BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026215
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
G SS P + EY +++ K+++ +D LG QA GH G M+ +A PERV ++A
Sbjct: 93 GESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVA 152
Query: 62 LLNV 65
LN
Sbjct: 153 SLNT 156
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
G SS P + EY +++ K+++ +D LG QA GH G M+ +A PERV ++A
Sbjct: 78 GESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVA 137
Query: 62 LLNV 65
LN
Sbjct: 138 SLNT 141
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
G SS P + EY +++ K+++ +D LG QA GH G M+ +A PERV ++A
Sbjct: 297 GESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAVA 356
Query: 62 LLNV 65
LN
Sbjct: 357 SLNT 360
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 21/207 (10%)
Query: 13 YTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQC 72
+TT+ M D AL++ L A V G SMGA IA +L + PE V S L+ G
Sbjct: 91 FTTQTMVADTAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRG----- 145
Query: 73 CPKLDLQTLSIAIRFF-RAKTPEKRAAVDLDTHYS--QEYLEEYVGSSTRRAILYQEYVK 129
+LD A +FF +A+ + V L Y LE + + + +++
Sbjct: 146 --RLDR-----ARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLNDDVAVGDWIA 198
Query: 130 GISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVSVIHGRHDVIAQICYARRLA 189
S ++S G Q+ T + + R+ V VI DV+ R +A
Sbjct: 199 MFSMWPIKSTPGLRCQLDCA---PQTNR-LPAYRNIAAPVLVIGFADDVVTPPYLGREVA 254
Query: 190 EKLYPVARMIDLP-GGHLVSHERTEEV 215
+ L P R + +P GHL ER E V
Sbjct: 255 DAL-PNGRYLQIPDAGHLGFFERPEAV 280
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 4 SSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALL 63
+SVP Y+ ++MA+D + +M LG++Q +V GH GA +A +LA P RV LALL
Sbjct: 69 ASVP-HHINYSKRVMAQDQVEVMSKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALL 127
Query: 64 NV 65
++
Sbjct: 128 DI 129
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
G SS P + EY +++ K+++ +D LG QA GH ++ +A PERV ++A
Sbjct: 295 GDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERVRAVA 354
Query: 62 LLNV 65
LN
Sbjct: 355 SLNT 358
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 90/232 (38%), Gaps = 49/232 (21%)
Query: 2 GRSSVPVKKTE---YTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVL 58
G SS PV + Y+ + MA D LM LG+++ H+ GH+ G ++A P+ VL
Sbjct: 63 GGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHARGGRTGHRMALDHPDSVL 122
Query: 59 SLALLNVTGGGFQCCPKLDLQTLSIAIRFF----RAKTPEKRAAVDLDTHY--------- 105
SLA+L++ + ++D ++ A PEK D DT Y
Sbjct: 123 SLAVLDII-PTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFYEGCLFGWGA 181
Query: 106 ------SQEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDI 159
E LEEY +++ + G +Y G I H + +
Sbjct: 182 TGADGFDPEQLEEY----------RKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQV 231
Query: 160 QTIR-----SAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHL 206
Q SAG + S+ Q+ +A RLA R LPGGH
Sbjct: 232 QCPALVFSGSAGLMHSLFE------MQVVWAPRLANM-----RFASLPGGHF 272
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 89/232 (38%), Gaps = 49/232 (21%)
Query: 2 GRSSVPVKKTE---YTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVL 58
G SS PV + Y+ + MA D LM LG+++ H+ GH G ++A P+ VL
Sbjct: 63 GGSSKPVGAPDHANYSFRAMASDQRELMRTLGFERFHLVGHDRGGRTGHRMALDHPDSVL 122
Query: 59 SLALLNVTGGGFQCCPKLDLQTLSIAIRFF----RAKTPEKRAAVDLDTHY--------- 105
SLA+L++ + ++D ++ A PEK D DT Y
Sbjct: 123 SLAVLDII-PTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFYEGCLFGWGA 181
Query: 106 ------SQEYLEEYVGSSTRRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDI 159
E LEEY +++ + G +Y G I H + +
Sbjct: 182 TGADGFDPEQLEEY----------RKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQV 231
Query: 160 QTIR-----SAGFLVSVIHGRHDVIAQICYARRLAEKLYPVARMIDLPGGHL 206
Q SAG + S+ Q+ +A RLA R LPGGH
Sbjct: 232 QCPALVFSGSAGLMHSLFE------MQVVWAPRLANM-----RFASLPGGHF 272
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 22/209 (10%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
G SSVP YT + +DV+ L+D L ++AH G S+G ++ LA P+R+ L
Sbjct: 65 GASSVP--PGPYTLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLV 122
Query: 62 LLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYLEEYVGSSTRRA 121
L N T + D + ++ +A+ + AA L + LE R
Sbjct: 123 LAN-TSAWLGPAAQWDERIAAV----LQAEDXSETAAGFLGNWFPPALLE-------RAE 170
Query: 122 ILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVSVIHGRHDVIAQ 181
+ + + + AT + +G G A + + + R VI G +D +
Sbjct: 171 PVVERFRAXLXAT---NRHGLAGSFAAVRDTDLRAQLARIERP----TLVIAGAYDTVTA 223
Query: 182 ICYARRLAEKLYPVARMIDLPGGHLVSHE 210
+ +A + AR++ LP HL + E
Sbjct: 224 ASHGELIAASIAG-ARLVTLPAVHLSNVE 251
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 20 KDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCP 74
+ ++ LM+H G +++H+ G+SMG + +L PER +AL+ G P
Sbjct: 91 EQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARP 145
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 3 RSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLAL 62
+SS P +Y+ + +A + AL++ LG +A V GHS G +A + A + P +V L L
Sbjct: 86 KSSKPAH-YQYSFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVL 144
Query: 63 LNVTG 67
+N G
Sbjct: 145 VNPIG 149
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
GRSS + Y K + DV+ ++D G +QA V GH GA +A A + P+R +
Sbjct: 72 GRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 131
Query: 62 LLNVTGGG 69
++V G
Sbjct: 132 GISVPFAG 139
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
GRSS + Y K + DV+ ++D G +QA V GH GA +A A + P+R +
Sbjct: 66 GRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVV 125
Query: 62 LLNVTGGG 69
++V G
Sbjct: 126 GISVPFAG 133
>pdb|1Q0R|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (Rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin T (Dcmat)
pdb|1Q0Z|A Chain A, Crystal Structure Of Aclacinomycin Methylesterase (rdmc)
With Bound Product Analogue, 10-
Decarboxymethylaclacinomycin A (dcma)
Length = 298
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 82/216 (37%), Gaps = 37/216 (17%)
Query: 13 YTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQC 72
Y +A D +A++D G +AHV G SMGA I +A +R+ SL +L GGG
Sbjct: 75 YGFGELAADAVAVLDGWGVDRAHVVGLSMGATITQVIALDHHDRLSSLTML--LGGG--- 129
Query: 73 CPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYLEEYVGSSTRRAILYQEYVKGIS 132
LD+ + R R + +D Q +L+ + E K +S
Sbjct: 130 ---LDIDFDANIERVMRGEP-----TLDGLPGPQQPFLDALALMNQPAEGRAAEVAKRVS 181
Query: 133 ATGMQSNYG--FDGQIHACWMHKMTQ--------------------KDIQTIRSAGFLVS 170
+ S G FD +A W + +R
Sbjct: 182 KWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAELREVTVPTL 241
Query: 171 VIHGRHDVIAQICYARRLAEKLYPVARMIDLPG-GH 205
VI HD IA + + LA L P AR+ ++PG GH
Sbjct: 242 VIQAEHDPIAPAPHGKHLA-GLIPTARLAEIPGMGH 276
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 2 GRSSVPV---KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVL 58
G S +P + T YT + MAK +I M+ LG + GH+ GA ++ +LA P R+
Sbjct: 71 GWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLS 130
Query: 59 SLALLNV 65
LA+L++
Sbjct: 131 KLAVLDI 137
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 2 GRSSVPV---KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVL 58
G S +P + T YT + MAK +I M+ LG + GH GA ++ +LA P R+
Sbjct: 71 GWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLS 130
Query: 59 SLALLNV 65
LA+L++
Sbjct: 131 KLAVLDI 137
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 2 GRSSVPV---KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVL 58
G S +P + T YT + MAK +I M+ LG + GH GA ++ +LA P R+
Sbjct: 71 GWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLS 130
Query: 59 SLALLNV 65
LA+L++
Sbjct: 131 KLAVLDI 137
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 2 GRSSVPV---KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVL 58
G S +P + T YT + MAK +I M+ LG + GH GA ++ +LA P R+
Sbjct: 71 GWSDMPESDEQHTPYTKRAMAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLS 130
Query: 59 SLALLNV 65
LA+L++
Sbjct: 131 KLAVLDI 137
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 16/182 (8%)
Query: 9 KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGG 68
+ Y+ +I +MD L ++AH+ G+S G +A A ERV + L+ G
Sbjct: 72 ENYNYSKDSWVDHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGT 131
Query: 69 GFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYLEEYVGSSTRRAILYQEYV 128
F L+ A+ + R +D+ + +E + Y
Sbjct: 132 RFDVTEGLN------AVWGYTPSIENMRNLLDIFAYDRSLVTDE---------LARLRYE 176
Query: 129 KGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVSVIHGRHDVIAQICYARRL 188
I +S + W+ + D + I++ +IHGR D + + + RL
Sbjct: 177 ASIQPGFQESFSSMFPEPRQRWIDALASSD-EDIKTLPNETLIIHGREDQVVPLSSSLRL 235
Query: 189 AE 190
E
Sbjct: 236 GE 237
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 16/182 (8%)
Query: 9 KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGG 68
+ Y+ +I +MD L ++AH+ G++ G +A A ERV + L+ G
Sbjct: 72 ENYNYSKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGT 131
Query: 69 GFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYLEEYVGSSTRRAILYQEYV 128
F L+ A+ + R +D+ + +E + Y
Sbjct: 132 RFDVTEGLN------AVWGYTPSIENMRNLLDIFAYDRSLVTDE---------LARLRYE 176
Query: 129 KGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVSVIHGRHDVIAQICYARRL 188
I +S + W+ + D + I++ +IHGR D + + + RL
Sbjct: 177 ASIQPGFQESFSSMFPEPRQRWIDALASSD-EDIKTLPNETLIIHGREDQVVPLSSSLRL 235
Query: 189 AE 190
E
Sbjct: 236 GE 237
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 13 YTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQC 72
+T ++ + A+ LG ++ HV G S G M+ ++A P ++SLA+ C
Sbjct: 107 WTPQLFVDEFHAVCTALGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAI---------C 157
Query: 73 CPKLDLQTLSIAIRFFRAKTP-EKRAAVD 100
++ S A RA+ P E RAA+D
Sbjct: 158 NSPASMRLWSEAAGDLRAQLPAETRAALD 186
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 17 IMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCPKL 76
+ A+ V LMD L +AH+ G+SMG A A P+R+ L L+ G G +
Sbjct: 89 VNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPM 148
Query: 77 DLQTLSIAIRFF 88
++ + + + +
Sbjct: 149 PMEGIKLLFKLY 160
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 17 IMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCPKL 76
+ A+ V LMD L +AH+ G+SMG A A P+R+ L L+ G G +
Sbjct: 89 VNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPM 148
Query: 77 DLQTLSIAIRFF 88
++ + + + +
Sbjct: 149 PMEGIKLLFKLY 160
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 18 MAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCPKLD 77
MA+D++ +D L +A GHSMG L A+ P+R+ L +++ + +
Sbjct: 67 MAQDLVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDE 126
Query: 78 LQTLSIAIRFFRAKTPEKRAAVDLDTHYSQE-----YLEEYVGSSTR--RAILYQEY 127
+ A+ A+T ++ AA+ + H ++E L+ +V R +L+ +Y
Sbjct: 127 IFAAINAVSESDAQTRQQAAAI-MRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQY 182
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 9 KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGG 68
+ Y+ ++ ++ + ++ L V G S+G + A +LAAM P+ V L L++VT
Sbjct: 123 EDGNYSPQLNSETLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPS 182
Query: 69 GFQCCPKLDL-QTLSIAIRFFRAKTPEKRAAVDL 101
Q +L Q ++A+ + P +A +DL
Sbjct: 183 ALQRHAELTAEQRGTVALMHGEREFPSFQAMLDL 216
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
GRS+ + TT + D+ L HLG + VFG S G+ +A A P++V L
Sbjct: 72 GRSTPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALAYAQTHPQQVTELV 131
Query: 62 LLNV 65
L +
Sbjct: 132 LRGI 135
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 17 IMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCPKL 76
+ A+ V LMD L +AH+ G++MG A A P+R+ L L+ G G +
Sbjct: 86 VNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPM 145
Query: 77 DLQTLSIAIRFFRAKTPE 94
++ + + + + + E
Sbjct: 146 PMEGIKLLFKLYAEPSYE 163
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 17 IMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCPKL 76
+ A+ V LMD L +AH+ G++MG A A P+R+ L L+ G G +
Sbjct: 89 VNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPM 148
Query: 77 DLQTLSIAIRFFRAKTPE 94
++ + + + + + E
Sbjct: 149 PMEGIKLLFKLYAEPSYE 166
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 17 IMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCPKL 76
+ A+ V LMD L +AH+ G++MG A A P+R+ L L+ G G +
Sbjct: 89 VNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPM 148
Query: 77 DLQTLSIAIRFF 88
++ + + + +
Sbjct: 149 PMEGIKLLFKLY 160
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 17 IMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCPKL 76
+ A+ V LMD L +AH+ G++MG A A P+R+ L L+ G G +
Sbjct: 89 VNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPM 148
Query: 77 DLQTLSIAIRFF 88
++ + + + +
Sbjct: 149 PMEGIKLLFKLY 160
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 33/217 (15%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
G S P K YT + + DV+ L D L +A+ G S G + LAA +R+ +A
Sbjct: 64 GHSEAP--KGPYTIEQLTGDVLGLXDTLKIARANFCGLSXGGLTGVALAARHADRIERVA 121
Query: 62 LLNVTGGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVD--LDTHYSQEYLE-EYVGSST 118
L N ++ + + R +A+T A D L ++ +Y E E V +
Sbjct: 122 LCNTAA-------RIGSPEVWVP-RAVKARTEGXHALADAVLPRWFTADYXEREPVVLAX 173
Query: 119 RRAILYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVS--VIHGRH 176
R + D + +A + D++ + G V VI G H
Sbjct: 174 IRDVFVHT----------------DKEGYASNCEAIDAADLRP-EAPGIKVPALVISGTH 216
Query: 177 DVIAQICYARRLAEKLYPVARMIDLPGGHLVSHERTE 213
D+ A R LA+ + AR ++L H+ + ER +
Sbjct: 217 DLAATPAQGRELAQAIAG-ARYVELDASHISNIERAD 252
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 11 TEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGF 70
++Y+ A D AL+D LG ++A+V GH A++ K +RV+ A+ + F
Sbjct: 78 SKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDF 137
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 18 MAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCPKLD 77
MA+D++ +D +A GHSMG L A+ P+R+ L +++ + +
Sbjct: 67 MAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDE 126
Query: 78 LQTLSIAIRFFRAKTPEKRAAVDLDTHYSQE-----YLEEYVGSSTR--RAILYQEY 127
+ A+ A+T ++ AA+ + H ++E L+ +V R +L+ +Y
Sbjct: 127 IFAAINAVSESDAQTRQQAAAI-MRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQY 182
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 9 KKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVT 66
+ +Y+ +A+D + M LG+++ V GH GA + +LA P+ V + L V
Sbjct: 77 EGADYSKAALARDQLETMGQLGFERFAVIGHDRGARVGYRLALDHPQAVAAFVSLTVV 134
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAM-IACKLAAMVPERVLS 59
GRS P +Y T A D+ L++HL K+ + G SMG +A +A RV
Sbjct: 57 FGRSDQPWTGNDYDT--FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAG 114
Query: 60 LALLN 64
L LL
Sbjct: 115 LVLLG 119
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 33.5 bits (75), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAM-IACKLAAMVPERVLS 59
GRS P +Y T A D+ L++HL K+ + G SMG +A +A RV
Sbjct: 57 FGRSDQPWTGNDYDT--FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAG 114
Query: 60 LALLN 64
L LL
Sbjct: 115 LVLLG 119
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAM-IACKLAAMVPERVLS 59
GRS P +Y T A D+ L++HL K+ + G SMG +A +A RV
Sbjct: 57 FGRSDQPWTGNDYDT--FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAG 114
Query: 60 LALLN 64
L LL
Sbjct: 115 LVLLG 119
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAM-IACKLAAMVPERVLS 59
GRS P +Y T A D+ L++HL K+ + G SMG +A +A RV
Sbjct: 57 FGRSDQPWTGNDYDT--FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAG 114
Query: 60 LALLN 64
L LL
Sbjct: 115 LVLLG 119
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAM-IACKLAAMVPERVLS 59
GRS P +Y T A D+ L++HL K+ + G SMG +A +A RV
Sbjct: 57 FGRSDQPWTGNDYDT--FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAG 114
Query: 60 LALLN 64
L LL
Sbjct: 115 LVLLG 119
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
GRSS T Y++ + ++ L + + GHSMGAM+A +A++ P+++ L
Sbjct: 65 GRSSHLEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIASVRPKKIKELI 124
Query: 62 LLNV 65
L+ +
Sbjct: 125 LVEL 128
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 2 GRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLA 61
GRS TT + D+ L + G +Q VFG S G+ +A A PERV +
Sbjct: 75 GRSRPHASLDNNTTWHLVADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEMV 134
Query: 62 LLNV 65
L +
Sbjct: 135 LRGI 138
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 10 KTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVT 66
+T Y A D+ L+ L A + GHS+GA + AA P+ V S+ ++ T
Sbjct: 112 ETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFT 168
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Query: 15 TKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCP 74
+ + A+ + +++D L + H+ G+SMG + PERV L L+ GG
Sbjct: 90 SDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFT 149
Query: 75 KLDLQTLSIAIRFFRAKTPEK-RAAVDL---DT-HYSQEYLEEYVGSSTRRAILYQEYVK 129
+ + + + +R T E + +D+ DT + E + + R + +VK
Sbjct: 150 PMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVK 209
Query: 130 GISATGMQ 137
+ A Q
Sbjct: 210 SLEANPKQ 217
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 69/183 (37%), Gaps = 21/183 (11%)
Query: 19 AKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALLNVTGGGFQCCPKLDL 78
A DV A++ HLG + A GHS G + A PE ++ A+L P L +
Sbjct: 76 ADDVAAVVAHLGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVL------IAAVPPLMV 129
Query: 79 QTLS-------IAIRFFRAKTPEKRAAVDLDTHYSQEYLEEYVGSSTRRAILYQEYVKGI 131
QT F+A+ RA D Y G I+ + +G+
Sbjct: 130 QTPGNPGGLPKSVFDGFQAQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGM 189
Query: 132 SATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVSVIHGRHDVIAQICYARRLAEK 191
+ +DG + + +D++ I+ V V+HG D I + L+ K
Sbjct: 190 IGSAKAH---YDGIV--AFSQTDFTEDLKGIQQP---VLVMHGDDDQIVPYENSGVLSAK 241
Query: 192 LYP 194
L P
Sbjct: 242 LLP 244
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 19 AKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSLALL 63
A ++ + D+LG +++H G S+G + PERV S A+L
Sbjct: 121 ANWLLDVFDNLGIEKSHXIGLSLGGLHTXNFLLRXPERVKSAAIL 165
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 69/183 (37%), Gaps = 34/183 (18%)
Query: 13 YTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPE-RVLSLA-----LLNVT 66
Y+ + A + +M LG A VFG S+G I ++ A PE R L +
Sbjct: 75 YSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREEV 134
Query: 67 GGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYLEEYVGSSTR-RAILYQ 125
G GF+ P + L I F + E A + L+ + R R I+++
Sbjct: 135 GQGFKSGPDMALAGQEI----FSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFE 190
Query: 126 EYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVSVIHGRHDVIAQICYA 185
++ G Q+DI + A ++V++GR + ++ +
Sbjct: 191 KFGSGTGG---------------------NQRDI--VAEAQLPIAVVNGRDEPFVELDFV 227
Query: 186 RRL 188
++
Sbjct: 228 SKV 230
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 11 TEYTTKIMAKDVIALMDHLGWKQAHVF--GHSMGAMIACKLAAMVPERVLSLALLNV 65
++++ + DV+AL++ + + VF H GA+IA L P++V +L L+V
Sbjct: 81 SKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSV 137
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 11 TEYTTKIMAKDVIALMDHLGWKQAHVF--GHSMGAMIACKLAAMVPERVLSLALLNV 65
++++ + DV+AL++ + + VF H GA+IA L P++V +L L+V
Sbjct: 81 SKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSV 137
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSL 60
G+S PV + +YT + ++AL++ L + + G + L P R L
Sbjct: 85 FGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRL 144
Query: 61 ALLN 64
++N
Sbjct: 145 IIMN 148
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSL 60
G+S PV + +YT + ++AL++ L + + G + L P R L
Sbjct: 85 FGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRL 144
Query: 61 ALLNV 65
++N
Sbjct: 145 IIMNA 149
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSL 60
G+S PV + +YT + ++AL++ L + + G + L P R L
Sbjct: 85 FGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRL 144
Query: 61 ALLN 64
++N
Sbjct: 145 IIMN 148
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSL 60
G+S PV + +YT + ++AL++ L + + G + L P R L
Sbjct: 85 FGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRL 144
Query: 61 ALLN 64
++N
Sbjct: 145 IIMN 148
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSL 60
G+S PV + +YT + ++AL++ L + + G + L P R L
Sbjct: 85 FGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRL 144
Query: 61 ALLNV 65
++N
Sbjct: 145 IIMNA 149
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 1 MGRSSVPVKKTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPERVLSL 60
G+S PV + +YT + ++AL++ L + + G + L P R L
Sbjct: 85 FGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQXWGGFLGLTLPMADPSRFKRL 144
Query: 61 ALLN 64
++N
Sbjct: 145 IIMN 148
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 34/183 (18%)
Query: 13 YTTKIMAKDVIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPE-RVLSLA-----LLNVT 66
Y+ + A + +M LG A VFG S+G I ++ A PE R L +
Sbjct: 75 YSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREEV 134
Query: 67 GGGFQCCPKLDLQTLSIAIRFFRAKTPEKRAAVDLDTHYSQEYLEEYVGSSTR-RAILYQ 125
G GF+ P + L I F + E A + L+ + R R I+++
Sbjct: 135 GQGFKSGPDMALAGQEI----FSERDVESYARSTCGEPFEASLLDIVARTDGRARRIMFE 190
Query: 126 EYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVSVIHGRHDVIAQICYA 185
++ G Q+DI + A ++V++GR ++ +
Sbjct: 191 KFGSGTGG---------------------NQRDI--VAEAQLPIAVVNGRDGPFVELDFV 227
Query: 186 RRL 188
++
Sbjct: 228 SKV 230
>pdb|3BIK|B Chain B, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIK|C Chain C, Crystal Structure Of The Pd-1PD-L1 Complex
Length = 134
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 160 QTIRSAGFLVSVIHGRHDVIAQICYARRL--------AEKLYPVARMIDLPGGHLVSHER 211
Q ++ A F + + RHD I RR A L+P A++ + PG LV ER
Sbjct: 65 QPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTER 124
Query: 212 TEEV 215
E
Sbjct: 125 ILET 128
>pdb|1NPU|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
Pd-1
pdb|3BP5|A Chain A, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
Length = 117
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 160 QTIRSAGFLVSVIHGRHDVIAQICYARRL--------AEKLYPVARMIDLPGGHLVSHER 211
Q ++ A F + + RHD I RR A L+P A++ + PG LV ER
Sbjct: 55 QPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTER 114
Query: 212 TEE 214
E
Sbjct: 115 ILE 117
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 75/201 (37%), Gaps = 19/201 (9%)
Query: 10 KTEYTTKIMAKDVIALMDHLGWKQAHVFGHSMG-AMIACKLAAMVPERVLSLALLNVTGG 68
T Y A D+ +++ L + + G SMG +A +A ERV LA L
Sbjct: 68 NTGYDYDTFAADLHTVLETLDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLA---- 123
Query: 69 GFQCCPKL---DLQTLSIAIRFF---RAKTPEKRAAVDLDTHYSQEYLEEYVGSSTRRAI 122
P L D + F A R A D + + L+E +GS
Sbjct: 124 --SLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDENLGSRISEQA 181
Query: 123 LYQEYVKGISATGMQSNYGFDGQIHACWMHKMTQKDIQTIRSAGFLVSVIHGRHDVIAQI 182
+ + I + + + + W+ + D++ +R+AG ++HG D I I
Sbjct: 182 VTGSWNVAIGSAPVAAY-----AVVPAWIEDF-RSDVEAVRAAGKPTLILHGTKDNILPI 235
Query: 183 CYARRLAEKLYPVARMIDLPG 203
R + P A +++ G
Sbjct: 236 DATARRFHQAVPEADYVEVEG 256
>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide
pdb|1WAK|A Chain A, X-Ray Structure Of Srpk1
Length = 397
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 147 HACWMHKMTQKDIQTIRSAGFLVSVIHGRH---DVIAQICYARRLAEKLY 193
+ACW+HK +DIQT + V + G + D+ + C A LA Y
Sbjct: 242 NACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDY 291
>pdb|3FLB|A Chain A, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
Biosynthetic Pathway - Form 2
Length = 267
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 22 VIALMDHLGWKQAHVFGHSMGAMIACKLAAMVPE 55
++ ++ G + +FGH+MGA+I +LA +PE
Sbjct: 76 LLEVLRPFGDRPLALFGHAMGAIIGYELALRMPE 109
>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its
Substrate AsfSF2
Length = 381
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 147 HACWMHKMTQKDIQTIRSAGFLVSVIHGRH---DVIAQICYARRLAEKLY 193
+ACW+HK +DIQT + V + G + D+ + C A LA Y
Sbjct: 226 NACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDY 275
>pdb|1KI0|A Chain A, The X-Ray Structure Of Human Angiostatin
Length = 253
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 208 SHERTEEVFPLPNRSDKYASSPIG 231
+HERT E FP N + Y +P G
Sbjct: 207 THERTPENFPCKNLDENYCRNPDG 230
>pdb|2DOH|X Chain X, The X-Ray Crystallographic Structure Of The Angiogenesis
Inhibitor, Angiostatin, Bound A To A Peptide From The
Group A Streptococcal Surface Protein Pam
pdb|2DOI|X Chain X, The X-Ray Crystallographic Structure Of The Angiogenesis
Inhibitor, Angiostatin, Bound To A Peptide From The
Group A Streptococcus Protein Pam
pdb|2DOI|A Chain A, The X-Ray Crystallographic Structure Of The Angiogenesis
Inhibitor, Angiostatin, Bound To A Peptide From The
Group A Streptococcus Protein Pam
Length = 234
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 208 SHERTEEVFPLPNRSDKYASSPIG 231
+HERT E FP N + Y +P G
Sbjct: 207 THERTPENFPCKNLDENYCRNPDG 230
>pdb|1ZL3|A Chain A, Coupling Of Active Site Motions And Rna Binding
Length = 327
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 180 AQICYARRLAEKLYPVARMIDL 201
A + Y RRLA YPV RM+ L
Sbjct: 208 AHVIYLRRLAVSKYPVERMVTL 229
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase
Trub Bound To A T Stem-Loop Rna
Length = 327
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 180 AQICYARRLAEKLYPVARMIDL 201
A + Y RRLA YPV RM+ L
Sbjct: 208 AHVIYLRRLAVSKYPVERMVTL 229
>pdb|1R3F|A Chain A, Crystal Structure Of Trna Pseudouridine Synthase Trub And
Its Rna Complex: Rna-Protein Recognition Through A
Combination Of Rigid Docking And Induced Fit
Length = 314
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 180 AQICYARRLAEKLYPVARMIDL 201
A + Y RRLA YPV RM+ L
Sbjct: 195 AHVIYLRRLAVSKYPVERMVTL 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,849,444
Number of Sequences: 62578
Number of extensions: 265360
Number of successful extensions: 788
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 77
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)