BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026218
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 60 CG--FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG F++A ++SG + TWG D + S H P V+ A G HCV
Sbjct: 272 CGSQFSVALTKSGAVYTWGKGDYHRLGH-GSDDHVRRPRQVQGLQGKKVIAIATGSLHCV 330
Query: 118 SVTEAGEVYTWG 129
TE GEVYTWG
Sbjct: 331 CCTEDGEVYTWG 342
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAAGWAHCV 117
LA S G++ +WG A+D G +P P E+ VV AAG AH
Sbjct: 118 HCLALSSEGEVYSWGEAEDG-----KLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSA 172
Query: 118 SVTEAGEVYTWG 129
VT AG++YTWG
Sbjct: 173 CVTAAGDLYTWG 184
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 22 VYMWG---YLPGTSPEKSPILSPIPARLCGGDSWKDV-CGGGCGFALATSESGKLITWGS 77
+Y WG Y + L P G D+ CG G L ++ + +WG
Sbjct: 180 LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGD 239
Query: 78 ADDEGQSYLTSGKHGETPEPFPLPTEA----SVVKAAAGWAHCVSVTEAGEVYTWG 129
D Y G+ G P+ ++ VVK G V++T++G VYTWG
Sbjct: 240 GD-----YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 290
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 107 VKAAAGWAHCVSVTEAGEVYTWG 129
V +G HC++++ GEVY+WG
Sbjct: 110 VAVNSGGKHCLALSSEGEVYSWG 132
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 58/211 (27%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 118 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 156
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K++
Sbjct: 157 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 216
Query: 216 KVAAGGRHTLILS--------GYRKYEAIGR 238
VA G RHT+ +S G+ KY +G
Sbjct: 217 MVACGWRHTISVSYSGALYTYGWSKYGQLGH 247
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWGYLPGT---SPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG+ S + +P+P + G K + CG LA + G++ +WG
Sbjct: 78 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEGEVQSWG 134
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 135 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 187
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 272 GGWRHTMALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 330
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 331 AVTERNNVFAWG 342
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 25/184 (13%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G L WG G L PE + A GW H +SV+ +G
Sbjct: 175 AVTEDGDLYGWGWGR-YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSS 184
+YT+GW + +G G + +P + S+ + R T +
Sbjct: 234 LYTYGWSK----------YGQLGHGDLED----HLIPHKLEALSNSFISQISGGWRHTMA 279
Query: 185 AREESE----------NPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYE 234
+ + G+ SP V K+ +V+ G RHTL ++
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 339
Query: 235 AIGR 238
A GR
Sbjct: 340 AWGR 343
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 60 CGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG+ ++ S SG L T+G + GQ + P + + + + + GW H +
Sbjct: 220 CGWRHTISVSYSGALYTYGWSK-YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTM 278
Query: 118 SVTEAGEVYTWGWRE 132
++T G++Y WGW +
Sbjct: 279 ALTSDGKLYGWGWNK 293
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 58/211 (27%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 64 GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 117
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 118 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 156
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K++
Sbjct: 157 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 216
Query: 216 KVAAGGRHTLILS--------GYRKYEAIGR 238
VA G RHT+ +S G+ KY +G
Sbjct: 217 MVACGWRHTISVSYSGALYTYGWSKYGQLGH 247
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWG---YLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG + S + +P+P + G K + CG LA + G++ +WG
Sbjct: 78 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEGEVQSWG 134
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 135 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 187
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 272 GGFRHTMALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 330
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 331 AVTERNNVFAWG 342
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 25/184 (13%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G L WG G L PE + A GW H +SV+ +G
Sbjct: 175 AVTEDGDLYGWGWGR-YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 233
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSS 184
+YT+GW + +G G + +P + S+ + R T +
Sbjct: 234 LYTYGWSK----------YGQLGHGDLED----HLIPHKLEALSNSFISQISGGFRHTMA 279
Query: 185 AREESE----------NPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYE 234
+ + G+ SP V K+ +V+ G RHTL ++
Sbjct: 280 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 339
Query: 235 AIGR 238
A GR
Sbjct: 340 AWGR 343
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 60 CGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG+ ++ S SG L T+G + GQ + P + + + + + G+ H +
Sbjct: 220 CGWRHTISVSYSGALYTYGWSK-YGQLGHGDLEDHLIPHKLEALSNSFISQISGGFRHTM 278
Query: 118 SVTEAGEVYTWGWRE 132
++T G++Y WGW +
Sbjct: 279 ALTSDGKLYGWGWNK 293
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 58/211 (27%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 76 GADHTVAYSQSGMEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 129
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 130 DSHCLAVTMEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 168
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K++
Sbjct: 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMS 228
Query: 216 KVAAGGRHTLILS--------GYRKYEAIGR 238
VA G RHT+ +S G+ KY +G
Sbjct: 229 MVACGWRHTISVSYSGALYTYGWSKYGQLGH 259
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWGYLPGT---SPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG+ S + +P+P + G K + CG LA + G++ +WG
Sbjct: 90 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTMEGEVQSWG 146
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 147 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGW 199
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG +A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 284 GGWRHTMALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 342
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 343 AVTERNNVFAWG 354
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 60 CGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG+ ++ S SG L T+G + GQ + P + + + + + GW H +
Sbjct: 232 CGWRHTISVSYSGALYTYGWSK-YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTM 290
Query: 118 SVTEAGEVYTWGWRE 132
++T G++Y WGW +
Sbjct: 291 ALTSDGKLYGWGWNK 305
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 25/184 (13%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G L WG G L PE + A GW H +SV+ +G
Sbjct: 187 AVTEDGDLYGWGWGR-YGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGA 245
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSS 184
+YT+GW + +G G + +P + S+ + R T +
Sbjct: 246 LYTYGWSK----------YGQLGHGDLE----DHLIPHKLEALSNSFISQISGGWRHTMA 291
Query: 185 AREESE----------NPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYE 234
+ + G+ SP V K+ +V+ G RHTL ++
Sbjct: 292 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 351
Query: 235 AIGR 238
A GR
Sbjct: 352 AWGR 355
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 22 VYMWG---YLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG--FALATSESGKLITWG 76
VY WG + S + +P+P + G K + CG LA + G++ +WG
Sbjct: 80 VYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA---CGDSHCLAVTXEGEVQSWG 136
Query: 77 SADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130
+ GQ L + P+ + AAG H +VTE G++Y WGW
Sbjct: 137 R-NQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGW 189
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 58/211 (27%)
Query: 59 GCGFALATSESG-KLITWGSADDEGQSYLTSGKHGETPEPF-PLPTEA----SVVKAAAG 112
G +A S+SG ++ +WG D HG + + F PLP +A + + A G
Sbjct: 66 GADHTVAYSQSGXEVYSWGWGD------FGRLGHGNSSDLFTPLPIKALHGIRIKQIACG 119
Query: 113 WAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRA 172
+HC++VT GEV +WG ++ G+ TE + K
Sbjct: 120 DSHCLAVTXEGEVQSWG---------------------RNQNGQLGLGDTEDSLVPQKIQ 158
Query: 173 GEEVVKRRKTSSAREESE-----------------NPASGDEFFTLSPCLVTLNPGVKIT 215
E ++ + ++ E + N GD L P VT G K +
Sbjct: 159 AFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKXS 218
Query: 216 KVAAGGRHTLILS--------GYRKYEAIGR 238
VA G RHT+ +S G+ KY +G
Sbjct: 219 XVACGWRHTISVSYSGALYTYGWSKYGQLGH 249
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 58 GGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
GG A + GKL WG + GQ + + +P P + VV+ + GW H +
Sbjct: 274 GGARHTXALTSDGKLYGWG-WNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTL 332
Query: 118 SVTEAGEVYTWG 129
+VTE V+ WG
Sbjct: 333 AVTERNNVFAWG 344
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 63/184 (34%), Gaps = 25/184 (13%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A +E G L WG G L PE A GW H +SV+ +G
Sbjct: 177 AVTEDGDLYGWGWGR-YGNLGLGDRTDRLVPERVTSTGGEKXSXVACGWRHTISVSYSGA 235
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSS 184
+YT+GW + +G G + +P + S+ + R T +
Sbjct: 236 LYTYGWSK----------YGQLGHGDLED----HLIPHKLEALSNSFISQISGGARHTXA 281
Query: 185 AREESE----------NPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYE 234
+ + G+ SP V K+ +V+ G RHTL ++
Sbjct: 282 LTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 341
Query: 235 AIGR 238
A GR
Sbjct: 342 AWGR 345
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 60 CGF--ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCV 117
CG+ ++ S SG L T+G + GQ + P + + + + + G H
Sbjct: 222 CGWRHTISVSYSGALYTYGWSK-YGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTX 280
Query: 118 SVTEAGEVYTWGWRE 132
++T G++Y WGW +
Sbjct: 281 ALTSDGKLYGWGWNK 295
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 18/183 (9%)
Query: 68 ESGKLITWGS-ADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVY 126
E G++ WGS D G LT G P L A+G H V +T AG+V+
Sbjct: 144 EDGRVFAWGSFRDSHGNMGLTI--DGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVF 201
Query: 127 TWGWRECVPSAKVT-RDFGSAGSFQKDSTGKQSALPTEQAPPSD----------KRAGEE 175
T G E +++ R G K + + L +A P + R +
Sbjct: 202 TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQT 261
Query: 176 VVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEA 235
V + ++ + G E F L+P L I +A G HT+IL+ K
Sbjct: 262 QVIWATGLNNFKQLAHETKGKE-FALTPIKTELK---DIRHIAGGQHHTVILTTDLKCSV 317
Query: 236 IGR 238
+GR
Sbjct: 318 VGR 320
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 54 DVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET-PEPFPLPTEASVVKAAAG 112
D+ GG L ++SG + ++G D+ TS E+ P+ LP +A + +AG
Sbjct: 79 DISAGGM-HNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCI--SAG 135
Query: 113 WAHCVSVTEAGEVYTWG 129
+H + E G V+ WG
Sbjct: 136 DSHSACLLEDGRVFAWG 152
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A ++ G++ WGS D ++ P + + VVK A+G H V +T G+
Sbjct: 125 ALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD 184
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQ 150
+YT G E +V F + G Q
Sbjct: 185 LYTLGCGEQGQLGRVPELFANRGGRQ 210
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 35 KSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET 94
K P L IP + ++ G + S+SG++ ++G +DEG + G
Sbjct: 50 KKPALVSIPEDVVQAEA-------GGMHTVCLSKSGQVYSFG-CNDEGALGRDTSVEGSE 101
Query: 95 PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
P + + VV+ +AG +H ++T+ G V+ WG
Sbjct: 102 MVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 136
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 66 TSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEV 125
++E G ++T G D GQ L E +P + VV+A AG H V ++++G+V
Sbjct: 23 STEPGLVLTLGQGD-VGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQV 80
Query: 126 YTWGWRECVPSAKVTRDFGSAGS 148
Y++G C + RD GS
Sbjct: 81 YSFG---CNDEGALGRDTSVEGS 100
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 65 ATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE 124
A ++ G++ WGS D ++ P + + VVK A+G H V +T G+
Sbjct: 114 ALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGD 173
Query: 125 VYTWGWRECVPSAKVTRDFGSAGSFQ 150
+YT G E +V F + G Q
Sbjct: 174 LYTLGCGEQGQLGRVPELFANRGGRQ 199
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 35 KSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGET 94
K P L IP + ++ G + S+SG++ ++G +DEG + G
Sbjct: 39 KKPALVSIPEDVVQAEA-------GGMHTVCLSKSGQVYSFG-CNDEGALGRDTSVEGSE 90
Query: 95 PEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129
P + + VV+ +AG +H ++T+ G V+ WG
Sbjct: 91 MVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 125
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 66 TSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEV 125
++E G ++T G D GQ L E +P + VV+A AG H V ++++G+V
Sbjct: 12 STEPGLVLTLGQGD-VGQLGLGENVM-ERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQV 69
Query: 126 YTWGWRECVPSAKVTRDFGSAGS 148
Y++G C + RD GS
Sbjct: 70 YSFG---CNDEGALGRDTSVEGS 89
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 63 ALATSESGKLITWGSAD--------DEGQSYLTSGKHGETPEPFPLPTEASVV----KAA 110
+L S+ G L + G D D Y HG+ PLPT+ + V A
Sbjct: 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKA-RAVPLPTKLNNVPKFKSVA 383
Query: 111 AGWAHCVSVTEAGEVYTWGWRE 132
AG H V+V + G Y+WG+ E
Sbjct: 384 AGSHHSVAVAQNGIAYSWGFGE 405
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 24/191 (12%)
Query: 65 ATSESGKLITWGSAD-DEGQ--SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTE 121
A +G++ WG+ +EG Y K +TP P ++ ++V+ A G H + + E
Sbjct: 162 ALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDE 221
Query: 122 AGEVYTWGW-------RECVPSAKVT----RDFGSAGSFQKDSTGKQSALPTEQAPPSDK 170
G V+ WG R+ + ++ R FG + ++G+ A D
Sbjct: 222 EGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG-LRHVKYIASGENHCF----ALTKDN 276
Query: 171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGY 230
+ + + E+ E+ A P + L V I +AAG H+LILS
Sbjct: 277 KLVSWGLNQFGQCGVSEDVEDGA-----LVTKPKRLALPDNVVIRSIAAGEHHSLILSQD 331
Query: 231 RKYEAIGRFLM 241
+ GR M
Sbjct: 332 GDLYSCGRLDM 342
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 76 GSADDEGQSYLTSGKHGETP--EPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWREC 133
GS + G L K + P PF EA ++ A G H +++ E V++WG C
Sbjct: 37 GSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWG---C 93
Query: 134 VPSAKVTRDFGSA 146
+ RD +A
Sbjct: 94 NDVGALGRDTSNA 106
>pdb|1IDK|A Chain A, Pectin Lyase A
Length = 359
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 105 SVVKAAAGWAHCVSVTEAGEV-YTWGWRECVPSAKVTRDFGSAGSFQKDST 154
+V++ G A V + AGEV T+ R+CV + FGS+G+F +DST
Sbjct: 281 TVLETYEGEAFTVPSSTAGEVCSTYLGRDCVING-----FGSSGTFSEDST 326
>pdb|2ENY|A Chain A, Solution Structure Of The Ig-Like Domain (2735-2825) Of
Human Obscurin
Length = 104
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 141 RDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRR----KTSSAREESENPASG 195
+ GS+ FQ G++ L +A PSD AGE V R K S E P+SG
Sbjct: 48 KTVGSSSRFQATRQGRKYILVVREAAPSD--AGEVVFSVRGLTSKASLIVRERSGPSSG 104
>pdb|1IDJ|A Chain A, Pectin Lyase A
pdb|1IDJ|B Chain B, Pectin Lyase A
Length = 359
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 105 SVVKAAAGWAHCVSVTEAGEV-YTWGWRECVPSAKVTRDFGSAGSFQKDST 154
+V++ G A V T AGEV T+ R+CV + FG +G+F +DST
Sbjct: 281 TVLETYEGAAFTVPSTTAGEVCSTYLGRDCVING-----FGCSGTFSEDST 326
>pdb|1LBV|A Chain A, Crystal Structure Of Apo-Form (P21) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBV|B Chain B, Crystal Structure Of Apo-Form (P21) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBW|A Chain A, Crystal Structure Of Apo-Form (P32) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBW|B Chain B, Crystal Structure Of Apo-Form (P32) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBX|A Chain A, Crystal Structure Of A Ternary Complex Of Dual Activity
Fbpase/impase (af2372) From Archaeoglobus Fulgidus With
Calcium Ions And D-myo-inositol-1-phosphate
pdb|1LBX|B Chain B, Crystal Structure Of A Ternary Complex Of Dual Activity
Fbpase/impase (af2372) From Archaeoglobus Fulgidus With
Calcium Ions And D-myo-inositol-1-phosphate
pdb|1LBY|A Chain A, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Manganese Ions, Fructose-6-phosphate,
And Phosphate Ion
pdb|1LBY|B Chain B, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Manganese Ions, Fructose-6-phosphate,
And Phosphate Ion
pdb|1LBZ|A Chain A, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Calcium Ions And Fructose-1,6
Bisphosphate
pdb|1LBZ|B Chain B, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Calcium Ions And Fructose-1,6
Bisphosphate
Length = 252
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 151 KDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLN 209
KD + PT+ A + A E++++ + + EES GD F L P T N
Sbjct: 31 KDVGMGKDGTPTKAADRVAEDAALEILRKERVTVVTEESGVLGEGDVFVALDPLDGTFN 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,580,667
Number of Sequences: 62578
Number of extensions: 324439
Number of successful extensions: 607
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 52
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)