Query 026218
Match_columns 241
No_of_seqs 336 out of 1245
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1427 Uncharacterized conser 100.0 1E-31 2.3E-36 215.3 12.4 189 6-239 63-255 (443)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.1E-29 2.4E-34 215.2 15.2 180 7-241 182-369 (476)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 3.4E-28 7.3E-33 206.2 14.4 177 5-239 108-311 (476)
4 KOG1427 Uncharacterized conser 99.9 3.8E-25 8.2E-30 177.7 9.5 163 18-237 18-187 (443)
5 KOG0783 Uncharacterized conser 99.9 6E-24 1.3E-28 189.3 7.5 173 13-240 135-312 (1267)
6 KOG1428 Inhibitor of type V ad 99.8 8.3E-20 1.8E-24 169.2 13.4 81 103-239 766-846 (3738)
7 KOG0783 Uncharacterized conser 99.8 2.8E-19 6E-24 159.9 12.7 170 9-238 185-361 (1267)
8 KOG1428 Inhibitor of type V ad 99.7 7.1E-16 1.5E-20 143.7 14.7 91 50-142 767-857 (3738)
9 PF00415 RCC1: Regulator of ch 99.5 4.5E-15 9.7E-20 91.5 2.8 50 69-119 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.4 1.4E-13 3.1E-18 84.7 4.9 30 198-227 22-51 (51)
11 PF13540 RCC1_2: Regulator of 99.4 2.2E-13 4.9E-18 73.8 3.7 30 106-135 1-30 (30)
12 KOG0941 E3 ubiquitin protein l 99.2 1.3E-13 2.8E-18 124.4 -6.8 141 41-239 5-153 (850)
13 PF13540 RCC1_2: Regulator of 99.2 5E-11 1.1E-15 64.5 4.0 27 214-240 1-27 (30)
14 KOG0941 E3 ubiquitin protein l 98.6 9.7E-10 2.1E-14 99.8 -4.6 90 94-239 4-100 (850)
15 COG4257 Vgb Streptogramin lyas 92.3 2.8 6.1E-05 34.9 10.5 102 13-133 66-169 (353)
16 KOG0315 G-protein beta subunit 90.8 8 0.00017 31.7 11.7 24 109-132 132-155 (311)
17 KOG3669 Uncharacterized conser 90.3 7.3 0.00016 35.6 11.9 71 51-128 228-299 (705)
18 KOG3669 Uncharacterized conser 87.9 7.3 0.00016 35.6 10.2 22 214-235 277-298 (705)
19 KOG0943 Predicted ubiquitin-pr 86.9 0.92 2E-05 44.8 4.4 80 103-236 373-453 (3015)
20 smart00706 TECPR Beta propelle 86.8 1.6 3.6E-05 23.7 3.8 25 212-236 8-33 (35)
21 smart00706 TECPR Beta propelle 85.2 1.8 4E-05 23.5 3.5 25 104-128 8-33 (35)
22 PF07569 Hira: TUP1-like enhan 84.1 3.9 8.5E-05 32.8 6.3 70 9-78 21-95 (219)
23 PF11725 AvrE: Pathogenicity f 82.9 10 0.00022 39.1 9.5 71 44-128 697-769 (1774)
24 PF07569 Hira: TUP1-like enhan 82.0 2.1 4.7E-05 34.3 4.0 30 103-132 12-41 (219)
25 KOG1034 Transcriptional repres 76.7 8.7 0.00019 32.7 6.0 56 17-77 326-382 (385)
26 KOG0293 WD40 repeat-containing 76.6 34 0.00074 30.2 9.6 26 213-238 442-469 (519)
27 PF06739 SBBP: Beta-propeller 76.4 2.8 6E-05 23.5 2.2 19 114-132 15-33 (38)
28 PF12341 DUF3639: Protein of u 75.4 9.4 0.0002 19.7 3.9 25 103-127 1-25 (27)
29 KOG0943 Predicted ubiquitin-pr 72.1 8.1 0.00018 38.7 5.3 66 62-128 385-453 (3015)
30 PRK05560 DNA gyrase subunit A; 62.6 1.6E+02 0.0034 28.8 12.2 114 10-128 498-619 (805)
31 PF13418 Kelch_4: Galactose ox 62.3 7.1 0.00015 22.7 2.0 17 113-129 3-19 (49)
32 KOG1034 Transcriptional repres 62.0 22 0.00047 30.4 5.3 39 201-239 343-383 (385)
33 KOG1900 Nuclear pore complex, 61.6 1.4E+02 0.0031 30.5 11.4 63 14-78 93-157 (1311)
34 TIGR03300 assembly_YfgL outer 61.1 1.1E+02 0.0023 26.3 12.2 15 222-236 362-376 (377)
35 KOG0315 G-protein beta subunit 60.9 95 0.0021 25.7 13.8 59 62-132 138-198 (311)
36 KOG1274 WD40 repeat protein [G 57.0 2E+02 0.0043 28.2 11.7 68 62-133 17-88 (933)
37 TIGR01062 parC_Gneg DNA topois 56.9 1.9E+02 0.0041 27.9 15.7 110 11-133 495-607 (735)
38 KOG0646 WD40 repeat protein [G 56.6 1.5E+02 0.0032 26.6 12.6 56 14-78 97-153 (476)
39 KOG0649 WD40 repeat protein [G 56.6 97 0.0021 25.6 8.0 16 14-29 75-90 (325)
40 COG4257 Vgb Streptogramin lyas 56.0 57 0.0012 27.4 6.7 55 62-128 151-205 (353)
41 PF02239 Cytochrom_D1: Cytochr 54.6 1.4E+02 0.003 26.0 9.5 64 52-129 29-95 (369)
42 PF01436 NHL: NHL repeat; Int 52.9 24 0.00052 18.0 2.8 18 115-132 5-22 (28)
43 TIGR01063 gyrA DNA gyrase, A s 52.3 2.4E+02 0.0051 27.6 11.9 69 62-132 548-621 (800)
44 PF08450 SGL: SMP-30/Gluconola 52.0 1.1E+02 0.0023 24.5 8.0 105 13-130 90-202 (246)
45 PF10168 Nup88: Nuclear pore c 51.0 1.9E+02 0.0042 27.8 10.3 27 103-129 146-177 (717)
46 PRK05560 DNA gyrase subunit A; 48.6 2.7E+02 0.0059 27.2 14.4 111 13-132 551-671 (805)
47 PF07312 DUF1459: Protein of u 48.5 15 0.00032 24.2 1.9 13 21-33 57-70 (84)
48 PF03785 Peptidase_C25_C: Pept 48.4 66 0.0014 21.4 4.9 36 200-237 6-42 (81)
49 TIGR01063 gyrA DNA gyrase, A s 48.3 2.7E+02 0.0059 27.2 14.9 112 13-133 549-670 (800)
50 KOG0649 WD40 repeat protein [G 46.8 1.7E+02 0.0036 24.3 7.9 30 103-133 62-91 (325)
51 TIGR03300 assembly_YfgL outer 45.6 1.6E+02 0.0035 25.2 8.6 15 114-128 362-376 (377)
52 PF13938 DUF4213: Domain of un 44.2 28 0.00061 23.3 2.9 24 209-232 9-32 (87)
53 TIGR01062 parC_Gneg DNA topois 43.3 2.2E+02 0.0047 27.6 9.4 119 11-138 537-661 (735)
54 PF13854 Kelch_5: Kelch motif 42.7 28 0.0006 19.6 2.3 16 113-129 6-21 (42)
55 KOG4693 Uncharacterized conser 41.5 99 0.0022 25.9 6.0 60 60-130 80-147 (392)
56 KOG0289 mRNA splicing factor [ 40.7 2.7E+02 0.0059 25.0 10.3 69 62-133 351-421 (506)
57 KOG2055 WD40 repeat protein [G 40.2 84 0.0018 28.2 5.7 49 13-78 359-407 (514)
58 PF07494 Reg_prop: Two compone 39.3 40 0.00087 16.5 2.3 14 115-128 8-21 (24)
59 KOG0278 Serine/threonine kinas 38.8 2.3E+02 0.005 23.6 10.1 67 17-99 162-228 (334)
60 KOG2444 WD40 repeat protein [G 37.1 92 0.002 25.3 5.1 61 62-133 72-134 (238)
61 PF11725 AvrE: Pathogenicity f 35.2 2.4E+02 0.0052 29.8 8.6 72 50-123 744-815 (1774)
62 KOG0307 Vesicle coat complex C 33.4 99 0.0022 30.7 5.5 36 105-140 255-293 (1049)
63 KOG2275 Aminoacylase ACY1 and 32.2 23 0.0005 31.2 1.1 19 223-241 112-130 (420)
64 PRK13979 DNA topoisomerase IV 30.4 5.7E+02 0.012 25.7 15.2 153 14-234 567-767 (957)
65 PF07646 Kelch_2: Kelch motif; 30.2 52 0.0011 19.0 2.2 16 115-131 5-20 (49)
66 PF06204 CBM_X: Putative carbo 29.9 1.2E+02 0.0027 19.2 3.9 30 104-133 25-54 (66)
67 PLN03215 ascorbic acid mannose 29.7 3.1E+02 0.0067 24.1 7.5 27 106-132 162-191 (373)
68 KOG0316 Conserved WD40 repeat- 29.5 1.6E+02 0.0034 24.3 5.2 56 62-129 241-297 (307)
69 KOG1274 WD40 repeat protein [G 29.1 5.7E+02 0.012 25.3 9.9 64 65-128 483-549 (933)
70 KOG1539 WD repeat protein [Gen 28.0 2.4E+02 0.0052 27.4 6.9 57 62-132 87-143 (910)
71 PF13964 Kelch_6: Kelch motif 27.9 69 0.0015 18.4 2.5 18 222-240 4-21 (50)
72 PF13570 PQQ_3: PQQ-like domai 27.8 92 0.002 17.0 2.8 20 218-237 18-37 (40)
73 PF08887 GAD-like: GAD-like do 26.9 57 0.0012 23.1 2.2 20 221-240 79-98 (109)
74 PF02239 Cytochrom_D1: Cytochr 26.6 1.6E+02 0.0035 25.6 5.4 106 13-129 41-156 (369)
75 PF13186 SPASM: Iron-sulfur cl 26.2 57 0.0012 19.7 1.9 15 11-25 5-19 (64)
76 cd00265 MADS_MEF2_like MEF2 (m 24.5 1.2E+02 0.0026 19.8 3.3 25 108-132 35-60 (77)
77 KOG1900 Nuclear pore complex, 24.5 3.8E+02 0.0082 27.6 7.8 62 63-132 92-158 (1311)
78 COG5308 NUP170 Nuclear pore co 24.3 1.1E+02 0.0024 30.1 4.1 103 13-132 95-202 (1263)
79 PF05862 IceA2: Helicobacter p 23.6 1.7E+02 0.0037 17.9 3.4 26 103-128 25-50 (59)
80 KOG2055 WD40 repeat protein [G 23.3 5.7E+02 0.012 23.2 12.8 51 62-132 358-408 (514)
81 PF06462 Hyd_WA: Propeller; I 23.2 1.1E+02 0.0023 16.3 2.3 13 115-127 2-14 (32)
82 KOG1230 Protein containing rep 22.2 5.8E+02 0.013 22.9 8.9 19 221-239 233-251 (521)
83 TIGR01061 parC_Gpos DNA topois 21.4 5.2E+02 0.011 25.1 8.0 67 62-130 544-616 (738)
84 PF09081 DUF1921: Domain of un 20.7 70 0.0015 18.8 1.3 20 216-236 30-50 (51)
85 PLN02153 epithiospecifier prot 20.5 5.3E+02 0.011 21.8 10.3 17 114-131 244-260 (341)
86 KOG0883 Cyclophilin type, U bo 20.1 92 0.002 27.3 2.5 19 219-237 112-130 (518)
No 1
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.97 E-value=1e-31 Score=215.33 Aligned_cols=189 Identities=19% Similarity=0.168 Sum_probs=147.1
Q ss_pred ccccCceeEEEecCCcEEEcccCC-CCCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCC
Q 026218 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG 82 (241)
Q Consensus 6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~G 82 (241)
+++.+.|.+.|+-+|+.|+||.|. ||++... ....|+.|.-++..+|++.++ +.+|+++||++|+||+||.| .+|
T Consensus 63 sG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~-GrnHTl~ltdtG~v~afGeN-K~G 140 (443)
T KOG1427|consen 63 SGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAA-GRNHTLVLTDTGQVLAFGEN-KYG 140 (443)
T ss_pred cccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhh-ccCcEEEEecCCcEEEeccc-ccc
Confidence 567778899999999999999997 7887664 345677787777778888887 56799999999999999999 999
Q ss_pred ccccCCCC-CcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCC
Q 026218 83 QSYLTSGK-HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALP 161 (241)
Q Consensus 83 qlG~~~~~-~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~ 161 (241)
|||+++.. .+..|.++-.- ...|+.|+||.++++.|+..+.+.++|...|||||+-... .+
T Consensus 141 QlGlgn~~~~v~s~~~~~~~-~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~----------------~~- 202 (443)
T KOG1427|consen 141 QLGLGNAKNEVESTPLPCVV-SDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDN----------------EF- 202 (443)
T ss_pred cccccccccccccCCCcccc-CccceeeccccceEEEeecccceeecCCccccccccCcch----------------hh-
Confidence 99999654 33333333322 4679999999999999999999999999999998852110 00
Q ss_pred CCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecC
Q 026218 162 TEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRF 239 (241)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~ 239 (241)
..+-..+.+. ...++.|..|..+.+..|+++|||.+|++|++++++||+||-.
T Consensus 203 --------------~~~~~~~~~~-----------~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFG 255 (443)
T KOG1427|consen 203 --------------NMKDSSVRLA-----------YEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFG 255 (443)
T ss_pred --------------ccccccceee-----------eecCCCccccccccceeeEEEeccCcceeeecCCccEEEeccc
Confidence 0000011111 2245667778888999999999999999999999999999953
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.97 E-value=1.1e-29 Score=215.24 Aligned_cols=180 Identities=22% Similarity=0.271 Sum_probs=138.2
Q ss_pred cccCceeEEEecCCcEEEcccCC---CCCCCCC----CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCC
Q 026218 7 KREENEKMEECKETVVYMWGYLP---GTSPEKS----PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSAD 79 (241)
Q Consensus 7 ~~~~~~~l~~t~~G~vy~wG~n~---g~~~~~~----~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~ 79 (241)
.|+...+.+++++|+||+||... +..+... ....++|+.++ ...+.++++ ++.|.++|+++|+||+||+|
T Consensus 182 ~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~-G~dh~i~lt~~G~vy~~Gs~- 258 (476)
T COG5184 182 ACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAA-GADHLIALTNEGKVYGWGSN- 258 (476)
T ss_pred ecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeecc-CCceEEEEecCCcEEEecCC-
Confidence 46677899999999999999753 2222112 22446666666 467889998 56799999999999999999
Q ss_pred CCCccccCCCCCcCCceeeCCCC-CCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcC
Q 026218 80 DEGQSYLTSGKHGETPEPFPLPT-EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQS 158 (241)
Q Consensus 80 ~~GqlG~~~~~~~~~p~~v~~~~-~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~ 158 (241)
+.||||....+....+.+++.+. -..|+.|+||.+|++||+++|+||+||.|.+||||.- .+
T Consensus 259 qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~-~~---------------- 321 (476)
T COG5184 259 QKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAG-SD---------------- 321 (476)
T ss_pred cccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccC-cc----------------
Confidence 99999987554444444433221 1238899999999999999999999999999988832 00
Q ss_pred CCCCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeec
Q 026218 159 ALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGR 238 (241)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~ 238 (241)
.........|.....+.+..|.+|++|..|+++|..+|.||+|||
T Consensus 322 -----------------------------------~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr 366 (476)
T COG5184 322 -----------------------------------GEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGR 366 (476)
T ss_pred -----------------------------------cccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecC
Confidence 001124567777777788889999999999999999999999999
Q ss_pred CCC
Q 026218 239 FLM 241 (241)
Q Consensus 239 ~~~ 241 (241)
+||
T Consensus 367 ~~~ 369 (476)
T COG5184 367 GDR 369 (476)
T ss_pred Ccc
Confidence 986
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.96 E-value=3.4e-28 Score=206.21 Aligned_cols=177 Identities=21% Similarity=0.278 Sum_probs=129.6
Q ss_pred cccccCceeEEEecCCcEEEcccCC-CCCCCCC---------------C---cccceeeee----cCCCCceeEEecCCC
Q 026218 5 GSKREENEKMEECKETVVYMWGYLP-GTSPEKS---------------P---ILSPIPARL----CGGDSWKDVCGGGCG 61 (241)
Q Consensus 5 ~~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~---------------~---~~~p~~~~~----~~~~~i~~v~~~~~~ 61 (241)
+..++.+|+++++.||.||+||.|. |.++... . ...|..+.. ....++++++|+ ..
T Consensus 108 ~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg-~e 186 (476)
T COG5184 108 KIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACG-WE 186 (476)
T ss_pred EeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecC-Cc
Confidence 4457889999999999999999986 4444333 1 334444444 114478899994 45
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcC----CceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGE----TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSA 137 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~----~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG 137 (241)
++++|+++|+||+||.+ ..+.++.+...... .+.++.++ ...|+++|+|.+|.++|+++|+||.||+|..||||
T Consensus 187 ~svil~~~G~V~~~gt~-r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG 264 (476)
T COG5184 187 ISVILTADGRVYSWGTF-RCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLG 264 (476)
T ss_pred eEEEEccCCcEEEecCc-cccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccC
Confidence 99999999999999999 88888887443322 24555554 56799999999999999999999999999999888
Q ss_pred CccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEE
Q 026218 138 KVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKV 217 (241)
Q Consensus 138 ~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~I 217 (241)
+.-.. ++ ......|..+. -..|+.|
T Consensus 265 ~~~~e-----~~-----------------------------------------------~~~~lv~~~f~---i~~i~~v 289 (476)
T COG5184 265 RPTSE-----RL-----------------------------------------------KLVVLVGDPFA---IRNIKYV 289 (476)
T ss_pred Cchhh-----hc-----------------------------------------------ccccccCChhh---hhhhhhc
Confidence 53210 00 00111122111 1238899
Q ss_pred ecCCCeeEEEecCCcEEEeecC
Q 026218 218 AAGGRHTLILSGYRKYEAIGRF 239 (241)
Q Consensus 218 a~G~~hs~alt~~G~vy~wG~~ 239 (241)
+||.+|++||+++|+||+||-+
T Consensus 290 acG~~h~~al~~~G~i~a~G~n 311 (476)
T COG5184 290 ACGKDHSLALDEDGEIYAWGVN 311 (476)
T ss_pred ccCcceEEEEcCCCeEEEeccc
Confidence 9999999999999999999964
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.92 E-value=3.8e-25 Score=177.74 Aligned_cols=163 Identities=24% Similarity=0.261 Sum_probs=128.0
Q ss_pred cCCcEEEcccCC------CCCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCccccCCCC
Q 026218 18 KETVVYMWGYLP------GTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGK 90 (241)
Q Consensus 18 ~~G~vy~wG~n~------g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~~~~ 90 (241)
+-|++..+|.-. ...........|..+.-+.+.+|+.|+++.+. |+++|+-+|++|+||.| ..||||+++..
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRN-ekGQLGhgD~k 96 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRN-EKGQLGHGDMK 96 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccC-ccCccCccchh
Confidence 567777777432 11122224566777777778889999995444 99999999999999999 99999999888
Q ss_pred CcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCc
Q 026218 91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDK 170 (241)
Q Consensus 91 ~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (241)
....|+.|+.+...+|++.|||++|+++||++|+||.||.|.+||||.-
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlg------------------------------- 145 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLG------------------------------- 145 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccccc-------------------------------
Confidence 8999999999999999999999999999999999999999999988821
Q ss_pred ccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEee
Q 026218 171 RAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIG 237 (241)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG 237 (241)
.. ......|.++- ..+.+|+.|+||..+++.|+..+.|.++|
T Consensus 146 ---n~---------------------~~~v~s~~~~~-~~~~~v~~v~cga~ftv~l~~~~si~t~g 187 (443)
T KOG1427|consen 146 ---NA---------------------KNEVESTPLPC-VVSDEVTNVACGADFTVWLSSTESILTAG 187 (443)
T ss_pred ---cc---------------------ccccccCCCcc-ccCccceeeccccceEEEeecccceeecC
Confidence 00 00112222221 12347999999999999999999999887
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.90 E-value=6e-24 Score=189.31 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=136.8
Q ss_pred eEEEecCCcEEEcccCCC-CC--CCCCCcccceeeeecC--CCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccC
Q 026218 13 KMEECKETVVYMWGYLPG-TS--PEKSPILSPIPARLCG--GDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLT 87 (241)
Q Consensus 13 ~l~~t~~G~vy~wG~n~g-~~--~~~~~~~~p~~~~~~~--~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~ 87 (241)
-+..|...+||+||.|.+ .+ +.......|..+.++. +.-+++|+. +..|+++|++.|+||+||.+ .-|.||++
T Consensus 135 ~~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l-~kfHSvfl~~kgqvY~cGhG-~GGRlG~g 212 (1267)
T KOG0783|consen 135 HPVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQL-SKFHSVFLTEKGQVYVCGHG-AGGRLGFG 212 (1267)
T ss_pred ccccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHH-hhceeeEecCCCcEEEeccC-CCCccCcC
Confidence 467788899999999852 22 3334556777777664 455778887 34599999999999999999 89999999
Q ss_pred CCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCC
Q 026218 88 SGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP 167 (241)
Q Consensus 88 ~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 167 (241)
+......|+.|+.+.+.+|.+|++...|+++||++|.||+||.|.++|||..... +
T Consensus 213 deq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~-----------~------------- 268 (1267)
T KOG0783|consen 213 DEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDE-----------L------------- 268 (1267)
T ss_pred cccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCch-----------h-------------
Confidence 8888899999999999999999999999999999999999999999988843210 0
Q ss_pred CCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218 168 SDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~ 240 (241)
.-+...+..|.+++... .|+.|+||..|++|.|+. .||+||-|.
T Consensus 269 --------------------------~~~~p~qI~a~r~kg~~--~iIgvaAg~~hsVawt~~-~VY~wGlN~ 312 (1267)
T KOG0783|consen 269 --------------------------KKDDPIQITARRIKGFK--QIIGVAAGKSHSVAWTDT-DVYSWGLNN 312 (1267)
T ss_pred --------------------------hcCchhhhhhHhhcchh--hhhhhhcccceeeeeecc-eEEEecccC
Confidence 01122344555555432 799999999999999964 799999763
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.82 E-value=8.3e-20 Score=169.24 Aligned_cols=81 Identities=26% Similarity=0.338 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCceeeeecee
Q 026218 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT 182 (241)
Q Consensus 103 ~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (241)
+.++++|+||.+|+++|.++++||+||+|.+||||
T Consensus 766 dvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG--------------------------------------------- 800 (3738)
T KOG1428|consen 766 DVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLG--------------------------------------------- 800 (3738)
T ss_pred ceeEEEEeccCceEEEEecCCcEEEecCCcccccC---------------------------------------------
Confidence 45799999999999999999999999999999888
Q ss_pred eeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecC
Q 026218 183 SSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRF 239 (241)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~ 239 (241)
.||......|++|..+++..|+||++|++|++++..||.||+||.+
T Consensus 801 -----------~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF 846 (3738)
T KOG1428|consen 801 -----------VGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAF 846 (3738)
T ss_pred -----------cCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccc
Confidence 5566678899999999999999999999999999999999999976
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.81 E-value=2.8e-19 Score=159.88 Aligned_cols=170 Identities=18% Similarity=0.170 Sum_probs=130.2
Q ss_pred cCceeEEEecCCcEEEcccCCC-CCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccc
Q 026218 9 EENEKMEECKETVVYMWGYLPG-TSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSY 85 (241)
Q Consensus 9 ~~~~~l~~t~~G~vy~wG~n~g-~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG 85 (241)
.+-|++++++.|+||++|.+.| .++.+. ..+.|+.++.+.+.++.+|+. +..|+++||++|.||+||.| .++|||
T Consensus 185 ~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisv-s~~HslvLT~~g~Vys~GlN-~~hqLG 262 (1267)
T KOG0783|consen 185 SKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISV-SHTHSLVLTKFGSVYSWGLN-GSHQLG 262 (1267)
T ss_pred hhceeeEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEe-ecceeEEEeecceEEEeecC-cccccC
Confidence 4567999999999999999874 444443 345666688888899999998 45599999999999999999 999999
Q ss_pred cCCC-CCcCCceeeCCC--CC-CCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCC
Q 026218 86 LTSG-KHGETPEPFPLP--TE-ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALP 161 (241)
Q Consensus 86 ~~~~-~~~~~p~~v~~~--~~-~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~ 161 (241)
+.+. .....|..|... .+ ..|+.||||..|++|.|+. .||+||.|. |||| +.+
T Consensus 263 ~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlG---i~~------------------ 319 (1267)
T KOG0783|consen 263 LSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLG---ISD------------------ 319 (1267)
T ss_pred CcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEecccC-ceec---CCC------------------
Confidence 9743 344556555322 12 3799999999999999954 699999996 4444 321
Q ss_pred CCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeec
Q 026218 162 TEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGR 238 (241)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~ 238 (241)
+......|+.+.. ....|..|+|-..-++++++++.+|++-.
T Consensus 320 ----------------------------------n~~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~~~ad 361 (1267)
T KOG0783|consen 320 ----------------------------------NISVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSIIAFAD 361 (1267)
T ss_pred ----------------------------------CCceeecchhhcc-cccceEEEEecCccEEEEecCCcEEEEec
Confidence 1224667765532 35689999999999999999999998754
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.68 E-value=7.1e-16 Score=143.70 Aligned_cols=91 Identities=23% Similarity=0.290 Sum_probs=81.6
Q ss_pred CCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEec
Q 026218 50 DSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWG 129 (241)
Q Consensus 50 ~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG 129 (241)
.++.+|+| |..|+++|.+|++||+||.| .+||||.++......|+.|.++.+..|++|++|.+|++++-.||.||+||
T Consensus 767 vkv~sVSC-G~~HtVlL~sd~~VfTFG~~-~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFG 844 (3738)
T KOG1428|consen 767 VKVSSVSC-GNFHTVLLASDRRVFTFGSN-CHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFG 844 (3738)
T ss_pred eeEEEEec-cCceEEEEecCCcEEEecCC-cccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEec
Confidence 34455665 23499999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccc
Q 026218 130 WRECVPSAKVTRD 142 (241)
Q Consensus 130 ~n~~gQlG~l~~~ 142 (241)
.-..|||++....
T Consensus 845 aF~KGQL~RP~~e 857 (3738)
T KOG1428|consen 845 AFGKGQLARPAGE 857 (3738)
T ss_pred cccCccccCcccc
Confidence 9999999987543
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.53 E-value=4.5e-15 Score=91.51 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=46.4
Q ss_pred CCCEEEeecCCCCCccc-cCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEE
Q 026218 69 SGKLITWGSADDEGQSY-LTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSV 119 (241)
Q Consensus 69 ~G~vy~wG~n~~~GqlG-~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~l 119 (241)
||+||+||.| .+|||| .........|++++.+...+|++|+||.+||+||
T Consensus 1 dG~vy~wG~n-~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSN-DYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEE-TTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECC-CCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999 999999 6677788899999999889999999999999997
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.44 E-value=1.4e-13 Score=84.73 Aligned_cols=30 Identities=40% Similarity=0.504 Sum_probs=27.6
Q ss_pred cceecceEeecCCCCcEEEEecCCCeeEEE
Q 026218 198 FFTLSPCLVTLNPGVKITKVAAGGRHTLIL 227 (241)
Q Consensus 198 ~~~~~P~~v~~~~~~~i~~Ia~G~~hs~al 227 (241)
.....|++|..+.+.+|++|+||.+|++||
T Consensus 22 ~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 22 KNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp SEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 368899999999999999999999999997
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.41 E-value=2.2e-13 Score=73.77 Aligned_cols=30 Identities=40% Similarity=0.615 Sum_probs=25.8
Q ss_pred eEEEecCCCeEEEEEcCCCEEEecCCCCCC
Q 026218 106 VVKAAAGWAHCVSVTEAGEVYTWGWRECVP 135 (241)
Q Consensus 106 i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQ 135 (241)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999975
No 12
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.3e-13 Score=124.43 Aligned_cols=141 Identities=23% Similarity=0.267 Sum_probs=111.4
Q ss_pred ceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEE
Q 026218 41 PIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVT 120 (241)
Q Consensus 41 p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt 120 (241)
|+.+.++...++.++.|| ..|+++++..|++|.||.| .+||+|.+.......|.+++.+.+.+..+|+||.+||++++
T Consensus 5 ~~~~~~l~~k~~lq~~cG-n~hclal~~~g~~~~wg~~-~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCG-NNHCLALSCAGELFVWGMN-NNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALS 82 (850)
T ss_pred hHHHHHHhhhhhhhhccc-cHHHHhhhccCCeeeccCC-ccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhh
Confidence 445555556677888884 4599999999999999999 99999998544444499999999999999999999998877
Q ss_pred c-------CCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCceeeeeceeeeccCCCCCCC
Q 026218 121 E-------AGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPA 193 (241)
Q Consensus 121 ~-------~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (241)
. +|.++++|....+|+|+-.
T Consensus 83 ~~~~~lt~e~~~fs~Ga~~~~q~~h~~----------------------------------------------------- 109 (850)
T KOG0941|consen 83 SHTVLLTDEGKVFSFGAGSTGQLGHSL----------------------------------------------------- 109 (850)
T ss_pred hchhhcchhccccccCCcccccccccc-----------------------------------------------------
Confidence 7 9999999999998888411
Q ss_pred CCCccceecceEeecCCCCcEEEEecCCCeeEEEe-cCCcEEEeecC
Q 026218 194 SGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILS-GYRKYEAIGRF 239 (241)
Q Consensus 194 ~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt-~~G~vy~wG~~ 239 (241)
......|..+..+-+..+.+|+||..|+++.- .-|++|.+|..
T Consensus 110 ---~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~ 153 (850)
T KOG0941|consen 110 ---TENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKG 153 (850)
T ss_pred ---cccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccC
Confidence 11334555555555678999999999988874 46888888764
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.16 E-value=5e-11 Score=64.49 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.1
Q ss_pred EEEEecCCCeeEEEecCCcEEEeecCC
Q 026218 214 ITKVAAGGRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 214 i~~Ia~G~~hs~alt~~G~vy~wG~~~ 240 (241)
|++|+||.+|+++|+++|+||+||+|.
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~ 27 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNN 27 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--T
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCc
Confidence 789999999999999999999999986
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.7e-10 Score=99.82 Aligned_cols=90 Identities=23% Similarity=0.336 Sum_probs=73.0
Q ss_pred CceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccC
Q 026218 94 TPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAG 173 (241)
Q Consensus 94 ~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 173 (241)
.|+.+..+...+|.+++||.+|+++++..|++|+||.|.+||+|+--
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~--------------------------------- 50 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRAL--------------------------------- 50 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhc---------------------------------
Confidence 35555555567899999999999999999999999999998887420
Q ss_pred ceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEec-------CCcEEEeecC
Q 026218 174 EEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSG-------YRKYEAIGRF 239 (241)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~-------~G~vy~wG~~ 239 (241)
...... |..++.+.+.+..+|+||..|+++++. +|.++++|..
T Consensus 51 ----------------------~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~~~fs~Ga~ 100 (850)
T KOG0941|consen 51 ----------------------YFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEGKVFSFGAG 100 (850)
T ss_pred ----------------------cCCCCC-CccchhhcCCcHHHHhcCCCcchhhhhchhhcchhccccccCCc
Confidence 001233 888999999999999999999888876 9999998863
No 15
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.26 E-value=2.8 Score=34.85 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=59.3
Q ss_pred eEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEec-CCC-eEEEEeCCCCEEEeecCCCCCccccCCCC
Q 026218 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGG-GCG-FALATSESGKLITWGSADDEGQSYLTSGK 90 (241)
Q Consensus 13 ~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~-~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~~~~ 90 (241)
.++...||.||.=++..+..+.-.+. .-+++.+..+ ++. |.+++..||..|.+-.....+.++ .
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~----------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~d--p-- 131 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPA----------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLD--P-- 131 (353)
T ss_pred ccccCCCCceEEecCccccceecCCC----------CCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEec--C--
Confidence 67888999999877766555443221 1122233321 222 999999999999985541111221 1
Q ss_pred CcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCC
Q 026218 91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 91 ~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~ 133 (241)
.....+..+++ .+.+-+.--+++++..|+||.-|.+-+
T Consensus 132 kt~evt~f~lp-----~~~a~~nlet~vfD~~G~lWFt~q~G~ 169 (353)
T COG4257 132 KTLEVTRFPLP-----LEHADANLETAVFDPWGNLWFTGQIGA 169 (353)
T ss_pred cccceEEeecc-----cccCCCcccceeeCCCccEEEeecccc
Confidence 11222333332 222334457889999999999988643
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=90.84 E-value=8 Score=31.71 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=17.1
Q ss_pred EecCCCeEEEEEcCCCEEEecCCC
Q 026218 109 AAAGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 109 ia~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
+.--..|-+.-+.+|+|++|-...
T Consensus 132 lhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 132 LHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred ecCCcceEEeecCCCcEEEEEccC
Confidence 334455777778899999996543
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=90.29 E-value=7.3 Score=35.59 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=48.9
Q ss_pred CceeEEecCCCeEEEEeCCCCEEE-eecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEe
Q 026218 51 SWKDVCGGGCGFALATSESGKLIT-WGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (241)
Q Consensus 51 ~i~~v~~~~~~h~~~lt~~G~vy~-wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~w 128 (241)
.+.+|+++-.+-..+++.+|.||. -|-. +..+.|..= ..+..|+ ... .++.|+.|..-.-|||.+|++|.=
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVs-RqNp~GdsW-kdI~tP~--~a~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVS-RQNPEGDSW-KDIVTPR--QAL---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEeccc-ccCCCCchh-hhccCcc--ccc---ceEEEEeccceEEEEecCCcEEEE
Confidence 466788865468899999999754 4655 555555321 1233333 222 299999999999999999999864
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=87.92 E-value=7.3 Score=35.58 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=20.4
Q ss_pred EEEEecCCCeeEEEecCCcEEE
Q 026218 214 ITKVAAGGRHTLILSGYRKYEA 235 (241)
Q Consensus 214 i~~Ia~G~~hs~alt~~G~vy~ 235 (241)
++.|+.|....-+||.+|.+|.
T Consensus 277 ~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 277 PVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred eEEEEeccceEEEEecCCcEEE
Confidence 8999999999999999999985
No 19
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=86.89 E-value=0.92 Score=44.75 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCceeeeecee
Q 026218 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKT 182 (241)
Q Consensus 103 ~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (241)
..+++.|.+-++.-+||..+|++|.|-|...--|- ++.+.
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEgld--------------------dplai-------------------- 412 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLD--------------------DPLAI-------------------- 412 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCC--------------------Chhhc--------------------
Confidence 46788999999999999999999999998763111 00000
Q ss_pred eeccCCCCCCCCCCccceecceE-eecCCCCcEEEEecCCCeeEEEecCCcEEEe
Q 026218 183 SSAREESENPASGDEFFTLSPCL-VTLNPGVKITKVAAGGRHTLILSGYRKYEAI 236 (241)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~P~~-v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~w 236 (241)
......|.- .-.+.+.+|++.++..-..-++|++|+|-+|
T Consensus 413 --------------~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 413 --------------NKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred --------------ccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 001222221 2235678999999999889999999999988
No 20
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=86.77 E-value=1.6 Score=23.72 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=22.1
Q ss_pred CcEEEEecCC-CeeEEEecCCcEEEe
Q 026218 212 VKITKVAAGG-RHTLILSGYRKYEAI 236 (241)
Q Consensus 212 ~~i~~Ia~G~-~hs~alt~~G~vy~w 236 (241)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3799999999 899999999999963
No 21
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=85.19 E-value=1.8 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.9
Q ss_pred CCeEEEecCC-CeEEEEEcCCCEEEe
Q 026218 104 ASVVKAAAGW-AHCVSVTEAGEVYTW 128 (241)
Q Consensus 104 ~~i~~ia~G~-~hs~~lt~~G~vy~w 128 (241)
..+++|++|. +...+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4699999999 888999999999963
No 22
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.08 E-value=3.9 Score=32.83 Aligned_cols=70 Identities=10% Similarity=0.210 Sum_probs=39.3
Q ss_pred cCceeEEEecCCcEEEcccCCCCCCCCCCcccceeeee-----cCCCCceeEEecCCCeEEEEeCCCCEEEeecC
Q 026218 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARL-----CGGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (241)
Q Consensus 9 ~~~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~-----~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n 78 (241)
.+.+-|+||.+|.+|+|=-.............|..-.. .....|+.+.....|.-++..++|+.|.|-.+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 34558999999999999755432222211111111100 12344554444345566666777899998665
No 23
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=82.86 E-value=10 Score=39.08 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=48.4
Q ss_pred eeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCC-CCCeEEEecCCCeE-EEEEc
Q 026218 44 ARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPT-EASVVKAAAGWAHC-VSVTE 121 (241)
Q Consensus 44 ~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~-~~~i~~ia~G~~hs-~~lt~ 121 (241)
++-++...|+.++.++..+.++|+++|+|-+.=.- | .|++++... ...|+.|++=..|. +|||.
T Consensus 697 l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k~---g-----------~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~ 762 (1774)
T PF11725_consen 697 LEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQKP---G-----------RPVPLSRPGLSGEIKDLALDEKQNLYALTS 762 (1774)
T ss_pred ccCCCcCcceeEEEEcCCceEEeccCCccccccCC---C-----------CCccCCCCCCCcchhheeeccccceeEecC
Confidence 33344667777888777799999999988655311 1 144433221 35799999988866 58899
Q ss_pred CCCEEEe
Q 026218 122 AGEVYTW 128 (241)
Q Consensus 122 ~G~vy~w 128 (241)
+|+||.-
T Consensus 763 ~G~Lf~~ 769 (1774)
T PF11725_consen 763 TGELFRL 769 (1774)
T ss_pred CCceeec
Confidence 9999964
No 24
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.95 E-value=2.1 Score=34.33 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=26.0
Q ss_pred CCCeEEEecCCCeEEEEEcCCCEEEecCCC
Q 026218 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 103 ~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
+.+++.+.|-..+-+|||++|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 457889999999999999999999996543
No 25
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=76.66 E-value=8.7 Score=32.67 Aligned_cols=56 Identities=14% Similarity=0.292 Sum_probs=38.7
Q ss_pred ecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeec
Q 026218 17 CKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGS 77 (241)
Q Consensus 17 t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~ 77 (241)
...|+||+|-... ..+...++.........|++.+..-++ ..++++++|.||.|-.
T Consensus 326 nq~g~v~vwdL~~-----~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 326 NQSGKVYVWDLDN-----NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cCCCcEEEEECCC-----CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 5789999997432 222245566655666777777764444 7788899999999964
No 26
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.63 E-value=34 Score=30.18 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=19.1
Q ss_pred cEEEEecCCCeeEEE--ecCCcEEEeec
Q 026218 213 KITKVAAGGRHTLIL--SGYRKYEAIGR 238 (241)
Q Consensus 213 ~i~~Ia~G~~hs~al--t~~G~vy~wG~ 238 (241)
-|.+...|.+-.++. ++|++||.|=|
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEc
Confidence 466777777766666 57899999965
No 27
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=76.41 E-value=2.8 Score=23.51 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=16.3
Q ss_pred CeEEEEEcCCCEEEecCCC
Q 026218 114 AHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 114 ~hs~~lt~~G~vy~wG~n~ 132 (241)
-+.++++.+|.||+.|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3789999999999999754
No 28
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=75.41 E-value=9.4 Score=19.70 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=20.8
Q ss_pred CCCeEEEecCCCeEEEEEcCCCEEE
Q 026218 103 EASVVKAAAGWAHCVSVTEAGEVYT 127 (241)
Q Consensus 103 ~~~i~~ia~G~~hs~~lt~~G~vy~ 127 (241)
++.|..|++|....++.|+.+-|-.
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3579999999999999999886543
No 29
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=72.07 E-value=8.1 Score=38.68 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=45.5
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccC--CCCCcCCcee-eCCCCCCCeEEEecCCCeEEEEEcCCCEEEe
Q 026218 62 FALATSESGKLITWGSADDEGQSYLT--SGKHGETPEP-FPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~--~~~~~~~p~~-v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~w 128 (241)
..+||..+|++|.|-.. +.--|-.. ......-|.. .--+.+.+|+.+++..-..-++|++|+|-+|
T Consensus 385 el~AlhrkGelYqWaWd-ESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 385 ELLALHRKGELYQWAWD-ESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred HHHHHhhCCceeeeecc-cccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 67889999999999887 33222111 0111222322 1223478999999999999999999999999
No 30
>PRK05560 DNA gyrase subunit A; Validated
Probab=62.57 E-value=1.6e+02 Score=28.78 Aligned_cols=114 Identities=10% Similarity=-0.053 Sum_probs=58.1
Q ss_pred CceeEEEecCCcEEEcccCCC--CCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCcccc
Q 026218 10 ENEKMEECKETVVYMWGYLPG--TSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYL 86 (241)
Q Consensus 10 ~~~~l~~t~~G~vy~wG~n~g--~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~ 86 (241)
+...+.++.+|.|-.--...- +.... ....-.++..+..+..+...... +.+++|+.|++|..-.. ..-..+.
T Consensus 498 E~v~vllS~~GyIKri~~~~~~~~~~~~---~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~-~iP~~~~ 573 (805)
T PRK05560 498 EDVVVTLTHGGYIKRTPLDEYRAQRRGG---KGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVY-EIPEASR 573 (805)
T ss_pred CCEEEEEeCCCEEEEcchhhhhhhcccC---CCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhh-hCcCCCc
Confidence 344678888887765532110 00000 00111222233444443332223 78999999999999665 3322211
Q ss_pred CCCCCcCCceeeCCCCCCCeEEEecCC-----CeEEEEEcCCCEEEe
Q 026218 87 TSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSVTEAGEVYTW 128 (241)
Q Consensus 87 ~~~~~~~~p~~v~~~~~~~i~~ia~G~-----~hs~~lt~~G~vy~w 128 (241)
. ..-......+.+..+++|+.+.+-. ...+++|++|.+.--
T Consensus 574 ~-~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi 619 (805)
T PRK05560 574 T-ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKT 619 (805)
T ss_pred C-CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEE
Confidence 0 0001111234455677888877754 346778888866544
No 31
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=62.34 E-value=7.1 Score=22.70 Aligned_cols=17 Identities=18% Similarity=0.565 Sum_probs=12.0
Q ss_pred CCeEEEEEcCCCEEEec
Q 026218 113 WAHCVSVTEAGEVYTWG 129 (241)
Q Consensus 113 ~~hs~~lt~~G~vy~wG 129 (241)
..|++++..+++||++|
T Consensus 3 ~~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFG 19 (49)
T ss_dssp BS-EEEEE-TTEEEEE-
T ss_pred ceEEEEEEeCCeEEEEC
Confidence 36888888889999998
No 32
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=62.02 E-value=22 Score=30.39 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=26.5
Q ss_pred ecceEeecCCCCcEEEEecCCC--eeEEEecCCcEEEeecC
Q 026218 201 LSPCLVTLNPGVKITKVAAGGR--HTLILSGYRKYEAIGRF 239 (241)
Q Consensus 201 ~~P~~v~~~~~~~i~~Ia~G~~--hs~alt~~G~vy~wG~~ 239 (241)
..|++.....+..|.|.+-... ..++++++|.||.|-+.
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 3455555556677888766554 44556899999999764
No 33
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.63 E-value=1.4e+02 Score=30.46 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=34.8
Q ss_pred EEEecCCcEEEcccCCCCCCCCCCccccee--eeecCCCCceeEEecCCCeEEEEeCCCCEEEeecC
Q 026218 14 MEECKETVVYMWGYLPGTSPEKSPILSPIP--ARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (241)
Q Consensus 14 l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~--~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n 78 (241)
.=+|-|.++|.|=++++..-..-+...-+. |.+.....-+-|..+ .|.++|..-=+|+..|-.
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I--qhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI--QHLLVVATPVEIVILGVS 157 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh--heeEEecccceEEEEEEE
Confidence 457999999999988633222211111111 111111111122222 299999999999998865
No 34
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=61.07 E-value=1.1e+02 Score=26.34 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=12.8
Q ss_pred CeeEEEecCCcEEEe
Q 026218 222 RHTLILSGYRKYEAI 236 (241)
Q Consensus 222 ~hs~alt~~G~vy~w 236 (241)
++.++.+.+|+||+|
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 568888999999986
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=60.88 E-value=95 Score=25.68 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=38.6
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCe--EEEEEcCCCEEEecCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAH--CVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h--s~~lt~~G~vy~wG~n~ 132 (241)
|.+.-+.+|.|+.|-.. .. ...-.++|-. ...|.+++...+- .++.++.|+.|+|-.-.
T Consensus 138 eLis~dqsg~irvWDl~-~~----------~c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLG-EN----------SCTHELIPED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred eEEeecCCCcEEEEEcc-CC----------ccccccCCCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 77888899999999765 11 1111222222 3557777776654 46778899999996543
No 36
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=57.02 E-value=2e+02 Score=28.18 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=44.1
Q ss_pred eEEEEeCCCC-EEEeecCCCCCccccCC-CCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCC--EEEecCCCC
Q 026218 62 FALATSESGK-LITWGSADDEGQSYLTS-GKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGE--VYTWGWREC 133 (241)
Q Consensus 62 h~~~lt~~G~-vy~wG~n~~~GqlG~~~-~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~--vy~wG~n~~ 133 (241)
..++++.+|+ |+++|++ |-.-.-. ......|..+.. .+..|..|+|-..|-+.-++++. +|.++....
T Consensus 17 t~i~~d~~gefi~tcgsd---g~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSD---GDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred EEEEEcCCCCEEEEecCC---CceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 4566677765 6666666 2221111 122355766664 37789999999999999999886 577776655
No 37
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=56.85 E-value=1.9e+02 Score=27.91 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=63.0
Q ss_pred ceeEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCccccCCC
Q 026218 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSG 89 (241)
Q Consensus 11 ~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~~~ 89 (241)
...+.+|++|-|-.---.. ..+.-+++..+..+..+...... +.+++|+.|++|.+-.. ..- .|.+..
T Consensus 495 ~v~VilTk~G~IKr~~~~~---------~~~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~-eIP-~GR~aG 563 (735)
T TIGR01062 495 PVTIILSKMGWVRSAKGHD---------IDLSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPD-NLP-SARGQG 563 (735)
T ss_pred ceEEEEecCCEEEeccccc---------cchhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhH-hcC-cCccCC
Confidence 3467788888665422110 11223344455556555443333 78999999999999776 432 122111
Q ss_pred CCcCCceeeCCCCCCCeEEEecCCC--eEEEEEcCCCEEEecCCCC
Q 026218 90 KHGETPEPFPLPTEASVVKAAAGWA--HCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 90 ~~~~~p~~v~~~~~~~i~~ia~G~~--hs~~lt~~G~vy~wG~n~~ 133 (241)
...-..+.+..+..|+.+.+... +-+++|+.|.++-.-.+++
T Consensus 564 --gpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~ 607 (735)
T TIGR01062 564 --EPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDL 607 (735)
T ss_pred --ceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhc
Confidence 11112244556778888877653 4678888887776644443
No 38
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=56.63 E-value=1.5e+02 Score=26.59 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=31.0
Q ss_pred EEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecC
Q 026218 14 MEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSA 78 (241)
Q Consensus 14 l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n 78 (241)
++=|..|++|.|=-+.|.+..-.. .. -..|..+...+-+ |.+-=..||.|+.|=--
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~-aH--------YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLS-AH--------YQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHH-hh--------ccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 334588999999877665432110 00 1122222221222 66666788999999654
No 39
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=56.57 E-value=97 Score=25.56 Aligned_cols=16 Identities=19% Similarity=0.464 Sum_probs=12.6
Q ss_pred EEEecCCcEEEcccCC
Q 026218 14 MEECKETVVYMWGYLP 29 (241)
Q Consensus 14 l~~t~~G~vy~wG~n~ 29 (241)
|....+|.||.|-.+.
T Consensus 75 Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNE 90 (325)
T ss_pred eeeccCceEEEeeehh
Confidence 4456689999999886
No 40
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=56.03 E-value=57 Score=27.40 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=35.6
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEe
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~w 128 (241)
.+.+++..|.||.-|.+..+|.|--..... +..+.+. -+.-.-++.|-+|+||.-
T Consensus 151 et~vfD~~G~lWFt~q~G~yGrLdPa~~~i----~vfpaPq--------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 151 ETAVFDPWGNLWFTGQIGAYGRLDPARNVI----SVFPAPQ--------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred cceeeCCCccEEEeeccccceecCcccCce----eeeccCC--------CCCCcceEECCCCcEEEE
Confidence 788999999999999875667663221111 1112221 233456788999999975
No 41
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=54.62 E-value=1.4e+02 Score=26.01 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=35.9
Q ss_pred ceeEEecCCCeE-EEEeCCCC-EEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCC-eEEEEEcCCCEEEe
Q 026218 52 WKDVCGGGCGFA-LATSESGK-LITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA-HCVSVTEAGEVYTW 128 (241)
Q Consensus 52 i~~v~~~~~~h~-~~lt~~G~-vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~-hs~~lt~~G~vy~w 128 (241)
+..|..++.-|. ++.+.||+ +|..+. .|.+ ..+.+.....|..|..|.. +.++++.||+...-
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~v-----------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANR---DGTV-----------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEET---TSEE-----------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcC---CCeE-----------EEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 445555332265 56788887 777643 2443 3445555566778888876 78999999985544
Q ss_pred c
Q 026218 129 G 129 (241)
Q Consensus 129 G 129 (241)
+
T Consensus 95 ~ 95 (369)
T PF02239_consen 95 A 95 (369)
T ss_dssp E
T ss_pred E
Confidence 4
No 42
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=52.88 E-value=24 Score=17.98 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=14.3
Q ss_pred eEEEEEcCCCEEEecCCC
Q 026218 115 HCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 115 hs~~lt~~G~vy~wG~n~ 132 (241)
|.++++.+|+||+.=.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 678899999999876543
No 43
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=52.26 E-value=2.4e+02 Score=27.60 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=39.4
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecC-----CCeEEEEEcCCCEEEecCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG-----WAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~hs~~lt~~G~vy~wG~n~ 132 (241)
+.+++|++|++|..-.. ..-..+.. ..-......+++..+++|+.+.+- ...-+++|++|.+.-.-.+.
T Consensus 548 ~LllfTs~Grv~~l~~~-~IP~~~r~-~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~ 621 (800)
T TIGR01063 548 YLLFFTNRGKVYWLKVY-QIPEASRT-AKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTE 621 (800)
T ss_pred eEEEEeCCCcEEEEEhh-hCcCCCcC-CCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHH
Confidence 78999999999999443 22222110 001111123455567788877662 12467788888766554333
No 44
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=52.05 E-value=1.1e+02 Score=24.53 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=48.2
Q ss_pred eEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEec-CCCeEEEEeCCCC-EEEeecCCCCCccccCCC-
Q 026218 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGG-GCGFALATSESGK-LITWGSADDEGQSYLTSG- 89 (241)
Q Consensus 13 ~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~-~~~h~~~lt~~G~-vy~wG~n~~~GqlG~~~~- 89 (241)
.++++.+|.+|.=-........... .....+....++..+... ..-..++++.+|+ ||.--.. .+++-.-..
T Consensus 90 D~~vd~~G~ly~t~~~~~~~~~~~~---g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~--~~~i~~~~~~ 164 (246)
T PF08450_consen 90 DVAVDPDGNLYVTDSGGGGASGIDP---GSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSF--NGRIWRFDLD 164 (246)
T ss_dssp EEEE-TTS-EEEEEECCBCTTCGGS---EEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETT--TTEEEEEEEE
T ss_pred eEEEcCCCCEEEEecCCCccccccc---cceEEECCCCeEEEEecCcccccceEECCcchheeecccc--cceeEEEecc
Confidence 6889999998885543322211110 333334333333333331 2226788999987 4443333 233211000
Q ss_pred --CC-cCCceeeCCCCCCCeEEEec--CCCeEEEEEcCCCEEEecC
Q 026218 90 --KH-GETPEPFPLPTEASVVKAAA--GWAHCVSVTEAGEVYTWGW 130 (241)
Q Consensus 90 --~~-~~~p~~v~~~~~~~i~~ia~--G~~hs~~lt~~G~vy~wG~ 130 (241)
.. ...++. +..+.- |.--.++++.+|+||+.-.
T Consensus 165 ~~~~~~~~~~~--------~~~~~~~~g~pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 165 ADGGELSNRRV--------FIDFPGGPGYPDGLAVDSDGNLWVADW 202 (246)
T ss_dssp TTTCCEEEEEE--------EEE-SSSSCEEEEEEEBTTS-EEEEEE
T ss_pred ccccceeeeee--------EEEcCCCCcCCCcceEcCCCCEEEEEc
Confidence 00 001111 112222 3356789999999999743
No 45
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.97 E-value=1.9e+02 Score=27.79 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=19.2
Q ss_pred CCCeEEEe-----cCCCeEEEEEcCCCEEEec
Q 026218 103 EASVVKAA-----AGWAHCVSVTEAGEVYTWG 129 (241)
Q Consensus 103 ~~~i~~ia-----~G~~hs~~lt~~G~vy~wG 129 (241)
...|.+|. ....|-++||+|+.+-.+-
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 34577764 4478999999999765443
No 46
>PRK05560 DNA gyrase subunit A; Validated
Probab=48.63 E-value=2.7e+02 Score=27.22 Aligned_cols=111 Identities=10% Similarity=0.037 Sum_probs=57.8
Q ss_pred eEEEecCCcEEEcccCCC----CCCCCCCcccceeeeecCCCCceeEEecC---C-CeEEEEeCCCCEEEeecCCCCCcc
Q 026218 13 KMEECKETVVYMWGYLPG----TSPEKSPILSPIPARLCGGDSWKDVCGGG---C-GFALATSESGKLITWGSADDEGQS 84 (241)
Q Consensus 13 ~l~~t~~G~vy~wG~n~g----~~~~~~~~~~p~~~~~~~~~~i~~v~~~~---~-~h~~~lt~~G~vy~wG~n~~~Gql 84 (241)
-+++|+.|++|..=...- ....+.+. ...+++..+.+|..+.... . ...+++|.+|.+.---.. .+-..
T Consensus 551 LllfTs~Grv~~l~v~~iP~~~~~~~G~~i--~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~-~~~~~ 627 (805)
T PRK05560 551 LLFFTNRGRVYRLKVYEIPEASRTARGRPI--VNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS-EFSNI 627 (805)
T ss_pred EEEEecCCeEEEEEhhhCcCCCcCCCCeEH--HHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH-Hhhhc
Confidence 678899999999864421 01111111 1123334455666555533 1 157888999976655433 12110
Q ss_pred ccCCCCCcCCceeeCCCCCCCeEEEe--cCCCeEEEEEcCCCEEEecCCC
Q 026218 85 YLTSGKHGETPEPFPLPTEASVVKAA--AGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 85 G~~~~~~~~~p~~v~~~~~~~i~~ia--~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
. ..-...+.+..+..++.+. ....+.+++|++|++|.+-..+
T Consensus 628 ~------r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~e 671 (805)
T PRK05560 628 R------SNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESD 671 (805)
T ss_pred c------cCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhh
Confidence 0 0011122222334454433 3345789999999999885544
No 47
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=48.46 E-value=15 Score=24.22 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=10.0
Q ss_pred cE-EEcccCCCCCC
Q 026218 21 VV-YMWGYLPGTSP 33 (241)
Q Consensus 21 ~v-y~wG~n~g~~~ 33 (241)
.| |.||+|.+...
T Consensus 57 sv~waWGSNKnk~~ 70 (84)
T PF07312_consen 57 SVYWAWGSNKNKQA 70 (84)
T ss_pred ceeeeeccCCCCCC
Confidence 35 99999987654
No 48
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=48.39 E-value=66 Score=21.41 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=24.8
Q ss_pred eecceEeecCCCCcEEEEecC-CCeeEEEecCCcEEEee
Q 026218 200 TLSPCLVTLNPGVKITKVAAG-GRHTLILSGYRKYEAIG 237 (241)
Q Consensus 200 ~~~P~~v~~~~~~~i~~Ia~G-~~hs~alt~~G~vy~wG 237 (241)
...|..+.. +..=..|+|. ....++|++||.+|+=+
T Consensus 6 ~t~Pa~i~~--~~tS~~Vs~~~~gs~ValS~dg~l~G~a 42 (81)
T PF03785_consen 6 VTHPASINL--GQTSISVSCDVPGSYVALSQDGDLYGKA 42 (81)
T ss_dssp EE--SEEET--T-SEEEEEESSTT-EEEEEETTEEEEEE
T ss_pred Ecccccccc--cccEEEEEecCCCcEEEEecCCEEEEEE
Confidence 345655653 4456689999 88999999999999754
No 49
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=48.35 E-value=2.7e+02 Score=27.18 Aligned_cols=112 Identities=9% Similarity=0.064 Sum_probs=57.4
Q ss_pred eEEEecCCcEEEcccCC----CCCCCCCCcccceeeeecCCCCceeEEecC---CC-eEEEEeCCCCEEEeecCCCCCcc
Q 026218 13 KMEECKETVVYMWGYLP----GTSPEKSPILSPIPARLCGGDSWKDVCGGG---CG-FALATSESGKLITWGSADDEGQS 84 (241)
Q Consensus 13 ~l~~t~~G~vy~wG~n~----g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~---~~-h~~~lt~~G~vy~wG~n~~~Gql 84 (241)
-+++|+.|++|..=... +....+.+. ...+++..+.++..+.+.. .. ..+++|.+|.+--.-.+ .+-..
T Consensus 549 LllfTs~Grv~~l~~~~IP~~~r~~~G~~i--~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~-~~~~~ 625 (800)
T TIGR01063 549 LLFFTNRGKVYWLKVYQIPEASRTAKGKPI--VNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLT-EFSNI 625 (800)
T ss_pred EEEEeCCCcEEEEEhhhCcCCCcCCCCcCH--HHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhH-Hhhhh
Confidence 67889999999983221 111111111 1123344555665555421 11 57888888877766444 22110
Q ss_pred ccCCCCCcCCceeeCCCCCCCeEEE--ecCCCeEEEEEcCCCEEEecCCCC
Q 026218 85 YLTSGKHGETPEPFPLPTEASVVKA--AAGWAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 85 G~~~~~~~~~p~~v~~~~~~~i~~i--a~G~~hs~~lt~~G~vy~wG~n~~ 133 (241)
. ..--..+.+..+..++.+ +....+.+++|++|++|.+-..+-
T Consensus 626 ~------r~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eI 670 (800)
T TIGR01063 626 R------SNGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDV 670 (800)
T ss_pred c------cCCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhc
Confidence 0 000011112223334443 233457899999999998865543
No 50
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=46.85 E-value=1.7e+02 Score=24.26 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCeEEEEEcCCCEEEecCCCC
Q 026218 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 103 ~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~ 133 (241)
+.+|-.++.-..|-+.- .+|+||.|=+|+.
T Consensus 62 dgpiy~~~f~d~~Lls~-gdG~V~gw~W~E~ 91 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFLLSG-GDGLVYGWEWNEE 91 (325)
T ss_pred CCCeeeeeeehhheeec-cCceEEEeeehhh
Confidence 45677777776665544 4699999999987
No 51
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=45.62 E-value=1.6e+02 Score=25.21 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=12.2
Q ss_pred CeEEEEEcCCCEEEe
Q 026218 114 AHCVSVTEAGEVYTW 128 (241)
Q Consensus 114 ~hs~~lt~~G~vy~w 128 (241)
.+.++.+.+|+||+|
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 467788889999986
No 52
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=44.17 E-value=28 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=19.5
Q ss_pred CCCCcEEEEecCCCeeEEEecCCc
Q 026218 209 NPGVKITKVAAGGRHTLILSGYRK 232 (241)
Q Consensus 209 ~~~~~i~~Ia~G~~hs~alt~~G~ 232 (241)
+++.+|+++..|..++++.+++|.
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G~ 32 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDGG 32 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-E
T ss_pred CCCCEEEEEEEcCCEEEEEeCCCc
Confidence 346789999999999999999983
No 53
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=43.32 E-value=2.2e+02 Score=27.55 Aligned_cols=119 Identities=18% Similarity=0.108 Sum_probs=63.0
Q ss_pred ceeEEEecCCcEEEcccCCCCCCCCCCccccee--eeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCccccC
Q 026218 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIP--ARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLT 87 (241)
Q Consensus 11 ~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~--~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~ 87 (241)
..-+++|++|++|.+-..+- +.....-.|.. +.+..+..+..+...... +.+++|+.|..+-.-.. .+-....+
T Consensus 537 d~LllfTs~Gr~yrf~v~eI--P~GR~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~ls-e~~~~~Ra 613 (735)
T TIGR01062 537 QKVVFIDSTGRSYALDPDNL--PSARGQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFN-DLIARNKA 613 (735)
T ss_pred CEEEEEECCCeEEEEEhHhc--CcCccCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhH-hccccCcC
Confidence 34788999999999975431 11111122222 233456667666665443 57888888876666544 22111000
Q ss_pred CCCCcCCceeeCCCCCCCeEE--EecCC-CeEEEEEcCCCEEEecCCCCCCCCC
Q 026218 88 SGKHGETPEPFPLPTEASVVK--AAAGW-AHCVSVTEAGEVYTWGWRECVPSAK 138 (241)
Q Consensus 88 ~~~~~~~p~~v~~~~~~~i~~--ia~G~-~hs~~lt~~G~vy~wG~n~~gQlG~ 138 (241)
.. ..+.+..+..++. ...+. ++.+++|++|++..+-.++.-++++
T Consensus 614 -GK-----gvi~Lk~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 614 -GK-----ALINLPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred -Ce-----EEEEeCCCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 00 0001111222322 22333 3678899999999987776544443
No 54
>PF13854 Kelch_5: Kelch motif
Probab=42.71 E-value=28 Score=19.57 Aligned_cols=16 Identities=25% Similarity=0.740 Sum_probs=12.4
Q ss_pred CCeEEEEEcCCCEEEec
Q 026218 113 WAHCVSVTEAGEVYTWG 129 (241)
Q Consensus 113 ~~hs~~lt~~G~vy~wG 129 (241)
..|++++. ++++|.+|
T Consensus 6 ~~hs~~~~-~~~iyi~G 21 (42)
T PF13854_consen 6 YGHSAVVV-GNNIYIFG 21 (42)
T ss_pred cceEEEEE-CCEEEEEc
Confidence 35777776 58999998
No 55
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=41.46 E-value=99 Score=25.87 Aligned_cols=60 Identities=28% Similarity=0.448 Sum_probs=33.3
Q ss_pred CCeEEEEeCCCCEEEeec-CCCCCccccC-----CCCCcCCceeeCCCCCCCeEEEecC--CCeEEEEEcCCCEEEecC
Q 026218 60 CGFALATSESGKLITWGS-ADDEGQSYLT-----SGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTWGW 130 (241)
Q Consensus 60 ~~h~~~lt~~G~vy~wG~-n~~~GqlG~~-----~~~~~~~p~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~vy~wG~ 130 (241)
.+|++++- ++++|.||- ||.+|.+-+- ....-..|+ |.-..-| +-||+++- .+..|.+|-
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~---------v~G~vPgaRDGHsAcV~-gn~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE---------VEGFVPGARDGHSACVW-GNQMYIFGG 147 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccc---------eeeecCCccCCceeeEE-CcEEEEecC
Confidence 45998665 568999975 5446665321 111111222 3322223 45888777 557888874
No 56
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=40.68 E-value=2.7e+02 Score=24.96 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=45.5
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCC--eEEEEEcCCCEEEecCCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--hs~~lt~~G~vy~wG~n~~ 133 (241)
|++++--||-+|+-|.- .|++-+=+......-..++. ...+|+.|+-+.+ .-+.-++|+.|..|-....
T Consensus 351 ts~~fHpDgLifgtgt~--d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTP--DGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred EEeeEcCCceEEeccCC--CceEEEEEcCCccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 88999999999999986 47775422222222222333 2457888888765 4455566888999987654
No 57
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=40.25 E-value=84 Score=28.18 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=30.0
Q ss_pred eEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecC
Q 026218 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (241)
Q Consensus 13 ~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n 78 (241)
-+++..+|+||.|-.+.. ..+. ++++=-+ =++.+++++-+|..++.|++
T Consensus 359 l~~~~~~GeV~v~nl~~~-----------~~~~-----rf~D~G~-v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 359 LLASGGTGEVYVWNLRQN-----------SCLH-----RFVDDGS-VHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred EEEEcCCceEEEEecCCc-----------ceEE-----EEeecCc-cceeeeeecCCCceEEeccC
Confidence 456667999999975421 1111 1111111 13468889999999999997
No 58
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=39.34 E-value=40 Score=16.46 Aligned_cols=14 Identities=7% Similarity=0.142 Sum_probs=10.5
Q ss_pred eEEEEEcCCCEEEe
Q 026218 115 HCVSVTEAGEVYTW 128 (241)
Q Consensus 115 hs~~lt~~G~vy~w 128 (241)
++++.+.+|+||.=
T Consensus 8 ~~i~~D~~G~lWig 21 (24)
T PF07494_consen 8 YSIYEDSDGNLWIG 21 (24)
T ss_dssp EEEEE-TTSCEEEE
T ss_pred EEEEEcCCcCEEEE
Confidence 67888899999863
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=38.76 E-value=2.3e+02 Score=23.57 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=37.5
Q ss_pred ecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCce
Q 026218 17 CKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPE 96 (241)
Q Consensus 17 t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~ 96 (241)
++++.|-.|-...+...+.. ..+. .++.......++.+.+..-+.|-.|-.+ .++.| +....|.
T Consensus 162 add~tVRLWD~rTgt~v~sL--~~~s--------~VtSlEvs~dG~ilTia~gssV~Fwdak-sf~~l-----Ks~k~P~ 225 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSL--EFNS--------PVTSLEVSQDGRILTIAYGSSVKFWDAK-SFGLL-----KSYKMPC 225 (334)
T ss_pred ccCCceEEEEeccCcEEEEE--ecCC--------CCcceeeccCCCEEEEecCceeEEeccc-cccce-----eeccCcc
Confidence 77888888875433222211 1111 2222222234578878888888889888 77776 2344455
Q ss_pred eeC
Q 026218 97 PFP 99 (241)
Q Consensus 97 ~v~ 99 (241)
.|.
T Consensus 226 nV~ 228 (334)
T KOG0278|consen 226 NVE 228 (334)
T ss_pred ccc
Confidence 443
No 60
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=37.14 E-value=92 Score=25.27 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=36.3
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCe--EEEEEcCCCEEEecCCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAH--CVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~h--s~~lt~~G~vy~wG~n~~ 133 (241)
-.++.+.+|.||.|=.| .+|++-- .+....+.-..-|..|..- -++-..+|+++.|-.-.+
T Consensus 72 ~~~vG~~dg~v~~~n~n-~~g~~~d----------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWN-LEGAHSD----------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred eEEeecccceEEEecCC-ccchHHH----------hhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 67889999999999999 8887621 1111111122334445552 333445788888854433
No 61
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=35.24 E-value=2.4e+02 Score=29.84 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=48.7
Q ss_pred CCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCC
Q 026218 50 DSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAG 123 (241)
Q Consensus 50 ~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G 123 (241)
-.|+.++.--.....|||.+|+||.--.-+ -|-+-.........++|.++.+.+|..+....+|.+.+.-++
T Consensus 744 G~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~--WQ~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 744 GEIKDLALDEKQNLYALTSTGELFRLPKEA--WQGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred cchhheeeccccceeEecCCCceeecCHHH--hhCcccCCccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 467888874332567799999999754321 110001112235678888888899999999999999888665
No 62
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.39 E-value=99 Score=30.73 Aligned_cols=36 Identities=3% Similarity=0.087 Sum_probs=25.2
Q ss_pred CeEEEe-cCCCeEEEEEc--CCCEEEecCCCCCCCCCcc
Q 026218 105 SVVKAA-AGWAHCVSVTE--AGEVYTWGWRECVPSAKVT 140 (241)
Q Consensus 105 ~i~~ia-~G~~hs~~lt~--~G~vy~wG~n~~gQlG~l~ 140 (241)
-|..++ |..+-.++|+. |+++++|.-|.--+||.+.
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 355554 66675666664 8999999999866666554
No 63
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=32.20 E-value=23 Score=31.18 Aligned_cols=19 Identities=16% Similarity=-0.066 Sum_probs=15.8
Q ss_pred eeEEEecCCcEEEeecCCC
Q 026218 223 HTLILSGYRKYEAIGRFLM 241 (241)
Q Consensus 223 hs~alt~~G~vy~wG~~~~ 241 (241)
++...+++|.||+||.+||
T Consensus 112 fsa~~~~~g~IyaRGaqD~ 130 (420)
T KOG2275|consen 112 FSAFKDEDGNIYARGAQDM 130 (420)
T ss_pred ccccccCCCcEEeccccch
Confidence 3445588999999999998
No 64
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=30.41 E-value=5.7e+02 Score=25.67 Aligned_cols=153 Identities=13% Similarity=-0.020 Sum_probs=0.0
Q ss_pred EEEecCCcEEEcccCCCCCCCCCCcccceeeeec----CCCCceeEEec----CCCeEEEEeCCCCEEEeecCCCCCccc
Q 026218 14 MEECKETVVYMWGYLPGTSPEKSPILSPIPARLC----GGDSWKDVCGG----GCGFALATSESGKLITWGSADDEGQSY 85 (241)
Q Consensus 14 l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~----~~~~i~~v~~~----~~~h~~~lt~~G~vy~wG~n~~~GqlG 85 (241)
|++|+.|+||.-=...-........-.|..--+. .+.+|..+... ...+.+++|.+|.|.-.=..
T Consensus 567 L~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~------- 639 (957)
T PRK13979 567 LIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLD------- 639 (957)
T ss_pred EEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehh-------
Q ss_pred cCCCCCcCCceeeCCCCCCCeEEEecCC-----CeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCC
Q 026218 86 LTSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSAL 160 (241)
Q Consensus 86 ~~~~~~~~~p~~v~~~~~~~i~~ia~G~-----~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~ 160 (241)
.-......-..+.+..+..++.+..-. .+.+++|++|.+.-|-.++--.+|+
T Consensus 640 -ef~~~r~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR---------------------- 696 (957)
T PRK13979 640 -KFVTNYTKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR---------------------- 696 (957)
T ss_pred -hccccccceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC----------------------
Q ss_pred CCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCC-------------------
Q 026218 161 PTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGG------------------- 221 (241)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~------------------- 221 (241)
...--+-+...++..|+.+..-.
T Consensus 697 --------------------------------------~a~GVkgI~L~~~D~Vv~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (957)
T PRK13979 697 --------------------------------------NIIGYQLFDLLPNDSIKKVDFCDNYEYKEFYVNINKKGIIKI 738 (957)
T ss_pred --------------------------------------CCcCeeeEeeCCCCEEEEEEEEhhhhhcchhhhcccccceee
Q ss_pred ----------------CeeEEEecCCcEE
Q 026218 222 ----------------RHTLILSGYRKYE 234 (241)
Q Consensus 222 ----------------~hs~alt~~G~vy 234 (241)
.+.++.|+.|++|
T Consensus 739 ~~~~~~~~~~i~~~T~d~Ll~FTn~Gkvy 767 (957)
T PRK13979 739 SDKDNKSSISVFTNSSKNLLIFSDEGKVY 767 (957)
T ss_pred cccccccccceeecCCceEEEEecCCeEE
No 65
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=30.18 E-value=52 Score=18.97 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=11.5
Q ss_pred eEEEEEcCCCEEEecCC
Q 026218 115 HCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 115 hs~~lt~~G~vy~wG~n 131 (241)
|+++ .-+++||+||=-
T Consensus 5 hs~~-~~~~kiyv~GG~ 20 (49)
T PF07646_consen 5 HSAV-VLDGKIYVFGGY 20 (49)
T ss_pred eEEE-EECCEEEEECCc
Confidence 5544 558999999843
No 66
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=29.86 E-value=1.2e+02 Score=19.20 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=21.3
Q ss_pred CCeEEEecCCCeEEEEEcCCCEEEecCCCC
Q 026218 104 ASVVKAAAGWAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 104 ~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~ 133 (241)
.+-+.+-+....+++||+.|.-|+|-.+..
T Consensus 25 ~P~~n~LsNg~y~~mvt~~G~GySw~~~~~ 54 (66)
T PF06204_consen 25 APWVNVLSNGSYGVMVTNSGSGYSWAKNSR 54 (66)
T ss_dssp S--EEEE-SSSEEEEEETTSBEEEEES-TT
T ss_pred CCEEEEeeCCcEEEEEcCCCceeecccccC
Confidence 346666666788999999999999977654
No 67
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=29.65 E-value=3.1e+02 Score=24.09 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=19.7
Q ss_pred eEEEecCCCe---EEEEEcCCCEEEecCCC
Q 026218 106 VVKAAAGWAH---CVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 106 i~~ia~G~~h---s~~lt~~G~vy~wG~n~ 132 (241)
++.+.+|.+| .+++..+|++.-|-.+.
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~ 191 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGNV 191 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCCe
Confidence 4456777776 77888889998886543
No 68
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.53 E-value=1.6e+02 Score=24.29 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=34.7
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcC-CCEEEec
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEA-GEVYTWG 129 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~-G~vy~wG 129 (241)
|.+-=++||.||.|-.- ..-|+ ..++......|.+++|-..---+++.. +.++.|=
T Consensus 241 hV~sgSEDG~Vy~wdLv-d~~~~-----------sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLV-DETQI-----------SKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred eEEeccCCceEEEEEec-cceee-----------eeeccCCceeEEeeecccCccceeEecCCceecee
Confidence 88888999999999876 22222 233333344477888876544444443 3466663
No 69
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=29.15 E-value=5.7e+02 Score=25.26 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=38.1
Q ss_pred EEeCCCCEEEeec-CCCCCccccC-CC-CCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEe
Q 026218 65 ATSESGKLITWGS-ADDEGQSYLT-SG-KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTW 128 (241)
Q Consensus 65 ~lt~~G~vy~wG~-n~~~GqlG~~-~~-~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~w 128 (241)
.|++.|-+|+.-. .+..|++-+- .. .....--.+.++..+.|+.|+|+....+++|+.|-+-+|
T Consensus 483 ~ls~~g~llAsp~s~sk~~sil~~~h~~w~s~seWtm~lP~~E~~~~V~~t~~~Vav~TS~~~lRvF 549 (933)
T KOG1274|consen 483 DLSEKGTLLASPESESKLGSILYRAHFSWDSHSEWTMILPLQESIEAVAATSGWVAVATSLGYLRVF 549 (933)
T ss_pred eccccceEEecccccCCcceEEEEcccCcccccceeeecCCCCceeEEEccCcEEEEEeccceEEEE
Confidence 4677787877722 1123443221 10 111111223344458899999999999999999976665
No 70
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=27.99 E-value=2.4e+02 Score=27.42 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=38.6
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
+.++.-...++|+|-.++ . -+.+-.+...+|.....=..|.++++.++.+|+|-...
T Consensus 87 ~~vy~A~g~~i~~~~rgk-~-------------i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~ 143 (910)
T KOG1539|consen 87 DYVYVASGNKIYAYARGK-H-------------IRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSS 143 (910)
T ss_pred ceEEEecCcEEEEEEccc-e-------------EEEEeccccceEEEEeeecceEEEEEccCcEEEEEecc
Confidence 666677777899987661 1 11122222345666666678999999999999996554
No 71
>PF13964 Kelch_6: Kelch motif
Probab=27.95 E-value=69 Score=18.43 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=12.6
Q ss_pred CeeEEEecCCcEEEeecCC
Q 026218 222 RHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 222 ~hs~alt~~G~vy~wG~~~ 240 (241)
.|+++. -+++||.+|-.+
T Consensus 4 ~~s~v~-~~~~iyv~GG~~ 21 (50)
T PF13964_consen 4 GHSAVV-VGGKIYVFGGYD 21 (50)
T ss_pred cCEEEE-ECCEEEEECCCC
Confidence 466655 467999999654
No 72
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=27.82 E-value=92 Score=16.99 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=13.4
Q ss_pred ecCCCeeEEEecCCcEEEee
Q 026218 218 AAGGRHTLILSGYRKYEAIG 237 (241)
Q Consensus 218 a~G~~hs~alt~~G~vy~wG 237 (241)
+....+.++.+.+|+||+.-
T Consensus 18 ~v~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEE
T ss_pred EEECCEEEEEcCCCEEEEEe
Confidence 34456778888888888763
No 73
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=26.88 E-value=57 Score=23.05 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=17.6
Q ss_pred CCeeEEEecCCcEEEeecCC
Q 026218 221 GRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 221 ~~hs~alt~~G~vy~wG~~~ 240 (241)
..|.+|.|.=|+||.|++..
T Consensus 79 ~~~~ia~tAFGdl~~w~e~~ 98 (109)
T PF08887_consen 79 NYIPIARTAFGDLYVWGENT 98 (109)
T ss_pred eEEEEEEcccccEEEEEcCC
Confidence 57999999999999999863
No 74
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=26.62 E-value=1.6e+02 Score=25.61 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=49.3
Q ss_pred eEEEecCCc-EEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCC
Q 026218 13 KMEECKETV-VYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKH 91 (241)
Q Consensus 13 ~l~~t~~G~-vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~ 91 (241)
.+..+.||+ +|+-+. ++ .-..+.+.....++.|..+..-+.++++.||+...-++. .-+++-.-+...
T Consensus 41 ~~~~s~Dgr~~yv~~r-dg---------~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~-~~~~v~v~D~~t 109 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANR-DG---------TVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY-EPGTVSVIDAET 109 (369)
T ss_dssp EEE-TT-SSEEEEEET-TS---------EEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE-ETTEEEEEETTT
T ss_pred EEEecCCCCEEEEEcC-CC---------eEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec-CCCceeEecccc
Confidence 566778776 777642 11 113444445556667777543399999999996666654 445554322111
Q ss_pred cCCceeeCCC------CCCCeEEEecCCC---eEEEEEcCCCEEEec
Q 026218 92 GETPEPFPLP------TEASVVKAAAGWA---HCVSVTEAGEVYTWG 129 (241)
Q Consensus 92 ~~~p~~v~~~------~~~~i~~ia~G~~---hs~~lt~~G~vy~wG 129 (241)
...-+.|+.. ...++..|.+-.. +.++|.+.|+||.--
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 1111112211 2334555543222 445566667777653
No 75
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=26.15 E-value=57 Score=19.66 Aligned_cols=15 Identities=13% Similarity=-0.053 Sum_probs=13.2
Q ss_pred ceeEEEecCCcEEEc
Q 026218 11 NEKMEECKETVVYMW 25 (241)
Q Consensus 11 ~~~l~~t~~G~vy~w 25 (241)
..+|.|+.||.||.+
T Consensus 5 ~~~~~I~~dG~v~pC 19 (64)
T PF13186_consen 5 WNSLYIDPDGDVYPC 19 (64)
T ss_pred CeEEEEeeCccEEeC
Confidence 347999999999998
No 76
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=24.51 E-value=1.2e+02 Score=19.79 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=19.1
Q ss_pred EEecCCCeEEEEE-cCCCEEEecCCC
Q 026218 108 KAAAGWAHCVSVT-EAGEVYTWGWRE 132 (241)
Q Consensus 108 ~ia~G~~hs~~lt-~~G~vy~wG~n~ 132 (241)
.+-|+...++++. .+|++|.|++.+
T Consensus 35 s~Lc~~~v~lvv~sp~gk~~~f~s~s 60 (77)
T cd00265 35 SVLCDAEVALIIFSSSGKLYEFSSPS 60 (77)
T ss_pred eeccCCceeEEEEcCCCceEEecCCC
Confidence 4568888887654 479999998764
No 77
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.47 E-value=3.8e+02 Score=27.63 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=36.3
Q ss_pred EEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecC-----CCeEEEEEcCCCEEEecCCC
Q 026218 63 ALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG-----WAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 63 ~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~hs~~lt~~G~vy~wG~n~ 132 (241)
-+-+|-|.+||.|-.+ ..+++-.-++. ...-..| ..++.-+| -.|.++|..-=+|+..|-..
T Consensus 92 RaWiTiDn~L~lWny~-~~~e~~~~d~~-shtIl~V------~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYE-SDNELAEYDGL-SHTILKV------GLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred ceEEEeCCeEEEEEcC-CCCccccccch-hhhheee------eeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 4568999999999988 55555221110 0001111 12222222 25999999999999988543
No 78
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=24.26 E-value=1.1e+02 Score=30.06 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=55.1
Q ss_pred eEEEecCCcEEEcccCCCCCCCCCCcccce--eeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecC--CCCCccccCC
Q 026218 13 KMEECKETVVYMWGYLPGTSPEKSPILSPI--PARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA--DDEGQSYLTS 88 (241)
Q Consensus 13 ~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~--~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n--~~~GqlG~~~ 88 (241)
-.-+|.|.+|+.|-.|+++.-+......-+ .+++.....-.-|..+ .|.+++...-+||..|-. +.-|.|-+-
T Consensus 95 rcWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i--~hlL~vAT~~e~~ilgvs~d~~T~Els~f- 171 (1263)
T COG5308 95 RCWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRI--SHLLFVATEKEVMILGVSKDTKTGELSLF- 171 (1263)
T ss_pred ceEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhh--hhhhhhhhhheeeEEEEEeccccceeEEE-
Confidence 466899999999999865443333222222 2222221122223332 299999888899998864 122333211
Q ss_pred CCCcCCceeeCCCCCCCeEEEecCCCe-EEEEEcCCCEEEecCCC
Q 026218 89 GKHGETPEPFPLPTEASVVKAAAGWAH-CVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 89 ~~~~~~p~~v~~~~~~~i~~ia~G~~h-s~~lt~~G~vy~wG~n~ 132 (241)
++--.+++ -|-+- +++-.++|++|.-|.++
T Consensus 172 ----nTgl~vsv----------qGinV~civs~e~GrIFf~g~~d 202 (1263)
T COG5308 172 ----NTGLVVSV----------QGINVRCIVSEEDGRIFFGGEND 202 (1263)
T ss_pred ----ecceEEec----------cCceeEEEEeccCCcEEEecCCC
Confidence 11111111 22332 33444569999988876
No 79
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=23.56 E-value=1.7e+02 Score=17.92 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.3
Q ss_pred CCCeEEEecCCCeEEEEEcCCCEEEe
Q 026218 103 EASVVKAAAGWAHCVSVTEAGEVYTW 128 (241)
Q Consensus 103 ~~~i~~ia~G~~hs~~lt~~G~vy~w 128 (241)
+.+++.+.+...-.++.+.+|+|--.
T Consensus 25 GsN~v~v~~~g~~VA~~ta~GkveeY 50 (59)
T PF05862_consen 25 GSNAVAVQVDGGIVAAVTANGKVEEY 50 (59)
T ss_pred CCceEEEeeCCCEEEEEecCCceeee
Confidence 45689999999888999999998543
No 80
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=23.26 E-value=5.7e+02 Score=23.20 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=31.6
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
+.++...+|+||.|--+ ..-.+ .. .++=-|=.--++|++-+|..++.|++.
T Consensus 358 ~l~~~~~~GeV~v~nl~-~~~~~-----------~r--------f~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLR-QNSCL-----------HR--------FVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred EEEEEcCCceEEEEecC-CcceE-----------EE--------EeecCccceeeeeecCCCceEEeccCc
Confidence 78888888999999776 22111 00 111111134567778889999999875
No 81
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=23.23 E-value=1.1e+02 Score=16.25 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=9.8
Q ss_pred eEEEEEcCCCEEE
Q 026218 115 HCVSVTEAGEVYT 127 (241)
Q Consensus 115 hs~~lt~~G~vy~ 127 (241)
+.-|++.+|+||.
T Consensus 2 ~VWav~~~G~v~~ 14 (32)
T PF06462_consen 2 QVWAVTSDGSVYF 14 (32)
T ss_pred eEEEEcCCCCEEE
Confidence 4567888888885
No 82
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=22.16 E-value=5.8e+02 Score=22.95 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=16.5
Q ss_pred CCeeEEEecCCcEEEeecC
Q 026218 221 GRHTLILSGYRKYEAIGRF 239 (241)
Q Consensus 221 ~~hs~alt~~G~vy~wG~~ 239 (241)
+.|.+++|-+|.||.||-+
T Consensus 233 SGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 233 SGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred CcceEEecCCCcEEEEcch
Confidence 5689999999999999964
No 83
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=21.35 E-value=5.2e+02 Score=25.08 Aligned_cols=67 Identities=10% Similarity=0.009 Sum_probs=42.5
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCC------eEEEEEcCCCEEEecC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA------HCVSVTEAGEVYTWGW 130 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~------hs~~lt~~G~vy~wG~ 130 (241)
+.+++|+.|++|.+-.. ..-..|... .-......+.+..+..|+.+.+-.. .-+++|++|.+.-.-.
T Consensus 544 ~IllfT~~Gkv~r~~~~-eIp~~gr~a-~Gv~Ivk~i~L~~~D~Iv~~~~v~~~~~~~~~ll~vT~~G~~KRt~l 616 (738)
T TIGR01061 544 QILIFTSLGNIINIPVH-KLADIRWKD-LGEHLSNKITFDENETIVFVGTMNEFDVDQPILVLASKLGMVKRIEL 616 (738)
T ss_pred EEEEEeCCCcEEEEEHH-HCcCCCCCC-CCcChhhcccCCCCCeEEEEEEeccccCCCcEEEEEecCCeEEEeEH
Confidence 79999999999999776 444433211 1112234455556677888776432 4788899997665533
No 84
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=20.66 E-value=70 Score=18.83 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=11.7
Q ss_pred EEecCCCeeEEE-ecCCcEEEe
Q 026218 216 KVAAGGRHTLIL-SGYRKYEAI 236 (241)
Q Consensus 216 ~Ia~G~~hs~al-t~~G~vy~w 236 (241)
+|+.|. ++.|+ .++|.|-.|
T Consensus 30 qVasGs-fs~a~N~dnG~vRiW 50 (51)
T PF09081_consen 30 QVASGS-FSQAVNEDNGQVRIW 50 (51)
T ss_dssp GT-SS---EEEEEETTTTEEEE
T ss_pred cccccc-hHhhhhccCCcEEee
Confidence 455665 55555 567998888
No 85
>PLN02153 epithiospecifier protein
Probab=20.52 E-value=5.3e+02 Score=21.80 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=11.8
Q ss_pred CeEEEEEcCCCEEEecCC
Q 026218 114 AHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 114 ~hs~~lt~~G~vy~wG~n 131 (241)
.|++++- +++||++|=.
T Consensus 244 ~~~~~~~-~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHAVV-GKYIIIFGGE 260 (341)
T ss_pred eeeeEEE-CCEEEEECcc
Confidence 3555544 6899999854
No 86
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.15 E-value=92 Score=27.35 Aligned_cols=19 Identities=5% Similarity=-0.108 Sum_probs=16.0
Q ss_pred cCCCeeEEEecCCcEEEee
Q 026218 219 AGGRHTLILSGYRKYEAIG 237 (241)
Q Consensus 219 ~G~~hs~alt~~G~vy~wG 237 (241)
.-..|.+|+...|+||+|=
T Consensus 112 T~~sHIvAv~TTGNvy~~e 130 (518)
T KOG0883|consen 112 TRFSHIVAVRTTGNVYSWE 130 (518)
T ss_pred cccceEEEEEecCceeeHH
Confidence 3456999999999999994
Done!