Query 026216
Match_columns 241
No_of_seqs 155 out of 665
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:20:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 2.3E-35 7.8E-40 223.0 6.5 74 155-228 2-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.8E-35 6.1E-40 224.7 5.4 74 154-227 4-77 (78)
3 2rpr_A Flywch-type zinc finger 83.5 0.6 2E-05 34.2 2.3 52 163-227 20-74 (87)
4 1cz6_A Protein (androctonin); 32.0 12 0.0004 22.9 0.4 8 189-196 16-23 (26)
5 1xiw_B T-cell surface glycopro 19.8 24 0.00084 25.6 0.2 26 168-193 17-52 (79)
6 1oz9_A Hypothetical protein AQ 19.4 70 0.0024 25.9 2.9 36 14-60 38-74 (150)
7 1xiw_A T-cell surface glycopro 12.7 53 0.0018 25.8 0.5 29 167-195 32-79 (105)
8 1xax_A Hypothetical UPF0054 pr 12.5 1.3E+02 0.0044 24.5 2.8 36 14-60 36-72 (154)
9 2cp8_A NEXT to BRCA1 gene 1 pr 11.4 61 0.0021 22.7 0.4 16 33-50 12-27 (54)
10 1xm5_A Hypothetical UPF0054 pr 10.7 1.3E+02 0.0045 24.5 2.3 35 15-60 37-72 (155)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=2.3e-35 Score=223.05 Aligned_cols=74 Identities=54% Similarity=0.979 Sum_probs=71.4
Q ss_pred ceEEeecCccccCCCCccccccCcccccCCCCCcccccccCCCCccccceeeecCCCCeEEEEEeecCCCCCCC
Q 026216 155 RFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCD 228 (241)
Q Consensus 155 r~~~qt~s~~~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCT~~gC~AkKqVQr~~~D~~~~~tTY~G~HnH~~~~ 228 (241)
|++|+|.+++++++|||.|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+.+.
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999763
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.8e-35 Score=224.68 Aligned_cols=74 Identities=57% Similarity=0.978 Sum_probs=68.7
Q ss_pred CceEEeecCccccCCCCccccccCcccccCCCCCcccccccCCCCccccceeeecCCCCeEEEEEeecCCCCCC
Q 026216 154 PRFCFQTRSDVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPC 227 (241)
Q Consensus 154 pr~~~qt~s~~~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCT~~gC~AkKqVQr~~~D~~~~~tTY~G~HnH~~~ 227 (241)
.+++|+|.+++++++|||.|||||||.|+|+++||+||||++++|+|+|+|||+++|+.+++|||+|+|||+.+
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999976
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=83.48 E-value=0.6 Score=34.16 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=33.5
Q ss_pred ccccCCCCccccccCcccccCCCCCcccccccC---CCCccccceeeecCCCCeEEEEEeecCCCCCC
Q 026216 163 DVDVLDDGYKWRKYGQKIVKNSLHPRSYYRCTH---NNCRVKKRVERLSEDCRMVITTYEGRHNHSPC 227 (241)
Q Consensus 163 ~~~~~dDGy~WRKYGQK~Ikgs~~PRsYYRCT~---~gC~AkKqVQr~~~D~~~~~tTY~G~HnH~~~ 227 (241)
...++-|||.-.+--+ ...+.|.+|+. .+|+|+=.... +. +.-.+.|||+|.
T Consensus 20 ~~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~~----~~~~~~HnH~p~ 74 (87)
T 2rpr_A 20 GRFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---HR----IMVMRSHCHQPD 74 (87)
T ss_dssp EEEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---TE----EEECSCCSSCCC
T ss_pred CcEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---CC----EECCCCcCCCCc
Confidence 3357789997664221 13368999997 38999754332 21 235789999874
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=31.97 E-value=12 Score=22.87 Aligned_cols=8 Identities=50% Similarity=1.410 Sum_probs=6.6
Q ss_pred ccccccCC
Q 026216 189 SYYRCTHN 196 (241)
Q Consensus 189 sYYRCT~~ 196 (241)
.||+|+++
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999974
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=19.77 E-value=24 Score=25.56 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=18.5
Q ss_pred CCCccccccCccc--------cc--CCCCCcccccc
Q 026216 168 DDGYKWRKYGQKI--------VK--NSLHPRSYYRC 193 (241)
Q Consensus 168 dDGy~WRKYGQK~--------Ik--gs~~PRsYYRC 193 (241)
.+++.|.|-|... ++ ...-||.+|.|
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C 52 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRC 52 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEE
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEe
Confidence 6678899977642 22 34458999999
No 6
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSG structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15
Probab=19.44 E-value=70 Score=25.86 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=27.8
Q ss_pred CCCceEEEeeecHHHHHHHHHHHHhccCCccccc-cccccccEeEecc
Q 026216 14 IPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDF-DENHEHQVLSFMG 60 (241)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 60 (241)
++.+||-+.|...+. |++++. +| ..+.-+.||||=.
T Consensus 38 ~~~~elsv~~vdd~~--------i~~LN~---~yR~~d~pTDVLSFp~ 74 (150)
T 1oz9_A 38 LNNVELSVYITDDQE--------IRELNK---TYRKKDKPTDVLSFPM 74 (150)
T ss_dssp CCSEEEEEEEECHHH--------HHHHHH---HHHSCCSCCSEEEEEC
T ss_pred CCceEEEEEEECHHH--------HHHHHH---HHhCCCCCCcEEeecC
Confidence 478999999998877 899882 33 3456789999955
No 7
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=12.72 E-value=53 Score=25.76 Aligned_cols=29 Identities=17% Similarity=0.436 Sum_probs=19.3
Q ss_pred CCCCccccccCccc----------------ccCCCC---CcccccccC
Q 026216 167 LDDGYKWRKYGQKI----------------VKNSLH---PRSYYRCTH 195 (241)
Q Consensus 167 ~dDGy~WRKYGQK~----------------Ikgs~~---PRsYYRCT~ 195 (241)
+.+...|.|-|+.. ++++.. ||.||+|..
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~ 79 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEcc
Confidence 34558888877552 345533 899999953
No 8
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae}
Probab=12.46 E-value=1.3e+02 Score=24.52 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=27.7
Q ss_pred CCCceEEEeeecHHHHHHHHHHHHhccCCccccc-cccccccEeEecc
Q 026216 14 IPNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDF-DENHEHQVLSFMG 60 (241)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 60 (241)
.+.+||-+.|...+. |++++. +| ..+.-+.||||=.
T Consensus 36 ~~~~elsv~~vdd~~--------i~~LN~---~yr~~d~pTDVLSFp~ 72 (154)
T 1xax_A 36 GNEVEMTVRIVDEAE--------SHELNL---TYRGKDRPTNVLSFPF 72 (154)
T ss_dssp CCCEEEEEEECCHHH--------HHHHHH---HHTCCCSSCSEEEECC
T ss_pred CCCcEEEEEEECHHH--------HHHHHH---HHhCCCCCCeEEeECC
Confidence 357999999998887 899882 33 3456789999954
No 9
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=11.41 E-value=61 Score=22.70 Aligned_cols=16 Identities=38% Similarity=0.343 Sum_probs=11.2
Q ss_pred HHHHHhccCCcccccccc
Q 026216 33 AAAAAQGMGSFVHDFDEN 50 (241)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~ 50 (241)
-.+-+.||| |. +.+.|
T Consensus 12 ~L~~L~eMG-F~-D~~~N 27 (54)
T 2cp8_A 12 LMAHLFEMG-FC-DRQLN 27 (54)
T ss_dssp HHHHHHHHT-CC-CHHHH
T ss_pred HHHHHHHcC-CC-cHHHH
Confidence 345689999 87 66633
No 10
>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15
Probab=10.66 E-value=1.3e+02 Score=24.47 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=27.0
Q ss_pred CCceEEEeeecHHHHHHHHHHHHhccCCccccc-cccccccEeEecc
Q 026216 15 PNYEVQASFTTAEAEAAAAAAAAQGMGSFVHDF-DENHEHQVLSFMG 60 (241)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 60 (241)
+.+||-|.|...+. |++++. +| ..+.-+.||||=.
T Consensus 37 ~~~elsv~~vdd~~--------i~~LN~---~yr~~d~pTDVLSFp~ 72 (155)
T 1xm5_A 37 EESEVTIRVVDTAE--------SHSLNL---TYRGKDKPTNVLSFPF 72 (155)
T ss_dssp SEEEEEEEEECHHH--------HHHHHH---HHHCCSSCCSEEEEEC
T ss_pred CCcEEEEEEECHHH--------HHHHHH---HHhCCCCCCeEEeECC
Confidence 57899999998887 899882 33 3456789999955
Done!