Query 026213
Match_columns 241
No_of_seqs 126 out of 1154
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wnr_B Probable exosome comple 100.0 9.3E-57 3.2E-61 377.6 28.7 232 1-233 8-239 (240)
2 2nn6_B Exosome complex exonucl 100.0 1E-56 3.4E-61 379.3 28.6 239 1-239 8-247 (249)
3 2po1_A Probable exosome comple 100.0 7.4E-56 2.5E-60 374.0 28.6 235 1-236 8-242 (249)
4 2wp8_B Exosome complex compone 100.0 1.2E-55 4.1E-60 372.2 26.6 236 1-237 4-241 (246)
5 2je6_B RRP41, exosome complex 100.0 6.5E-55 2.2E-59 368.5 27.8 233 2-235 13-245 (250)
6 3m7n_D Probable exosome comple 100.0 1.5E-54 5.1E-59 366.9 27.1 231 2-234 10-243 (258)
7 2nn6_F MTR3, exosome component 100.0 3.2E-52 1.1E-56 356.0 20.5 236 2-238 19-269 (272)
8 2nn6_D Exosome complex exonucl 100.0 2.4E-50 8.4E-55 337.9 25.6 219 5-233 12-235 (237)
9 3dd6_A Ribonuclease PH; exorib 100.0 4E-49 1.4E-53 333.3 25.8 226 7-234 9-253 (255)
10 3b4t_A Ribonuclease PH; RNAse, 100.0 2E-49 6.8E-54 337.0 24.0 227 6-234 3-248 (262)
11 1oys_A Ribonuclease PH; transf 100.0 1.5E-49 5E-54 334.8 21.6 224 9-234 1-243 (245)
12 1udn_A Ribonuclease PH, RNAse 100.0 2.1E-48 7.1E-53 329.4 26.2 220 9-230 1-238 (255)
13 1r6l_A Ribonuclease PH; beta-a 100.0 2.4E-48 8.1E-53 326.3 26.4 218 10-229 3-238 (239)
14 2po1_B Probable exosome comple 100.0 5.5E-48 1.9E-52 330.7 26.7 223 5-232 22-276 (277)
15 3hkm_A OS03G0854200 protein; R 100.0 4.8E-48 1.7E-52 324.9 24.0 219 7-237 2-239 (246)
16 3m7n_G Probable exosome comple 100.0 1.8E-47 6.1E-52 324.4 26.1 218 5-226 18-258 (259)
17 2je6_A RRP42, exosome complex 100.0 1.7E-47 5.9E-52 327.6 26.1 222 4-229 24-276 (277)
18 2wnr_A Probable exosome comple 100.0 3.6E-47 1.2E-51 324.7 25.9 221 4-229 19-270 (271)
19 2nn6_C Exosome complex exonucl 100.0 9.8E-48 3.3E-52 329.4 19.9 223 5-231 20-275 (278)
20 2nn6_E Exosome complex exonucl 100.0 2.2E-46 7.4E-51 324.7 17.3 228 5-236 32-296 (305)
21 2nn6_A Polymyositis/scleroderm 100.0 3.9E-45 1.3E-49 321.8 25.2 226 5-237 35-295 (358)
22 2wp8_A Exosome complex compone 100.0 5.7E-45 1.9E-49 315.9 23.7 226 5-237 19-292 (305)
23 3gme_A Polyribonucleotide nucl 100.0 3E-45 1E-49 335.3 21.9 228 2-232 307-545 (549)
24 4aid_A Polyribonucleotide nucl 100.0 1.2E-43 4E-48 333.6 24.2 227 2-231 323-560 (726)
25 3u1k_A Polyribonucleotide nucl 100.0 3.3E-43 1.1E-47 327.6 24.6 226 2-231 311-557 (630)
26 1e3p_A Guanosine pentaphosphat 100.0 2.5E-43 8.6E-48 333.7 24.2 227 2-231 348-589 (757)
27 3cdi_A Polynucleotide phosphor 100.0 7.4E-43 2.5E-47 329.5 24.7 229 2-233 313-552 (723)
28 3krn_A Protein C14A4.5, confir 100.0 9.4E-46 3.2E-50 307.0 -0.2 209 16-236 2-213 (222)
29 3u1k_A Polyribonucleotide nucl 100.0 1.2E-33 4E-38 263.4 23.6 209 18-234 13-230 (630)
30 3gme_A Polyribonucleotide nucl 100.0 1.5E-28 5.1E-33 225.0 25.9 207 19-233 13-228 (549)
31 4aid_A Polyribonucleotide nucl 100.0 2.4E-28 8.1E-33 229.9 25.1 206 18-233 26-242 (726)
32 3cdi_A Polynucleotide phosphor 100.0 4E-28 1.4E-32 229.2 25.3 206 20-233 20-234 (723)
33 1e3p_A Guanosine pentaphosphat 100.0 1.6E-27 5.3E-32 226.0 23.6 209 19-233 36-269 (757)
34 2k9i_A Plasmid PRN1, complete 60.7 6.9 0.00024 23.4 2.8 38 200-237 15-52 (55)
35 2kel_A SVTR protein, uncharact 49.3 9.2 0.00032 23.5 1.9 35 201-235 20-54 (56)
36 1xpp_A TA1416, DNA-directed RN 36.5 99 0.0034 21.9 6.0 44 191-234 63-106 (115)
37 2gpe_A Bifunctional protein PU 33.8 24 0.00081 20.8 2.0 40 200-239 9-48 (52)
38 1ybx_A Conserved hypothetical 29.4 1.7E+02 0.0058 21.5 7.4 46 173-219 70-119 (143)
39 2cpg_A REPA protein, transcrip 29.1 34 0.0012 19.2 2.1 35 200-234 8-42 (45)
40 2ba3_A NIKA; dimer, bacterial 27.1 41 0.0014 19.7 2.3 29 201-229 22-50 (51)
41 1baz_A ARC repressor; transcri 24.2 75 0.0026 18.9 3.1 36 200-235 13-48 (53)
42 2k5j_A Uncharacterized protein 21.6 88 0.003 20.3 3.3 36 200-235 15-50 (80)
No 1
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=9.3e-57 Score=377.61 Aligned_cols=232 Identities=44% Similarity=0.733 Sum_probs=212.8
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccc
Q 026213 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (241)
Q Consensus 1 ~~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~ 80 (241)
||+++++|+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|++|.+...|....++++.+.++|+++|++++
T Consensus 8 ~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~ 87 (240)
T 2wnr_B 8 DQLKTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVE 87 (240)
T ss_dssp -------CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSS
T ss_pred eEeecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcC
Confidence 79999999999999999999999999999999999999999999999999998876666667899999999999999998
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEee
Q 026213 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (241)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~ 160 (241)
+++ .++++.++.+++++|+++|+++++++.||+|+|+|+++||++|||+++|+++|+++||+|+|+||+++|+++|+|+
T Consensus 88 ~~~-~~~~~~~~~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~avs~g~ 166 (240)
T 2wnr_B 88 ERK-RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGK 166 (240)
T ss_dssp SCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEE
T ss_pred Ccc-CCCCChhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccccceeeEEEEE
Confidence 876 5578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 161 LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233 (241)
Q Consensus 161 ~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~ 233 (241)
+++.+++||+..||..+++.++|+++++.++++.++++|.++++++.++++.|.++++++++.++++|.++.+
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 239 (240)
T 2wnr_B 167 VGDQVVLDLSEEEDKEGQADVPVAILPRTREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKRYG 239 (240)
T ss_dssp SSSSEEESCCSHHHHSCSEEEEEEEETTTTEEEEEEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ECCEEEeCCCHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998788899999999999999999999999999999999999999988754
No 2
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1e-56 Score=379.28 Aligned_cols=239 Identities=50% Similarity=0.860 Sum_probs=221.2
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCcccccc-ccCCCCceEEEEEEeecCCcc
Q 026213 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNK-SQQMSDQALVRCEYSMANFST 79 (241)
Q Consensus 1 ~~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~-~~~~~~~~~i~v~~~~~~~~~ 79 (241)
||||+++|+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|++|.+.+.+ ....++++.+.++|+++|+++
T Consensus 8 ~~~i~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~ 87 (249)
T 2nn6_B 8 LELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFST 87 (249)
T ss_dssp ---CCBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTS
T ss_pred hhhcccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcc
Confidence 7999999999999999999999999999999999999999999999999998765332 234688999999999999999
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEe
Q 026213 80 GDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAG 159 (241)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~ 159 (241)
+++.+.++++.++.+++++|+++|+++++++.||+|+|+|+++||++|||+++|++||+++||+|+||||+++|+++|+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~avs~g 167 (249)
T 2nn6_B 88 GERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAG 167 (249)
T ss_dssp SSCCCTTTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEEEEE
T ss_pred cccccCCCCCHhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcccCCeeeEEEE
Confidence 98876778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026213 160 YLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRR 239 (241)
Q Consensus 160 ~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~~~~ 239 (241)
++++.+++||+..||..+.+.++|+++++.++++.++++|+++.+++.+++++|.++++++++.++++|.++.++.....
T Consensus 168 ~~~~~~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~~~ 247 (249)
T 2nn6_B 168 FVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAARDVHTLLDRVVRQHVREASILL 247 (249)
T ss_dssp EETTEEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECSCCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred EECCeEEECCChHHhccCCcEEEEEEECCCCCEEEEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999998778899999999999999999999999999999999999999999988765443
No 3
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=7.4e-56 Score=373.95 Aligned_cols=235 Identities=47% Similarity=0.765 Sum_probs=222.1
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccc
Q 026213 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (241)
Q Consensus 1 ~~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~ 80 (241)
||+++++|+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|+||.+...|....++++.+.++|+++|++++
T Consensus 8 ~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~ 87 (249)
T 2po1_A 8 LKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVE 87 (249)
T ss_dssp -CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSS
T ss_pred eEEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccc
Confidence 68999999999999999999999999999999999999999999999999998876656677899999999999999998
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEee
Q 026213 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (241)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~ 160 (241)
+++ .+.++.++.+++++|+++|+++++++.||+|.|+|+++||++||++++|+++|+++||+|+||||+++|+++++|+
T Consensus 88 ~~~-~~~~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~ 166 (249)
T 2po1_A 88 ERK-KPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGK 166 (249)
T ss_dssp SCC-CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEE
T ss_pred ccc-CCCCCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEE
Confidence 765 3457889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 161 LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 236 (241)
Q Consensus 161 ~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~ 236 (241)
+++.+++||+..||..+++.++|+++++.+++++++++|.++++++.++++.|.++++++++.+++++.++.+++.
T Consensus 167 ~~~~~l~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~ 242 (249)
T 2po1_A 167 IEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDGYLTKDEFIEAVKLAIKGAKAVYQKQREALKEKYLKIA 242 (249)
T ss_dssp ETTEEEESCCHHHHHTCSEEEEEEEEGGGTEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCEEEecCcHHHhccCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999998778899999999999999999999999999999999999999999887654
No 4
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-55 Score=372.15 Aligned_cols=236 Identities=37% Similarity=0.600 Sum_probs=208.1
Q ss_pred CcccCCCCCCCCCCCCCCCcceEEEeCCCCCC-ceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcc
Q 026213 1 MEFVSPEGLRLDGRRPTEMRQLRAEIGNVAKA-DGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFST 79 (241)
Q Consensus 1 ~~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a-~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~ 79 (241)
||||+++|+|+|||.++|+|++.+++|+++++ +|||+|++|+|+|+|+|++|.+...+....++++.+.|+|+++|+++
T Consensus 4 ~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~ 83 (246)
T 2wp8_B 4 LEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSK 83 (246)
T ss_dssp CCSSCTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC----
T ss_pred hhhhcccCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccc
Confidence 89999999999999999999999999999999 99999999999999999998875455556789999999999999999
Q ss_pred cccCCC-CCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEE
Q 026213 80 GDRMRK-PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSA 158 (241)
Q Consensus 80 ~~~~~~-~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~ 158 (241)
+++.++ ++++.++.+++++|+++|+++++++.||+|.|+|+++||++||++++|++||+++||+++||||+++|+++++
T Consensus 84 ~~~~~r~g~~~~~~~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~~~~v~avs~ 163 (246)
T 2wp8_B 84 FERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISV 163 (246)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEE
T ss_pred ccccccCCCCChhHHHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcccCceeEEEE
Confidence 987655 5677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026213 159 GYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLEC 237 (241)
Q Consensus 159 ~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~~ 237 (241)
|++++.+++||+.+|| .+.+.++|+++++.+++++++++|+++.+++.++++.|.++++++++.+++++.++.++...
T Consensus 164 g~~~~~~l~Dp~~~Ee-~~~~~l~v~~~~~~~~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~ 241 (246)
T 2wp8_B 164 GLYDTTPLLDTNSLEE-NAMSTVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKHAQKRVS 241 (246)
T ss_dssp EEETTEEESSCCHHHH-HHSEEEEEEEETTSSCEEEEEECSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred EEECCEEEECCCchhh-ccCceEEEEEeCCCCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999 99999999887788999999999999999999999999999999999999999999887554
No 5
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=6.5e-55 Score=368.45 Aligned_cols=233 Identities=41% Similarity=0.747 Sum_probs=220.5
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccc
Q 026213 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~ 81 (241)
|||+++|+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|++|.+...|....++++.+.|+|+++|+++++
T Consensus 13 ~~~l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~ 92 (250)
T 2je6_B 13 KLILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDE 92 (250)
T ss_dssp CSBCTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSS
T ss_pred ceecCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCC
Confidence 78999999999999999999999999999999999999999999999999987765566678999999999999999988
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEeee
Q 026213 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~ 161 (241)
++ .++++.++.+++++|+++|+++++++.||+|.|+|+++||++||++++|+++|+++||+++|||++++|+++++|++
T Consensus 93 ~~-~g~~~~~e~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~v~avsvg~~ 171 (250)
T 2je6_B 93 RK-NPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA 171 (250)
T ss_dssp CC-CSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEEE
T ss_pred cc-CCCCChhHHHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEEE
Confidence 76 56788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 162 NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235 (241)
Q Consensus 162 ~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 235 (241)
++.+++|||.+||..+++.++|+++++.++|++++++|.++.+++.++++.|.++++++++++++++.++.+++
T Consensus 172 ~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~~i~~v~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~ 245 (250)
T 2je6_B 172 DGVIILDLNETEAMWGEADMPIAMMPSLNQVTLFQLNGSMTPDEFRQAFDLAVKGINIIYNLEREALKSKYVEF 245 (250)
T ss_dssp TTEEEESCCHHHHHHSSEEEEEEEEGGGTEEEEEEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC--
T ss_pred CCEEEeCCCHHHHhcCCceEEEEEECCCCCEEEEEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999877789999999999999999999999999999999999999999887665
No 6
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=1.5e-54 Score=366.86 Aligned_cols=231 Identities=43% Similarity=0.702 Sum_probs=217.2
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccc
Q 026213 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD 81 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~ 81 (241)
++|. +|.|+|||.++|+|++++++|++++++|||+|++|+|+|+|+|+||.+...+....++++.+.++|+++|+++++
T Consensus 10 ~~i~-~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~ 88 (258)
T 3m7n_D 10 KLIV-DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEE 88 (258)
T ss_dssp CSEE-TTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSS
T ss_pred HHHh-cCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCccccc
Confidence 5666 899999999999999999999999999999999999999999999988765555678999999999999999987
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEeee
Q 026213 82 RMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~ 161 (241)
+++ +.++.++.+++++|+++|+++++++.||+|.|+|+++||++||+.++|++||+++||+|+||||+++|+++++|++
T Consensus 89 r~~-~~~~~re~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsvg~i 167 (258)
T 3m7n_D 89 RKR-PGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKA 167 (258)
T ss_dssp CCC-SSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEEEEE
T ss_pred ccC-CCCCHHHHHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEE
Confidence 654 4688899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEeCCccccccCCCcEEEEEcCCC---CcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 162 NSTPLLDLNYVEDSAGGPDVTVGILPTL---DKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234 (241)
Q Consensus 162 ~~~~i~DPt~~Ee~~~~~~~~v~~~~~~---~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~ 234 (241)
++.+++||+..|+..++..++|++++.. ++|+.++++|.++++++.+++++|.++++++++.++++|.++.++
T Consensus 168 ~~~~llDpt~~Ee~~~~~d~~va~~~~~~~~~~I~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~ 243 (258)
T 3m7n_D 168 DGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAILRRYIE 243 (258)
T ss_dssp TTEEEESCCHHHHHHSSEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHhccCceEEEEEEcCCCCCCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999885566 899999999999999999999999999999999999999998775
No 7
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.2e-52 Score=356.00 Aligned_cols=236 Identities=27% Similarity=0.475 Sum_probs=208.5
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccC-----------CCCceEEEE
Q 026213 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQ-----------MSDQALVRC 70 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~-----------~~~~~~i~v 70 (241)
+|+.+++.|+|||.++|+|++++++|+++++||||+|++|+|+|+|+|++|.+.+...+. .++++.+.|
T Consensus 19 ~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v 98 (272)
T 2nn6_F 19 LYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLC 98 (272)
T ss_dssp ----------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEE
T ss_pred ccccccCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEE
Confidence 467789999999999999999999999999999999999999999999998866432211 567899999
Q ss_pred EEeecCCcccccCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCC
Q 026213 71 EYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMR 150 (241)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~ 150 (241)
+|.+.|+++++++. ++++.++.+++++|+++|+++++++.||+|.|+|+++||++||++++|++||+++||+++|||++
T Consensus 99 ~~~~~p~a~~~~~~-~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~~ 177 (272)
T 2nn6_F 99 DFRRAPFAGRRRRA-PPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMY 177 (272)
T ss_dssp EEEECTTSSSSCCC-SCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBS
T ss_pred EEEecCCCcCCccC-CCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccc
Confidence 99999999987654 57888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEee---eCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCH-HHHHHHHHHHHHHHHHHHHHHHH
Q 026213 151 DIVTSCSAGY---LNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPT-NTFEDVMQLAIEGCKAVANYIRE 226 (241)
Q Consensus 151 ~~~~~vs~~~---~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~-~~l~~~l~~a~~~~~~i~~~i~~ 226 (241)
++++++++++ .++.+|+|||..||..+...++|+++++.++|++++++|.++. +++.++++.|.++++++++++++
T Consensus 178 ~~v~avsvg~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~~~~I~~i~~~g~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 257 (272)
T 2nn6_F 178 DLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLGLEGCQRLYPVLQQ 257 (272)
T ss_dssp SCCEEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEECCSSCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEEeeccCCeEEeCCCHHHhccCCceEEEEEeCCCCCEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 8889999999999999999999998888899999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 026213 227 VLLENTKQLECR 238 (241)
Q Consensus 227 ~l~~~~~~~~~~ 238 (241)
++.++.+++.+.
T Consensus 258 ~l~~~~~~~~~~ 269 (272)
T 2nn6_F 258 SLVRAARRRGAA 269 (272)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHhhccc
Confidence 999999987764
No 8
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.4e-50 Score=337.88 Aligned_cols=219 Identities=26% Similarity=0.375 Sum_probs=187.4
Q ss_pred CCCCCCCCCCCCC----CCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccc
Q 026213 5 SPEGLRLDGRRPT----EMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTG 80 (241)
Q Consensus 5 ~~~~~R~DGR~~~----e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~ 80 (241)
+.+|+|+|||.++ |+|++.+++|++++++|||+|++|+|+|+|+|++|.+.+ |..+.++++.++++|. |+.
T Consensus 12 ~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~-~~~~~~~~g~l~~~~~--p~~-- 86 (237)
T 2nn6_D 12 KIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVK-VSKEIFNKATLEVILR--PKI-- 86 (237)
T ss_dssp ---------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC-------CCEEEEEEEE--CSS--
T ss_pred CccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCccc-ccccCCCcEEEEEEec--CCC--
Confidence 3568999999999 999999999999999999999999999999999988653 3445678898888775 543
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEee
Q 026213 81 DRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGY 160 (241)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~ 160 (241)
|+++.++++++++|+++|+++++++.||+|+|+|+++||++|||+++|++||+++||+|+||||+++|+++++|+
T Consensus 87 -----g~~~~~e~~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~ 161 (237)
T 2nn6_D 87 -----GLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACAL 161 (237)
T ss_dssp -----SCCCHHHHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCEEEEEEEE
T ss_pred -----CCCCccHHHHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCcccCeeeEEEEE
Confidence 356788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 161 L-NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233 (241)
Q Consensus 161 ~-~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~ 233 (241)
+ ++.+++||+..||..+.+.++|+++++.++++.+++.|.++.+++.+++++|.++++++++.++++|+++.+
T Consensus 162 ~~~~~~llDp~~~Ee~~~~~~~~v~~~~~~~~i~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~ 235 (237)
T 2nn6_D 162 DSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRYS 235 (237)
T ss_dssp CTTCCEEESCCHHHHHHCSEEEEEEEETTTCCCCEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ecCCcEEeCCCHHHHhccCCceEEEEcCCCCCEEEEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 789999999999999999999998877779999999999999999999999999999999999999998754
No 9
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=4e-49 Score=333.27 Aligned_cols=226 Identities=28% Similarity=0.392 Sum_probs=206.2
Q ss_pred CCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC--
Q 026213 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR-- 84 (241)
Q Consensus 7 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~-- 84 (241)
...|.|||.++|+|++++++|++++++|||++++|+|+|+|+|++|.+.+ +..+.+++|.+.++|+++|+++.++.+
T Consensus 9 ~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~v~~~~~P~a~~~~~~Re 87 (255)
T 3dd6_A 9 HHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVP-PFMRGEGKGWVTAEYAMIPRATEQRTIRE 87 (255)
T ss_dssp --CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCC-GGGTTSSCCEEEEEEEECTTSSSSCCCCC
T ss_pred cccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCC-CCCCCCCceEEEEEEEECCCccccccccc
Confidence 45899999999999999999999999999999999999999999976432 345668899999999999999988643
Q ss_pred --CCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhC-----------CCCCCC
Q 026213 85 --KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA-----------GIPMRD 151 (241)
Q Consensus 85 --~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~-----------gip~~~ 151 (241)
.|++++++.+++++|+++|+++++++.||+|+|+|+++||++||++++|++||+++||.++ +|||++
T Consensus 88 ~~~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~g~~~~iPl~~ 167 (255)
T 3dd6_A 88 SSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKD 167 (255)
T ss_dssp CC-CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBSS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhcCcccCCCccC
Confidence 2678899999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eeEEEEEeeeCCeeE-EeCCccccccCCCcEEEEEcCCCCcEEEEEeee---cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 152 IVTSCSAGYLNSTPL-LDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREV 227 (241)
Q Consensus 152 ~~~~vs~~~~~~~~i-~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~i~~~ 227 (241)
+|+++++|++++.++ +|||..||..++..++|++ +..++|++++++| .++.+++.++++.|.+.+++++++++++
T Consensus 168 ~v~avsvg~i~g~~vllDpt~~Ee~~~~~~l~Va~-~~~g~i~~vq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 246 (255)
T 3dd6_A 168 YLAATSVGIVEEQGVVLDLNYAEDSKADVDMNVIM-TGKGQFVEVQGTGEEATFSRAQLNELLDAAEQGIFQLIDIQKEA 246 (255)
T ss_dssp CEEEEEEEEETTTEEEESCCHHHHHTEEEEEEEEE-ETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEECCEEEEeCCCHHHHhhcCceEEEEE-cCCCcEEEEEecCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 9999999999999999975 6788999999864 5999999999999999999999999999
Q ss_pred HHHHHHH
Q 026213 228 LLENTKQ 234 (241)
Q Consensus 228 l~~~~~~ 234 (241)
+++..++
T Consensus 247 l~~~~~~ 253 (255)
T 3dd6_A 247 LGDIVSH 253 (255)
T ss_dssp HGGGGGG
T ss_pred HHHHHhh
Confidence 9876543
No 10
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2e-49 Score=336.97 Aligned_cols=227 Identities=28% Similarity=0.380 Sum_probs=205.4
Q ss_pred CCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCCC
Q 026213 6 PEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK 85 (241)
Q Consensus 6 ~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~ 85 (241)
..|+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|++|.+.+. ....++++++.|+|+++|++++++.++
T Consensus 3 ~~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~~g~l~v~~~~~p~a~~~~~~R 81 (262)
T 3b4t_A 3 HVSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPR-WRKATGLGWLTAEYAMLPSATHSRSDR 81 (262)
T ss_dssp --CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC-----CCSCCEEEEEEEECGGGSSSCCCC
T ss_pred CCCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCC-ccCCCCceEEEEEEEeCCCcccccccc
Confidence 3589999999999999999999999999999999999999999999764321 223368899999999999998876432
Q ss_pred ----CCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhC------------CCCC
Q 026213 86 ----PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDA------------GIPM 149 (241)
Q Consensus 86 ----~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~------------gip~ 149 (241)
|+++.++.+++++|+++|+++++++.||+|+|+|+++||++||++++|++||+++||+++ +|||
T Consensus 82 e~~~G~~~~~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~~ip~ 161 (262)
T 3b4t_A 82 ESVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPL 161 (262)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCB
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhccCCccccCCcc
Confidence 578899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCeeEEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee---cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 150 RDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIRE 226 (241)
Q Consensus 150 ~~~~~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~i~~ 226 (241)
+++|++++++++++.+++|||.+||..+...++|++ +..++++++++.| .++.+++.++++.|.++++++++.+++
T Consensus 162 ~~~v~avsvg~~~g~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~i~~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~ 240 (262)
T 3b4t_A 162 SCAIAAVSVGVVDGRIRVDLPYEEDSRAEVDMNVVA-TDTGTLVEIQGTGEGATFARSTLDKLLDMALGACDTLFAAQRD 240 (262)
T ss_dssp CSCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEE-ETTSCEEEEEECSSCCCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceeEEEEEEECCEEEECCCHHHHhccCceEEEEE-cCCCCEEEEEeeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 5678999999975 699999999999999999999999999
Q ss_pred HHHHHHHH
Q 026213 227 VLLENTKQ 234 (241)
Q Consensus 227 ~l~~~~~~ 234 (241)
+++++.++
T Consensus 241 ~l~~~~~~ 248 (262)
T 3b4t_A 241 ALALPYPG 248 (262)
T ss_dssp HHTSCCSS
T ss_pred HHhcchhc
Confidence 99876554
No 11
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=1.5e-49 Score=334.79 Aligned_cols=224 Identities=29% Similarity=0.381 Sum_probs=185.4
Q ss_pred CCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC----
Q 026213 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (241)
Q Consensus 9 ~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~---- 84 (241)
+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|++|.+.+ +....+++|.+.++|+++|++++++..
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~ 79 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVP-PFLRGGGKGWITAEYSMLPQATNQQTIQESS 79 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCC-GGGTTSCCCEEEEEEEC--------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccC-CccCCCCceEEEEEEEeCCCcCccccccccc
Confidence 499999999999999999999999999999999999999999976432 123457899999999999999987632
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCC-----------CCCCCee
Q 026213 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (241)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~g-----------ip~~~~~ 153 (241)
.|+++.++++++++|+++|+++++++.||+|.|+|+++||++|||+++|++||+++||+|+| +||+++|
T Consensus 80 ~G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ipl~~~v 159 (245)
T 1oys_A 80 KGKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFL 159 (245)
T ss_dssp -----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCSCE
T ss_pred CCCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcccCcccccCCCCce
Confidence 35688899999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEeeeCCeeE-EeCCccccccCCCcEEEEEcCCCCcEEEEEeee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 154 TSCSAGYLNSTPL-LDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLL 229 (241)
Q Consensus 154 ~~vs~~~~~~~~i-~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~ 229 (241)
+++|+|++++.++ +||+..||..+++.++|++ ++.|+++.+++.| .++++++.+++++|.++++++++.++++|.
T Consensus 160 ~avs~g~~~g~~vl~Dp~~~Ee~~~~~~~~v~~-~~~g~i~~iq~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 238 (245)
T 1oys_A 160 AAISVGIDKEQGILLDLNYEEDSSAEVDMNVIM-TGSGRFVELQGTGEEATFSREDLNGLLGLAEKGIQELIDKQKEVLG 238 (245)
T ss_dssp EEEEEEEETTTEEEESCCHHHHHHEEEEEEEEE-ETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEECCEEEEecCCHHHHhcCCCcEEEEE-cCCCcEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998888 9999999999999999987 5778999999865 699999999999999999999999999998
Q ss_pred HHHHH
Q 026213 230 ENTKQ 234 (241)
Q Consensus 230 ~~~~~ 234 (241)
++.++
T Consensus 239 ~~~~~ 243 (245)
T 1oys_A 239 DSLPE 243 (245)
T ss_dssp -----
T ss_pred hhhhh
Confidence 87553
No 12
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=2.1e-48 Score=329.42 Aligned_cols=220 Identities=27% Similarity=0.383 Sum_probs=202.1
Q ss_pred CCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC----
Q 026213 9 LRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR---- 84 (241)
Q Consensus 9 ~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~---- 84 (241)
+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|++|.+.+ +....+++|.+.++|.++|+++.++..
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~ 79 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVP-NWLKGKGQGWITAEYSMLPRATQQRTIRESV 79 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCC-GGGTTSSCCEEEEEEEECSCCTTSCCCCSST
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCC-CCCCCCCceEEEEEEEcCCCccccccccccC
Confidence 499999999999999999999999999999999999999999976442 233457899999999999999987632
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCC-----------CCCCCee
Q 026213 85 KPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIV 153 (241)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~g-----------ip~~~~~ 153 (241)
.|+++.++++++++|+++|+++++++.||+|+|+|+++||++||++++|++||+++||+|+| +||+++|
T Consensus 80 ~G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ipl~~~v 159 (255)
T 1udn_A 80 QGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFV 159 (255)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCCCE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcccCcccCCCccCce
Confidence 36788999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 154 TSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLLE 230 (241)
Q Consensus 154 ~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~ 230 (241)
++++++++++.+++||+.+||..++..++|++ +..++++.+++.| .++++++.++++.|.++++++++++++++.+
T Consensus 160 ~avsvg~~~g~~llDpt~~Ee~~~~~~l~va~-~~~g~i~~~q~~g~~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 160 AAVSVGIVNDRILLDLNFEEDSAAQVDMNVVG-TGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYVI 238 (255)
T ss_dssp EEEEEEEETTEEEESCCHHHHHTCSEEEEEEE-ETTSCEEEEEEEESSCCCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred eEEEEEEECCEEEECCCHHHHhhCCCCEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999987 5677999999864 6999999999999999999999999998765
No 13
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=2.4e-48 Score=326.32 Aligned_cols=218 Identities=32% Similarity=0.455 Sum_probs=198.7
Q ss_pred CCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCCC----
Q 026213 10 RLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRK---- 85 (241)
Q Consensus 10 R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~---- 85 (241)
|+|||.++|+|++.+++|++++++|||++++|+|+|+|+|++|.+.+ +....+++|.+.++|.+.|+++.++..+
T Consensus 3 R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~~ 81 (239)
T 1r6l_A 3 RPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVP-RFLKGQGQGWLTAEYGMLPRSTGERNQREASR 81 (239)
T ss_dssp CTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCS-SCCC---CCEEEEEEEECTTSSSSCCCCHHHH
T ss_pred CCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccC-CccCCCCcEEEEEEEEeCCCccccccccccCC
Confidence 99999999999999999999999999999999999999999976432 1223468899999999999999876332
Q ss_pred CCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCC-----------CCCCCeeE
Q 026213 86 PKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAG-----------IPMRDIVT 154 (241)
Q Consensus 86 ~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~g-----------ip~~~~~~ 154 (241)
|+++.++++++++|+++|+++++++.||+|+|+|+++||++||++++|++||+++||+|++ +||+++|+
T Consensus 82 G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ip~~~~~~ 161 (239)
T 1r6l_A 82 GKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVA 161 (239)
T ss_dssp TSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCBCCCEE
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcccCcccccCccCcee
Confidence 6788999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 155 SCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLL 229 (241)
Q Consensus 155 ~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~ 229 (241)
++|+|++++.+++|||.+||..+...++|++ ++.++++.+++.| .++++++.++++.|.+++++++++++++++
T Consensus 162 avs~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~~~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 238 (239)
T 1r6l_A 162 AVSVGIYQGVPVLDLDYLEDSAAETDLNVVM-TDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALA 238 (239)
T ss_dssp EEEEEEETTEEEESCCHHHHHHCSEEEEEEE-ETTSCEEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCEEEECCCHHHHhcCCceEEEEE-eCCCCEEEEEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987 5667999999864 699999999999999999999999999875
No 14
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=5.5e-48 Score=330.66 Aligned_cols=223 Identities=20% Similarity=0.275 Sum_probs=203.3
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEE-cCccccccccCCCCceEEEEEEeecCCcccccC
Q 026213 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (241)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~ 83 (241)
+++|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+ +|.+ |..+.++++.+.++|+++|++++.+.
T Consensus 22 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~---p~~~~~~~g~l~~~~~~~p~a~~~~~ 98 (277)
T 2po1_B 22 LKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGE---PFPDTPNMGVMTTNVELVPLASPTFE 98 (277)
T ss_dssp HHTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEEC---CCTTCTTSCEEEEEEEECGGGCTTCC
T ss_pred HhcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccC---CCCCCCCceEEEEEEEeCCCcccccc
Confidence 4689999999999999999999999999999999999999999999 5443 33456889999999999999987653
Q ss_pred CCCCCCchhHHHHHHHHHHHHH--hhccCCC---C---ccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCC---------
Q 026213 84 RKPKGDRRSTEISLVIRQTMEA--CILTHLM---P---RSQIDIFVQVLQADGGTRSACINAATLALQDAG--------- 146 (241)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~--~i~l~~~---p---~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~g--------- 146 (241)
.++++.++.+++++|+++|++ +++++.| | .|.|+|+++||++|||+++|+++|+++||+|+|
T Consensus 99 -~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~ 177 (277)
T 2po1_B 99 -PGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEE 177 (277)
T ss_dssp -SSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTT
T ss_pred -CCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCC
Confidence 457888999999999999998 5888866 5 389999999999999999999999999999999
Q ss_pred ------------CCCCCeeEEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEee--ecCCHHHHHHHHHH
Q 026213 147 ------------IPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD--AKLPTNTFEDVMQL 212 (241)
Q Consensus 147 ------------ip~~~~~~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~--g~~~~~~l~~~l~~ 212 (241)
+||+++|+++|+|++++.+++||+..||..+.+.++|++ +..|+++.+++. +.++.+++.++++.
T Consensus 178 ~~~~~~~~~~~~ipl~~~~~avs~g~~~~~~l~Dp~~~Ee~~~~~~~~v~~-~~~g~i~~lq~~g~~~~~~~~l~~~l~~ 256 (277)
T 2po1_B 178 TGEVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITT-DETGHISAVQKSEGGAFKLEEVMYAVET 256 (277)
T ss_dssp TCCEEEEEEEEECCBCCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTSCEEEEEEESSCCCCHHHHHHHHHH
T ss_pred CceeecccccccccccCceEEEEEEEECCEEEeCCCHHHHhhCCCcEEEEE-cCCCCEEEEEccCCCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999987 566899999987 57999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026213 213 AIEGCKAVANYIREVLLENT 232 (241)
Q Consensus 213 a~~~~~~i~~~i~~~l~~~~ 232 (241)
|.++++++++.++++|++..
T Consensus 257 A~~~~~~l~~~~~~~l~~~~ 276 (277)
T 2po1_B 257 AFKKAEEIRKLILEAVEKAK 276 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999998753
No 15
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=4.8e-48 Score=324.87 Aligned_cols=219 Identities=21% Similarity=0.375 Sum_probs=183.2
Q ss_pred CCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCCCC
Q 026213 7 EGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKP 86 (241)
Q Consensus 7 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~ 86 (241)
+|.|+|||.++|+|++++++|++++++|||+|++|+|+|+|+|++|.+.+ +..+.++++.+++++ +|. .+
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~-~~~~~~~~~~~~~~~--~P~-------~g 71 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGT-RKGENPEKASIEVVW--KPM-------TG 71 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECC-CTTSCSSSCEEEEEE--ECS-------SS
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCC-cccCCCccEEEEEEe--CCC-------CC
Confidence 68999999999999999999999999999999999999999999987543 444567777776654 452 13
Q ss_pred CCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEeee-CCee
Q 026213 87 KGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYL-NSTP 165 (241)
Q Consensus 87 ~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~-~~~~ 165 (241)
+++.++++++++|+++|+++++++.||+|.|+|+++||++||++++|++||+++||+++||||+++|+++++|++ ++.+
T Consensus 72 ~~~~~~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~~g~~ 151 (246)
T 3hkm_A 72 QIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEV 151 (246)
T ss_dssp CCCTTHHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECTTSCE
T ss_pred CCChhHHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEEECCEE
Confidence 466788999999999999999999999999999999999999999999999999999999999999999999998 8899
Q ss_pred EEeCCccccccCCCcEEEEEcCCCCcEEEEE------------------eeecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 166 LLDLNYVEDSAGGPDVTVGILPTLDKVTLLQ------------------MDAKLPTNTFEDVMQLAIEGCKAVANYIREV 227 (241)
Q Consensus 166 i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~------------------~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~ 227 (241)
++||+..||..++..++|+++.+ .++.++ ..|.++++++.++++.|.++++++.++++++
T Consensus 152 llDpt~~Ee~~~~~~~~va~~~~--~i~~lq~~g~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 229 (246)
T 3hkm_A 152 ILDTNKAEEQQLKSFAHLVFPNS--RKSASSKEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTT 229 (246)
T ss_dssp EESCCHHHHTTCSEEEEEEEEC----------------------CCCEEEEECEEHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCHHHHhcCCeeEEEEEeCC--ceEEEeecccccccccccceeeeeccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987533 244444 3578999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 026213 228 LLENTKQLEC 237 (241)
Q Consensus 228 l~~~~~~~~~ 237 (241)
|+++.++-..
T Consensus 230 l~~~~~~~~~ 239 (246)
T 3hkm_A 230 LQKQAPGDVL 239 (246)
T ss_dssp TC--------
T ss_pred HHhhhhchhh
Confidence 9998877543
No 16
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=1.8e-47 Score=324.44 Aligned_cols=218 Identities=21% Similarity=0.286 Sum_probs=197.5
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC
Q 026213 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (241)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~ 84 (241)
+++|+|+|||.++|+|++.+++|++++++|||++++|+|+|+|+|+++. ..|....++++.+.++|+++|+++++++
T Consensus 18 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~--~~p~~~~~~~g~l~v~~~~~p~a~~~~~- 94 (259)
T 3m7n_G 18 LRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQP--GEPYPDTPDRGVIIVNAELVPLASPTFE- 94 (259)
T ss_dssp HHTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEE--ECCCSSCTTSCEEEEEEECCTTSCTTCC-
T ss_pred HhcCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecc--cCCCCCCCCceEEEEEEEeCCccccccc-
Confidence 3589999999999999999999999999999999999999999999742 2233456788999999999999998764
Q ss_pred CCCCCchhHHHHHHHHHHHHH--hhccCCC---Cc---cEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCC---------
Q 026213 85 KPKGDRRSTEISLVIRQTMEA--CILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAGI--------- 147 (241)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~--~i~l~~~---p~---~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gi--------- 147 (241)
.|++++++.+++++|+++|++ +++++.| |+ |.|+|+++||++|||+++|+++|+++||.++++
T Consensus 95 ~g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~~~~~ 174 (259)
T 3m7n_G 95 PGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGE 174 (259)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSSS
T ss_pred CCCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEecCCc
Confidence 467889999999999999999 7888876 73 999999999999999999999999999999999
Q ss_pred ----CCCCeeEEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEee--ecCCHHHHHHHHHHHHHHHHHHH
Q 026213 148 ----PMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD--AKLPTNTFEDVMQLAIEGCKAVA 221 (241)
Q Consensus 148 ----p~~~~~~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~--g~~~~~~l~~~l~~a~~~~~~i~ 221 (241)
||+++|+++|+|++++.+++|||.+||..+++.++|+++ ..|+++.+++. +.++++++.++++.|.++++++.
T Consensus 175 ~~~lp~~~~~~avtvg~~~~~~l~Dpt~~Ee~~~~~~l~va~~-~~g~i~~i~~~g~~~~~~~~l~~~l~~a~~~~~~l~ 253 (259)
T 3m7n_G 175 DYLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTD-KDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLR 253 (259)
T ss_dssp CEECCBCCCCEEEEEEEETTEEEESCCTTGGGGCSCEEEEEEC-TTSCEEEEEEESSCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccCceeEEEEEEECCEEEECCCHHHHhhCCCcEEEEEe-CCCcEEEEECCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999874 56899999986 47999999999999999999999
Q ss_pred HHHHH
Q 026213 222 NYIRE 226 (241)
Q Consensus 222 ~~i~~ 226 (241)
++|++
T Consensus 254 ~~~~~ 258 (259)
T 3m7n_G 254 EKFKE 258 (259)
T ss_dssp HTTC-
T ss_pred HHHhh
Confidence 98765
No 17
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=1.7e-47 Score=327.63 Aligned_cols=222 Identities=18% Similarity=0.234 Sum_probs=201.6
Q ss_pred cCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccC
Q 026213 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRM 83 (241)
Q Consensus 4 ~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~ 83 (241)
++++|+|+|||.++|+|++.+++|++++++|||++++|+|+|+|+|+++ ...|....++++.+.++|+++|+++++++
T Consensus 24 ~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~--~~~p~~~~~~~g~l~v~~~~~p~a~~~~~ 101 (277)
T 2je6_A 24 LFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLE--IDKPYEDTPNQGNLIVNVELLPLAYETFE 101 (277)
T ss_dssp TGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEE--EECCCTTCTTCCEEEEEEEECTTSCTTCC
T ss_pred HHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEee--eeCCCCCCCCccEEEEEEEeCCccCcccc
Confidence 4568999999999999999999999999999999999999999999952 22333456889999999999999998754
Q ss_pred CCCCCCchhHHHHHHHHHHHHH--hhccCCC------CccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCC---------
Q 026213 84 RKPKGDRRSTEISLVIRQTMEA--CILTHLM------PRSQIDIFVQVLQADGGTRSACINAATLALQDAG--------- 146 (241)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~~l~~--~i~l~~~------p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~g--------- 146 (241)
.|++++++.+++++|+++|++ +++++.| ++|.|+|+++||++|||+++|+++|+++||++++
T Consensus 102 -~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~v~~~~~ 180 (277)
T 2je6_A 102 -PGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSN 180 (277)
T ss_dssp -CSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred -cCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 467888999999999999999 4788887 3699999999999999999999999999999999
Q ss_pred ------------CCCCCeeEEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEee--ecCCHHHHHHHHHH
Q 026213 147 ------------IPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD--AKLPTNTFEDVMQL 212 (241)
Q Consensus 147 ------------ip~~~~~~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~--g~~~~~~l~~~l~~ 212 (241)
+||+++|+++++|++++.+++|||.+||..+++.++|++ +..|+++++++. +.++.+++.++++.
T Consensus 181 ~~~~~~~~~~~~ip~~~~~~avsvg~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l~~ 259 (277)
T 2je6_A 181 GISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSY-TPDLKIVGIQKSGKGSMSLQDIDQAENT 259 (277)
T ss_dssp -CEEEEEEEEEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEE-CTTCCEEEEEEESSSCEEHHHHHHHHHH
T ss_pred cceEeccCccccccccCCeEEEEEEEECCEEecCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 456899999987 46899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026213 213 AIEGCKAVANYIREVLL 229 (241)
Q Consensus 213 a~~~~~~i~~~i~~~l~ 229 (241)
|.++++++++.++++++
T Consensus 260 A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 260 ARSTAVKLLEELKKHLG 276 (277)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998873
No 18
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3.6e-47 Score=324.72 Aligned_cols=221 Identities=19% Similarity=0.299 Sum_probs=200.6
Q ss_pred cCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEE-cCccccccccCCCCceEEEEEEeecCCccccc
Q 026213 4 VSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVY-GPREVQNKSQQMSDQALVRCEYSMANFSTGDR 82 (241)
Q Consensus 4 ~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 82 (241)
++++|+|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+ +|. .|....++++.+.++|.++|++++++
T Consensus 19 ~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~---~p~~~~~~~g~l~v~~~~~p~a~~~~ 95 (271)
T 2wnr_A 19 LINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIG---EPFPDTPEMGVILTNSELLPMASPTF 95 (271)
T ss_dssp HHHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEE---CCCTTCTTCCEEEEEEEECGGGCTTC
T ss_pred HHhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeee---cCCCCCCCceEEEEEEEeCCcccccc
Confidence 35689999999999999999999999999999999999999999999 443 23345688999999999999998875
Q ss_pred CCCCCCCchhHHHHHHHHHHHHH--hhccCCC---C---ccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCC--------
Q 026213 83 MRKPKGDRRSTEISLVIRQTMEA--CILTHLM---P---RSQIDIFVQVLQADGGTRSACINAATLALQDAG-------- 146 (241)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~~l~~--~i~l~~~---p---~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~g-------- 146 (241)
+ .|++++++.+++++|+++|++ +++++.| | .|.|+|+++||++|||+++|+++|+++||++++
T Consensus 96 ~-~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~~~ 174 (271)
T 2wnr_A 96 E-PGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVED 174 (271)
T ss_dssp C-CSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEET
T ss_pred c-CCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 3 467889999999999999999 5777876 4 499999999999999999999999999999999
Q ss_pred ------------CCCCCeeEEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEee--ecCCHHHHHHHHHH
Q 026213 147 ------------IPMRDIVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD--AKLPTNTFEDVMQL 212 (241)
Q Consensus 147 ------------ip~~~~~~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~--g~~~~~~l~~~l~~ 212 (241)
+||+++|+++|+|++++.+++|||.+||..+++.++|++ +..|+++++++. +.++.+++.++++.
T Consensus 175 ~~~~~~~~~~~~ip~~~~~~avt~g~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~~~i~~i~~~g~~~~~~~~l~~~l~~ 253 (271)
T 2wnr_A 175 GEVVINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGV-TEEGSICAMQKGGEGPLTRDDVLKAVSI 253 (271)
T ss_dssp TEEEEEEEEEEECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEE-ETTSCEEEEEEESSSCBCHHHHHHHHHH
T ss_pred CceeeccCcccccCccCCeEEEEEEEECCEEEeCCCHHHHhcCCCcEEEEE-eCCCCEEEEECCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 456899999987 47999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026213 213 AIEGCKAVANYIREVLL 229 (241)
Q Consensus 213 a~~~~~~i~~~i~~~l~ 229 (241)
|.++++++++.++++++
T Consensus 254 a~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 254 AVEKVPQLIEYLDKSMT 270 (271)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999998874
No 19
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=9.8e-48 Score=329.35 Aligned_cols=223 Identities=22% Similarity=0.249 Sum_probs=202.1
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC
Q 026213 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (241)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~ 84 (241)
+++|+|+|||+++|+|++.+++|++++++|||++++|+|+|+|+|+++.. .|....++++.+.++|+++|+++++++
T Consensus 20 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~--~p~~~~~~~g~l~v~~~~~p~a~~~~~- 96 (278)
T 2nn6_C 20 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFA--APSTDAPDKGYVVPNVDLPPLCSSRFR- 96 (278)
T ss_dssp HHTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEEC--CCCSSSTTCCCCEEEEECCSSSCTTSC-
T ss_pred HhcCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEee--cCCCCCCCccEEEEEEEeCCccCcccc-
Confidence 47899999999999999999999999999999999999999999999643 344445789999999999999998754
Q ss_pred CCCCCchhHHHHHHHHHHHHH--hhccCCC------CccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCC---------
Q 026213 85 KPKGDRRSTEISLVIRQTMEA--CILTHLM------PRSQIDIFVQVLQADGGTRSACINAATLALQDAGI--------- 147 (241)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~--~i~l~~~------p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gi--------- 147 (241)
.|+++.++.+++++|+++|++ +++++.| +.|.|+|+++||++|||+++|+++|+++||+++||
T Consensus 97 ~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~v~~~~~~ 176 (278)
T 2nn6_C 97 SGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEET 176 (278)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSSS
T ss_pred CCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 467888999999999999996 6766654 46999999999999999999999999999999996
Q ss_pred -------------CCCCeeEEEEEeeeCC-eeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee--cCCHHHHHHHHH
Q 026213 148 -------------PMRDIVTSCSAGYLNS-TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDVMQ 211 (241)
Q Consensus 148 -------------p~~~~~~~vs~~~~~~-~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g--~~~~~~l~~~l~ 211 (241)
||+++|+++++|++++ .+++|||.+||..+.+.++|++ +..|+++++++.| .++.+++.++++
T Consensus 177 ~~~~~~~~~~~~lp~~~~~~avs~g~~~~~~~l~Dpt~~Ee~~~~~~l~va~-~~~g~i~~v~~~g~~~~~~~~l~~~l~ 255 (278)
T 2nn6_C 177 ALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVM-DEEGKLCCLHKPGGSGLTGAKLQDCMS 255 (278)
T ss_dssp BCCCTTSCCCSCSCCSCCCEEEEEEECTTTCCEESCCTTTTTSCSEEEEEEE-CTTCCEEEEEESCCSCCCHHHHHHHHH
T ss_pred cceecCcccccccccCCceEEEEEEEECCceEEECCCHHHHhhcCceEEEEE-cCCCcEEEEEccCCCCCCHHHHHHHHH
Confidence 7999999999999998 9999999999999999999987 4667999999987 799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026213 212 LAIEGCKAVANYIREVLLEN 231 (241)
Q Consensus 212 ~a~~~~~~i~~~i~~~l~~~ 231 (241)
.|.++++++++.+++++++.
T Consensus 256 ~a~~~~~~i~~~~~~~l~~~ 275 (278)
T 2nn6_C 256 RAVTRHKEVKKLMDEVIKSM 275 (278)
T ss_dssp HHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988764
No 20
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.2e-46 Score=324.70 Aligned_cols=228 Identities=18% Similarity=0.198 Sum_probs=201.7
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC
Q 026213 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (241)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~ 84 (241)
+++|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+++. ..|....++++.+.++|++.|++++.++
T Consensus 32 l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~--~~p~~~~~~~g~l~~~v~~~p~a~~~~~- 108 (305)
T 2nn6_E 32 VQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEM--GTPKLEKPNEGYLEFFVDCSASATPEFE- 108 (305)
T ss_dssp HHTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCC--SCCCSSSCSSCCEEEECCCCTTTCSSCC-
T ss_pred HhcCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEe--eCCCcCCCCceEEEEEEEeCCCcCcccc-
Confidence 3679999999999999999999999999999999999999999999954 3344456888999999999999987653
Q ss_pred CCCCCchhHHHHHHHHHHHHH--hhccC---CCC---ccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCC-----
Q 026213 85 KPKGDRRSTEISLVIRQTMEA--CILTH---LMP---RSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRD----- 151 (241)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~--~i~l~---~~p---~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~----- 151 (241)
.+.++.++.+++++|+++|++ +++++ .+| .|.|+|+++||++|||+++|+++|+++||.++++|+.+
T Consensus 109 ~r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~iP~~~~~~~~ 188 (305)
T 2nn6_E 109 GRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDE 188 (305)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC-
T ss_pred CCCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 234557888999999999999 67777 567 38999999999999999999999999999999999643
Q ss_pred ----------------------eeEEEEEeeeCCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee--cCCHHHHH
Q 026213 152 ----------------------IVTSCSAGYLNSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFE 207 (241)
Q Consensus 152 ----------------------~~~~vs~~~~~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g--~~~~~~l~ 207 (241)
+|+++|+|++++.+|+|||.+||..+++.++|++ +..++|+++++.| .++.+++.
T Consensus 189 ~~~~~i~~~~d~~~~~~l~l~~~p~avt~g~i~~~~l~Dpt~~Ee~~~~~~l~Va~-~~~g~i~~i~~~g~~~l~~~~l~ 267 (305)
T 2nn6_E 189 EGSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSV-TSKGVVTCMRKVGKGSLDPESIF 267 (305)
T ss_dssp -----EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEECC-CSSSCCCEEEEEESSCBCHHHHH
T ss_pred CCceeeeccCcccccccccccCceEEEEEEEECCEEEECCCHHHHhhcCCcEEEEE-cCCCCEEEEEccCCCCCCHHHHH
Confidence 4789999999999999999999999999999986 4568899999876 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 208 DVMQLAIEGCKAVANYIREVLLENTKQLE 236 (241)
Q Consensus 208 ~~l~~a~~~~~~i~~~i~~~l~~~~~~~~ 236 (241)
++++.|.++++++.+.+++++.++.+.+.
T Consensus 268 ~~l~~A~~~~~~i~~~~~~~l~~~~~~~~ 296 (305)
T 2nn6_E 268 EMMETGKRVGKVLHASLQSVVHKEESLGP 296 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999998776443
No 21
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.9e-45 Score=321.76 Aligned_cols=226 Identities=16% Similarity=0.205 Sum_probs=202.2
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC
Q 026213 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (241)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~ 84 (241)
+++|+|+|||.++|+|++.+++| +++|||+|++|+|+|+|+|++|.+. |....++++.+.++|+++|+++++++.
T Consensus 35 L~~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~--p~~~~~~~g~l~~~v~~~p~a~~~~~~ 109 (358)
T 2nn6_A 35 IEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVS--PKLNRATEGILFFNLELSQMAAPAFEP 109 (358)
T ss_dssp HHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEEC--CCSTTTTSCCEEEEEEECTTTCSSCCS
T ss_pred HhcCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccC--CcccCCCCcEEEEEEEecCCccccccC
Confidence 46899999999999999999999 8999999999999999999997543 333457889999999999999887543
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhcc--CCC------CccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCC--------
Q 026213 85 KPKGDRRSTEISLVIRQTMEACILT--HLM------PRSQIDIFVQVLQADGGTRSACINAATLALQDAGIP-------- 148 (241)
Q Consensus 85 ~~~~~~~~~~l~~~l~~~l~~~i~l--~~~------p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip-------- 148 (241)
++++.++.+++++|+++|+++..+ +.+ ++|.|+|+++||++|||+++|+++|+++||.++++|
T Consensus 110 -g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~da~iP~v~~~~~~ 188 (358)
T 2nn6_A 110 -GRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDE 188 (358)
T ss_dssp -SSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTC
T ss_pred -CCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCcCcEEeeCCe
Confidence 567888999999999999996544 322 679999999999999999999999999999999999
Q ss_pred ---------------CCCeeEEEEEeee--CCeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee--cCCHHHHHHH
Q 026213 149 ---------------MRDIVTSCSAGYL--NSTPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA--KLPTNTFEDV 209 (241)
Q Consensus 149 ---------------~~~~~~~vs~~~~--~~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g--~~~~~~l~~~ 209 (241)
++++|+++|+|++ ++.+|+||+..||..+++.++|++ +..|+|+.+++.| .++.+++.++
T Consensus 189 v~i~~~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va~-t~~g~I~~lqk~G~~~ls~~~l~~~ 267 (358)
T 2nn6_A 189 VTLYTPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAM-NKHREICTIQSSGGIMLLKDQVLRC 267 (358)
T ss_dssp CBCCHHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEE-ETTTEEEEEEEESCCCCCHHHHHHH
T ss_pred eEecccccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEEE-cCCCeEEEEEeCCCCCCCHHHHHHH
Confidence 8999999999987 789999999999999999999985 6778999999765 4899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026213 210 MQLAIEGCKAVANYIREVLLENTKQLEC 237 (241)
Q Consensus 210 l~~a~~~~~~i~~~i~~~l~~~~~~~~~ 237 (241)
++.|.++++++.+.+++++.++.+++-+
T Consensus 268 l~~A~~~~~~i~~~~~~~l~~~~~~r~~ 295 (358)
T 2nn6_A 268 SKIAGVKVAEITELILKALENDQKVRKE 295 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhh
Confidence 9999999999999999999998887644
No 22
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-45 Score=315.92 Aligned_cols=226 Identities=17% Similarity=0.188 Sum_probs=184.2
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCC
Q 026213 5 SPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMR 84 (241)
Q Consensus 5 ~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~ 84 (241)
+++|+|+|||.++|+|++.+++| +++|||+|++|+|+|+|+|++|.. .|....++++.+.+++.+.|++....+
T Consensus 19 l~~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~--~p~~~~~~~g~~~~~ve~~~~~~~~~~- 92 (305)
T 2wp8_A 19 LRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIA--QPYEDRPFEGLFVISTEISPMAGSQFE- 92 (305)
T ss_dssp HTTTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC---CCSSCTTCCEEEEEECCC---------
T ss_pred HhhCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEecccc--CCcccCCCCcEEEEEEEECCCCCcccc-
Confidence 46899999999999999999999 899999999999999999999643 333446788999999999998876542
Q ss_pred CCCCC-chhHHHHHHHHHHHH--HhhccCCC---Cc---cEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCC-------
Q 026213 85 KPKGD-RRSTEISLVIRQTME--ACILTHLM---PR---SQIDIFVQVLQADGGTRSACINAATLALQDAGIP------- 148 (241)
Q Consensus 85 ~~~~~-~~~~~l~~~l~~~l~--~~i~l~~~---p~---~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip------- 148 (241)
.|+++ .++.+++++|+++|+ .+++++.+ |+ |.|+|+++||++|||+++|+++|+++||+++|+|
T Consensus 93 ~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~~a~iP~~~~~~~ 172 (305)
T 2wp8_A 93 NGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGE 172 (305)
T ss_dssp --------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTS
T ss_pred CCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHhCCCeEEecCC
Confidence 35666 888999999999999 56777755 53 9999999999999999999999999999999999
Q ss_pred ----------------CCCeeEEEEEeeeC--------------CeeEEeCCccccccCCCcEEEEEcCCCCcEEEEEee
Q 026213 149 ----------------MRDIVTSCSAGYLN--------------STPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMD 198 (241)
Q Consensus 149 ----------------~~~~~~~vs~~~~~--------------~~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~ 198 (241)
|++.|+++|+|+++ +.+++||+.+||..+++.++|++ +..|+++.+++.
T Consensus 173 ~~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~Va~-~~~g~i~~l~~~ 251 (305)
T 2wp8_A 173 QIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTL-NKNREVVQVSKA 251 (305)
T ss_dssp SCCBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEEE-CTTSEEEEEEEE
T ss_pred ceEecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEEEE-cCCCcEEEEEec
Confidence 67899999999997 78999999999999999999987 567899999987
Q ss_pred e--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026213 199 A--KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLEC 237 (241)
Q Consensus 199 g--~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~~ 237 (241)
| .++.+++.+++++|.+++++|++.++++|.++.+++.+
T Consensus 252 g~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r~~ 292 (305)
T 2wp8_A 252 GGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRNK 292 (305)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5 69999999999999999999999999999999888744
No 23
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=3e-45 Score=335.26 Aligned_cols=228 Identities=21% Similarity=0.313 Sum_probs=198.8
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEE-EcCccccccc--cCCCCceEEEEEEeecCCc
Q 026213 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKS--QQMSDQALVRCEYSMANFS 78 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V-~~p~e~~~~~--~~~~~~~~i~v~~~~~~~~ 78 (241)
++|+++|.|+|||.++|+|++.+++|+++++||||+|++|+|+|+|+| +||.+..++. ...++.+++.++|+++||+
T Consensus 307 ~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~s 386 (549)
T 3gme_A 307 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYS 386 (549)
T ss_dssp HHHHHTCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCC
Confidence 467889999999999999999999999999999999999999999999 6987654322 2234789999999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhc-cCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEE
Q 026213 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (241)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs 157 (241)
++++++.+.++.++.+++++++++|+++++ .+.||+ +|+|+++||++|||.++|++||+++||+|+||||++++++++
T Consensus 387 t~e~~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~-tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaavs 465 (549)
T 3gme_A 387 VGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY-TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 465 (549)
T ss_dssp TTCCCCSSCCCSSHHHHHHHHHHHHTTTCCCTTTCCC-EEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEE
T ss_pred cCCcccCCCCChhHHHHHHHHHHHHHHhcCccccCCe-EEEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCcccceeEEE
Confidence 999877778899999999999999999999 578997 599999999999999999999999999999999999999999
Q ss_pred EeeeCC----eeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeec---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 158 AGYLNS----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIREVLLE 230 (241)
Q Consensus 158 ~~~~~~----~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~---~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~ 230 (241)
+|++++ .+++||+..|+..++..+.|+. +.+.++.++++++ |+.+++.+++++|.+++.+|++.++++|.+
T Consensus 466 ~Gli~~g~~~~iL~D~~~~Ed~~~d~d~~Va~--t~~gitalqmd~ki~G~s~~~l~~~L~~A~~g~~~I~~~m~~al~~ 543 (549)
T 3gme_A 466 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVAG--SRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 543 (549)
T ss_dssp EEEEEETTEEEEEESCCHHHHHHSSEEEEEEE--CSSCEEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred EEEEcCCCceEEEecCChHHHccCCceEEEEe--cCCCeEEEEEccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999965 6889999999999998999874 4455888888754 699999999999999999999999999876
Q ss_pred HH
Q 026213 231 NT 232 (241)
Q Consensus 231 ~~ 232 (241)
..
T Consensus 544 pr 545 (549)
T 3gme_A 544 PR 545 (549)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 24
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=1.2e-43 Score=333.57 Aligned_cols=227 Identities=23% Similarity=0.348 Sum_probs=204.9
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEE-EcCcccccccc--CCCCceEEEEEEeecCCc
Q 026213 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQ--QMSDQALVRCEYSMANFS 78 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V-~~p~e~~~~~~--~~~~~~~i~v~~~~~~~~ 78 (241)
++|+++|.|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+| +||.+..++.+ ..++.+.+.++|+++||+
T Consensus 323 ~~il~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~s 402 (726)
T 4aid_A 323 RGILDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYS 402 (726)
T ss_dssp HHHHSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCc
Confidence 468889999999999999999999999999999999999999999999 79887654332 235789999999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhc-cCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEE
Q 026213 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (241)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs 157 (241)
++++++.+++++++.+++++++++|+++++ .+.||+ +|+|+++||++|||.++|++||+++||+|+||||++++++++
T Consensus 403 t~er~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~-tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm~~~Vaavs 481 (726)
T 4aid_A 403 VGETGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPY-TIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIA 481 (726)
T ss_dssp GTCCCCCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCC-EEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEE
T ss_pred ccccccCCCcchhhHHHHHHHHHHHHHhcCccccCCe-EEEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCccccCeeEEE
Confidence 999887788899999999999999999999 588998 599999999999999999999999999999999999999999
Q ss_pred EeeeCC----eeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 158 AGYLNS----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLLE 230 (241)
Q Consensus 158 ~~~~~~----~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~ 230 (241)
+|++++ .+++||+..|+..++..+.|+. +.+.++.++++| .|+.+++.+++++|.+++.+|++.|+++|.+
T Consensus 482 vGli~~g~~~~iLlD~~~~Ed~~gd~d~~Va~--t~~gIt~lQ~d~k~~~~s~e~l~~aL~~A~~g~~~I~~~m~~al~~ 559 (726)
T 4aid_A 482 MGLILEQDGFAVLSDILGDEDHLGDMDFKVAG--TSEGLTSLQMDIKIAGITPAIMEQALAQAKEGRAHILGEMNKAMDA 559 (726)
T ss_dssp EEEEECSSCEEEEESCCTTGGGGSSEEEEEEE--ETTEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred EEEEcCCCceEEEecCChhHHhcCCceEEEEe--cCCceEEEEecCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999953 4778999999998888888863 455699999987 4699999999999999999999999998875
Q ss_pred H
Q 026213 231 N 231 (241)
Q Consensus 231 ~ 231 (241)
+
T Consensus 560 ~ 560 (726)
T 4aid_A 560 P 560 (726)
T ss_dssp C
T ss_pred h
Confidence 4
No 25
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=3.3e-43 Score=327.62 Aligned_cols=226 Identities=23% Similarity=0.308 Sum_probs=202.2
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCcc-cccccc------CCCCceEEEEEEee
Q 026213 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPRE-VQNKSQ------QMSDQALVRCEYSM 74 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e-~~~~~~------~~~~~~~i~v~~~~ 74 (241)
++|+++|.|+|||.++|+|++++++|+++++||||+|++|+|+|+|+|++|.. ..++.+ ..++.+.+.++|++
T Consensus 311 ~~il~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~ 390 (630)
T 3u1k_A 311 SIVLNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEF 390 (630)
T ss_dssp HHHHHHSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHhcCCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEe
Confidence 46788999999999999999999999999999999999999999999998432 221111 13678899999999
Q ss_pred cCCcccccCCCCCCCchhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeE
Q 026213 75 ANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVT 154 (241)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~ 154 (241)
+||+++++++.|.+++++.+++++++++|+++++ +.||+ +|+|+++||++|||.++|++||+++||+|+||||+++++
T Consensus 391 ~P~st~e~~~~g~~~rREi~~~~Li~raLr~vi~-~~~p~-tI~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~Va 468 (630)
T 3u1k_A 391 PPYATNEIGKVTGLNRRELGHGALAEKALYPVIP-RDFPF-TIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVA 468 (630)
T ss_dssp CGGGGTCCCCCSSCCHHHHHHHHHHHHHHGGGSC-TTCSS-EEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCE
T ss_pred cCCcccccccCCCCChHHHHHHHHHHHHHHhhCc-ccCCe-EEEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCcccceE
Confidence 9999999877788899999999999999999997 56886 699999999999999999999999999999999999999
Q ss_pred EEEEeeeC------C-----eeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee---cCCHHHHHHHHHHHHHHHHHH
Q 026213 155 SCSAGYLN------S-----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAV 220 (241)
Q Consensus 155 ~vs~~~~~------~-----~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i 220 (241)
++++|+++ + .+++||+..|+..++..+.|+. +..| ++.++++| .|+.+++.+++++|.+++.+|
T Consensus 469 avs~gli~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~-t~~g-It~lQ~~~k~~~~s~~~l~~aL~~A~~g~~~I 546 (630)
T 3u1k_A 469 GVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAG-TNKG-ITALQADIKLPGIPIKIVMEAIQQASVAKKEI 546 (630)
T ss_dssp EEEEEEEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEEE-CSSC-EEEEEEEECSSCBCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCcccccccCceEEecCCHHHHhhCcceEEEEe-cCCc-eEEEEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999987 3 6999999999999888899874 4555 99999987 579999999999999999999
Q ss_pred HHHHHHHHHHH
Q 026213 221 ANYIREVLLEN 231 (241)
Q Consensus 221 ~~~i~~~l~~~ 231 (241)
++.+++++.+.
T Consensus 547 ~~~m~~al~~~ 557 (630)
T 3u1k_A 547 LQIMNKTISKP 557 (630)
T ss_dssp HHHHHHHCSSC
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 26
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=2.5e-43 Score=333.74 Aligned_cols=227 Identities=25% Similarity=0.386 Sum_probs=206.9
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEE-EcCcccccccc--CCCCceEEEEEEeecCCc
Q 026213 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNKSQ--QMSDQALVRCEYSMANFS 78 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V-~~p~e~~~~~~--~~~~~~~i~v~~~~~~~~ 78 (241)
++|+++|.|+|||.++|+|++.+++|+++++||||+|++|+|+|+|+| .||.+..++.+ ..++.+.+.++|+++|++
T Consensus 348 ~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~s 427 (757)
T 1e3p_A 348 ERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYS 427 (757)
T ss_dssp HHHHHTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGG
T ss_pred HHHhcCCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCcc
Confidence 467789999999999999999999999999999999999999999999 58876655433 246789999999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhc-cCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEE
Q 026213 79 TGDRMRKPKGDRRSTEISLVIRQTMEACIL-THLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (241)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~-l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs 157 (241)
++++++.+.+++++.+++++++++|+++++ .+.||+ +|+|+++||++|||.++|+++|+++||+|+||||++++++++
T Consensus 428 t~e~~~~g~~~~reie~~~li~raL~~vI~~~~~~P~-tI~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Vaavs 506 (757)
T 1e3p_A 428 VGETGRVGSPKRREIGHGALAERAIVPVLPTREEFPY-AIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIA 506 (757)
T ss_dssp GTCCCCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCE-EEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEE
T ss_pred cccccCCCCCchhHHHHHHHHHHHHHHhccccccCCE-EEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCcccceEEEE
Confidence 998877778899999999999999999998 588996 599999999999999999999999999999999999999999
Q ss_pred Eeee----CC----eeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeeec---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 158 AGYL----NS----TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDAK---LPTNTFEDVMQLAIEGCKAVANYIRE 226 (241)
Q Consensus 158 ~~~~----~~----~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~---~~~~~l~~~l~~a~~~~~~i~~~i~~ 226 (241)
+|++ ++ .+++||+..|+..++..++|+ ++.+.|+.++++|+ ++.+++.++++.|.+++.+|++.|++
T Consensus 507 ~gli~eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va--~t~~~It~lQ~~gk~~gi~~e~l~~aL~~A~~~~~~I~~~m~~ 584 (757)
T 1e3p_A 507 MGLISQEINGETHYVALTDILGAEDAFGDMDFKVA--GTKEFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMME 584 (757)
T ss_dssp EEEEEEESSSCEEEEEEESCCHHHHHHCSEEEEEE--ECSSSEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCccceeEEeCCCHHHHhccCceEEEE--ecCCeEEEEEEcCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 43 789999999999999999997 35578999999875 59999999999999999999999999
Q ss_pred HHHHH
Q 026213 227 VLLEN 231 (241)
Q Consensus 227 ~l~~~ 231 (241)
+|.++
T Consensus 585 al~~~ 589 (757)
T 1e3p_A 585 AIDTP 589 (757)
T ss_dssp HCSSC
T ss_pred Hhccc
Confidence 98765
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=7.4e-43 Score=329.51 Aligned_cols=229 Identities=20% Similarity=0.299 Sum_probs=194.4
Q ss_pred cccCCCCCCCCCCCCCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEE-EcCcccccc-c-cCCCCceEEEEEEeecCCc
Q 026213 2 EFVSPEGLRLDGRRPTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAV-YGPREVQNK-S-QQMSDQALVRCEYSMANFS 78 (241)
Q Consensus 2 ~~~~~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V-~~p~e~~~~-~-~~~~~~~~i~v~~~~~~~~ 78 (241)
++|++++.|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+| .+|.+..+. + ...++.+.+.++|+++|++
T Consensus 313 ~~i~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~s 392 (723)
T 3cdi_A 313 SRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYS 392 (723)
T ss_dssp HHHHTTCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGG
T ss_pred HHHhccCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCC
Confidence 467889999999999999999999999999999999999999999999 688764321 1 1235778999999999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhcc-CCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEE
Q 026213 79 TGDRMRKPKGDRRSTEISLVIRQTMEACILT-HLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCS 157 (241)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~i~l-~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs 157 (241)
++++++.+.+++++.+++++++++|++++++ +.||+ +|+|+++||++|||+++|+++|+++||+|+||||++++++++
T Consensus 393 t~e~~r~g~p~~REi~~~~li~raL~~vI~~~~~~p~-tI~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl~~~vaavs 471 (723)
T 3cdi_A 393 VGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPY-TVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIA 471 (723)
T ss_dssp GTCCCCC-----CTTHHHHHHHHHHHTTSCCSSSSCS-CEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEE
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHhcCcccCCCE-EEEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCcccceeeEE
Confidence 9988766777889999999999999999986 67885 699999999999999999999999999999999999999999
Q ss_pred EeeeC-C---eeEEeCCccccccCCCcEEEEEcCCCCcEEEEEeee---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 158 AGYLN-S---TPLLDLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA---KLPTNTFEDVMQLAIEGCKAVANYIREVLLE 230 (241)
Q Consensus 158 ~~~~~-~---~~i~DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~ 230 (241)
+|+++ | .+++||+..|+..++..++|+. +..| ++.++++| .++.+++.++++.|.+++.+|++.|+++|.+
T Consensus 472 ~gli~~g~~~~iL~Dp~~~Ed~~~d~d~~Va~-t~~g-I~~lq~~gk~~~is~e~l~~~l~~A~~~~~~I~~~m~~al~~ 549 (723)
T 3cdi_A 472 MGLVKEGDNYVVLSDILGDEDHLGDMDFKVAG-SRDG-ISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA 549 (723)
T ss_dssp EEEEEETTEEEEESSCCGGGGGGCSEEEEEEE-CSSC-EEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred EEEEcCCCceEEEECCChHHhhhccceeeecc-cCCc-eEEEEeCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99995 4 4899999999999999999975 4555 99999974 5899999999999999999999999999987
Q ss_pred HHH
Q 026213 231 NTK 233 (241)
Q Consensus 231 ~~~ 233 (241)
+.+
T Consensus 550 ~~~ 552 (723)
T 3cdi_A 550 PRG 552 (723)
T ss_dssp ---
T ss_pred cch
Confidence 754
No 28
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=9.4e-46 Score=306.96 Aligned_cols=209 Identities=22% Similarity=0.319 Sum_probs=167.9
Q ss_pred CCCCcceEEEeCCCCCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccccCCCCCCCchhHHH
Q 026213 16 PTEMRQLRAEIGNVAKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDRMRKPKGDRRSTEI 95 (241)
Q Consensus 16 ~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~l 95 (241)
.+|+|++++++|++++++|||+|++|+|+|+|+|++|.+.+ +..+.++++.++++|. |+++ +++++ ++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~-~~~~~~~~~~l~v~~~--p~~G-------~~~~~--e~ 69 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVH-ASKASDEAMTLDISYR--ANCG-------DNKFN--VL 69 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC--------------CCCSS--CCCC---------CCS--SC
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCc-ccccCCceEEEEEEEc--CCCC-------CCCHH--HH
Confidence 57999999999999999999999999999999999998664 3345577888776654 5542 23333 78
Q ss_pred HHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchHhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEeCCccccc
Q 026213 96 SLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTRSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNYVEDS 175 (241)
Q Consensus 96 ~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~DPt~~Ee~ 175 (241)
+++|++.|++++.++.||+|.|+|+++||++||++++|++||+++||.++||||+++++++++|+++|.+++|||..|+.
T Consensus 70 ~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~avsvg~~~g~~llDpt~~Ee~ 149 (222)
T 3krn_A 70 NNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRVKDELIIDPTAKQEA 149 (222)
T ss_dssp TTHHHHC--CCSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCCCCCEECSSSEESSCCTTTTT
T ss_pred HHHHHHHHHHhccHHhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEEEEEEEECCEEEeCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEE---cCCCCcEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 176 AGGPDVTVGI---LPTLDKVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLE 236 (241)
Q Consensus 176 ~~~~~~~v~~---~~~~~~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~ 236 (241)
.++..++|++ +++.++|++++++|.++.+++.++++.|.++++++.++++++++++.++..
T Consensus 150 ~~~~~l~va~~~~~~~~~~i~~vq~~g~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~~~~~~ 213 (222)
T 3krn_A 150 ASTGRVLFSVCKGSDGHPEVCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKLSVDE 213 (222)
T ss_dssp SCC-CCCCEECCCSSSSCCEEEECCBSSCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCccEEEEEEccCCCCCCEEEEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999998 766799999999999999999999999999999999999999999887754
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=263.43 Aligned_cols=209 Identities=18% Similarity=0.268 Sum_probs=182.5
Q ss_pred CCcceEEEeCCCCC-CceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccccc-----CCCCCCCch
Q 026213 18 EMRQLRAEIGNVAK-ADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRR 91 (241)
Q Consensus 18 e~R~i~i~~~~l~~-a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~~~ 91 (241)
.-|++++++|.+.+ |+|||++++|+|+|+|+|++|.+.+ + . +++.+.|+|+..+++.+.. ++.++|+.+
T Consensus 13 ~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~-~---~-df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~ 87 (630)
T 3u1k_A 13 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPS-P---S-QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDK 87 (630)
T ss_dssp SSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCC-S---S-SSCCEEEEEECSEETTTTEECTTC-----CCHH
T ss_pred CCEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCC-C---C-CeeEEEEEEEecccccCCCCccccccCCCCCHH
Confidence 35899999999986 9999999999999999999987543 1 1 6777999999888886421 122468889
Q ss_pred hHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCch--HhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEeC
Q 026213 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL 169 (241)
Q Consensus 92 ~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~--l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~DP 169 (241)
+.+++++|++.|++++.+..||.. +|+++||+.||+. ..+++||+++||.++||||++.++++++|+++|++|+||
T Consensus 88 e~lisRlIdR~lRp~~~~~~~~~~--qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i~g~~vldP 165 (630)
T 3u1k_A 88 EILTSRIIDRSIRPLFPAGYFYDT--QVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGIIDGEYVVNP 165 (630)
T ss_dssp HHHHHHHHHHHHGGGSCTTCCCCE--EEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHhHHhhhcccccCCCce--EEEEEEEECCCCCCHHHHHHHHHHHHHhccCCCcCCCeEEEEEEEECCEEEECC
Confidence 999999999999999998877764 5788899999997 789999999999999999999999999999999999999
Q ss_pred CccccccCCCcEEEEEcCCCCcEEEEEeeec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 170 NYVEDSAGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234 (241)
Q Consensus 170 t~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~-~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~ 234 (241)
|.+|++.+...++|+++ ..+++++++.+|. ++.+++.++++.|.+.++++++++++.+++..+.
T Consensus 166 t~~E~~~s~~dl~Va~t-~~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~~ 230 (630)
T 3u1k_A 166 TRKEMSSSTLNLVVAGA-PKSQIVMLEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKETGVT 230 (630)
T ss_dssp CHHHHHTEEEEEEEEEE-TTTEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHhhCCceEEEEEc-cCCcEEEEECCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999875 5678999999876 9999999999999999999999999999887643
No 30
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.97 E-value=1.5e-28 Score=225.04 Aligned_cols=207 Identities=19% Similarity=0.280 Sum_probs=173.1
Q ss_pred CcceEEEeCCCC-CCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccccc-----CCCCCCCchh
Q 026213 19 MRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRRS 92 (241)
Q Consensus 19 ~R~i~i~~~~l~-~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~~~~ 92 (241)
-|++++++|.+. +|+||+++++|+|+|+|+|+++.+.+ +..+...+.|+|....++.+.. ++-|+|+.++
T Consensus 13 ~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~----~g~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~~ 88 (549)
T 3gme_A 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK----PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGE 88 (549)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCC----TTCCSCCEEEEEEECGGGTTCCCSCC-----CCCHHH
T ss_pred CEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCC----CCCCCccceeeeeeehhhcccCCCcCcCcCCCCChhh
Confidence 589999999886 59999999999999999999976432 2235566999997433332221 1127889999
Q ss_pred HHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCchH--hHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEeCC
Q 026213 93 TEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGTR--SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLN 170 (241)
Q Consensus 93 ~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~l--~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~DPt 170 (241)
.+++++|+|.|+++++...+. .++|+++||+.||+.. .+++||+++||..++||+++.+.++++|+++|++|+|||
T Consensus 89 ~l~~RlIdR~lRplfp~~~~~--evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i~g~~vlnPt 166 (549)
T 3gme_A 89 TLIARLIDRPIRPLFPEGFVN--EVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPT 166 (549)
T ss_dssp HHHHHHHHHHHGGGSCTTCCS--CEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEETTEEEESCC
T ss_pred hHHHHHhCCccccccccCCcc--cEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCcCCCeeEEEEEEECCEEEECCC
Confidence 999999999999998776544 5788899999998553 588999999999999999999999999999999999999
Q ss_pred ccccccCCCcEEEEEcCCCCcEEEEEeee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 171 YVEDSAGGPDVTVGILPTLDKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233 (241)
Q Consensus 171 ~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g-~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~ 233 (241)
.+|++.++..++|+. +.+.+++++.+| .|+.+++.++++.|.+.++++++++++.+++..+
T Consensus 167 ~~e~~~s~~dl~va~--t~~~i~mve~e~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~~~ 228 (549)
T 3gme_A 167 QDELKESKLDLVVAG--TEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGK 228 (549)
T ss_dssp TTTTTTCSBCEEEEE--CSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCC
T ss_pred HHHHhhCceEEEEEe--cCCeEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999975 334599999886 6999999999999999999999999999988654
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.96 E-value=2.4e-28 Score=229.89 Aligned_cols=206 Identities=20% Similarity=0.230 Sum_probs=175.1
Q ss_pred CCcceEEEeCCCC-CCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEee-------cCCcccccCCCCCCC
Q 026213 18 EMRQLRAEIGNVA-KADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSM-------ANFSTGDRMRKPKGD 89 (241)
Q Consensus 18 e~R~i~i~~~~l~-~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~-------~~~~~~~~~~~~~~~ 89 (241)
.-|++++++|.+. +|+||+++++|+|+|+|+|+++.+.+ +..+..++.++|.. .|.....| -|+|+
T Consensus 26 ~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~----~g~df~pltveY~ek~~a~G~iPg~~~~R--EGrps 99 (726)
T 4aid_A 26 GGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQK----PGQDFFPLTVNYQEKTFAAGKIPGGFFKR--EGRPS 99 (726)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCC----TTCCSCCEEEEEEECGGGGTCCCCSTTCS--CCSCC
T ss_pred CCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCC----CCCCCcCceeeeeeehhhcccCCCcccCC--CCCCC
Confidence 3689999999876 59999999999999999999976432 22356679999973 34332222 27899
Q ss_pred chhHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCch--HhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEE
Q 026213 90 RRSTEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLL 167 (241)
Q Consensus 90 ~~~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~--l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~ 167 (241)
.++.+++++|.|.|+++++...+ +.++|+++||+.||+. -.+++||+++||.++++|+++.+.++++|+++|++|+
T Consensus 100 ~~~~li~RlIdR~lRplf~~~~~--~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i~g~~vl 177 (726)
T 4aid_A 100 EKETLVSRLIDRPIRPLFVKGFK--NEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWVDGAYVL 177 (726)
T ss_dssp HHHHHHHHHHHHHHGGGBCTTCC--SCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEETTEEEE
T ss_pred chhhhHHHHhCCccccccccCCc--cceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCcCCCeEEEEEEEECCEEEE
Confidence 99999999999999999886654 4688889999999864 3679999999999999999999999999999999999
Q ss_pred eCCccccccCCCcEEEEEcCCCCcEEEEEeee-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 168 DLNYVEDSAGGPDVTVGILPTLDKVTLLQMDA-KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233 (241)
Q Consensus 168 DPt~~Ee~~~~~~~~v~~~~~~~~i~~~~~~g-~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~ 233 (241)
|||.+|++.++..++|+. +.. .+++++.++ .|+.+++.+++++|.+.++++++++++.+++..+
T Consensus 178 dPt~~E~~~s~~dl~va~-t~~-~i~mve~~~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~g~ 242 (726)
T 4aid_A 178 NPTLDEMKESKMDLVVAG-TAD-AVMMVESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHAAK 242 (726)
T ss_dssp SCCHHHHHTCSEEEEEEE-CSS-CEEEEEEEESSBCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHhhCceeEEEEE-eCC-eEEEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999975 333 499999876 5999999999999999999999999999987654
No 32
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.96 E-value=4e-28 Score=229.22 Aligned_cols=206 Identities=19% Similarity=0.279 Sum_probs=175.1
Q ss_pred cceEEEeCCC-CCCceeEEEEeCCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCccccc-----CCCCCCCchhH
Q 026213 20 RQLRAEIGNV-AKADGSAVFEMGNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGDR-----MRKPKGDRRST 93 (241)
Q Consensus 20 R~i~i~~~~l-~~a~GSa~v~~G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~ 93 (241)
|++.+++|.+ .+|+||+++++|+|+|+|+|+++.+.+ +..+...+.|+|....++.+.. ++.|+|+.++.
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~----~~~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~ 95 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAK----PGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 95 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCC----SSCCSCCEEEEEEECGGGGTCCCC-------CCCHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCC----CCCCeeeEEEEEeEeccccccCCCccccCCCCCChHHh
Confidence 5999999988 589999999999999999999975332 1236677999998654444431 22378899999
Q ss_pred HHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCch-H-hHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEeCCc
Q 026213 94 EISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT-R-SACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDLNY 171 (241)
Q Consensus 94 ~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~-l-~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~DPt~ 171 (241)
+++++|+|.|++++.... +|.++|+++||+.||+. . .+++||+++||..+++|+.+.+.++++|+++|.+|+|||.
T Consensus 96 l~sRlIdR~lRplfp~~~--~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i~g~~v~nPt~ 173 (723)
T 3cdi_A 96 LIARLIDRPIRPLFPEGF--VNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQ 173 (723)
T ss_dssp HHHHHHHHHHGGGSCTTC--CSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEETTEEEESCCT
T ss_pred HHHHHhCccchhcccccC--cceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEECCEEEECcCH
Confidence 999999999999876543 57899999999999985 4 4999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEEcCCCCcEEEEEeeec-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 172 VEDSAGGPDVTVGILPTLDKVTLLQMDAK-LPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233 (241)
Q Consensus 172 ~Ee~~~~~~~~v~~~~~~~~i~~~~~~g~-~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~ 233 (241)
+|++.++..++|+. +.+.+++++.++. ++.+++.++++.|.+.++++.+++++.+++..+
T Consensus 174 ~e~~~s~~~lvvag--t~~~i~mve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~ 234 (723)
T 3cdi_A 174 DELKESKLDLVVAG--TEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGK 234 (723)
T ss_dssp TGGGGCSEEEEEEE--CSSCEEEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCceEEEEc--cCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999874 4456999998765 999999999999999999999999999987654
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.96 E-value=1.6e-27 Score=225.97 Aligned_cols=209 Identities=15% Similarity=0.158 Sum_probs=175.7
Q ss_pred CcceEEEeCCC-CCCceeEEEEe-CCeEEEEEEEcCccccccccCCCCceEEEEEEeecCCcccc-----cCCCCCCCch
Q 026213 19 MRQLRAEIGNV-AKADGSAVFEM-GNTKVIAAVYGPREVQNKSQQMSDQALVRCEYSMANFSTGD-----RMRKPKGDRR 91 (241)
Q Consensus 19 ~R~i~i~~~~l-~~a~GSa~v~~-G~T~Vi~~V~~p~e~~~~~~~~~~~~~i~v~~~~~~~~~~~-----~~~~~~~~~~ 91 (241)
-|++++++|.+ .+|+||+++++ |+|+|+|+|++|.+.+ +..++..+.|+|+...++.+. .++-|+|+.+
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~----~~~df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~ 111 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPK----DQLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSED 111 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEEC----TTCSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCC----CCCCCccEEEEEEecccccccCCCcccccCcCCChH
Confidence 48999999987 58999999999 9999999999976543 123567799999744333322 1223788899
Q ss_pred hHHHHHHHHHHHHHhhccCCCCccEEEEEEEEEeCCCch--HhHHHHHHHHHHHhCCCCCCCeeEEEEEeeeCCeeEEeC
Q 026213 92 STEISLVIRQTMEACILTHLMPRSQIDIFVQVLQADGGT--RSACINAATLALQDAGIPMRDIVTSCSAGYLNSTPLLDL 169 (241)
Q Consensus 92 ~~~l~~~l~~~l~~~i~l~~~p~~~i~i~v~il~~dG~~--l~a~i~a~~~AL~~~gip~~~~~~~vs~~~~~~~~i~DP 169 (241)
+++++++|.|.|+++++...+ ..++|+++||+.||.. ..+++||+++||.+++||+++.+.|+++|+++|++|+||
T Consensus 112 e~l~~RlIdR~LRplfp~~~~--~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~~~~vaav~vg~~~g~~vlnP 189 (757)
T 1e3p_A 112 AILTCRLIDRPLRPSFKKGLR--NEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFP 189 (757)
T ss_dssp HHHHHHHHHHHHGGGBCTTBC--EEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSBCCCCEEEEEEEETTEEEESC
T ss_pred HHHHHHHHCCcchhccccCCC--CceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCCCCceEEEEEEEECCEEEECC
Confidence 999999999999998765432 3699999999999864 899999999999999999999999999999999999999
Q ss_pred CccccccCCCcEEEEEcC---CCCcEEEEEe------------e-ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 170 NYVEDSAGGPDVTVGILP---TLDKVTLLQM------------D-AKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTK 233 (241)
Q Consensus 170 t~~Ee~~~~~~~~v~~~~---~~~~i~~~~~------------~-g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~ 233 (241)
|.+|++.+...++|+... +.+.+.+++. + +.++.+++.++++.|.+.++++++++++.+++..+
T Consensus 190 t~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~~~~~~~~~~~~se~~l~~al~~a~~~i~~l~~~q~~~~~~~~~ 269 (757)
T 1e3p_A 190 THTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLAAKAAK 269 (757)
T ss_dssp CHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHhcCceeEEEEeccccCCCCcEEEEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999988889987531 2677899988 2 46999999999999999999999999999886544
No 34
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=60.72 E-value=6.9 Score=23.36 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026213 200 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLEC 237 (241)
Q Consensus 200 ~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~~ 237 (241)
.++.+.+..+-.+|.+......++|+++|.++..+..+
T Consensus 15 rl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~~~ 52 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNHDK 52 (55)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHh
Confidence 46789999999999999999999999999998876543
No 35
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=49.28 E-value=9.2 Score=23.55 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 201 LPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235 (241)
Q Consensus 201 ~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 235 (241)
++++...++-..|......+.++|+++|.++..+.
T Consensus 20 Id~eLH~rlk~~Aa~~g~Sln~~i~eAL~~yl~~~ 54 (56)
T 2kel_A 20 MDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQKR 54 (56)
T ss_dssp EEHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999998764
No 36
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=36.46 E-value=99 Score=21.86 Aligned_cols=44 Identities=2% Similarity=0.079 Sum_probs=34.9
Q ss_pred cEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 191 KVTLLQMDAKLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234 (241)
Q Consensus 191 ~i~~~~~~g~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~ 234 (241)
-.+-++.+|..+.+.+.++++.-.+.|..+.+.+.+++++....
T Consensus 63 ~~lrIqT~~~~p~eaL~~al~~L~~~~~~l~~~f~~a~~~~~~~ 106 (115)
T 1xpp_A 63 PQIYVRVKSGKPQSAIKRAVRKLSKLYEDLGTQFQKEFQRYESD 106 (115)
T ss_dssp CEEEEEESSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 44566777655778999999999999999999999988877544
No 37
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=33.78 E-value=24 Score=20.78 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026213 200 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQLECRR 239 (241)
Q Consensus 200 ~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~~~~~ 239 (241)
.++.+...++-.+|.+....-..+|++++..+.++...+.
T Consensus 9 rl~~~l~~~l~~lA~~~~rs~s~lir~Ai~~yl~~~e~~~ 48 (52)
T 2gpe_A 9 KLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSD 48 (52)
T ss_dssp EEEHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCC
T ss_pred ECCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 3567788888888888888899999999999998776543
No 38
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=29.42 E-value=1.7e+02 Score=21.53 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=32.0
Q ss_pred ccccCCCcEEEEEcCCCCcEEEEEeeec-C---CHHHHHHHHHHHHHHHHH
Q 026213 173 EDSAGGPDVTVGILPTLDKVTLLQMDAK-L---PTNTFEDVMQLAIEGCKA 219 (241)
Q Consensus 173 Ee~~~~~~~~v~~~~~~~~i~~~~~~g~-~---~~~~l~~~l~~a~~~~~~ 219 (241)
|.....+.++|.+ +-++++..++.+-. + +.+.+++++-.|.+.+.+
T Consensus 70 eg~sGgGlVkVtv-nG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ 119 (143)
T 1ybx_A 70 EASAGGGAVTVVA-TGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALR 119 (143)
T ss_dssp EEEETTTTEEEEE-ETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCEEEEEE-ecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 4445677888876 56789999998632 3 457777777777666554
No 39
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=29.10 E-value=34 Score=19.18 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 200 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQ 234 (241)
Q Consensus 200 ~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~ 234 (241)
.++.+.+.++-.+|.+....-..+|++++..+..+
T Consensus 8 ~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~ 42 (45)
T 2cpg_A 8 TLSESVLENLEKMAREMGLSKSAMISVALENYKKG 42 (45)
T ss_dssp EEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 46788888888888888778888888888887654
No 40
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=27.12 E-value=41 Score=19.66 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 201 LPTNTFEDVMQLAIEGCKAVANYIREVLL 229 (241)
Q Consensus 201 ~~~~~l~~~l~~a~~~~~~i~~~i~~~l~ 229 (241)
+++++...+-..|......+.+++++++.
T Consensus 22 lt~eE~~~l~~~A~~~g~s~SeyiR~~~l 50 (51)
T 2ba3_A 22 FSPVEDETIRKKAEDSGLTVSAYIRNAAL 50 (51)
T ss_dssp ECHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 78999999999999999889999998763
No 41
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=24.22 E-value=75 Score=18.92 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 200 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235 (241)
Q Consensus 200 ~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 235 (241)
.++++....+-..|.+....+..+|...|.+..++.
T Consensus 13 Rlp~eL~~~l~~~A~~~grS~N~~i~~~L~~~l~~~ 48 (53)
T 1baz_A 13 RWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKE 48 (53)
T ss_dssp ECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 378899999999999999999999999999886543
No 42
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=21.59 E-value=88 Score=20.34 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026213 200 KLPTNTFEDVMQLAIEGCKAVANYIREVLLENTKQL 235 (241)
Q Consensus 200 ~~~~~~l~~~l~~a~~~~~~i~~~i~~~l~~~~~~~ 235 (241)
.++.+.+.++-.+|.+....-..+|++++.++..+.
T Consensus 15 ~Lpdel~~~Ld~la~~~g~srselireAi~~yl~~~ 50 (80)
T 2k5j_A 15 DLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQ 50 (80)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 478889989888998888888899999988887654
Done!