03 Aligned_cols=7 Identities=0% Similarity=-0.012 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 026212 123 SQIEVLQ 129 (241)
Q Consensus 123 ~e~e~Le 129 (241)
.+.++++
T Consensus 58 ~eld~~e 64 (101)
T 3u1c_A 58 DSRDQVL 64 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 154
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=61.41 E-value=4.3 Score=25.99 Aligned_cols=24 Identities=13% Similarity=-0.105 Sum_probs=13.7
Q ss_pred ccchhhhHHHHhhhhhhhhhhhhH
Q 026212 99 SLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 99 ~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
+|+.++.+|..++.+|.+|..+|+
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345555666666666655555554
No 155
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=61.38 E-value=5.8 Score=29.20 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=14.0
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
|++|..+-.+|..|+..|+.+++.|.++|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555444
No 156
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=61.03 E-value=29 Score=26.16 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|+-=--+.+++.+.+..|-.++.+.++. ...|..|..|+++|+.+++.
T Consensus 23 IqAKQ~i~EELs~vr~~ni~~eskL~ea-------e~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 23 VLTRQSLSREMEAIRTDNQNFASQLREA-------EARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3333334555555555555555444433 33455555556666655555
No 157
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=60.47 E-value=9.4 Score=28.87 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhccchh----hhH-HHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSE----SHY-VTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ee----s~~-L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|+.|+.+-..|+.+...++.. +.. -..+.++||.....+..++.+|+.++..
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444443321 111 1456666777777777777777776665
No 158
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=60.40 E-value=8.5 Score=24.76 Aligned_cols=25 Identities=4% Similarity=0.097 Sum_probs=14.4
Q ss_pred ccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 99 SLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 99 ~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
.|+.+..+|-.++.+|.+|..+||.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4555556666666666666655553
No 159
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=60.32 E-value=15 Score=34.71 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 72 KACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 72 KasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+......++++.+.+.+++.+|+.....-.+.++.|....+. ++..|+.|++++..
T Consensus 75 ~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~-------~~~~i~~l~~~i~~ 130 (409)
T 1m1j_C 75 LPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIM-------NSNKITQLKQKIAQ 130 (409)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-------hHHHHHHHHHHHHH
Confidence 334455668999999999999987666555566666555444 44455555554443
No 160
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=59.98 E-value=26 Score=26.16 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 88 SQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 88 ~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
++++.|+.....|..-..-|..-.++|.+|...|...|+.|....+
T Consensus 25 aEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 25 AELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444455555555555555555555444
No 161
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=59.58 E-value=17 Score=38.00 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=8.0
Q ss_pred cchhhHHHhhHHHhhH
Q 026212 39 VHKAEREKLKREHLND 54 (241)
Q Consensus 39 ~~Ka~rER~RRdkLNe 54 (241)
..-+.-|.+|.++|++
T Consensus 778 g~l~~LE~~r~~~l~~ 793 (1184)
T 1i84_S 778 GVLAHLEEERDLKITD 793 (1184)
T ss_dssp THHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444455555555443
No 162
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.15 E-value=29 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=11.6
Q ss_pred hhhhhHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELR 133 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk 133 (241)
++..+..|+|.|-..|-
T Consensus 68 ~~~~ie~ElE~LTasLF 84 (135)
T 2e7s_A 68 EADKLNKEVEDLTASLF 84 (135)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777766654
No 163
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=59.14 E-value=6.5 Score=25.31 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 026212 83 LKDLFSQIESLNKENASLL 101 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ 101 (241)
++||..+|++|-.+|..|+
T Consensus 3 MnQLEdkVEeLl~~~~~Le 21 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLA 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4666666666654444333
No 164
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=58.55 E-value=6.2 Score=25.42 Aligned_cols=26 Identities=4% Similarity=0.070 Sum_probs=15.3
Q ss_pred hccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 98 ASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 98 ~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
..|+.+..+|-.++.+|.+|..+||.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34555566666666666666666553
No 165
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=58.54 E-value=16 Score=27.06 Aligned_cols=26 Identities=15% Similarity=-0.074 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhh
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEK 111 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EK 111 (241)
..+.|++|+.+.....+++++|..+.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 166
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=57.81 E-value=39 Score=25.11 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=13.4
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 106 YVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 106 ~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.+..+..+|+++...|+.++..|+.++.
T Consensus 75 ~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 75 NSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555544
No 167
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.49 E-value=7 Score=36.71 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=24.2
Q ss_pred chhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 101 LSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 101 ~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+.++..|..|...++++...|+.|+..++.+++.
T Consensus 55 e~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~ 88 (428)
T 4b4t_K 55 EKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKR 88 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666777777888888888888876
No 168
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=57.28 E-value=23 Score=25.67 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=9.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHH
Q 026212 111 KNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 111 KneLRdEk~~Lk~e~e~Le~qlk 133 (241)
...|...++.|..+.++.+.+|.
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443
No 169
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=57.19 E-value=12 Score=34.93 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCC
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPD 142 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~ 142 (241)
|.+|++++++|+.++..++++...++.+..+...+..+|..++..|...++..+ -.+|.
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~v-RvRP~ 70 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFC-RIRPP 70 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEE-EECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EcCCC
Confidence 566777777777777777777777777666666666778888877777766543 23554
No 170
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=56.80 E-value=11 Score=24.48 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=11.7
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHH
Q 026212 100 LLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
|+.++.+|-.++.+|.+|..+|+.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444444555555555555444443
No 171
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=56.73 E-value=5.3 Score=25.73 Aligned_cols=24 Identities=4% Similarity=0.120 Sum_probs=13.0
Q ss_pred ccchhhhHHHHhhhhhhhhhhhhH
Q 026212 99 SLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 99 ~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
.|+++..+|-.++.+|.+|..+||
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555555555555555554
No 172
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=56.65 E-value=49 Score=23.89 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..+-.++|+.++.+|+.++..+...=.+-+= -.|+.....|..|++++..+|..
T Consensus 4 ~~~~~~~l~~E~~~lk~E~~stSaQDeFAKW--aKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 4 LSKKYLAKVKERHELKEFNNSISAQDNYAKW--TKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566788999999999888776543222222 23677777888888888888775
No 173
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=56.28 E-value=16 Score=27.11 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
+.+++..+..|+.+...+..++.....|-.+|-+=|.+|..||..-.
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR 76 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455555555555555555555555666667777777777775443
No 174
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=56.19 E-value=14 Score=24.64 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 026212 83 LKDLFSQIESLNKENASLL 101 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ 101 (241)
||+|+.-+++|++.|..|.
T Consensus 5 vkelknyiqeleernaelk 23 (46)
T 3he4_B 5 VKELKNYIQELEERNAELK 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 5677777777776665443
No 175
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.82 E-value=17 Score=33.81 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCC
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKPDL 143 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p~~ 143 (241)
--.-|..|+++.++|+.++..++.+..++...-.+...+..+|.+++..|...++.++ -.+|.+
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~v-RvRP~~ 71 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYL-RIRPAL 71 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEE-EECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEE-EeCCCC
Confidence 3455677888889999999999888888887777777777788888888887777653 245654
No 176
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.35 E-value=17 Score=26.74 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
+++..+..|+.+...+..+......|-.+|-+=|.+|..||.
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444444444444444443334444455555555555553
No 177
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=54.86 E-value=18 Score=25.06 Aligned_cols=22 Identities=5% Similarity=0.163 Sum_probs=8.8
Q ss_pred hhHHHHhhhhhhhhhhhhHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~ 125 (241)
+..|....+.|..+...|+.++
T Consensus 13 V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 13 AQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 178
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=54.70 E-value=13 Score=34.51 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=38.2
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHH-hhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 64 EVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTI-EKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 64 ~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~-EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+|+. ..+++.-|..-..-|+.+-...++++ ..+ ++++|-. +.++ .+|...|+.+++.|+.+|+..+
T Consensus 14 ~p~~-d~~~~~~~~ke~~~l~~~v~~~~~~~-~~~----~~~~l~~e~~D~-~~e~~~l~~~l~~le~~l~~lL 80 (342)
T 1rq0_A 14 RPDL-TPEQMKNYGMEYAKIEEIENITNRIK-ETQ----EFIELLREEGEN-ELEIEKYEKELDQLYQELLFLL 80 (342)
T ss_dssp SSCC-CHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHHTTTTTTTTC-CSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH-hHH----HHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 4655 44455555544444444444444444 222 2222221 2233 7788999999999999999875
No 179
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=54.26 E-value=95 Score=27.38 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=50.2
Q ss_pred HhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhh------hhh
Q 026212 46 KLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKE------ENS 119 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRd------Ek~ 119 (241)
|.||++|-+++..|..- +|...| |..|+.++...+.++...+..+..++.++ +|+ .-.
T Consensus 110 R~~R~~l~~~I~kLk~k-~P~s~k-------------l~~LeqELvraEae~lvaEAqL~n~kR~~--lKEa~~~~f~Al 173 (234)
T 3plt_A 110 RDRKEKITDEIAHLKYK-DPQSTK-------------IPVLEQELVRAEAESLVAEAQLSNITREK--LKAAYSYMFDSL 173 (234)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCTH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CCCCch-------------HHHHHHHHHHHHHHhhHHHHHHHHhHHHH--HHHHHHHHHHHH
Confidence 77899999999998875 565432 55677777766666654444444444332 332 111
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 026212 120 SLESQIEVLQSELRARVVQSKPDLNIPPE 148 (241)
Q Consensus 120 ~Lk~e~e~Le~qlk~r~~~~~p~~~~~p~ 148 (241)
.-..||--|=.++-.++-...|+-.+.|+
T Consensus 174 ~E~aEK~~ila~~gk~Ll~lldd~pv~PG 202 (234)
T 3plt_A 174 RELSEKFALIAGYGKALLELLDDSPVTPG 202 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 22355555555555555544555555543
No 180
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=54.22 E-value=38 Score=26.23 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLN 94 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk 94 (241)
..|+-++.++|..++++++
T Consensus 24 ~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 24 QVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777755
No 181
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=54.22 E-value=16 Score=26.36 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=28.4
Q ss_pred HHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 94 NKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 94 k~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
|.-...-+.++..|+.-.|.|-||...+..++.+|+.+-
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 333344456778888888888888888888888887653
No 182
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.06 E-value=22 Score=41.56 Aligned_cols=77 Identities=23% Similarity=0.232 Sum_probs=41.6
Q ss_pred HHhhhccCCCCCCCchhhhH----HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhh-------------
Q 026212 57 LDLANAVEVNQPNNGKACVL----NEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENS------------- 119 (241)
Q Consensus 57 ~~L~slL~P~~~K~DKasIL----~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~------------- 119 (241)
.+|..+. |-.+|..+...+ ..|-.-|.++++++++|++..+.|+++-.....||.+|++|..
T Consensus 2001 ~dL~~A~-Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2001 ADLEKAE-PTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566654 666666555443 4555566666667777776666666666666666666665433
Q ss_pred -hhHHHHHHHHHHHHH
Q 026212 120 -SLESQIEVLQSELRA 134 (241)
Q Consensus 120 -~Lk~e~e~Le~qlk~ 134 (241)
.|..|+.+++++++.
T Consensus 2080 ~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHH
Confidence 345555555555444
No 183
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=53.10 E-value=8.2 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhccchh
Q 026212 81 RLLKDLFSQIESLNKENASLLSE 103 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ee 103 (241)
.||.+|+.+++.|+..+..|...
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888777666554
No 184
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=53.03 E-value=12 Score=32.85 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
||+-=|.|++==+++....+ .+.++...+..+...|.+|++.++++|++|+.++..
T Consensus 125 iLSalINF~~FRE~~~~~~~----e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 125 FLSGIINFIHFREACRETYM----EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555553333332222 223334444455555555555555555555555544
No 185
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=52.97 E-value=25 Score=30.30 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
++++.-+-..+.+|+.+|..|.++...|..+.++|..+...+-.+|+.+|.+|-..
T Consensus 124 ~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~K 179 (213)
T 1ik9_A 124 RELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKR 179 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777778888888888888888888888888888888877887777776554
No 186
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=52.83 E-value=46 Score=25.88 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
.+.+++.+.+..-.....++.++..|+....+.---+..|..+++.|..+|
T Consensus 49 ~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 49 DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 334444443332222233344444444444443334444555555554444
No 187
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.49 E-value=22 Score=26.92 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=9.8
Q ss_pred hhccchhhhHHHHhhhhhhhhhhhhH
Q 026212 97 NASLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 97 n~~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
|..|.+++..|..|.+.|+.++..|+
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334443333
No 188
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=52.46 E-value=23 Score=26.81 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=10.6
Q ss_pred hhccchhhhHHHHhhhhhhhhhhhhH
Q 026212 97 NASLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 97 n~~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
|..|..++..+..|.+.|+.||..|+
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444443
No 189
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.34 E-value=8.2 Score=24.86 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=12.3
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
+....++.++|+..|..|..+|-.
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555543
No 190
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=51.65 E-value=20 Score=23.34 Aligned_cols=23 Identities=17% Similarity=0.149 Sum_probs=10.7
Q ss_pred cchhhhHHHHhhhhhhhhhhhhH
Q 026212 100 LLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk 122 (241)
|+.++.+|..++.+|.+|..+|+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444444443
No 191
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=51.37 E-value=24 Score=32.77 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=48.0
Q ss_pred HHhhHhHHHhhhcc-CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 50 EHLNDLFLDLANAV-EVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 50 dkLNerF~~L~slL-~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
..||+-|..|..+- .|.. ..-+..+|..|-.+...+..--+.|......+..++.....+.|.|-++...|-.+|.
T Consensus 44 ~~l~~ff~alq~la~~P~~-~~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~ 120 (463)
T 2d4y_A 44 GSLQSFFTSLQTLVSNAED-PAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS 120 (463)
T ss_dssp HHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777776654 2332 4457778888887777777777777766666666666666666655555555554443
No 192
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.31 E-value=28 Score=40.87 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=13.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+.|-+|+.+=..+++.++.+++.
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHHHHHh
Confidence 34555666666666666666554
No 193
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=51.11 E-value=38 Score=28.34 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=6.8
Q ss_pred hhhHHHHhhhhhhh
Q 026212 103 ESHYVTIEKNELKE 116 (241)
Q Consensus 103 es~~L~~EKneLRd 116 (241)
.++.|..|..+||.
T Consensus 114 kI~aL~~Ei~~Lr~ 127 (175)
T 3lay_A 114 KINAVAKEMESLGQ 127 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555444444
No 194
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=50.14 E-value=35 Score=31.90 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=39.4
Q ss_pred HHHhhHHHhhHhHHHhhhcc-CCCC-CCCchhh-------hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhh
Q 026212 44 REKLKREHLNDLFLDLANAV-EVNQ-PNNGKAC-------VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNEL 114 (241)
Q Consensus 44 rER~RRdkLNerF~~L~slL-~P~~-~K~DKas-------IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneL 114 (241)
+.-..-+.+.++|.+|-..+ +|+. ...+|+. -|.+.+..+++|+..++.++.-.+-+.++... .-+.++
T Consensus 22 ~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D~--e~~~~a 99 (365)
T 1gqe_A 22 RGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDE--ETFNEA 99 (365)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH--HHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHH
Confidence 33455667778888887643 4543 2333443 33444444444444444443322222111000 012234
Q ss_pred hhhhhhhHHHHHHHHH
Q 026212 115 KEENSSLESQIEVLQS 130 (241)
Q Consensus 115 RdEk~~Lk~e~e~Le~ 130 (241)
.+|...|+.+++.|+.
T Consensus 100 ~~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 100 VAELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666666654
No 195
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.72 E-value=24 Score=33.46 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=17.1
Q ss_pred hhHhHHHhhhccCCCC-CCCchhhhHHHHHHHHHHHHHHHHHH
Q 026212 52 LNDLFLDLANAVEVNQ-PNNGKACVLNEAARLLKDLFSQIESL 93 (241)
Q Consensus 52 LNerF~~L~slL~P~~-~K~DKasIL~DAI~ylk~Lr~~v~~L 93 (241)
+..++.+|+.-|+-.. ...+=-+.....++++++-..+++..
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dn 107 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNN 107 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445555555442221 12222233344444444444444433
No 196
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=49.61 E-value=24 Score=25.79 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.+++..+..|+.+...+..++.....|-.+|-+=|.+|..||..-..
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555556777778888888888865443
No 197
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=49.42 E-value=19 Score=34.91 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
+|..+|+.++.-|+.....--+.++.|+.-..+++.+.++|+.+|.
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677777777765443336788888888888888888888873
No 198
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=49.11 E-value=33 Score=27.51 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhhh
Q 026212 86 LFSQIESLNKENA 98 (241)
Q Consensus 86 Lr~~v~~Lk~~n~ 98 (241)
|+.+.+.|+.++.
T Consensus 27 l~~eN~~Lk~e~e 39 (155)
T 2oto_A 27 LRHENKDLKARLE 39 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 199
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.87 E-value=12 Score=35.04 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
.|....+++|+.+++-|+.+++.+. .+.+.++.|...++.|+..|+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~-------~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIK-------DEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555555555554444333 344444444444444444443
No 200
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=48.77 E-value=21 Score=32.15 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=14.7
Q ss_pred HHHHHHHhhhccchhhhHHHHhhhhhhh
Q 026212 89 QIESLNKENASLLSESHYVTIEKNELKE 116 (241)
Q Consensus 89 ~v~~Lk~~n~~L~ees~~L~~EKneLRd 116 (241)
+++.|+.+++.|++++..|..++..++.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555555555555555555444444
No 201
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=48.71 E-value=56 Score=26.86 Aligned_cols=60 Identities=7% Similarity=0.067 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCC
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVVQSKP 141 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~~~~p 141 (241)
+..|++-|.+|+.++.+++..... ++..++. ....+...|+++++.|+..|+.....++.
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~~n~---eI~~ik~---~~~~~~~~l~~~i~~l~~~l~~y~e~~r~ 77 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQMNE---AIDAAKA---RASQKSAPLLARRKELEDGVATFATLNKT 77 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 788999999999999999865532 3333332 25667889999999999999998765533
No 202
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=48.65 E-value=35 Score=25.10 Aligned_cols=31 Identities=29% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhh
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELK 115 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLR 115 (241)
+|...|+.|..+++.|...++....+...++
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444444444
No 203
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=48.61 E-value=30 Score=26.83 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=31.4
Q ss_pred chhhHHHhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhh
Q 026212 40 HKAEREKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENS 119 (241)
Q Consensus 40 ~Ka~rER~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~ 119 (241)
+....++.|-.-+|+.-..|...-+--..|.+...=|...|.-++...++|.-|+.++.--.+.-..-..-+..+-.||.
T Consensus 7 ~~~~~~~~~~~ei~~L~~~L~~AEeaL~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe 86 (96)
T 3fx0_A 7 SVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKE 86 (96)
T ss_dssp -------------------CCSSTTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTS
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444444444444444443222235666666666666666666666666666554333222222223333555555
Q ss_pred hhHHHHHHH
Q 026212 120 SLESQIEVL 128 (241)
Q Consensus 120 ~Lk~e~e~L 128 (241)
.|..+++.|
T Consensus 87 ~L~~ql~~l 95 (96)
T 3fx0_A 87 LLQEQLEQL 95 (96)
T ss_dssp CC-------
T ss_pred HHHHHHHhh
Confidence 555555443
No 204
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.41 E-value=16 Score=28.64 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhh----hhhhhHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKE----ENSSLESQIEVLQSELRA 134 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRd----Ek~~Lk~e~e~Le~qlk~ 134 (241)
|..+-.-|.+|+..|+.|+.+...+......|.....++.. +...+...|..|+.+|..
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~ 93 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQK 93 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55566778888888888888888877776666665555443 233444555555555543
No 205
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=47.89 E-value=30 Score=25.91 Aligned_cols=28 Identities=32% Similarity=0.340 Sum_probs=12.8
Q ss_pred hhhccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 96 ENASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 96 ~n~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
+|..|..++..+..|.+.|++||..|+.
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555554443
No 206
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=47.75 E-value=61 Score=24.92 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
...+-.++|+.++.+|+.++..+...=.+-+= -.|+.....|..|++++..+|.+
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKW--aKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSISAQDNYAKW--TKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999888776443222211 22555566666666666666655
No 207
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=47.35 E-value=74 Score=24.78 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhh---hhhhhhhHHHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNEL---KEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneL---RdEk~~Lk~e~e~Le~qlk~r 135 (241)
|+.|-+.+.+-+.++.--..-...|.+ .|+.||..- ......|+.||..|.++|+.-
T Consensus 27 LT~Aq~~l~~~eaQAaTCNqTV~tL~~---SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 27 LTRTQDSLLQAETQANSCNLTVVTLQE---SLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555443333333333 344444332 234556777778887777753
No 208
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=47.31 E-value=13 Score=26.47 Aligned_cols=43 Identities=26% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+-..++.+|+..|..|-.++..|+ .....-+.||++|..-|+.
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le-------~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLE-------FSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 345678888888888877666654 4445556778888877776
No 209
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.18 E-value=74 Score=23.53 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=24.3
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+.....+..+++.+...|+.++..|+.+++..
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888888888888777653
No 210
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=46.85 E-value=77 Score=23.06 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=10.8
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 107 VTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 107 L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
|...+..+..+...|..+++.++.++
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l 95 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443
No 211
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.43 E-value=24 Score=26.27 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=26.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhh
Q 026212 69 NNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKE 116 (241)
Q Consensus 69 K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRd 116 (241)
..+.+-|..+--+++..|..+++.++.....|...+.++..+.++++.
T Consensus 58 ~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 58 TVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp EETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666666555555555555555444443
No 212
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.80 E-value=45 Score=31.45 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhh----------hhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKN----------ELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKn----------eLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
+.-|.+|-++-.+|..+.+.|+.+.+.+..+.. +|..+...|+.++..|+.++...-.
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777766655433 4556666777777777777776543
No 213
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=45.46 E-value=32 Score=26.99 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
|.=+|+-|+...+.+++..-.+..|-.+...+..++|..+..|+.++..
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777777777777777777777888888888877765
No 214
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=45.43 E-value=42 Score=24.58 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhhccc
Q 026212 85 DLFSQIESLNKENASLL 101 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ 101 (241)
.|..+|+.|+.+...|+
T Consensus 26 ~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 215
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.31 E-value=23 Score=30.17 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 026212 82 LLKDLFSQIESLNKENA 98 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~ 98 (241)
||--|...+..|+.+|.
T Consensus 146 lid~~ld~~~~L~~~n~ 162 (184)
T 3w03_C 146 LICYCLDTIAENQAKNE 162 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445544444443
No 216
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=45.13 E-value=78 Score=23.47 Aligned_cols=52 Identities=23% Similarity=0.144 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.++-|++++..=+.++..|++.++.-...-..|-||.-.|--|---|++.|.
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 5566777777666677777766655544444577777776666655555554
No 217
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=45.09 E-value=28 Score=30.01 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYV 107 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L 107 (241)
.|..|..++..|..+++....|+..|
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L 46 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQL 46 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 218
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.90 E-value=67 Score=23.42 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=18.3
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
...+......|..+...++.++.+.-.+++.
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~ 58 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQD 58 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666655554
No 219
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=44.82 E-value=33 Score=25.71 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYV 107 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L 107 (241)
|.+|..==++|..+|+.++.++..|.++.+.|
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666666655555555554444
No 220
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.34 E-value=34 Score=28.63 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=19.4
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 109 IEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 109 ~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
...++|-+|...|+.++.....+++..++
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVKRDVAMA 141 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777766666665553
No 221
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=44.12 E-value=28 Score=31.23 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=16.8
Q ss_pred hccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 98 ASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 98 ~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
....+++..|..+..+|++|...|+.+++.+..
T Consensus 181 n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 181 NVDAFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333445555555555555555555555444444
No 222
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=43.94 E-value=44 Score=32.09 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=22.1
Q ss_pred HHh-hhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 108 TIE-KNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 108 ~~E-KneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
..+ ..+|+++...|+.+...++.++...+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 67777888888888888888888754
No 223
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=43.92 E-value=23 Score=32.46 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 88 SQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 88 ~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
..+.+|.++...|+..+.....+...|+.....++..|.+|+++|..-
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666667777667777777776655443
No 224
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=43.32 E-value=70 Score=30.73 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHH---------------------------hhhhh----hhh-hhhhHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTI---------------------------EKNEL----KEE-NSSLESQIEVLQS 130 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~---------------------------EKneL----RdE-k~~Lk~e~e~Le~ 130 (241)
-++|+.+++.|+.+...+..+|..++. +..+| ..+ ...|+.++..|+.
T Consensus 46 ~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~ 125 (484)
T 3lss_A 46 WRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAK 125 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777776667666666554 23356 677 7888899999998
Q ss_pred HHHHHHhh
Q 026212 131 ELRARVVQ 138 (241)
Q Consensus 131 qlk~r~~~ 138 (241)
++......
T Consensus 126 ~~~~~~~~ 133 (484)
T 3lss_A 126 EAQQLEEE 133 (484)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88875443
No 225
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.30 E-value=60 Score=29.49 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=14.0
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 109 IEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 109 ~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.++..-......|+.||.+|+++|+.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333445566666666666664
No 226
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=43.28 E-value=46 Score=31.99 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhh---hhhhhhhhhhHHHHHHHHHHHHHHHhhc
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEK---NELKEENSSLESQIEVLQSELRARVVQS 139 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK---neLRdEk~~Lk~e~e~Le~qlk~r~~~~ 139 (241)
--++|+.++++|+.+...+..+|..++..+ .+|..|...|+.++..|+.++...-...
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888876643 4688899999999999999988764433
No 227
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.14 E-value=17 Score=31.27 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhh
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENS 119 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~ 119 (241)
+..|..+++....+++.|++++..++.......+..+
T Consensus 29 n~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 29 NFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 4445555555555555555555555544444444333
No 228
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=43.07 E-value=23 Score=22.80 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 026212 83 LKDLFSQIESLNKENA 98 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~ 98 (241)
++||..+|++|-.++.
T Consensus 3 MnQledKvEel~~~~~ 18 (34)
T 2r2v_A 3 LKQVADKLEEVASKLY 18 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhH
Confidence 4566666665544333
No 229
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=42.90 E-value=16 Score=28.14 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=13.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH
Q 026212 113 ELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 113 eLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.|+++...|+.++.+++.+++.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~ 32 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVAR 32 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666666666
No 230
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=42.01 E-value=45 Score=29.09 Aligned_cols=36 Identities=36% Similarity=0.304 Sum_probs=27.8
Q ss_pred HhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 95 KENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 95 ~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.+|..|..++..|..|.+.|+.||..|+.=.+.++.
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~ 150 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 150 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778888888888888888888888876666554
No 231
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=41.99 E-value=56 Score=25.49 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHH
Q 026212 87 FSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQ 124 (241)
Q Consensus 87 r~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e 124 (241)
+.+++.|+.++..|+....+...-..++.++++.|..+
T Consensus 17 e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~ 54 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIK 54 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 44455555555555555544444444565666666543
No 232
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=41.79 E-value=46 Score=25.70 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHHH
Q 026212 120 SLESQIEVLQSELRA 134 (241)
Q Consensus 120 ~Lk~e~e~Le~qlk~ 134 (241)
++..+|+.|+.++..
T Consensus 65 kl~~eKe~L~~ql~~ 79 (94)
T 3jsv_C 65 KLVEKKEYLQEQLEQ 79 (94)
T ss_dssp HHHHTTSHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 344444444444433
No 233
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=41.49 E-value=20 Score=26.39 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=32.6
Q ss_pred HHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 90 IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 90 v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
...|+.....|+.++-....-..+|-+...+...+|++|+.+++...
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777777777777777777777777777777776654
No 234
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=41.41 E-value=33 Score=22.89 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHH
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTI 109 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~ 109 (241)
-.++++.+|.++-+.|++....|+.++..|..
T Consensus 6 ~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 6 IMYDMISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888777777766655544
No 235
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=41.33 E-value=40 Score=25.54 Aligned_cols=57 Identities=9% Similarity=0.097 Sum_probs=29.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
..|-..+.++=+.|.+..+=+++++-+...+.. ..|..+......-|.++.+|+.+|
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~------s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPL------TFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445555555555555555555555444432 234444444455555666666555
No 236
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=41.21 E-value=1e+02 Score=25.34 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=39.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhH-------------HHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQIESLNKENASLLSESHY-------------VTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~-------------L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.-|.-++.+--.-+.+|..+++.|+-+...+..+.+. +..-+.....|++.+...+..|..|++..
T Consensus 25 ~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 25 TWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666555444333332 11223445667788888888888888775
No 237
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=41.07 E-value=77 Score=24.90 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=20.4
Q ss_pred HHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 92 SLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 92 ~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
-|+.....|++++..|..-+..|.......+..+.+.+.++..
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~ 127 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKD 127 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444444444444444444554444444444455555444
No 238
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=41.03 E-value=32 Score=23.65 Aligned_cols=23 Identities=4% Similarity=0.053 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 026212 77 NEAARLLKDLFSQIESLNKENAS 99 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~ 99 (241)
..-+.-+..|..++.+|+.++..
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~ 52 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNE 52 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433333
No 239
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=40.86 E-value=39 Score=25.60 Aligned_cols=28 Identities=36% Similarity=0.347 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSE 103 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ee 103 (241)
|.+|+.=-++|..+|+.|++++..|.++
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~e 68 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKE 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 240
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.65 E-value=35 Score=26.76 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIE 126 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e 126 (241)
.+++..+..|+.+...+..+......|-.+|-+=|..|..||.
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIa 122 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIA 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444555555555555553
No 241
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=40.37 E-value=86 Score=25.27 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
|-+++..++++...|..+.+.+..|..|+.|....--...-.+-|+|+...
T Consensus 48 Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~t 98 (123)
T 4aj5_K 48 LLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQT 98 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666677777777778888888988888888877777778888888754
No 242
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.26 E-value=51 Score=32.57 Aligned_cols=38 Identities=8% Similarity=0.055 Sum_probs=22.3
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
|++++....+.+.-||.-...+..+|.+||.-+...++
T Consensus 122 LKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333344455666666667777778776665554
No 243
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.19 E-value=41 Score=25.34 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhh
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEE 117 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdE 117 (241)
..+..++++-+..|..|..++..|+.+..+|+.+
T Consensus 41 i~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 41 QNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555666667777776666666666555544
No 244
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=40.16 E-value=34 Score=29.86 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLL 101 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ 101 (241)
|.+|+.=-++|..+|+.|++++..|.
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~Lk 135 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLK 135 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333
No 245
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=40.10 E-value=40 Score=25.53 Aligned_cols=29 Identities=34% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSES 104 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees 104 (241)
|.+|+.=-++|..+|+.+++++..|.++.
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en 61 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKEN 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444555555555555444444443
No 246
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=39.68 E-value=38 Score=28.54 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=10.2
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 107 VTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 107 L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
|..++..|..+...|..+++.|+.
T Consensus 61 L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 61 LRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444
No 247
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=39.58 E-value=72 Score=24.13 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhh------hhhhhhhH--HHHHHHHHHHHHHHh
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNEL------KEENSSLE--SQIEVLQSELRARVV 137 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneL------RdEk~~Lk--~e~e~Le~qlk~r~~ 137 (241)
.+|+++++.|+.+...|..++..+..+.++. ..-...|+ +||-.+-+.|-.+++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4577777777777777777777766554322 22222232 355556666666655
No 248
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=39.57 E-value=56 Score=30.36 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHhhh----------hhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIEKN----------ELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKn----------eLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
+.-|.+|-++-.++..+.+.|+.+.+.+..+.. +|..+...|+.++..|+.++...-.
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEE 96 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777777777765543 4556666777777778777776543
No 249
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=39.57 E-value=35 Score=24.97 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=31.7
Q ss_pred HhHHHhhhccCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhh
Q 026212 54 DLFLDLANAVEVNQ---PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNE 113 (241)
Q Consensus 54 erF~~L~slL~P~~---~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKne 113 (241)
.-..+|.. |+++. -..+.+-|..+--+++..|..+.+.++.....|.....++..+..+
T Consensus 36 ~~~~EL~~-l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~ 97 (107)
T 1fxk_A 36 KALEELSR-AADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQE 97 (107)
T ss_dssp HHHHHHHH-SCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555 34443 2455666666666666667777776665555554444444444333
No 250
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=39.31 E-value=95 Score=25.32 Aligned_cols=46 Identities=24% Similarity=0.051 Sum_probs=25.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhh
Q 026212 71 GKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKE 116 (241)
Q Consensus 71 DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRd 116 (241)
+|..==..+.++.+++...+..|.+.|..|..|+++-++-..-|++
T Consensus 62 ~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~ 107 (152)
T 4fla_A 62 EKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVE 107 (152)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344566666666666777777666666665544443333333
No 251
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=39.31 E-value=41 Score=29.27 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=29.0
Q ss_pred hhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhh
Q 026212 59 LANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSL 121 (241)
Q Consensus 59 L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~L 121 (241)
|-.+++|... .++-++.+.|||++.-..-.+...|+....+|..|.++||.....|
T Consensus 15 ~~~~~~~~~~-------~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kL 70 (206)
T 3oa7_A 15 LNKLLDPELA-------QSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNL 70 (206)
T ss_dssp HHHHHCTTCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3345556542 4566677777777665555544445444444444444444433333
No 252
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=38.65 E-value=84 Score=23.43 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=13.9
Q ss_pred hhhhhhhhhhhhHHHHHH-HHHHHHH
Q 026212 110 EKNELKEENSSLESQIEV-LQSELRA 134 (241)
Q Consensus 110 EKneLRdEk~~Lk~e~e~-Le~qlk~ 134 (241)
.++.+......-|.++.+ |..+|+.
T Consensus 66 ~R~~~~~klr~Yk~dl~~~lk~~lk~ 91 (97)
T 3onj_A 66 ERATYKAKLREWKKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555566666 6666665
No 253
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=38.44 E-value=71 Score=23.38 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhh
Q 026212 78 EAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSL 121 (241)
Q Consensus 78 DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~L 121 (241)
.+..-|++++.+-..|+.....|+..+..-+.+.+.++.|...+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888777777776666666655443
No 254
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=38.42 E-value=1e+02 Score=24.06 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhh----hhhhHHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEE----NSSLESQIEVLQSELR 133 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdE----k~~Lk~e~e~Le~qlk 133 (241)
=+-+.+.+++|..+|..||.....+..+.+.-.+|.+.--.. ..+...+|.+|..-++
T Consensus 37 E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire~fq 98 (101)
T 4aj5_1 37 EDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQ 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 467889999999999999987766555444433443332211 2244567777766554
No 255
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=38.33 E-value=14 Score=28.41 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=18.6
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.+.|..+.++|+++...|+.|++.|++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666677777777777777777665
No 256
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=37.93 E-value=11 Score=28.35 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=4.4
Q ss_pred hhhhhhhhhhH
Q 026212 112 NELKEENSSLE 122 (241)
Q Consensus 112 neLRdEk~~Lk 122 (241)
++|..||..||
T Consensus 32 ~qLE~EN~~Lk 42 (78)
T 1dip_A 32 SQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 257
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.39 E-value=47 Score=24.31 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhh
Q 026212 83 LKDLFSQIESLNKEN 97 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n 97 (241)
|-.|..++..|+...
T Consensus 31 Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 31 LEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
No 258
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=37.37 E-value=59 Score=21.90 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=21.8
Q ss_pred HHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 90 IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 90 v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
|.+|+.+..+|+.+-..|+..----+|=..-|+.||.+|...
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555433222334445555666655544
No 259
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.29 E-value=24 Score=33.12 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=20.9
Q ss_pred HHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 92 SLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 92 ~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
+|......|+.+++.++.|...+..|+..|+.++..++.+++.
T Consensus 29 ~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~ 71 (434)
T 4b4t_M 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKN 71 (434)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455566666666666666777777777766666664
No 260
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=37.20 E-value=3.8 Score=34.44 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=13.9
Q ss_pred HHhhhccchhhhHHHHhhhhhhhhhhhhHHH
Q 026212 94 NKENASLLSESHYVTIEKNELKEENSSLESQ 124 (241)
Q Consensus 94 k~~n~~L~ees~~L~~EKneLRdEk~~Lk~e 124 (241)
+.+...|.+++..|..+..+++|...++.+|
T Consensus 18 ~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae 48 (177)
T 3a6m_A 18 GQEAQALEERLKAAEEELKGLKDKYLRLLAD 48 (177)
T ss_dssp HHHHSSTTTSTTGGGGTSSSHHHHHHTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444455544444443
No 261
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=37.13 E-value=54 Score=30.48 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHHHHh--------hhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYVTIE--------KNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~E--------KneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
+.-|.+|-.+-.++..+.+.|+.+.+.+..+ ..+|+.+...|+.++..|+.++...-.
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777787777766644 235677777888888888888777544
No 262
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=36.90 E-value=15 Score=33.67 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=18.6
Q ss_pred HHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 89 QIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 89 ~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
+|.+|+.....++++++.|.....+++.+.+.|+..+..|+.
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555444454444455555444443
No 263
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=36.89 E-value=19 Score=21.86 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=10.8
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le~qlk 133 (241)
|+..|.+||.||.-|+-++-
T Consensus 5 lkqknarlkqeiaaleyeia 24 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 44455556666655555543
No 264
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=36.85 E-value=32 Score=26.03 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=10.5
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELRA 134 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk~ 134 (241)
-...|+.+++.|+.++..
T Consensus 76 ~v~~l~~~i~~lk~~~~~ 93 (95)
T 2c5k_T 76 QVKNIKQQLDALKLRFDR 93 (95)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344566666666666654
No 265
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=36.59 E-value=25 Score=23.96 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 026212 80 ARLLKDLFSQIESLNKENASLL 101 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ 101 (241)
-.||.+|+.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3788899999999988777664
No 266
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.23 E-value=35 Score=29.05 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhh
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESH 105 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~ 105 (241)
|++-+++-+.+|+++++.|..+|+.|+.+-.
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888887776543
No 267
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=35.95 E-value=74 Score=27.95 Aligned_cols=53 Identities=8% Similarity=0.026 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHh-hhhhhhhhhhhHHHHHHHHHH
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIE-KNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~E-KneLRdEk~~Lk~e~e~Le~q 131 (241)
--+.+.+|+.++++|+.....+..++..+..+ ...|..=...|..++...+..
T Consensus 224 p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 277 (357)
T 3rrk_A 224 LGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAV 277 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888888777777777666 555665555666666555544
No 268
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=35.92 E-value=65 Score=26.74 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhh----------hhHHHHHHHHHHHHH
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENS----------SLESQIEVLQSELRA 134 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~----------~Lk~e~e~Le~qlk~ 134 (241)
.|+-|.+|.+-+.+-....+.|.+.|+-|..| |.||+. +|+.|-+.+.+.|..
T Consensus 96 DiRKLrELEADLKEKDsMVe~LT~TiG~LrKE---LEdEklK~~E~MdSFE~LkvENE~vkerl~m 158 (167)
T 4gkw_A 96 DMRKLGELEADLKEKDSMVESLTETIGILRKE---LENEKLKAAENMDSFEKLSMENENLKEKIAH 158 (167)
T ss_dssp HHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
No 269
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=35.85 E-value=32 Score=32.14 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=45.8
Q ss_pred hhHHHhhHhHHHhhhcc-CCCC-CCC-------chhhhHHHHHHHHHHHHHHHHHHHHhhh-ccchhhhHHHHhhhhhhh
Q 026212 47 LKREHLNDLFLDLANAV-EVNQ-PNN-------GKACVLNEAARLLKDLFSQIESLNKENA-SLLSESHYVTIEKNELKE 116 (241)
Q Consensus 47 ~RRdkLNerF~~L~slL-~P~~-~K~-------DKasIL~DAI~ylk~Lr~~v~~Lk~~n~-~L~ees~~L~~EKneLRd 116 (241)
.+=+.+.++|.+|-..+ +|+. ... ..-+-|.+.+..+++|+..++.++.-.+ -+.++ . .++.+
T Consensus 17 ~~l~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~ee-d------~~a~~ 89 (365)
T 2ihr_1 17 FDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEE-R------EALKP 89 (365)
T ss_dssp SSHHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCTT-G------GGTGG
T ss_pred cCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-H------HHHHH
Confidence 34456677777777643 3432 122 3345566666666666666666655444 22221 1 56788
Q ss_pred hhhhhHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQS 130 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~ 130 (241)
|...|+.+++.|+.
T Consensus 90 e~~~l~~~~~~le~ 103 (365)
T 2ihr_1 90 ELEEAAKKLDELYH 103 (365)
T ss_dssp GTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888883
No 270
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.46 E-value=50 Score=24.98 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=8.4
Q ss_pred HhhhhhhhhhhhhHHHHH
Q 026212 109 IEKNELKEENSSLESQIE 126 (241)
Q Consensus 109 ~EKneLRdEk~~Lk~e~e 126 (241)
.|-.+|-+=|..|..||.
T Consensus 65 ~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 65 NDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444555555543
No 271
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=35.18 E-value=78 Score=26.60 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHH
Q 026212 86 LFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQ 129 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le 129 (241)
|+++++.|......|.+.++.....-.+|..+.++||-++-.|.
T Consensus 101 LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~ 144 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLR 144 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44445555555555554444444444444444444444444443
No 272
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=35.12 E-value=98 Score=23.85 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=14.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..+-.||..|..++..|+.|+..
T Consensus 64 Ekl~~eKe~L~~ql~~lq~q~~~ 86 (94)
T 3jsv_C 64 EKLVEKKEYLQEQLEQLQREFNK 86 (94)
T ss_dssp HHHHHTTSHHHHHHHHHHHTTC-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 33566777777777777666543
No 273
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=34.86 E-value=21 Score=22.99 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=11.6
Q ss_pred cchhhhHHHHhhhhhhhhhhhhH
Q 026212 100 LLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk 122 (241)
|..+..+|-.++.+|.+|..+|+
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 44445555555555555555444
No 274
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.63 E-value=98 Score=23.28 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=18.7
Q ss_pred hhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 102 SESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 102 ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
-++.++..|+..-.-...+-|.|+..|++||...
T Consensus 33 ~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~k 66 (81)
T 3qh9_A 33 IKVEELENERNQYEWKLKATKAEVAQLQEQVALK 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3344444444444444445557777777777654
No 275
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=34.54 E-value=24 Score=22.59 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhh
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEK 111 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK 111 (241)
..|.-|+.+++.|+.+++.+++++..+..+.
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777777777777766666555443
No 276
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.52 E-value=41 Score=27.95 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchh
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSE 103 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ee 103 (241)
...|=.||.+=+.+-..++..|..|...
T Consensus 96 FeEAN~MVa~ar~~~~~~e~r~~~L~~q 123 (154)
T 2ocy_A 96 FDEANNMVADARKEKYAIEILNKRLTEQ 123 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 277
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=34.50 E-value=1.1e+02 Score=22.63 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=22.0
Q ss_pred HHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHH
Q 026212 49 REHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLF 87 (241)
Q Consensus 49 RdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr 87 (241)
-..+|+++.+++.-- |.. ..+|..||. |+.+-.+|.
T Consensus 32 A~~vd~~~~~i~~~~-~~~-~~~r~~vma-ALnladel~ 67 (104)
T 1t3u_A 32 ARYLDGKMREIRSSG-KVI-GADRVAVMA-ALNITHDLL 67 (104)
T ss_dssp HHHHHHHHHHHHTTT-CSC-SHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCC-CHHHHHHHH-HHHHHHHHH
Confidence 467899999999864 443 445655543 444444443
No 278
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.09 E-value=84 Score=24.22 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
..++|..++.+|+.+...|+.-.... .-||.+-.-|..|.++-..+
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~iqs~a----K~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKMQNNS----KLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665544322222 22344444455555444443
No 279
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=34.09 E-value=20 Score=27.70 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 77 NEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
+..++-.++|+.++.+|+.++..+...=.+-+= -.|+.....|..|++.+..+|.
T Consensus 26 s~~~~~~~~lk~E~~~lk~E~~stSaQDEFAKW--AKL~Rk~DKl~~ele~l~~~L~ 80 (94)
T 3vlc_E 26 NELSKKYLAKVKERHELKEFNNSISAQDNYAKW--TKNNRKLDSLDKEINNLKDEIQ 80 (94)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTTSCTTTCHHHH--HHHHHHHHHHHHHTTTHHHHTT
T ss_pred cHhHHHHHHHHHHHHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888888877765432211111 1244444555555555555544
No 280
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=34.07 E-value=1e+02 Score=25.52 Aligned_cols=18 Identities=33% Similarity=0.226 Sum_probs=7.5
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 026212 117 ENSSLESQIEVLQSELRA 134 (241)
Q Consensus 117 Ek~~Lk~e~e~Le~qlk~ 134 (241)
+...|++++..|+.+++.
T Consensus 88 ~la~l~~~~~~LeAE~aK 105 (146)
T 2xnx_M 88 ELDQLSSEKEQLTIEKAK 105 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 333433344445544443
No 281
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.84 E-value=80 Score=28.64 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=17.2
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 110 EKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 110 EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
...||..|...|..+++.++.|++.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777764
No 282
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=33.59 E-value=59 Score=27.59 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026212 76 LNEAARLLKDLFSQIESLNKEN 97 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n 97 (241)
++.|-+-++.|+.+++.|++++
T Consensus 130 i~~AertV~kLqkeiD~LEDeL 151 (175)
T 3mud_A 130 ICYCLDTTAKNEKSIDDLEEKV 151 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554443
No 283
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.41 E-value=71 Score=24.45 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026212 76 LNEAARLLKDLFSQIESLNKEN 97 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n 97 (241)
+.+|++++ ..+++.|+...
T Consensus 86 ~~eA~~~l---~~r~~~l~~~~ 104 (133)
T 1fxk_C 86 FEDAMESI---KSQKNELESTL 104 (133)
T ss_dssp HHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHH
Confidence 56777763 34444444433
No 284
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.38 E-value=90 Score=24.35 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhh-----hhhhhhhHHHHHHHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNEL-----KEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneL-----RdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
+||+++..+......|-.++...-.+.+++ .++....|...++|-.+|+..+
T Consensus 48 ~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~~dF~~~L 104 (130)
T 2dnx_A 48 KLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAAL 104 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333333333333333 2233345556666766666543
No 285
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=32.73 E-value=36 Score=26.78 Aligned_cols=26 Identities=27% Similarity=0.205 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHh
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIE 110 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~E 110 (241)
+.+.++++|..++..|...+..|..|
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 286
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=32.65 E-value=50 Score=28.75 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 87 FSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 87 r~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.+.+++|+.+..+.-.+..+|+.--++|+.|+..|+..+.+|+.
T Consensus 29 ~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 29 TEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 34566667666666667777777777777777777777777764
No 287
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=32.55 E-value=53 Score=28.64 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=29.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
-++..+..+.+.-..++.++++.|..+|..++.++..|+.++.+...+-.-.+.....|
T Consensus 137 E~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~ql 195 (250)
T 2ve7_C 137 EACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQL 195 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 46677777777777777777777777777766666666666554444433333333333
No 288
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=32.46 E-value=80 Score=24.15 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 81 RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+|=.++..+++++..-..++-+--..=..-|..-.+|..+||.|++....|+
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~q~ 91 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDHQI 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4555566677666643333222111112234445667777777777655543
No 289
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.46 E-value=25 Score=32.99 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=18.3
Q ss_pred HHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 89 QIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 89 ~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++++++.......+.++.|..++++|. .++..++.+++.
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~-------~~~~~~~~e~~~ 64 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALN-------DKVRFIKDELRL 64 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 444444444444444445555555444 444444555544
No 290
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=32.28 E-value=40 Score=21.64 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=11.3
Q ss_pred cchhhhHHHHhhhhhhhhhhhhH
Q 026212 100 LLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk 122 (241)
|..+..+|-.++.+|.+|..+|+
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444555555555555544444
No 291
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=31.90 E-value=48 Score=20.75 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVT 108 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~ 108 (241)
.+|..+|..-+.+|-.|+++...|.
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4555555555555555554444443
No 292
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=31.84 E-value=38 Score=29.13 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 026212 81 RLLKDLFSQIESLNKENASL 100 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L 100 (241)
.-+.+|+++...|.++|+.|
T Consensus 161 ~~i~~L~a~N~hLqkENeRL 180 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERL 180 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 293
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=31.76 E-value=35 Score=26.55 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=17.4
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 106 YVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 106 ~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
++..+..+..+++..|+..+..||.|+..
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556666677777777777654
No 294
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=31.66 E-value=28 Score=25.66 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=3.7
Q ss_pred hhhHHHHHHH
Q 026212 119 SSLESQIEVL 128 (241)
Q Consensus 119 ~~Lk~e~e~L 128 (241)
.-||.||-+|
T Consensus 53 ~lLK~EIRRl 62 (71)
T 3bbp_D 53 KLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 295
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=31.49 E-value=1.4e+02 Score=26.15 Aligned_cols=10 Identities=10% Similarity=-0.150 Sum_probs=4.1
Q ss_pred HhHHHhhhcc
Q 026212 54 DLFLDLANAV 63 (241)
Q Consensus 54 erF~~L~slL 63 (241)
.++..+...|
T Consensus 70 ~k~~~~~~~L 79 (357)
T 3rrk_A 70 SQAEQSLTVV 79 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3344444444
No 296
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=31.28 E-value=93 Score=26.17 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=18.3
Q ss_pred HHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 90 IESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 90 v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
-+.|..+...|+.....|..++..|..+...|+..+.++
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555555555555555544443
No 297
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=31.16 E-value=12 Score=27.99 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=15.4
Q ss_pred chhhhHHHHhhhhhhhhhhhhHHHH
Q 026212 101 LSESHYVTIEKNELKEENSSLESQI 125 (241)
Q Consensus 101 ~ees~~L~~EKneLRdEk~~Lk~e~ 125 (241)
.+|...|+....||.+.+..|+.|-
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN 38 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLEREN 38 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666677776665553
No 298
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=31.14 E-value=73 Score=24.40 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 026212 124 QIEVLQSELR 133 (241)
Q Consensus 124 e~e~Le~qlk 133 (241)
.+++|-.+|.
T Consensus 65 qkeRL~~dF~ 74 (97)
T 1hs7_A 65 QNGKLSADFK 74 (97)
T ss_dssp HCHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 3444443333
No 299
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=30.93 E-value=26 Score=22.83 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=16.7
Q ss_pred HHHhhHhHHHhhhccCCCCCC
Q 026212 49 REHLNDLFLDLANAVEVNQPN 69 (241)
Q Consensus 49 RdkLNerF~~L~slL~P~~~K 69 (241)
-+|+-+++--|+++|+|+.+|
T Consensus 16 tekmeeqldllsaildpsksk 36 (40)
T 4h62_K 16 TEKMEEQLDLLSAILDPSKSK 36 (40)
T ss_pred HHHHHHHHHHHHHHcCccccc
Confidence 355678889999999998755
No 300
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=30.82 E-value=27 Score=28.93 Aligned_cols=53 Identities=26% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
-+.-.++....++.....+..++..|+.|...|.++++.+.+-...|...|.+
T Consensus 74 dleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeA 126 (146)
T 2xnx_M 74 EQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDA 126 (146)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------------
T ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444444555555555566667777777777777766666655555543
No 301
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.71 E-value=43 Score=24.66 Aligned_cols=25 Identities=12% Similarity=0.124 Sum_probs=11.5
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 109 IEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 109 ~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.....|..+...++.++++.-++++
T Consensus 35 ~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 35 RLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555544444444
No 302
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=30.66 E-value=51 Score=25.38 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=15.9
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
+..|+.|..+|..+=..|...|..++++|+..
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555544
No 303
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=30.54 E-value=52 Score=25.34 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhh
Q 026212 82 LLKDLFSQIESLNKENASLLSESHYVTIEKNELKEE 117 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdE 117 (241)
-+..|+.+++.|..+-..|.+.++.+.+....|.++
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466788888888887777777777777776666655
No 304
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=30.24 E-value=78 Score=30.76 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=20.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 113 ELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 113 eLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
.|.++...|+.+...++.++...+.
T Consensus 109 ~~~~~i~~~e~~~~~~~~~~~~~l~ 133 (522)
T 3vbb_A 109 LIDEAILKCDAERIKLEAERFENLR 133 (522)
T ss_dssp HHHHSCCCCHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999988653
No 305
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.89 E-value=79 Score=23.89 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=3.3
Q ss_pred hHhHHHhh
Q 026212 53 NDLFLDLA 60 (241)
Q Consensus 53 NerF~~L~ 60 (241)
.+.+..|+
T Consensus 39 kEqL~~LK 46 (84)
T 1gmj_A 39 KEQLAALK 46 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 306
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=29.86 E-value=71 Score=29.51 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQS 130 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ 130 (241)
.|+.++++|......|+++++.-..+-.+|..+.+.||-++-.|..
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 3555555666655666665555555555555555666555544443
No 307
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=29.67 E-value=1.5e+02 Score=21.00 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhccc--hhhhHHHHhhhhhhh---------hhhhhHHHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLL--SESHYVTIEKNELKE---------ENSSLESQIEVLQSELR 133 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~--ees~~L~~EKneLRd---------Ek~~Lk~e~e~Le~qlk 133 (241)
++-|.+.|..|++....|- -+|.+|+..-.||+. |......|..+|+.+++
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 4555666666655444432 133333333333322 33344555556665554
No 308
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=29.62 E-value=71 Score=23.77 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhh
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSL 121 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~L 121 (241)
+..-|++|+.+-..|+.....|+..+..-+.+.+.++.|...+
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777776666666665555554433
No 309
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=29.52 E-value=70 Score=25.24 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+.+|+.++ ..+++.|+...+ .+.....++++....+...+..+++++
T Consensus 96 ~~eA~~~l---~~ri~~l~~~l~-------~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 96 IDEAISFL---EKRLKEYDEAIK-------KTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp HHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777774 345555544333 333344444555555555555555443
No 310
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=29.41 E-value=13 Score=36.08 Aligned_cols=8 Identities=25% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 026212 124 QIEVLQSE 131 (241)
Q Consensus 124 e~e~Le~q 131 (241)
|++.|+++
T Consensus 406 e~~~l~~~ 413 (575)
T 2i1j_A 406 ERQKLEDE 413 (575)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33444433
No 311
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.43 E-value=1.1e+02 Score=26.86 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=45.5
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
.+...|..-....++.++++...|......+++|++.+..-.-+.|...+.|+..-+++--+++
T Consensus 160 asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQ 223 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 4556666666777788888888888877777777777777777777777777766665544443
No 312
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=28.24 E-value=51 Score=28.53 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhhccch
Q 026212 82 LLKDLFSQIESLNKENASLLS 102 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~e 102 (241)
-|.+|+.++++|+...-.++.
T Consensus 67 ~l~~l~~e~~el~d~~lR~~A 87 (213)
T 4ani_A 67 QIAELEAKLSEMEHRYLRLYA 87 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 313
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=27.87 E-value=58 Score=25.68 Aligned_cols=10 Identities=10% Similarity=0.268 Sum_probs=4.7
Q ss_pred HhHHHhhhcc
Q 026212 54 DLFLDLANAV 63 (241)
Q Consensus 54 erF~~L~slL 63 (241)
+...+++.+|
T Consensus 14 ~~l~~~a~~L 23 (171)
T 2zvf_A 14 RLLREASSIL 23 (171)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 3444455544
No 314
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=27.79 E-value=1.4e+02 Score=22.72 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=9.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le~qlk~r 135 (241)
|-.+-..|..+--+++.++..+
T Consensus 69 L~~dF~~l~~~fQ~~qr~y~ek 90 (97)
T 1hs7_A 69 LSADFKNLKTKYQSLQQSYNQR 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 315
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.36 E-value=1.5e+02 Score=27.81 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=5.1
Q ss_pred hhHhHHHhhhcc
Q 026212 52 LNDLFLDLANAV 63 (241)
Q Consensus 52 LNerF~~L~slL 63 (241)
+...|.+|-.+|
T Consensus 36 V~~~l~~LE~~l 47 (409)
T 1m1j_C 36 TDGELLEIEGLL 47 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 334444444443
No 316
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=27.16 E-value=63 Score=23.97 Aligned_cols=26 Identities=35% Similarity=0.279 Sum_probs=12.1
Q ss_pred hccchhhhHHHHhhhhhhhhhhhhHH
Q 026212 98 ASLLSESHYVTIEKNELKEENSSLES 123 (241)
Q Consensus 98 ~~L~ees~~L~~EKneLRdEk~~Lk~ 123 (241)
+.|..|+-.+..|-|=|++..+.|++
T Consensus 49 ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 49 ERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34555555555555555555555544
No 317
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=27.12 E-value=49 Score=23.98 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=14.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH
Q 026212 112 NELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 112 neLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
.+|+.+...|+.+.+.|+.+++.
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666665
No 318
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.00 E-value=51 Score=26.06 Aligned_cols=38 Identities=11% Similarity=-0.000 Sum_probs=25.4
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVLQSELRARVV 137 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r~~ 137 (241)
|..++..|......|.+....++.++..++..++....
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777777777777777777777766543
No 319
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=26.65 E-value=1.2e+02 Score=23.51 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=7.9
Q ss_pred hHHHhhHhHHHh
Q 026212 48 KREHLNDLFLDL 59 (241)
Q Consensus 48 RRdkLNerF~~L 59 (241)
|+.-|++|---|
T Consensus 26 KkkiLaER~kpL 37 (106)
T 1j1d_B 26 KKKILAERRKVL 37 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC
Confidence 455777877655
No 320
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.24 E-value=90 Score=21.99 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 026212 82 LLKDLFSQIESLNKENASLL 101 (241)
Q Consensus 82 ylk~Lr~~v~~Lk~~n~~L~ 101 (241)
.|-.|+.+|++|+.++..+.
T Consensus 11 tVYaLkDqV~eL~qe~k~m~ 30 (56)
T 2w6b_A 11 TVYALKDEVQELRQDNKKMK 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567778888877666544
No 321
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.01 E-value=3.7e+02 Score=26.10 Aligned_cols=84 Identities=11% Similarity=0.141 Sum_probs=48.0
Q ss_pred HhHHHhhhccCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHHh----hhccchhhhHHHHhh-------hhhhhhhhhh
Q 026212 54 DLFLDLANAVEVNQ-PNNGKACVLNEAARLLKDLFSQIESLNKE----NASLLSESHYVTIEK-------NELKEENSSL 121 (241)
Q Consensus 54 erF~~L~slL~P~~-~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~----n~~L~ees~~L~~EK-------neLRdEk~~L 121 (241)
.++.+|+..|.... ...+=-+......+++++-..+++..+.- ...|+..+.+|+... +-||.-...+
T Consensus 65 ~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q 144 (491)
T 1m1j_A 65 QRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQ 144 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554442221 24444555666777777777777666532 234555555555444 3456666667
Q ss_pred HHHHHHHHHHHHHHHh
Q 026212 122 ESQIEVLQSELRARVV 137 (241)
Q Consensus 122 k~e~e~Le~qlk~r~~ 137 (241)
..+|.+||.-+..-++
T Consensus 145 ~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 145 VVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778888877665544
No 322
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=25.71 E-value=2.3e+02 Score=22.62 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=27.5
Q ss_pred HHHhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 026212 44 REKLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLN 94 (241)
Q Consensus 44 rER~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk 94 (241)
.-+.|.+.||++...|..++ ..+..-|.+|..+ .+....++++.
T Consensus 78 ~i~~~~~~l~~~W~~L~~~~------~~R~~~L~~a~~~-~~F~~~~~e~~ 121 (218)
T 3edu_A 78 TIAEWKDGLNEMWADLLELI------DTRMQLLAASYDL-HRYFYTGAEIL 121 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45677888999999998875 2455566666533 33444444443
No 323
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=25.56 E-value=29 Score=32.38 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=27.8
Q ss_pred HHhhHhHHHhhhc-cCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHH--H-hhhhhhhhhhhhHHH
Q 026212 50 EHLNDLFLDLANA-VEVNQ-PNNGKACVLNEAARLLKDLFSQIESLNKENASLLSESHYVT--I-EKNELKEENSSLESQ 124 (241)
Q Consensus 50 dkLNerF~~L~sl-L~P~~-~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~--~-EKneLRdEk~~Lk~e 124 (241)
+.+.++|.+|-.. -+|+. ...+++.-|..-..-|+.+-...++++...+.+.+ ..+|- . -+.+..+|...|+.+
T Consensus 10 ~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~-~~el~eD~e~~~~a~~e~~~l~~~ 88 (360)
T 2b3t_B 10 EALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIET-AQMMLDDPEMREMAQDELREAKEK 88 (360)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC------------------------------
T ss_pred HHHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3455666666553 34554 44566655555555555555555555433332221 12221 1 123355667777777
Q ss_pred HHHHHHHHHH
Q 026212 125 IEVLQSELRA 134 (241)
Q Consensus 125 ~e~Le~qlk~ 134 (241)
++.|+.+|+.
T Consensus 89 ~~~le~~l~~ 98 (360)
T 2b3t_B 89 SEQLEQQLQV 98 (360)
T ss_dssp ------CCCC
T ss_pred HHHHHHHHHh
Confidence 7777777665
No 324
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.03 E-value=25 Score=33.07 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=11.6
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
|+.+.+.|..|.+.|+.|+.+++.|+..++.+++
T Consensus 30 l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~ 63 (434)
T 4b4t_M 30 LQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIK 63 (434)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555544444
No 325
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=24.90 E-value=1.9e+02 Score=23.79 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026212 81 RLLKDLFSQIESLNKEN 97 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n 97 (241)
+-|..|...|+.|+...
T Consensus 98 Rsv~kLEk~id~lEd~L 114 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 326
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.64 E-value=1.4e+02 Score=21.55 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 87 FSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 87 r~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
..+.+.+......|+.++..++.+....-.|-+.|-.=|-.|+.++-.
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444455555555555433
No 327
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.46 E-value=1.6e+02 Score=23.09 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=11.6
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 026212 107 VTIEKNELKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 107 L~~EKneLRdEk~~Lk~e~e~Le~qlk 133 (241)
|...+.+|.++...|+.-+..|+..+.
T Consensus 100 l~~~~~~l~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 100 MKQQEANVLQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 328
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.40 E-value=85 Score=23.99 Aligned_cols=20 Identities=5% Similarity=0.205 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhhhccchh
Q 026212 84 KDLFSQIESLNKENASLLSE 103 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ee 103 (241)
.+|....+.|+.+...|++.
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~ 23 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQ 23 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333
No 329
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=24.20 E-value=55 Score=30.14 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=7.6
Q ss_pred hhhhhhhhHHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQS 130 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le~ 130 (241)
|+++...|+.+++.++.
T Consensus 425 l~~~~~~~~~~~~~~~~ 441 (468)
T 3pxg_A 425 LRDTEQRLREQVEDTKK 441 (468)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 330
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=24.13 E-value=41 Score=23.28 Aligned_cols=21 Identities=38% Similarity=0.297 Sum_probs=16.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHH
Q 026212 115 KEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 115 RdEk~~Lk~e~e~Le~qlk~r 135 (241)
.+|..+|..||++|+.|-..-
T Consensus 5 ~EEILRLErEIE~Lqrqke~~ 25 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQ 25 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999998876653
No 331
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=24.12 E-value=2.7e+02 Score=23.49 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=24.2
Q ss_pred HhHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 026212 54 DLFLDLANAVEVNQPNNGKACVLNEAARLLKDLFSQIESLNKENA 98 (241)
Q Consensus 54 erF~~L~slL~P~~~K~DKasIL~DAI~ylk~Lr~~v~~Lk~~n~ 98 (241)
+.+.-|+..++-|. ..||.-+.. .||+=|+++...|+...+
T Consensus 55 ~k~~qlre~~d~gt-t~~~i~~m~---~yI~llrErea~lEqkVa 95 (169)
T 3k29_A 55 QKIRQLREQLDDGT-TSDAILKMK---AYIKVVAIQLSEEEEKVN 95 (169)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CcHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45677888775554 444444333 455557777777765443
No 332
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=23.95 E-value=76 Score=26.43 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=11.4
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
+..|+.||..++++...-+.+...|..|
T Consensus 7 ~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q 34 (155)
T 2aze_A 7 CQNLEVERQRRLERIKQKQSQLQELILQ 34 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444334444444333
No 333
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.92 E-value=1.8e+02 Score=22.74 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=12.1
Q ss_pred hhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 102 SESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 102 ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
+....|..+..+|..-...|...+...+..
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433333
No 334
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=23.74 E-value=1.4e+02 Score=27.03 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhhccch
Q 026212 81 RLLKDLFSQIESLNKENASLLS 102 (241)
Q Consensus 81 ~ylk~Lr~~v~~Lk~~n~~L~e 102 (241)
+|+..|++++++|+.+.+.+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALK 268 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666655543
No 335
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=23.74 E-value=2.3e+02 Score=21.70 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=16.8
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHH
Q 026212 110 EKNELKEENSSLESQIEVLQSELRA 134 (241)
Q Consensus 110 EKneLRdEk~~Lk~e~e~Le~qlk~ 134 (241)
...+|-||.++|-.||..+|.+++.
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~e 77 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKE 77 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666677777778888864
No 336
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=23.69 E-value=41 Score=24.78 Aligned_cols=62 Identities=21% Similarity=0.129 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhh-------------hhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 74 CVLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEK-------------NELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 74 sIL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EK-------------neLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
.-..|||.||+.++.+-+.--+-.....+-.+..+.+. .++-++...|=.+-..|-..+..+
T Consensus 5 ~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~F 79 (85)
T 1e91_A 5 VEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQF 79 (85)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34789999999999886552233333333333333332 234455555555555555555554
No 337
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.56 E-value=4.4e+02 Score=25.21 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=13.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQSELRARV 136 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le~qlk~r~ 136 (241)
|++....|+..|.+|+..+....
T Consensus 173 L~~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 173 LRAVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666666666665543
No 338
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=23.41 E-value=2.3e+02 Score=22.38 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccchhhhHH
Q 026212 80 ARLLKDLFSQIESLNKENASLLSESHYV 107 (241)
Q Consensus 80 I~ylk~Lr~~v~~Lk~~n~~L~ees~~L 107 (241)
-..-++|+..++.++...+.|.+-+..+
T Consensus 66 ~~~~~EL~~~l~sie~dLeDLe~sI~iv 93 (130)
T 4dnd_A 66 DWTTNELRNGLRSIEWDLEDLEETIGIV 93 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777776666554
No 339
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=23.25 E-value=96 Score=18.78 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=15.9
Q ss_pred CchhhhHHHHHHHHHHHHHHH
Q 026212 70 NGKACVLNEAARLLKDLFSQI 90 (241)
Q Consensus 70 ~DKasIL~DAI~ylk~Lr~~v 90 (241)
++...+|-+|.+||-+...+.
T Consensus 2 ~~nvq~LLeAAeyLErrEre~ 22 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERREREA 22 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 456788999999988766543
No 340
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.23 E-value=1.2e+02 Score=20.75 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVT 108 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~ 108 (241)
-.+|-.+|.+|+..+..+.+|+.-|+
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 34556677777766666666655553
No 341
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.21 E-value=64 Score=30.17 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhH
Q 026212 84 KDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 84 k~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
++++.++.++......|+.+.+.|..+...+++|...|+
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 28 QETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQ 66 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444444444444444444444443
No 342
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.91 E-value=40 Score=29.25 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=8.5
Q ss_pred HHHHhhhccchhhhHHHHh
Q 026212 92 SLNKENASLLSESHYVTIE 110 (241)
Q Consensus 92 ~Lk~~n~~L~ees~~L~~E 110 (241)
.|.++|+.|.++...|+.+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~ 41 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQL 41 (255)
T ss_dssp ---CTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666665555544433
No 343
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.88 E-value=67 Score=25.23 Aligned_cols=25 Identities=12% Similarity=0.023 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhhccchhhhHHHHh
Q 026212 86 LFSQIESLNKENASLLSESHYVTIE 110 (241)
Q Consensus 86 Lr~~v~~Lk~~n~~L~ees~~L~~E 110 (241)
|+.++...+.+...|.+++.+|+..
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ 33 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGT 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333333333
No 344
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.72 E-value=51 Score=24.92 Aligned_cols=20 Identities=40% Similarity=0.424 Sum_probs=8.1
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 026212 114 LKEENSSLESQIEVLQSELR 133 (241)
Q Consensus 114 LRdEk~~Lk~e~e~Le~qlk 133 (241)
|+.+...|+.++..|+.++.
T Consensus 6 L~~~i~~L~~q~~~L~~ei~ 25 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQ 25 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 345
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=22.65 E-value=2.1e+02 Score=23.95 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 026212 79 AARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSELRAR 135 (241)
Q Consensus 79 AI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~qlk~r 135 (241)
-...|+.|...-+.|........+..++|..+.|.|+=+...|...++..-.-|+.+
T Consensus 101 LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~ 157 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQK 157 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHc
Confidence 345567778888899999988888999999999999999999999888877777663
No 346
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=22.51 E-value=77 Score=31.08 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=17.8
Q ss_pred hhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 96 ENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 96 ~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+...+.+++..+..+..+|+.....++.++.++-..+
T Consensus 360 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 396 (695)
T 2j69_A 360 DVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQ 396 (695)
T ss_dssp CSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555554444333
No 347
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.22 E-value=89 Score=25.44 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 026212 77 NEAARLLKDLFSQIESLNKENA 98 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~ 98 (241)
..|=.||.+-+.+-..++..|.
T Consensus 85 eEAN~MVa~ar~~~~~~e~r~~ 106 (135)
T 2e7s_A 85 DEANNLVADARMEKYAIEILNK 106 (135)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 348
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.15 E-value=1.1e+02 Score=22.80 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=24.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhcc--chh-hhHHHHhhhhhhhhhhh-hHHHHHHH
Q 026212 71 GKACVLNEAARLLKDLFSQIESLNKENASL--LSE-SHYVTIEKNELKEENSS-LESQIEVL 128 (241)
Q Consensus 71 DKasIL~DAI~ylk~Lr~~v~~Lk~~n~~L--~ee-s~~L~~EKneLRdEk~~-Lk~e~e~L 128 (241)
.|-..|.++=+.|.+..+=+++++-+...+ ... -..++....+-+.+... ||.+..+|
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444433 111 11223333334444555 55555544
No 349
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.96 E-value=41 Score=24.36 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=10.4
Q ss_pred hhHHHHhhhhhhhhhhhhHHHHHH
Q 026212 104 SHYVTIEKNELKEENSSLESQIEV 127 (241)
Q Consensus 104 s~~L~~EKneLRdEk~~Lk~e~e~ 127 (241)
+++|..+.++=.+|...|+.++.+
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 350
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=21.93 E-value=2.2e+02 Score=20.36 Aligned_cols=49 Identities=8% Similarity=0.182 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhccchhhhHHHHhhh----hhhhhhhhhH---HHHHHHHHHHHHHH
Q 026212 88 SQIESLNKENASLLSESHYVTIEKN----ELKEENSSLE---SQIEVLQSELRARV 136 (241)
Q Consensus 88 ~~v~~Lk~~n~~L~ees~~L~~EKn----eLRdEk~~Lk---~e~e~Le~qlk~r~ 136 (241)
.+.+.|+.+.+.+.+++..+..|++ .||+-..... .+...|...++..+
T Consensus 9 kkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~IL 64 (75)
T 3mtu_A 9 KKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVDIL 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444455555555555556655554 5555222111 12234555555554
No 351
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=21.87 E-value=2.6e+02 Score=24.68 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 75 VLNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 75 IL~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
||.|=-..|.+++.++..-+..+..-.+.+..+....-.-..+...|+.++..|+..+
T Consensus 78 iL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 78 ELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccc
Confidence 5777777788888888777776665555555555555555555556666666666655
No 352
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=21.48 E-value=51 Score=21.06 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=17.6
Q ss_pred cchhhhHHHHhhhhhhhhhhhhHHHHHHH
Q 026212 100 LLSESHYVTIEKNELKEENSSLESQIEVL 128 (241)
Q Consensus 100 L~ees~~L~~EKneLRdEk~~Lk~e~e~L 128 (241)
++++-..|-.||..|+..+..|+.-++.|
T Consensus 5 lq~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 5 VQAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444556666767777777666665543
No 353
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=21.16 E-value=2.7e+02 Score=23.27 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred HhhHHHhhHhHHHhhhccCCCCCCCchhhhHHHHH---HHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhH
Q 026212 46 KLKREHLNDLFLDLANAVEVNQPNNGKACVLNEAA---RLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 46 R~RRdkLNerF~~L~slL~P~~~K~DKasIL~DAI---~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
+.+.+.||++...|..++ .++...|.+|. +|..++..-..-|......|.+.+..--.....+...-..++
T Consensus 85 ~~~~~~l~~~W~~L~~~~------~~R~~~L~~a~~~~~f~~~~~e~~~Wl~~k~~~l~~~~~~d~~~v~~l~~~h~~~~ 158 (323)
T 3edv_A 85 AEWKDGLNEAWADLLELI------DTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFE 158 (323)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 026212 123 SQIEVLQSELRA 134 (241)
Q Consensus 123 ~e~e~Le~qlk~ 134 (241)
.++...+.++..
T Consensus 159 ~~l~~~~~~v~~ 170 (323)
T 3edv_A 159 HDIQALGTQVRQ 170 (323)
T ss_dssp HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
No 354
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=21.14 E-value=2.1e+02 Score=22.37 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhhccchhhhHHHH
Q 026212 85 DLFSQIESLNKENASLLSESHYVTI 109 (241)
Q Consensus 85 ~Lr~~v~~Lk~~n~~L~ees~~L~~ 109 (241)
+|-.+.=+|+...+.++++.+-|..
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666655554
No 355
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.08 E-value=1.8e+02 Score=27.51 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhH
Q 026212 76 LNEAARLLKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLE 122 (241)
Q Consensus 76 L~DAI~ylk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk 122 (241)
...+++|=+...+++.+++..+......|++|....+..+.....|+
T Consensus 79 ~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~ 125 (411)
T 3ghg_C 79 IDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLK 125 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888877666666666666554433333333333
No 356
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.03 E-value=1.7e+02 Score=19.73 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 026212 77 NEAARLLKDLFSQIESLNKENA 98 (241)
Q Consensus 77 ~DAI~ylk~Lr~~v~~Lk~~n~ 98 (241)
.-|=+-|..|+.+|+.|+.+..
T Consensus 8 efAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667777666665443
No 357
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=20.94 E-value=1.9e+02 Score=21.26 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 026212 85 DLFSQIESLN 94 (241)
Q Consensus 85 ~Lr~~v~~Lk 94 (241)
.|.+++.+|.
T Consensus 44 ~L~eE~gEl~ 53 (111)
T 2oie_A 44 ALVGEVGELA 53 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 358
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.73 E-value=91 Score=21.74 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=22.0
Q ss_pred hccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 026212 98 ASLLSESHYVTIEKNELKEENSSLESQIEVLQSEL 132 (241)
Q Consensus 98 ~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~ql 132 (241)
+.|-..+..|+.|-.-||.|...=-.++.+||.+-
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~et 40 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEA 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhh
Confidence 34445566677776667777666666666676654
No 359
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=20.37 E-value=1.2e+02 Score=18.09 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 026212 73 ACVLNEAARLLKDLFSQIE 91 (241)
Q Consensus 73 asIL~DAI~ylk~Lr~~v~ 91 (241)
+|.|.+|-.|+.+|-.++.
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 5778899999999877653
No 360
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.28 E-value=1.2e+02 Score=24.47 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccchhhhHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 026212 83 LKDLFSQIESLNKENASLLSESHYVTIEKNELKEENSSLESQIEVLQSE 131 (241)
Q Consensus 83 lk~Lr~~v~~Lk~~n~~L~ees~~L~~EKneLRdEk~~Lk~e~e~Le~q 131 (241)
|++|-.+++.+.-....+. .+.=..-..++.+|+..|..+|++|..+
T Consensus 12 iq~L~drLD~~~rKlaaa~--~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 12 IKRLSDRLDAIRHQQADLS--LVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHSC--TTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHH
No 361
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=20.04 E-value=3.2e+02 Score=23.93 Aligned_cols=17 Identities=6% Similarity=0.134 Sum_probs=7.7
Q ss_pred HHhhHhHHHhhhccCCC
Q 026212 50 EHLNDLFLDLANAVEVN 66 (241)
Q Consensus 50 dkLNerF~~L~slL~P~ 66 (241)
+++.++..+|+..|.|-
T Consensus 128 ~k~~~~leeLr~~l~P~ 144 (273)
T 3s84_A 128 VKIDQTVEELRRSLAPY 144 (273)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhhH
Confidence 34444444444444443
Done!