Query 026218
Match_columns 241
No_of_seqs 336 out of 1245
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 08:22:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026218.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026218hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 2.6E-38 8.8E-43 275.6 21.8 177 6-240 126-305 (406)
2 4d9s_A UVB-resistance protein 100.0 3.8E-38 1.3E-42 274.5 20.7 177 6-240 178-357 (406)
3 3kci_A Probable E3 ubiquitin-p 100.0 1.9E-38 6.5E-43 275.0 17.8 178 6-240 164-345 (389)
4 3kci_A Probable E3 ubiquitin-p 100.0 4.9E-38 1.7E-42 272.4 18.0 175 8-240 114-293 (389)
5 1a12_A RCC1, regulator of chro 100.0 4.2E-37 1.5E-41 268.4 19.8 176 6-240 169-365 (413)
6 3of7_A Regulator of chromosome 100.0 3.8E-36 1.3E-40 266.6 21.5 226 7-240 73-341 (473)
7 1a12_A RCC1, regulator of chro 100.0 1.6E-36 5.5E-41 264.8 18.7 176 7-240 117-314 (413)
8 3mvd_K Regulator of chromosome 100.0 4.9E-36 1.7E-40 262.4 20.9 217 7-240 133-374 (423)
9 3of7_A Regulator of chromosome 100.0 9.7E-36 3.3E-40 264.0 21.2 186 6-240 209-405 (473)
10 3mvd_K Regulator of chromosome 100.0 9.3E-36 3.2E-40 260.7 18.6 172 7-240 30-207 (423)
11 3qhy_B Beta-lactamase inhibito 100.0 7.3E-31 2.5E-35 217.9 16.2 177 6-241 29-208 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.4E-30 4.7E-35 216.2 16.1 178 5-241 67-247 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.7 0.0046 1.6E-07 49.2 7.0 67 52-133 311-377 (400)
14 4gbf_A Phikz131; 7-bladed beta 96.1 0.0096 3.3E-07 47.4 5.6 68 104-240 309-376 (400)
15 3uc1_A DNA gyrase subunit A; D 81.1 13 0.00045 30.5 9.9 70 62-133 55-129 (327)
16 1gxr_A ESG1, transducin-like e 80.8 18 0.00062 28.2 18.8 114 10-132 11-128 (337)
17 3no0_A DNA gyrase subunit A; D 79.8 14 0.00049 29.5 9.6 75 48-133 22-100 (276)
18 1suu_A DNA gyrase subunit A; t 74.5 33 0.0011 27.8 11.4 123 8-133 6-134 (312)
19 3uc1_A DNA gyrase subunit A; D 69.2 46 0.0016 27.2 15.7 110 13-131 56-175 (327)
20 1wp5_A Topoisomerase IV; broke 68.4 47 0.0016 27.1 11.8 115 9-133 4-126 (323)
21 2zwa_A Leucine carboxyl methyl 68.1 70 0.0024 29.0 15.2 19 60-78 491-509 (695)
22 4aow_A Guanine nucleotide-bind 67.8 37 0.0013 26.5 9.4 74 52-129 259-334 (340)
23 1zvu_A Topoisomerase IV subuni 66.6 79 0.0027 29.0 14.8 110 9-131 471-583 (716)
24 1xip_A Nucleoporin NUP159; bet 66.5 24 0.00082 29.7 8.1 67 62-133 41-116 (388)
25 1p22_A F-BOX/WD-repeat protein 66.4 55 0.0019 27.1 17.7 61 62-132 225-285 (435)
26 1zvt_A Topoisomerase IV subuni 65.8 47 0.0016 26.1 11.1 108 13-133 5-115 (256)
27 1k3i_A Galactose oxidase precu 65.7 32 0.0011 30.8 9.4 60 62-130 246-305 (656)
28 1k8k_C P40, ARP2/3 complex 41 65.1 50 0.0017 26.1 15.2 29 103-131 96-126 (372)
29 1k3i_A Galactose oxidase precu 64.9 45 0.0015 29.8 10.1 18 221-238 288-305 (656)
30 3l6v_A GYRA, DNA gyrase subuni 63.2 65 0.0022 26.8 13.0 121 8-133 5-133 (370)
31 1suu_A DNA gyrase subunit A; t 63.2 59 0.002 26.3 15.6 113 12-133 60-182 (312)
32 1sq9_A Antiviral protein SKI8; 62.7 58 0.002 26.1 14.1 30 103-132 291-322 (397)
33 3odt_A Protein DOA1; ubiquitin 61.3 53 0.0018 25.1 15.7 28 104-131 226-254 (313)
34 3snv_A Symfoil-4T/permutation 60.4 43 0.0015 23.8 10.3 98 10-127 18-116 (143)
35 3p6j_A De novo designed beta-t 59.3 45 0.0015 23.7 8.3 65 51-127 73-138 (142)
36 1p22_A F-BOX/WD-repeat protein 59.2 75 0.0026 26.2 18.5 67 52-132 176-242 (435)
37 1zi0_A DNA gyrase subunit A; b 58.4 71 0.0024 25.7 11.8 69 61-131 54-127 (307)
38 1zvt_A Topoisomerase IV subuni 58.0 66 0.0022 25.2 10.3 118 12-138 46-169 (256)
39 3q7x_A De novo designed beta-t 58.0 45 0.0015 23.3 8.7 99 9-127 14-113 (132)
40 1zvu_A Topoisomerase IV subuni 57.1 1.2E+02 0.004 27.8 11.1 117 13-138 517-639 (716)
41 4aez_A CDC20, WD repeat-contai 56.8 79 0.0027 25.7 17.5 100 12-132 105-205 (401)
42 2zwa_A Leucine carboxyl methyl 56.5 1.2E+02 0.0039 27.6 14.7 62 61-130 442-508 (695)
43 4aez_A CDC20, WD repeat-contai 55.0 85 0.0029 25.5 12.6 60 61-132 104-165 (401)
44 3odt_A Protein DOA1; ubiquitin 52.0 77 0.0026 24.2 17.2 27 103-129 104-130 (313)
45 3fvz_A Peptidyl-glycine alpha- 50.8 91 0.0031 24.7 16.2 19 11-29 26-44 (329)
46 1xip_A Nucleoporin NUP159; bet 47.7 39 0.0013 28.4 6.2 103 11-131 40-154 (388)
47 1zi0_A DNA gyrase subunit A; b 46.7 1.1E+02 0.0038 24.5 15.7 115 12-133 55-177 (307)
48 3no0_A DNA gyrase subunit A; D 45.9 1.1E+02 0.0037 24.2 12.2 114 11-133 81-197 (276)
49 2ovr_B FBW7, F-BOX/WD repeat p 44.3 1.3E+02 0.0045 24.7 17.4 57 62-131 291-347 (445)
50 3sfz_A APAF-1, apoptotic pepti 43.7 2.2E+02 0.0077 27.1 13.0 28 104-131 1179-1206(1249)
51 3dsm_A Uncharacterized protein 43.1 72 0.0025 25.4 7.1 27 106-132 165-192 (328)
52 3dsm_A Uncharacterized protein 42.7 1.2E+02 0.0043 23.9 10.6 15 62-76 87-101 (328)
53 1gxr_A ESG1, transducin-like e 42.3 1.1E+02 0.0039 23.4 15.9 28 104-131 266-295 (337)
54 1q7f_A NHL, brain tumor CG1071 37.6 1.3E+02 0.0045 22.8 15.7 14 13-26 90-106 (286)
55 1wp5_A Topoisomerase IV; broke 35.9 1.7E+02 0.0059 23.6 11.8 120 11-138 51-180 (323)
56 3zwl_B Eukaryotic translation 34.7 1.6E+02 0.0055 22.8 13.5 28 105-132 177-206 (369)
57 1yfq_A Cell cycle arrest prote 34.4 1.6E+02 0.0054 22.7 15.2 30 103-132 150-179 (342)
58 2oiz_A Aromatic amine dehydrog 33.2 1.9E+02 0.0065 23.3 9.6 96 14-124 259-360 (361)
59 2dg1_A DRP35, lactonase; beta 32.7 1.7E+02 0.0059 22.7 9.5 17 62-78 90-106 (333)
60 1r5m_A SIR4-interacting protei 32.1 1.9E+02 0.0065 23.0 15.0 29 104-132 248-278 (425)
61 2xyi_A Probable histone-bindin 30.1 2.3E+02 0.0078 23.2 17.6 65 62-132 196-263 (430)
62 2ovr_B FBW7, F-BOX/WD repeat p 29.4 2.3E+02 0.008 23.1 17.9 29 104-132 280-308 (445)
63 2z2n_A Virginiamycin B lyase; 29.3 1.8E+02 0.0062 21.8 9.0 17 62-78 144-160 (299)
64 2z3g_A Blasticidin-S deaminase 28.8 34 0.0012 23.9 2.5 15 63-78 31-45 (130)
65 2qc5_A Streptogramin B lactona 28.2 1.9E+02 0.0065 21.7 9.1 17 11-27 22-38 (300)
66 2uvk_A YJHT; unknown function, 28.2 2.2E+02 0.0077 22.5 10.3 19 221-240 110-128 (357)
67 2qc5_A Streptogramin B lactona 28.1 1.9E+02 0.0065 21.7 9.1 17 62-78 107-123 (300)
68 2woz_A Kelch repeat and BTB do 27.3 2.1E+02 0.0072 22.3 7.4 17 61-78 151-167 (318)
69 1q7f_A NHL, brain tumor CG1071 26.5 2.1E+02 0.0071 21.6 10.6 17 62-78 210-226 (286)
70 2z2n_A Virginiamycin B lyase; 26.3 2.1E+02 0.007 21.5 9.1 17 62-78 102-118 (299)
71 3mmy_A MRNA export factor; mRN 26.3 2.2E+02 0.0077 21.9 8.8 30 103-132 39-73 (368)
72 3l6v_A GYRA, DNA gyrase subuni 25.8 2.8E+02 0.0097 22.9 15.2 113 12-133 59-181 (370)
73 3no2_A Uncharacterized protein 25.6 2.3E+02 0.0079 21.8 16.0 13 221-233 243-255 (276)
74 3fvz_A Peptidyl-glycine alpha- 24.8 2.5E+02 0.0086 22.0 8.4 17 62-78 27-43 (329)
75 2fr5_A Cytidine deaminase; tet 24.7 44 0.0015 23.9 2.5 15 63-78 40-54 (146)
76 1r5m_A SIR4-interacting protei 24.1 2.7E+02 0.0091 22.0 17.7 57 62-131 261-318 (425)
77 2xn4_A Kelch-like protein 2; s 23.8 2.1E+02 0.0073 22.0 6.7 17 61-78 197-213 (302)
78 1r5t_A Cytidine deaminase; zin 23.6 46 0.0016 23.6 2.4 15 63-78 36-50 (142)
79 3jrp_A Fusion protein of prote 23.2 2.6E+02 0.009 21.6 16.7 58 62-130 117-189 (379)
80 3v7d_B Cell division control p 22.9 3.1E+02 0.011 22.3 18.6 58 62-132 282-341 (464)
81 1yfq_A Cell cycle arrest prote 22.6 2.6E+02 0.009 21.4 14.1 71 51-132 152-225 (342)
82 1pgu_A Actin interacting prote 21.5 3.7E+02 0.013 22.7 12.8 27 211-237 372-399 (615)
83 1uwz_A Cytidine deaminase; CDD 21.3 56 0.0019 23.0 2.4 15 63-78 28-42 (136)
84 1jmx_B Amine dehydrogenase; ox 21.2 2.8E+02 0.0097 21.2 8.1 12 67-78 18-29 (349)
85 1pgu_A Actin interacting prote 20.8 3.8E+02 0.013 22.6 14.2 59 62-132 502-572 (615)
86 3v7d_B Cell division control p 20.8 3.4E+02 0.012 22.1 17.4 58 62-132 324-381 (464)
87 3i2n_A WD repeat-containing pr 20.4 3E+02 0.01 21.2 13.3 147 14-236 84-239 (357)
88 3mmy_A MRNA export factor; mRN 20.3 3E+02 0.01 21.2 14.8 27 105-131 172-198 (368)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2.6e-38 Score=275.61 Aligned_cols=177 Identities=25% Similarity=0.325 Sum_probs=154.7
Q ss_pred ccccCceeEEEecCCcEEEcccCC-CCCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCC
Q 026218 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG 82 (241)
Q Consensus 6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~G 82 (241)
-.++..|+++++++|+||+||.|. ++++... ....|+++..+...+|++|+++ ..|++||+++|+||+||.| .+|
T Consensus 126 ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G-~~hs~alt~~G~v~~wG~n-~~G 203 (406)
T 4d9s_A 126 IACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG-AEHTAAVTEDGDLYGWGWG-RYG 203 (406)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC-SSEEEEEETTSCEEEEECC-TTS
T ss_pred EEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC-CCeEEEEeCCCCEEEeeCC-CCC
Confidence 346788899999999999999986 6766544 4456777777777889999995 4599999999999999999 999
Q ss_pred ccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCC
Q 026218 83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (241)
Q Consensus 83 qlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~ 162 (241)
|||++.......|+++..+...+|++|+||.+|+++|+++|+||+||.|.+||||.
T Consensus 204 qlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~------------------------ 259 (406)
T 4d9s_A 204 NLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGH------------------------ 259 (406)
T ss_dssp TTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCS------------------------
T ss_pred CCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCC------------------------
Confidence 99999877788899998888889999999999999999999999999999998882
Q ss_pred CCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~ 240 (241)
++......|+++..+.+.+|++|+||.+|++||+++|+||+||+++
T Consensus 260 --------------------------------g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 260 --------------------------------GDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNK 305 (406)
T ss_dssp --------------------------------SSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred --------------------------------CCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCC
Confidence 2223567888898888889999999999999999999999999885
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=3.8e-38 Score=274.52 Aligned_cols=177 Identities=24% Similarity=0.374 Sum_probs=153.0
Q ss_pred ccccCceeEEEecCCcEEEcccCC-CCCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCC
Q 026218 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG 82 (241)
Q Consensus 6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~G 82 (241)
-.++..|+++++++|+||+||.|. ++++... ....|.++..+...++++|+++ ..|+++|+++|+||+||.| .+|
T Consensus 178 va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G-~~ht~~l~~~G~v~~wG~n-~~G 255 (406)
T 4d9s_A 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG-WRHTISVSYSGALYTYGWS-KYG 255 (406)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC-SSEEEEEETTCCEEEEECC-TTS
T ss_pred EecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC-CCcEEEEcCCCCEEEeeCC-CCC
Confidence 346778899999999999999986 6666544 3456666766667889999995 5599999999999999999 999
Q ss_pred ccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCC
Q 026218 83 QSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (241)
Q Consensus 83 qlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~ 162 (241)
|||.++......|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.
T Consensus 256 qlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~------------------------ 311 (406)
T 4d9s_A 256 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGV------------------------ 311 (406)
T ss_dssp TTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS------------------------
T ss_pred CCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCC------------------------
Confidence 99999877888899998888889999999999999999999999999999998882
Q ss_pred CCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~ 240 (241)
++......|.++..+...+|++|+||.+|++||+++|+||+||+++
T Consensus 312 --------------------------------g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 312 --------------------------------GNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp --------------------------------SSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred --------------------------------CCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCC
Confidence 2223466788888777789999999999999999999999999986
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=274.97 Aligned_cols=178 Identities=21% Similarity=0.260 Sum_probs=155.1
Q ss_pred ccccCceeEEEecCCcEEEcccCC-CCCCCCC--CcccceeeeecCCCCceeEEecC-CCeEEEEeCCCCEEEeecCCCC
Q 026218 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKS--PILSPIPARLCGGDSWKDVCGGG-CGFALATSESGKLITWGSADDE 81 (241)
Q Consensus 6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~-~~h~~~lt~~G~vy~wG~n~~~ 81 (241)
-.++..|+++++++|+||+||.|. ++++... ....|+++..+...++++|+++. ..|+++|+++|+||+||.| .+
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n-~~ 242 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG-DY 242 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC-GG
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC-CC
Confidence 346788899999999999999986 6666544 44567777777788899999953 2499999999999999999 99
Q ss_pred CccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCC
Q 026218 82 GQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALP 161 (241)
Q Consensus 82 GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~ 161 (241)
||||.+.......|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.
T Consensus 243 GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~----------------------- 299 (389)
T 3kci_A 243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGH----------------------- 299 (389)
T ss_dssp GTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCS-----------------------
T ss_pred CCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC-----------------------
Confidence 999999877778899998887889999999999999999999999999999998882
Q ss_pred CCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218 162 TEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~ 240 (241)
++......|++|..+.+.+|++|+||.+|++||+++|+||+||+++
T Consensus 300 ---------------------------------g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 300 ---------------------------------GSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp ---------------------------------SSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ---------------------------------CCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 2223567899999888899999999999999999999999999986
No 4
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=272.42 Aligned_cols=175 Identities=21% Similarity=0.276 Sum_probs=152.6
Q ss_pred ccCceeEEEecCCcEEEcccCC-CCCCCCC--CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCcc
Q 026218 8 REENEKMEECKETVVYMWGYLP-GTSPEKS--PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84 (241)
Q Consensus 8 ~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~--~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~Gql 84 (241)
++..|+++|+++|+||+||.|. ++++... ....|+++..+...+|++|+++ ..|++||+++|+||+||.| .+|||
T Consensus 114 ~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G-~~hs~alt~~G~v~~wG~n-~~GqL 191 (389)
T 3kci_A 114 SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG-GAHSACVTAAGDLYTWGKG-RYGRL 191 (389)
T ss_dssp TTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTSCEEEEECC-GGGTT
T ss_pred cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC-cCeEEEEeCCCeEEEeCCC-CCCCc
Confidence 5778999999999999999986 6666544 3456777776777789999995 4599999999999999999 99999
Q ss_pred ccCCCCCcCCceeeCCCCCCCeEEEecCC--CeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCC
Q 026218 85 YLTSGKHGETPEPFPLPTEASVVKAAAGW--AHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPT 162 (241)
Q Consensus 85 G~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~ 162 (241)
|++.......|++++.+...+|++|+||. +|+++|+++|+||+||.|.+||||.
T Consensus 192 G~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~------------------------ 247 (389)
T 3kci_A 192 GHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGR------------------------ 247 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSS------------------------
T ss_pred CCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCC------------------------
Confidence 99988778889999888889999999995 8999999999999999999998883
Q ss_pred CCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218 163 EQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~ 240 (241)
++......|.+++.+.+.+|++|+||.+|++||+++|+||+||+++
T Consensus 248 --------------------------------g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 248 --------------------------------GGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp --------------------------------SSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCG
T ss_pred --------------------------------CCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCC
Confidence 1222466788898888889999999999999999999999999975
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=4.2e-37 Score=268.44 Aligned_cols=176 Identities=19% Similarity=0.174 Sum_probs=146.8
Q ss_pred ccccCceeEEEecCCcEEEcccCC-CCCCCCCC-------------cccceeeeec-----CCCCceeEEecCCCeEEEE
Q 026218 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSP-------------ILSPIPARLC-----GGDSWKDVCGGGCGFALAT 66 (241)
Q Consensus 6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~-------------~~~p~~~~~~-----~~~~i~~v~~~~~~h~~~l 66 (241)
-.++..|+++|+++|+||+||.|. ++++.... ...|+.+.++ ...+|++|+|+ ..|++||
T Consensus 169 ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G-~~hs~al 247 (413)
T 1a12_A 169 VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCG-AYFTFAI 247 (413)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEE-TTEEEEE
T ss_pred EEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeC-CCEEEEE
Confidence 346778899999999999999986 67765431 2456666654 34678999995 4599999
Q ss_pred eCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCC--CCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCC
Q 026218 67 SESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTE--ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFG 144 (241)
Q Consensus 67 t~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~--~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~ 144 (241)
+++|+||+||.| .+||||.+.......|+.++.+.+ .+|++|+||.+|++||+++|+||+||.|.+||||.-.
T Consensus 248 t~~G~v~~wG~n-~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~---- 322 (413)
T 1a12_A 248 SHEGHVYGFGLS-NYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE---- 322 (413)
T ss_dssp ETTCCEEEEECC-TTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT----
T ss_pred eCCCCEEEEeCC-CCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCC----
Confidence 999999999999 999999987777778888877655 6799999999999999999999999999999888210
Q ss_pred CCCccccCCCCCcCCCCCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCee
Q 026218 145 SAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHT 224 (241)
Q Consensus 145 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs 224 (241)
+......|++|..+. +|++|+||.+|+
T Consensus 323 ---------------------------------------------------~~~~~~~P~~v~~l~--~v~~v~~G~~hs 349 (413)
T 1a12_A 323 ---------------------------------------------------GAEEKSIPTLISRLP--AVSSVACGASVG 349 (413)
T ss_dssp ---------------------------------------------------TCCCEEEEEECCSSS--SEEEEEECSSEE
T ss_pred ---------------------------------------------------CCccccCCEEecccC--ceeEEEECcceE
Confidence 122466788888765 899999999999
Q ss_pred EEEecCCcEEEeecCC
Q 026218 225 LILSGYRKYEAIGRFL 240 (241)
Q Consensus 225 ~alt~~G~vy~wG~~~ 240 (241)
+||+++|+||+||.++
T Consensus 350 ~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 350 YAVTKDGRVFAWGMGT 365 (413)
T ss_dssp EEEETTSCEEEEECCT
T ss_pred EEEeCCCCEEEecCCC
Confidence 9999999999999985
No 6
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-36 Score=266.65 Aligned_cols=226 Identities=18% Similarity=0.236 Sum_probs=157.3
Q ss_pred cccCceeEEEecCCcEEEcccCC-CCCCCCCC-------------------------cccceeeee--c----CCCCcee
Q 026218 7 KREENEKMEECKETVVYMWGYLP-GTSPEKSP-------------------------ILSPIPARL--C----GGDSWKD 54 (241)
Q Consensus 7 ~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~-------------------------~~~p~~~~~--~----~~~~i~~ 54 (241)
.++..|+++|+++|+||+||.|. ++++.... ...|+++.. + ...+|++
T Consensus 73 a~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~ 152 (473)
T 3of7_A 73 AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQ 152 (473)
T ss_dssp EECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEE
T ss_pred EeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEE
Confidence 46788999999999999999986 66665432 235665552 2 3578999
Q ss_pred EEecCCCeEEEEeCCCCEEEeec--CCCCCccccCCC--CCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecC
Q 026218 55 VCGGGCGFALATSESGKLITWGS--ADDEGQSYLTSG--KHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (241)
Q Consensus 55 v~~~~~~h~~~lt~~G~vy~wG~--n~~~GqlG~~~~--~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~ 130 (241)
|+++ ..|++||+++|+||+||. + .+||||+... .....|++++.+.+.+|++|+||.+|++||+++|+||+||.
T Consensus 153 va~G-~~hs~alt~~G~vy~wG~n~~-~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~ 230 (473)
T 3of7_A 153 LAAT-DNMSCALFSNGEVYAWGTFRC-NEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGN 230 (473)
T ss_dssp EEEC-SSEEEEEETTSCEEEEECEEE-TTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred EEcc-CCEEEEEeCCCeEEEeeCCcC-CCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeC
Confidence 9995 459999999999999998 5 6899998543 34556888888877889999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCce--ee-eeceeeeccCCCCCCCCCCc----cceecc
Q 026218 131 RECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEE--VV-KRRKTSSAREESENPASGDE----FFTLSP 203 (241)
Q Consensus 131 n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~----~~~~~P 203 (241)
|.+||||.-.........+.... .....+...+.+.... ++ ..+...++.........++. .....|
T Consensus 231 n~~GqLG~~~~~~~~~~~~~p~~------~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P 304 (473)
T 3of7_A 231 GQQNQLGRKVMERFRLKTLDPRP------FGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKP 304 (473)
T ss_dssp CTTSTTSSCCCGGGTTTTCSCEE------CSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEE
T ss_pred CCCCCCCCCccccccccccCcee------cCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecc
Confidence 99999985321100000000000 0000111111111111 11 12233444333333333332 356789
Q ss_pred eEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218 204 CLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 204 ~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~ 240 (241)
++|..+.+.+|++|+||.+|++||+++|+||+||+++
T Consensus 305 ~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~ 341 (473)
T 3of7_A 305 KRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLD 341 (473)
T ss_dssp EECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECT
T ss_pred ccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCC
Confidence 9999888889999999999999999999999999976
No 7
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.6e-36 Score=264.78 Aligned_cols=176 Identities=18% Similarity=0.202 Sum_probs=141.6
Q ss_pred cccCceeEEEecCCcEEEccc--CC-CCCCCCCCcc-cceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCC
Q 026218 7 KREENEKMEECKETVVYMWGY--LP-GTSPEKSPIL-SPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEG 82 (241)
Q Consensus 7 ~~~~~~~l~~t~~G~vy~wG~--n~-g~~~~~~~~~-~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~G 82 (241)
.++..|+++|+++|+||+||. |. ++++...... ...|.+++...+|++|+++ ..|+++|+++|+||+||.| .+|
T Consensus 117 a~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G-~~hs~alt~~G~v~~wG~n-~~G 194 (413)
T 1a12_A 117 SAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG-NDHLVMLTADGDLYTLGCG-EQG 194 (413)
T ss_dssp EECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC-SSEEEEEETTSCEEEEECC-TTS
T ss_pred ecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEec-CceEEEEcCCCCEEEeeCC-CCC
Confidence 357788999999999999997 43 5555443222 2234555667789999995 5599999999999999999 999
Q ss_pred ccccCCCC-----------CcCCceeeCCC-----CCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCC
Q 026218 83 QSYLTSGK-----------HGETPEPFPLP-----TEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSA 146 (241)
Q Consensus 83 qlG~~~~~-----------~~~~p~~v~~~-----~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~ 146 (241)
|||.+... ....|+.+.++ ...+|++|+||.+|++||+++|+||+||.|.+||||.
T Consensus 195 qLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~-------- 266 (413)
T 1a12_A 195 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGT-------- 266 (413)
T ss_dssp TTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSC--------
T ss_pred ccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCC--------
Confidence 99986432 12467777664 3578999999999999999999999999999998883
Q ss_pred CccccCCCCCcCCCCCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCC--CcEEEEecCCCee
Q 026218 147 GSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPG--VKITKVAAGGRHT 224 (241)
Q Consensus 147 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~--~~i~~Ia~G~~hs 224 (241)
++......|++|..+.+ .+|++|+||.+|+
T Consensus 267 ------------------------------------------------~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs 298 (413)
T 1a12_A 267 ------------------------------------------------PGTESCFIPQNLTSFKNSTKSWVGFSGGQHHT 298 (413)
T ss_dssp ------------------------------------------------SSCSCEEEEEECGGGCCTTCCEEEEEECSSEE
T ss_pred ------------------------------------------------CCCCcccccEEchhccCCCceEEEEecccceE
Confidence 12224577888887766 6799999999999
Q ss_pred EEEecCCcEEEeecCC
Q 026218 225 LILSGYRKYEAIGRFL 240 (241)
Q Consensus 225 ~alt~~G~vy~wG~~~ 240 (241)
+||+++|+||+||+++
T Consensus 299 ~al~~~G~v~~wG~n~ 314 (413)
T 1a12_A 299 VCMDSEGKAYSLGRAE 314 (413)
T ss_dssp EEEETTSCEEEEECCG
T ss_pred EEEeCCCCEEEeeCCC
Confidence 9999999999999975
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4.9e-36 Score=262.43 Aligned_cols=217 Identities=15% Similarity=0.107 Sum_probs=160.3
Q ss_pred cccCceeEEEecCCcEEEccc--CC-CCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCc
Q 026218 7 KREENEKMEECKETVVYMWGY--LP-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ 83 (241)
Q Consensus 7 ~~~~~~~l~~t~~G~vy~wG~--n~-g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~Gq 83 (241)
.++..|+++|+++|+||+||. |. ++++.......++|++++...+|++|+++ ..|++||+++|+||+||.| .+||
T Consensus 133 a~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G-~~hs~alt~~G~v~~wG~n-~~Gq 210 (423)
T 3mvd_K 133 SAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG-ADHLVILTTAGKVFTVGCA-EQGQ 210 (423)
T ss_dssp EECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC-SSEEEEEETTSCEEEEECC-TTST
T ss_pred EcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC-CCeEEEEecCCeEEEeeCC-cCCc
Confidence 357788999999999999997 54 77776666667888888888899999995 5699999999999999999 9999
Q ss_pred cccCCC-----------CCcCCceeeCCCCCCCeEEEecCCCeEEEE-EcCCCEEEecCCCCCCCCCccc------cCCC
Q 026218 84 SYLTSG-----------KHGETPEPFPLPTEASVVKAAAGWAHCVSV-TEAGEVYTWGWRECVPSAKVTR------DFGS 145 (241)
Q Consensus 84 lG~~~~-----------~~~~~p~~v~~~~~~~i~~ia~G~~hs~~l-t~~G~vy~wG~n~~gQlG~l~~------~~~~ 145 (241)
||.+.. .....|+++..+...+|++|+||.+|++++ +++|+||+||.|.+||||.-.. .|.
T Consensus 211 LG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~- 289 (423)
T 3mvd_K 211 LGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPI- 289 (423)
T ss_dssp TSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEE-
T ss_pred cCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeE-
Confidence 999743 245578999888888999999999999999 5899999999999999987110 110
Q ss_pred CCccccCCCCCcCCCCCCCCCCCCcccCce--ee-eeceeeeccCCCCCCCCCCc-cceecceEeecCCCCcEEEEecCC
Q 026218 146 AGSFQKDSTGKQSALPTEQAPPSDKRAGEE--VV-KRRKTSSAREESENPASGDE-FFTLSPCLVTLNPGVKITKVAAGG 221 (241)
Q Consensus 146 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~~~~P~~v~~~~~~~i~~Ia~G~ 221 (241)
.+ . ...+...+.+.... +. ..+...++.........++. .....|++++.+.+ +|++|+||.
T Consensus 290 --~~--------~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~ 355 (423)
T 3mvd_K 290 --KT--------E---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGE 355 (423)
T ss_dssp --EE--------C---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEET
T ss_pred --Ec--------C---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCC
Confidence 00 0 00011111111111 11 12234444433344444443 23568888888776 899999999
Q ss_pred CeeEEEecCCcEEEeecCC
Q 026218 222 RHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 222 ~hs~alt~~G~vy~wG~~~ 240 (241)
+|++||+++|+||+||.++
T Consensus 356 ~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 356 VCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp TEEEEEETTSCEEEEECCT
T ss_pred CeEEEEcCCCCEEEECCCC
Confidence 9999999999999999986
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-36 Score=264.04 Aligned_cols=186 Identities=20% Similarity=0.285 Sum_probs=143.9
Q ss_pred ccccCceeEEEecCCcEEEcccCC-CCCCCCC------CcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecC
Q 026218 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKS------PILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (241)
Q Consensus 6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~------~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n 78 (241)
-.++..|++++|++|+||+||.|. ++++... ....|.++.+ .+|++|+++ ..|++||+++|+||+||.|
T Consensus 209 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G-~~hs~alt~~G~v~~wG~n 284 (473)
T 3of7_A 209 LAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASG-ENHCFALTKDNKLVSWGLN 284 (473)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEEC-SSEEEEEETTSCEEEEEEC
T ss_pred EEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecC-CCeEEEEecCCCEEEeCCC
Confidence 346788899999999999999986 6776543 2345555533 579999995 4599999999999999999
Q ss_pred CCCCccccCCCC----CcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCC
Q 026218 79 DDEGQSYLTSGK----HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDST 154 (241)
Q Consensus 79 ~~~GqlG~~~~~----~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~ 154 (241)
.+||||++... ....|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.-... +..
T Consensus 285 -~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~------~~~--- 354 (473)
T 3of7_A 285 -QFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDN------LPE--- 354 (473)
T ss_dssp -TTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGG------CCT---
T ss_pred -CCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccc------ccc---
Confidence 99999997543 3456888888888899999999999999999999999999999988842100 000
Q ss_pred CCcCCCCCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEE
Q 026218 155 GKQSALPTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYE 234 (241)
Q Consensus 155 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy 234 (241)
.... ...+.......|..+..+. +|++|+||.+|++||+++|+||
T Consensus 355 -------------------------~~~~--------~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy 399 (473)
T 3of7_A 355 -------------------------YTYK--------DVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAY 399 (473)
T ss_dssp -------------------------TCEE--------CTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEE
T ss_pred -------------------------cccc--------ccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEE
Confidence 0000 0011222456677776543 7999999999999999999999
Q ss_pred EeecCC
Q 026218 235 AIGRFL 240 (241)
Q Consensus 235 ~wG~~~ 240 (241)
+||+++
T Consensus 400 ~wG~n~ 405 (473)
T 3of7_A 400 SWGFGE 405 (473)
T ss_dssp EEECCT
T ss_pred EeeCCC
Confidence 999986
No 10
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=9.3e-36 Score=260.65 Aligned_cols=172 Identities=20% Similarity=0.246 Sum_probs=137.9
Q ss_pred cccCceeEEEecCCcEEEcccCC-CCCCCCCC-cccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCcc
Q 026218 7 KREENEKMEECKETVVYMWGYLP-GTSPEKSP-ILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84 (241)
Q Consensus 7 ~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~-~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~Gql 84 (241)
.++..|.++++++|+||+||.|. ++++.... ...+.|..+....++++|+++. .|+++|+++|+||+||.| .+|||
T Consensus 30 a~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~-~h~~~l~~~G~v~~wG~n-~~GqL 107 (423)
T 3mvd_K 30 AFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGG-MHNLVLTKSGDIYSFGCN-DEGAL 107 (423)
T ss_dssp CCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECS-SEEEEEETTSCEEEEECC-SSSTT
T ss_pred ecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCC-CeEEEEeCCCeEEEeECC-CCcCC
Confidence 45777899999999999999987 77776643 2233343444445789999954 599999999999999999 99999
Q ss_pred ccCCCCC--cCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecC--CCCCCCCCccccCCCCCccccCCCCCcCCC
Q 026218 85 YLTSGKH--GETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW--RECVPSAKVTRDFGSAGSFQKDSTGKQSAL 160 (241)
Q Consensus 85 G~~~~~~--~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~--n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~ 160 (241)
|.+.... ...|.++..+ .+|++|+||.+|++||+++|+||+||. |.+||||..
T Consensus 108 G~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~--------------------- 164 (423)
T 3mvd_K 108 GRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLT--------------------- 164 (423)
T ss_dssp CSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESB---------------------
T ss_pred CCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcC---------------------
Confidence 9986543 5678888754 579999999999999999999999999 999877731
Q ss_pred CCCCCCCCCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218 161 PTEQAPPSDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~ 240 (241)
.......| +..+.+.+|++|+||.+|++||+++|+||+||.++
T Consensus 165 -----------------------------------~~~~~~~p--~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~ 207 (423)
T 3mvd_K 165 -----------------------------------IDGNKRTP--IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAE 207 (423)
T ss_dssp -----------------------------------TTBCEEEE--EESSTTCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred -----------------------------------CCCCCcee--eEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCc
Confidence 11123344 44466789999999999999999999999999875
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=99.97 E-value=7.3e-31 Score=217.92 Aligned_cols=177 Identities=20% Similarity=0.189 Sum_probs=122.7
Q ss_pred ccccCceeEEEecCCcEEEcccCC-CCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCcc
Q 026218 6 SKREENEKMEECKETVVYMWGYLP-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQS 84 (241)
Q Consensus 6 ~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~Gql 84 (241)
-.++..|+++++ +|+||+||.|. ++++. |.+ ...+|++|+++ ..|+++|+ +|+||+||.| .+|||
T Consensus 29 ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~------p~~----~~~~i~~ia~G-~~hs~~l~-~G~v~~wG~n-~~Gql 94 (282)
T 3qhy_B 29 IAGGYFHGLALK-GGKVLGWGANLNGQLTM------PAA----TQSGVDAIAAG-NYHSLALK-DGEVIAWGGN-EDGQT 94 (282)
T ss_dssp EEECSSEEEEEE-TTEEEEEECCSSSTTSC------CGG----GGSCCCEEEEC-SSEEEEEE-TTEEEEEECC-TTSTT
T ss_pred EEeCCCeEEEEE-CCEEEEEeCCCCCCCCC------Ccc----CCCCEEEEEeC-CCEEEEEE-CCEEEEeeCC-CCCCC
Confidence 346778899998 99999999986 66652 221 13478999995 45999996 9999999999 99999
Q ss_pred ccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCC
Q 026218 85 YLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQ 164 (241)
Q Consensus 85 G~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~ 164 (241)
|+ |+++ ..+|++|+||.+|+++|+ +|+||+||.|.+||||...... ..
T Consensus 95 g~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~-------------------~~ 142 (282)
T 3qhy_B 95 TV--------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQ-------------------SG 142 (282)
T ss_dssp CC--------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGG-------------------SS
T ss_pred CC--------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCC-------------------CC
Confidence 84 4333 247999999999999999 9999999999999888421100 00
Q ss_pred CCCCCcccCc--eeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCCC
Q 026218 165 APPSDKRAGE--EVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFLM 241 (241)
Q Consensus 165 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~~ 241 (241)
+.....+... .+...+...++....... .++.....+|++|+||.+|++|| ++|+||+||+++.
T Consensus 143 i~~i~~G~~~~~~l~~G~v~~wG~n~~gql------------g~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 143 VTALDGGVYTALAVKNGGVIAWGDNYFGQT------------TVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp EEEEEECSSEEEEEETTEEEEEECCTTSTT------------SCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTT
T ss_pred eEEEEcccCEEEEEECCEEEEecCCCCCCC------------CCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCC
Confidence 0000000111 111111222221111110 14444557899999999999999 8999999999863
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=99.97 E-value=1.4e-30 Score=216.24 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=122.7
Q ss_pred cccccCceeEEEecCCcEEEcccCC-CCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCc
Q 026218 5 GSKREENEKMEECKETVVYMWGYLP-GTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQ 83 (241)
Q Consensus 5 ~~~~~~~~~l~~t~~G~vy~wG~n~-g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~Gq 83 (241)
.-.++..|+++++ +|+||+||.|. ++++. |.++ ..+|++|+++ ..|+++|+ +|+||+||.| .+||
T Consensus 67 ~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~------P~~~----~~~v~~ia~G-~~hs~al~-~G~v~~wG~n-~~gq 132 (282)
T 3qhy_B 67 AIAAGNYHSLALK-DGEVIAWGGNEDGQTTV------PAEA----RSGVDAIAAG-AWASYALK-DGKVIAWGDD-SDGQ 132 (282)
T ss_dssp EEEECSSEEEEEE-TTEEEEEECCTTSTTCC------CGGG----SSSEEEEEEE-TTEEEEEE-TTEEEEEECC-TTST
T ss_pred EEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC------Cccc----CCCeEEEECc-CCEEEEEe-CCeEEEecCC-CCCc
Confidence 3446788899996 99999999986 66653 3333 2478999995 45999999 9999999999 9999
Q ss_pred cccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCC
Q 026218 84 SYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTE 163 (241)
Q Consensus 84 lG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~ 163 (241)
||.. . +...+|++|+||.+|+++|+ +|+||+||.|.+||||..... . .
T Consensus 133 lg~~--------~----~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~----------------~---~ 180 (282)
T 3qhy_B 133 TTVP--------A----EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEA----------------Q---S 180 (282)
T ss_dssp TSCC--------G----GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGG----------------G---S
T ss_pred CCCC--------c----cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceec----------------C---C
Confidence 9732 1 12356999999999999999 899999999999988842110 0 0
Q ss_pred CCCCCCcccCc--eeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCCC
Q 026218 164 QAPPSDKRAGE--EVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFLM 241 (241)
Q Consensus 164 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~~ 241 (241)
.+...+.+... .+...+...++...... .-.|. +. ..+|++|+||.+|++||+ +|+||+||+++.
T Consensus 181 ~v~~i~~G~~hs~al~~G~v~~wG~n~~gq--------lg~p~--~~--~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 181 GVDDVAGGIFHSLALKDGKVIAWGDNRYKQ--------TTVPT--EA--LSGVSAIASGEWYSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp SEEEEEECSSEEEEEETTEEEEEECCTTST--------TCCCG--GG--GSSCCEEEECSSCEEEEE-TTEEEEESTTCC
T ss_pred CeEEEEecCCEEEEEECCeEEEEECCCCCC--------CCCCc--cc--CCCceEEEcCCCEEEEEE-CCEEEEecCCCC
Confidence 01111111111 11112222332111111 12343 22 247999999999999999 999999999863
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.69 E-value=0.0046 Score=49.20 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=53.6
Q ss_pred ceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCC
Q 026218 52 WKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 52 i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n 131 (241)
+..|+. ..+|.+++--+++||+||++ +.||+-+... ..+..++++|.++++-++.-..+-.||..
T Consensus 311 i~~VsG-~y~H~vvi~gd~el~sFG~~-sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 311 IGGVSG-LYTHYTVMYGDGQIAFFGNN-DNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp CCCCBC-SSSEEEC-CTTTCCCEEECC-TTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred cccccc-cccceEEEecCceeEEeccC-CCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 334443 45599999999999999999 8999854211 34689999999999999999999999987
Q ss_pred CC
Q 026218 132 EC 133 (241)
Q Consensus 132 ~~ 133 (241)
-.
T Consensus 376 PD 377 (400)
T 4gbf_A 376 PD 377 (400)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.06 E-value=0.0096 Score=47.41 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=55.2
Q ss_pred CCeEEEecCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCCCCcccCceeeeeceee
Q 026218 104 ASVVKAAAGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPPSDKRAGEEVVKRRKTS 183 (241)
Q Consensus 104 ~~i~~ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (241)
..|.+|+--+.|.+++--++++|+||.++.||+-..+
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~------------------------------------------- 345 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD------------------------------------------- 345 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG-------------------------------------------
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCC-------------------------------------------
Confidence 4588889999999999999999999999997654211
Q ss_pred eccCCCCCCCCCCccceecceEeecCCCCcEEEEecCCCeeEEEecCCcEEEeecCC
Q 026218 184 SAREESENPASGDEFFTLSPCLVTLNPGVKITKVAAGGRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~G~~hs~alt~~G~vy~wG~~~ 240 (241)
. ..+..++++|.++++-+..-..+-.||.-+
T Consensus 346 ----------------t----------agPfla~~AG~~fTVTVn~~nyv~FWGDSP 376 (400)
T 4gbf_A 346 ----------------H----------AGPYIQLAAGHNFTVTVNTLNQVMFWGDSP 376 (400)
T ss_dssp ----------------G----------GCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred ----------------C----------cchHHhHhccCCeEEEEeceeeEEEecCCC
Confidence 1 125789999999999999999999999743
No 15
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=81.09 E-value=13 Score=30.55 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=43.6
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCC-----CeEEEEEcCCCEEEecCCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~-----~hs~~lt~~G~vy~wG~n~~ 133 (241)
+.+++|+.|++|..--. ..-..+.. ..-......+++..+++|+.+.+.. ...+++|++|.+.-.-..+|
T Consensus 55 ~ll~fT~~Gr~y~~~~~-~lp~~~r~-~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~ 129 (327)
T 3uc1_A 55 LILFFTTQGRVYRAKAY-DLPEASRT-ARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDF 129 (327)
T ss_dssp EEEEEETTSEEEEEEGG-GSCBCCSS-SCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGG
T ss_pred EEEEEeCCCeEEEEEHH-HCcCCCcc-CCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHh
Confidence 78889999999998765 33322111 0001111235666688899887664 36778888887776544433
No 16
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=80.82 E-value=18 Score=28.24 Aligned_cols=114 Identities=10% Similarity=0.026 Sum_probs=58.5
Q ss_pred CceeEEEecCCcEEEcccCCCCCCCCCCcccceeeeec-CCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCC
Q 026218 10 ENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLC-GGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTS 88 (241)
Q Consensus 10 ~~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~-~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~ 88 (241)
....+.+..+|++++++...+............++... ....+..++....+..++...+|.|..|-.. .....
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~-~~~~~---- 85 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDIS-HPGNK---- 85 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETT-STTCC----
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECC-CCCce----
Confidence 34578999999999998765433221111111222222 2334555555333344455557888888665 21110
Q ss_pred CCCcCCceeeC-CCCCCCeEEEecCCC--eEEEEEcCCCEEEecCCC
Q 026218 89 GKHGETPEPFP-LPTEASVVKAAAGWA--HCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 89 ~~~~~~p~~v~-~~~~~~i~~ia~G~~--hs~~lt~~G~vy~wG~n~ 132 (241)
.....+. ......|..++...+ ..++-..+|.|+.|-...
T Consensus 86 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 86 ----SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp ----SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred ----eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 1111111 122345666655433 445556788899985543
No 17
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.78 E-value=14 Score=29.46 Aligned_cols=75 Identities=15% Similarity=0.004 Sum_probs=45.1
Q ss_pred CCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecC---CCeEEEEEcCC
Q 026218 48 GGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG---WAHCVSVTEAG 123 (241)
Q Consensus 48 ~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G---~~hs~~lt~~G 123 (241)
.+..+..+...... +.+++|++|++|.---. +.-. ..... + +..+++|+.+.+- ....+++|++|
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~-~lp~---~~~~~------l-l~~~e~i~~v~~~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGS-QALQ---GSKVS------L-KSREEKIVGAFIREKFGNRLLLATKKG 90 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSH-HHHT---SEECC------C-SSTTCCEEEEEEGGGSCSEEEEEETTS
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhh-hCcc---Ccccc------c-CCCCCEEEEEECCcCCCCEEEEEeCCC
Confidence 34445444432232 78999999999987543 2211 00000 3 5557889988761 24678899999
Q ss_pred CEEEecCCCC
Q 026218 124 EVYTWGWREC 133 (241)
Q Consensus 124 ~vy~wG~n~~ 133 (241)
.+.-.-..++
T Consensus 91 ~iKr~~l~~~ 100 (276)
T 3no0_A 91 YVKKIPLAEF 100 (276)
T ss_dssp EEEEEEGGGT
T ss_pred EEEEEEHHHh
Confidence 8877654443
No 18
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=74.55 E-value=33 Score=27.81 Aligned_cols=123 Identities=15% Similarity=0.037 Sum_probs=65.0
Q ss_pred ccCceeEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEec-CCCeEEEEeCCCCEEEeecCCCCCcccc
Q 026218 8 REENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGG-GCGFALATSESGKLITWGSADDEGQSYL 86 (241)
Q Consensus 8 ~~~~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~-~~~h~~~lt~~G~vy~wG~n~~~GqlG~ 86 (241)
.++...+.+|++|.|---=...-.. .+....-..-+.+..+..+..+... ...+.+++|+.|++|..-.. ..-..+.
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~-~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~-~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKL-QGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAY-EIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCB-CCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGG-GSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhc-cccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHH-HCCCCCc
Confidence 3455578899999886543211000 0000001112233344445443332 23389999999999999765 3322221
Q ss_pred CCCCCcCCceeeCCCCCCCeEEEecC-----CCeEEEEEcCCCEEEecCCCC
Q 026218 87 TSGKHGETPEPFPLPTEASVVKAAAG-----WAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 87 ~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~hs~~lt~~G~vy~wG~n~~ 133 (241)
.. .-......+++..+.+|+.+... ..+.+++|++|.++-.-..++
T Consensus 84 ~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~ 134 (312)
T 1suu_A 84 AS-KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDF 134 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGG
T ss_pred cC-CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHh
Confidence 10 01112234455567788887664 346889999999998765544
No 19
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=69.25 E-value=46 Score=27.23 Aligned_cols=110 Identities=8% Similarity=-0.032 Sum_probs=63.9
Q ss_pred eEEEecCCcEEEcccCCCC----CCCCCCcccceeeeecCCCCceeEEecCC----CeEEEEeCCCCEEEeecCCCCCcc
Q 026218 13 KMEECKETVVYMWGYLPGT----SPEKSPILSPIPARLCGGDSWKDVCGGGC----GFALATSESGKLITWGSADDEGQS 84 (241)
Q Consensus 13 ~l~~t~~G~vy~wG~n~g~----~~~~~~~~~p~~~~~~~~~~i~~v~~~~~----~h~~~lt~~G~vy~wG~n~~~Gql 84 (241)
-|++|+.|++|..--.+-. ...+.+ ....+.+..+.+|..+..... ...+++|++|.+.-.-.. .|-..
T Consensus 56 ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~--i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~-~~~~~ 132 (327)
T 3uc1_A 56 ILFFTTQGRVYRAKAYDLPEASRTARGQH--VANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLT-DFDSN 132 (327)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCSSSCCEE--HHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGG-GGCCC
T ss_pred EEEEeCCCeEEEEEHHHCcCCCccCCCEE--HHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHH-Hhhcc
Confidence 6779999999988743211 111111 112234445677777666542 268889999988777654 22211
Q ss_pred ccCCCCCcCCceeeCCCCCCCeEE--EecCCCeEEEEEcCCCEEEecCC
Q 026218 85 YLTSGKHGETPEPFPLPTEASVVK--AAAGWAHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 85 G~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~hs~~lt~~G~vy~wG~n 131 (241)
...-...+.+..+..++. ++.+.++.+++|++|++|-+-..
T Consensus 133 ------~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~ 175 (327)
T 3uc1_A 133 ------RSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSAT 175 (327)
T ss_dssp ------CSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred ------ccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence 000112223333444443 34567789999999999998766
No 20
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=68.35 E-value=47 Score=27.07 Aligned_cols=115 Identities=11% Similarity=0.019 Sum_probs=60.6
Q ss_pred cCceeEEEecCCcEEEcccCC--CCCCCCCCcccceeeeecCCCCceeEEec-CCCeEEEEeCCCCEEEeecCCCCCccc
Q 026218 9 EENEKMEECKETVVYMWGYLP--GTSPEKSPILSPIPARLCGGDSWKDVCGG-GCGFALATSESGKLITWGSADDEGQSY 85 (241)
Q Consensus 9 ~~~~~l~~t~~G~vy~wG~n~--g~~~~~~~~~~p~~~~~~~~~~i~~v~~~-~~~h~~~lt~~G~vy~wG~n~~~GqlG 85 (241)
++...+.+|++|.|=---... .+. ..-+.+..+..+..+... ...+.+++|+.|++|..-.. +.-..+
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~--------~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~-elp~~~ 74 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASN--------GQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVH-ELPDIR 74 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTT--------TCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGG-GSCBCC
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcC--------ccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHH-HCcCCC
Confidence 344567888888775432100 000 011222334444433321 33389999999999999776 333332
Q ss_pred cCCCCCcCCceeeCCCCCCCeEEEecCC-----CeEEEEEcCCCEEEecCCCC
Q 026218 86 LTSGKHGETPEPFPLPTEASVVKAAAGW-----AHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 86 ~~~~~~~~~p~~v~~~~~~~i~~ia~G~-----~hs~~lt~~G~vy~wG~n~~ 133 (241)
... .-......+++..+.+|+.+..-. ...+++|++|.+.-.-..+|
T Consensus 75 r~a-~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~ 126 (323)
T 1wp5_A 75 WKD-LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHY 126 (323)
T ss_dssp TTS-CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGG
T ss_pred CCC-CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHh
Confidence 110 011112334555677788765432 25778888887776544433
No 21
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=68.13 E-value=70 Score=28.98 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=15.2
Q ss_pred CCeEEEEeCCCCEEEeecC
Q 026218 60 CGFALATSESGKLITWGSA 78 (241)
Q Consensus 60 ~~h~~~lt~~G~vy~wG~n 78 (241)
.+|++++-.+|+||.+|-.
T Consensus 491 ~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp BSCEEEECTTSCEEEECCB
T ss_pred ccceEEEEcCCEEEEECCC
Confidence 3488888668999999865
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=67.84 E-value=37 Score=26.52 Aligned_cols=74 Identities=9% Similarity=0.030 Sum_probs=33.6
Q ss_pred ceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCC--eEEEEEcCCCEEEec
Q 026218 52 WKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA--HCVSVTEAGEVYTWG 129 (241)
Q Consensus 52 i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~--hs~~lt~~G~vy~wG 129 (241)
+..++.-..++.++...+|.|+.|-.. .+++-.... . .............|..++...+ ..+.-..||.|+.|=
T Consensus 259 v~~~~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~-~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 259 INALCFSPNRYWLCAATGPSIKIWDLE--GKIIVDELK-Q-EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEEECSSSSEEEEEETTEEEEEETT--TTEEEEEEC-C-C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeeecCCCCceeeccCCCEEEEEECC--CCeEEEecc-c-cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 333443222356666677778777554 122110000 0 0000000111345766665443 445556788899883
No 23
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=66.62 E-value=79 Score=28.98 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=57.3
Q ss_pred cCceeEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCccccC
Q 026218 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLT 87 (241)
Q Consensus 9 ~~~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~ 87 (241)
++...+.++.+|-+-.-|-. +. .+.-.....+..+..+...... +.+++|+.|++|.---. ..-..
T Consensus 471 ~e~v~v~ls~~GyiKr~~g~----~~-----~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~-~lP~~--- 537 (716)
T 1zvu_A 471 SEPVTIVLSQMGWVRSAKGH----DI-----DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI-TLPSA--- 537 (716)
T ss_dssp CCCCCEEEETTTEEEECCC------------------------CCEEECCCSSSCEEEEETTSEEEEECTT-TSCCC---
T ss_pred CceEEEEEecCCeEeccCCC----Cc-----CccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEee-ecccc---
Confidence 33447888999988663211 00 0111122333444444432222 78999999999998765 33221
Q ss_pred CCCCcCCceeeCCCCCCCeEEEecCC--CeEEEEEcCCCEEEecCC
Q 026218 88 SGKHGETPEPFPLPTEASVVKAAAGW--AHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 88 ~~~~~~~p~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~vy~wG~n 131 (241)
...-......+++..+++|+.+.+.. .+.++.|++|.+.-.-..
T Consensus 538 ~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~ 583 (716)
T 1zvu_A 538 RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 583 (716)
T ss_dssp C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG
T ss_pred cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHH
Confidence 11111222334555678899887763 356677888877765433
No 24
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=66.51 E-value=24 Score=29.74 Aligned_cols=67 Identities=19% Similarity=0.082 Sum_probs=40.6
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccC--------CCCCcCCc-eeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLT--------SGKHGETP-EPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~--------~~~~~~~p-~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
..++++.+..++..|.+ ..-.+... +......| ..++++ . |.+|++ ....+++.++|.|..|=...
T Consensus 41 nlLais~~~gll~a~~~-~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp--~-V~~l~f-d~~~L~v~~~~~l~v~dv~s 115 (388)
T 1xip_A 41 QNLDISNSKSLFVAASG-SKAVVGELQLLRDHITSDSTPLTFKWEKEIP--D-VIFVCF-HGDQVLVSTRNALYSLDLEE 115 (388)
T ss_dssp BCEEEETTTTEEEEEET-TEEEEEEHHHHHHHHHSSSCCCCCSEEEECT--T-EEEEEE-ETTEEEEEESSEEEEEESSS
T ss_pred cEEEEcCCCCEEEEeCC-CEEEEEEhhHhhhhhccccccccceEEeeCC--C-eeEEEE-CCCEEEEEcCCcEEEEEchh
Confidence 56778877777777766 32222110 00011335 445554 3 999999 77778888889999986554
Q ss_pred C
Q 026218 133 C 133 (241)
Q Consensus 133 ~ 133 (241)
.
T Consensus 116 l 116 (388)
T 1xip_A 116 L 116 (388)
T ss_dssp T
T ss_pred h
Confidence 3
No 25
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=66.38 E-value=55 Score=27.08 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=36.9
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
..+.-+.||.|+.|-.. .... ..+..........|..++....+.++-+.+|.|..|-...
T Consensus 225 ~l~s~s~dg~i~vwd~~-~~~~---------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 285 (435)
T 1p22_A 225 MMVTCSKDRSIAVWDMA-SPTD---------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTST 285 (435)
T ss_dssp EEEEEETTSCEEEEECS-SSSC---------CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred EEEEeeCCCcEEEEeCC-CCCC---------ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCc
Confidence 55555677777777554 1110 1111222222456888887777888888899999996554
No 26
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=65.82 E-value=47 Score=26.08 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=59.7
Q ss_pred eEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEec-CCCeEEEEeCCCCEEEeecCCCCCccccCCCCC
Q 026218 13 KMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGG-GCGFALATSESGKLITWGSADDEGQSYLTSGKH 91 (241)
Q Consensus 13 ~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~-~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~ 91 (241)
.+.+|++|.|-.--... . ...-+.+..+..+..+... ...+.+++|+.|++|..-.. +.-.. ...-
T Consensus 5 ~v~lT~~G~iKr~~~~~--~-------~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~-elp~~---r~~G 71 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHD--I-------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI-TLPSA---RGQG 71 (256)
T ss_dssp EEEEETTSEEEEEESSC--C-------CSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGG-GSCCS---SSCC
T ss_pred EEEEeCCCEEEEeeCCc--C-------CceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHH-HCCCc---CCCC
Confidence 56788888875432110 0 0112233445555544332 22379999999999999766 32111 0000
Q ss_pred cCCceeeCCCCCCCeEEEecC--CCeEEEEEcCCCEEEecCCCC
Q 026218 92 GETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 92 ~~~p~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~vy~wG~n~~ 133 (241)
......+++..+.+|+.+.+. ..+-+++|++|.+.-.-..++
T Consensus 72 ~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 72 EPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp EEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred eEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 111123455567788888763 335677888887776644443
No 27
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=65.72 E-value=32 Score=30.78 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=33.0
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~ 130 (241)
|++++..+|+||.+|-. ....+-.=+ ......+.+..+.. .=++|++++..+|+||++|-
T Consensus 246 ~~~~~~~~g~lyv~GG~-~~~~v~~yd-~~t~~W~~~~~~~~-------~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGN-DAKKTSLYD-SSSDSWIPGPDMQV-------ARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSS-STTCEEEEE-GGGTEEEECCCCSS-------CCSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCC-CCCceEEec-CcCCceeECCCCCc-------cccccceEEecCCeEEEEeC
Confidence 45777889999999975 222110000 00111122221111 12468888877999999985
No 28
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=65.07 E-value=50 Score=26.14 Aligned_cols=29 Identities=0% Similarity=-0.198 Sum_probs=16.1
Q ss_pred CCCeEEEecC--CCeEEEEEcCCCEEEecCC
Q 026218 103 EASVVKAAAG--WAHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 103 ~~~i~~ia~G--~~hs~~lt~~G~vy~wG~n 131 (241)
...|..++.. ....++-+.+|.|+.|-..
T Consensus 96 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~ 126 (372)
T 1k8k_C 96 NRAARCVRWAPNEKKFAVGSGSRVISICYFE 126 (372)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCEEEEEEec
Confidence 3446655543 2344455567778777433
No 29
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=64.86 E-value=45 Score=29.85 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=14.5
Q ss_pred CCeeEEEecCCcEEEeec
Q 026218 221 GRHTLILSGYRKYEAIGR 238 (241)
Q Consensus 221 ~~hs~alt~~G~vy~wG~ 238 (241)
..|++++..+|+||++|-
T Consensus 288 ~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 288 GYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SSCEEEECTTSCEEEECC
T ss_pred cccceEEecCCeEEEEeC
Confidence 457877777899999986
No 30
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=63.19 E-value=65 Score=26.84 Aligned_cols=121 Identities=12% Similarity=-0.065 Sum_probs=65.0
Q ss_pred ccCceeEEEecCCcEEEcccCC--CCCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCcc
Q 026218 8 REENEKMEECKETVVYMWGYLP--GTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQS 84 (241)
Q Consensus 8 ~~~~~~l~~t~~G~vy~wG~n~--g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~Gql 84 (241)
.++...+.+|++|.|=---... .+.... .-..-+.+..+..+..+.....+ +.+++|+.|++|.+--. ..-..
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g---~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~-eip~~ 80 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGG---RGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVH-QLPEA 80 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCC---CCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGG-GSCBC
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCC---CCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHH-HCcCC
Confidence 3455678889999776532110 000000 00122334445555544442332 68889999999999765 33332
Q ss_pred ccCCCCCcCCceeeCCCCCCCeEEEecC-----CCeEEEEEcCCCEEEecCCCC
Q 026218 85 YLTSGKHGETPEPFPLPTEASVVKAAAG-----WAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 85 G~~~~~~~~~p~~v~~~~~~~i~~ia~G-----~~hs~~lt~~G~vy~wG~n~~ 133 (241)
|... .-......+++..+.+|+.+.+- ..+.+++|++|.+.-.-...|
T Consensus 81 ~r~a-~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~ 133 (370)
T 3l6v_A 81 GSNA-RGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEF 133 (370)
T ss_dssp CTTS-CCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGG
T ss_pred Cccc-CCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHh
Confidence 2110 01111123345567888887664 236788888887776654444
No 31
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=63.16 E-value=59 Score=26.28 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=65.5
Q ss_pred eeEEEecCCcEEEcccCC----CCCCCCCCcccceeeeecCCCCceeEEecC----CCeEEEEeCCCCEEEeecCCCCCc
Q 026218 12 EKMEECKETVVYMWGYLP----GTSPEKSPILSPIPARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSADDEGQ 83 (241)
Q Consensus 12 ~~l~~t~~G~vy~wG~n~----g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~----~~h~~~lt~~G~vy~wG~n~~~Gq 83 (241)
+.+++|+.|.+|.+--.+ +....+.+ ....+++..+..+..+.... ..+.+++|++|.++-.-.. .+-.
T Consensus 60 ~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~--i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~-~~~~ 136 (312)
T 1suu_A 60 YLFMISNEGKLYLINAYEIKDSSRASKGQN--ISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFEST-DFKA 136 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCC-------CB--GGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG-GGCC
T ss_pred EEEEEECCCeEEEEEHHHCCCCCccCCCcC--hhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHH-Hhhc
Confidence 478899999999987542 11111111 11234445566676665542 2268899999999998776 3311
Q ss_pred cccCCCCCcCCceeeCCCCCCCeEEEe--cCCCeEEEEEcCCCEEEecCCCC
Q 026218 84 SYLTSGKHGETPEPFPLPTEASVVKAA--AGWAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 84 lG~~~~~~~~~p~~v~~~~~~~i~~ia--~G~~hs~~lt~~G~vy~wG~n~~ 133 (241)
.. ... -..+.+..+..++.+. .+..+.+++|++|.++-+-..+.
T Consensus 137 ~r-~~G-----~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev 182 (312)
T 1suu_A 137 VK-SRG-----VIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDV 182 (312)
T ss_dssp -----C-----EECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGS
T ss_pred cC-CCc-----EEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHc
Confidence 00 000 1112333355566544 35678899999999988876654
No 32
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=62.68 E-value=58 Score=26.11 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=18.8
Q ss_pred CCCeEEEecC--CCeEEEEEcCCCEEEecCCC
Q 026218 103 EASVVKAAAG--WAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 103 ~~~i~~ia~G--~~hs~~lt~~G~vy~wG~n~ 132 (241)
...|..++.. ....++-+.+|.|+.|-...
T Consensus 291 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 291 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 3456666654 34555556788899886543
No 33
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=61.26 E-value=53 Score=25.14 Aligned_cols=28 Identities=21% Similarity=0.053 Sum_probs=17.2
Q ss_pred CCeEEEecCCC-eEEEEEcCCCEEEecCC
Q 026218 104 ASVVKAAAGWA-HCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 104 ~~i~~ia~G~~-hs~~lt~~G~vy~wG~n 131 (241)
..|..++.-.+ ..++.+.+|.|+.|-..
T Consensus 226 ~~i~~~~~~~~~~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 226 SFVYCIKLLPNGDIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp SCEEEEEECTTSCEEEEETTSEEEEECTT
T ss_pred ceEEEEEEecCCCEEEEecCCEEEEEECC
Confidence 44666665433 45566678888888543
No 34
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}
Probab=60.39 E-value=43 Score=23.83 Aligned_cols=98 Identities=9% Similarity=-0.019 Sum_probs=51.1
Q ss_pred CceeEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCC
Q 026218 10 ENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSG 89 (241)
Q Consensus 10 ~~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~ 89 (241)
..+-|.|..||.|=.=.. . ......+...++. ..++.|-+...++-+++..+|+||+--.. .
T Consensus 18 ~g~~LqI~~dG~V~Gt~~--~--~~~~s~l~~~sv~----~G~V~I~gv~sg~yL~m~~~G~v~Gs~~~----------~ 79 (143)
T 3snv_A 18 GGQYLRINPDGTVDGTRD--R--SDTHIQFQISPEG----NGEVLLKSTETGQYLRINPDGTVDGTRDR----------S 79 (143)
T ss_dssp -CCEEEECTTSBEEEESC--T--TCTTSEEEEEEEE----TTEEEEEETTTTEEEEECTTSBEEEECCT----------T
T ss_pred CCEEEEECCCCCEeeecC--C--CCCceEEEEEecc----CCeEEEEEEcccEEEeECCCCCEeecccC----------C
Confidence 344677888888863211 1 1111122222222 23556666556688999999999975332 1
Q ss_pred CCcCCceeeCCCCC-CCeEEEecCCCeEEEEEcCCCEEE
Q 026218 90 KHGETPEPFPLPTE-ASVVKAAAGWAHCVSVTEAGEVYT 127 (241)
Q Consensus 90 ~~~~~p~~v~~~~~-~~i~~ia~G~~hs~~lt~~G~vy~ 127 (241)
.....-..+..... ..|..+..| .-+|++.+|++|.
T Consensus 80 ~ec~flE~~~e~~g~v~i~~~~sg--~Ylamnk~Grl~G 116 (143)
T 3snv_A 80 DTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 116 (143)
T ss_dssp CTTSEEEEEECSTTEEEEEETTTC--CEEEECTTSBEEE
T ss_pred CcceEEEEEecCCcEEEEEEeeCC--EEEEEcCCCcCcC
Confidence 11111222222111 123333344 5789999999964
No 35
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=59.26 E-value=45 Score=23.73 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=37.9
Q ss_pred CceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCC-CCCCeEEEecCCCeEEEEEcCCCEEE
Q 026218 51 SWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLP-TEASVVKAAAGWAHCVSVTEAGEVYT 127 (241)
Q Consensus 51 ~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~-~~~~i~~ia~G~~hs~~lt~~G~vy~ 127 (241)
.++.|-+...++-+++..+|+||+--.. . .....-..+... ....|..+..|+ -+|++.+|++|.
T Consensus 73 G~V~L~g~~sg~yL~mn~~G~l~Gs~~~---t-------~ecsflEi~~en~y~v~i~g~~sg~--YLamnk~Grlyg 138 (142)
T 3p6j_A 73 GEVLLKSTETGQYLRINPDGTVDGTRDR---S-------DTHIQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVDG 138 (142)
T ss_dssp TEEEEEETTTTEEEEECTTSBEEEECCT---T-------CGGGCEEEEECSTTCEEEEETTTCC--EEEECTTSBEEE
T ss_pred CEEEEEEecCCEEEeECCCCCEeecccC---C-------CCceEEEEEeecCcEEEEEEecCCE--EEEECCCcCCcc
Confidence 4566776545688999999999964322 0 111111222221 122244444554 889999999996
No 36
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=59.22 E-value=75 Score=26.22 Aligned_cols=67 Identities=9% Similarity=0.101 Sum_probs=42.0
Q ss_pred ceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCC
Q 026218 52 WKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 52 i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n 131 (241)
+..++. .....+.-+.||.|..|-.. . |++ ...+. .....|..++......+.-+.+|.|+.|-..
T Consensus 176 v~~l~~-~~~~l~sg~~dg~i~vwd~~-~-~~~----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 176 VLCLQY-DERVIITGSSDSTVRVWDVN-T-GEM----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp EEEEEC-CSSEEEEEETTSCEEEEESS-S-CCE----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred EEEEEE-CCCEEEEEcCCCeEEEEECC-C-CcE----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCC
Confidence 444444 22255566788899999765 2 221 11111 1245688888877788888899999999654
Q ss_pred C
Q 026218 132 E 132 (241)
Q Consensus 132 ~ 132 (241)
.
T Consensus 242 ~ 242 (435)
T 1p22_A 242 S 242 (435)
T ss_dssp S
T ss_pred C
Confidence 3
No 37
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=58.40 E-value=71 Score=25.70 Aligned_cols=69 Identities=12% Similarity=0.076 Sum_probs=41.1
Q ss_pred CeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEec-----CCCeEEEEEcCCCEEEecCC
Q 026218 61 GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA-----GWAHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 61 ~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~-----G~~hs~~lt~~G~vy~wG~n 131 (241)
.+.++.|+.|++|..-.. +.-..+... .-......+++..+.+|+.+.. .....+++|++|.+.-.-..
T Consensus 54 ~~ll~fT~~G~~~~~~~~-elp~~~~~a-~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 54 DHILCFSSRGRVYSMKVY-QLPEATRGA-RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp CEEEEEETTSEEEEEEGG-GSCCCCSSS-CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred CEEEEEECCCEEEEEEhh-HCcCCCCCC-CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH
Confidence 389999999999999776 333332110 0011112344556778887754 22346777888877655433
No 38
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=58.04 E-value=66 Score=25.20 Aligned_cols=118 Identities=14% Similarity=0.036 Sum_probs=65.7
Q ss_pred eeEEEecCCcEEEcccCCC--CCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCccccCC
Q 026218 12 EKMEECKETVVYMWGYLPG--TSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTS 88 (241)
Q Consensus 12 ~~l~~t~~G~vy~wG~n~g--~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~~ 88 (241)
+-+++|+.|++|.+--.+- ....+.+ ....+++..+..|..+...... +.+++|++|.+.-.-.. ++-...
T Consensus 46 ~ll~~T~~Gr~~~~~~~elp~~r~~G~~--i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~-e~~~~~--- 119 (256)
T 1zvt_A 46 PVVFVDSTGRSYAIDPITLPSARGQGEP--LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN-DLVARN--- 119 (256)
T ss_dssp CEEEEETTSEEEEECGGGSCCSSSCCEE--GGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG-GGCCCS---
T ss_pred EEEEEeCCCeEEEEEHHHCCCcCCCCeE--eeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH-HhcccC---
Confidence 4788899999999875431 1111111 1113444556667766553223 57888999988777655 331100
Q ss_pred CCCcCCceeeCCCCCCCeEEE--e-cCCCeEEEEEcCCCEEEecCCCCCCCCC
Q 026218 89 GKHGETPEPFPLPTEASVVKA--A-AGWAHCVSVTEAGEVYTWGWRECVPSAK 138 (241)
Q Consensus 89 ~~~~~~p~~v~~~~~~~i~~i--a-~G~~hs~~lt~~G~vy~wG~n~~gQlG~ 138 (241)
..--..+.+..+..++.+ . -+.++.+++|++|++.-+-.++.-.+|+
T Consensus 120 ---r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 120 ---RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp ---TTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred ---cCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 000011122222333332 2 3677899999999999887776655554
No 39
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=58.01 E-value=45 Score=23.33 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=52.4
Q ss_pred cCceeEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCC
Q 026218 9 EENEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTS 88 (241)
Q Consensus 9 ~~~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~ 88 (241)
....-|.|..||.|-.-... ......+...++. ..++.|.....++-+++..+|+||+--.. .
T Consensus 14 ~~g~~L~I~~dG~V~Gt~~~----~~~~s~l~~~~v~----~G~V~I~g~~sg~yL~m~~~G~v~Gs~~~---s------ 76 (132)
T 3q7x_A 14 ETGQFLRINPDGTVDGTRDR----SDPGIQFQISPEG----NGEVLLRSTETGQFLRINPDGTVDGTRDR---S------ 76 (132)
T ss_dssp TTCCEEEECTTSBEEEECCT----TCGGGCEEEEEEE----TTEEEEEETTTCCEEEECTTSBEEEECC----C------
T ss_pred cCcEEEEECCCCcEEeecCC----CCCCcEEEEEecc----cCEEEEEEEcccEEEEECCCCCEeeccCC---C------
Confidence 34445777888888753211 1111122233332 24566666556688999999999975332 0
Q ss_pred CCCcCCceeeCCC-CCCCeEEEecCCCeEEEEEcCCCEEE
Q 026218 89 GKHGETPEPFPLP-TEASVVKAAAGWAHCVSVTEAGEVYT 127 (241)
Q Consensus 89 ~~~~~~p~~v~~~-~~~~i~~ia~G~~hs~~lt~~G~vy~ 127 (241)
........+... ....|+.+..|. -+|++.+|++|.
T Consensus 77 -~ec~flE~~~~~~g~v~ikg~~sg~--YLamnk~G~lyg 113 (132)
T 3q7x_A 77 -DPGIQFQISPEGNGEVLLRSTETGQ--FLRINPDGTVDG 113 (132)
T ss_dssp -CGGGCEEEEEEETTEEEEEETTTCC--EEEECTTSBEEE
T ss_pred -CCceeEEEEeecCcEEEEEeccCCe--EEEECCCCcCcC
Confidence 111111122111 112233344454 889999999996
No 40
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=57.11 E-value=1.2e+02 Score=27.85 Aligned_cols=117 Identities=14% Similarity=0.058 Sum_probs=66.9
Q ss_pred eEEEecCCcEEEcccCC--CCCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCccccCCC
Q 026218 13 KMEECKETVVYMWGYLP--GTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSG 89 (241)
Q Consensus 13 ~l~~t~~G~vy~wG~n~--g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~~~ 89 (241)
-|++|+.|++|.---.. .....+.+ ....+.+..+.+|..+...... +.++.|++|.+.-.-.. .+-..
T Consensus 517 ll~ft~~Gr~y~~~~~~lP~~~~~G~~--i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~-~~~~~----- 588 (716)
T 1zvu_A 517 VVFVDSTGRSYAIDPITLPSARGQGEP--LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN-DLVAR----- 588 (716)
T ss_dssp EEEEETTSEEEEECTTTSCCCC---CB--STTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG-GGCCC-----
T ss_pred EEEEecCCcEEEEEeeecccccccCee--HHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHH-Hhccc-----
Confidence 78899999999987543 11111111 2222344456677776664323 67788999988776554 22110
Q ss_pred CCcCCceeeCCCCCCCeEE---EecCCCeEEEEEcCCCEEEecCCCCCCCCC
Q 026218 90 KHGETPEPFPLPTEASVVK---AAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138 (241)
Q Consensus 90 ~~~~~p~~v~~~~~~~i~~---ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~ 138 (241)
...--..+.+..+..++. +..+..+.+++|++|++.-|-..+--.+|+
T Consensus 589 -~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 589 -NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp -STTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred -CccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 001112233333333333 224778999999999999998776544444
No 41
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.84 E-value=79 Score=25.73 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=56.7
Q ss_pred eeEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCccccCCCC
Q 026218 12 EKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSGK 90 (241)
Q Consensus 12 ~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~~~~ 90 (241)
..++...+|.|+.|-...+... ..........+..++....+ +.++-+.+|.|+.|-.. . ++.
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~--------~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~-~~~------ 168 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVS--------ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-S-QTK------ 168 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEE--------EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-T-CCE------
T ss_pred CEEEEECCCeEEEeeCCCCcEe--------EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc-C-CeE------
Confidence 3577788999999975432211 11111122334444442222 45555677888888654 2 111
Q ss_pred CcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCC
Q 026218 91 HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 91 ~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
...+. .....|..++......+.-+.+|.|+.|-...
T Consensus 169 ----~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~ 205 (401)
T 4aez_A 169 ----LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRI 205 (401)
T ss_dssp ----EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTS
T ss_pred ----EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEeccc
Confidence 11122 22456888887777777778899999997653
No 42
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=56.51 E-value=1.2e+02 Score=27.55 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=33.3
Q ss_pred CeEEEEeC-CCCEEEeecCCCCCccccCCCC----CcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecC
Q 026218 61 GFALATSE-SGKLITWGSADDEGQSYLTSGK----HGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGW 130 (241)
Q Consensus 61 ~h~~~lt~-~G~vy~wG~n~~~GqlG~~~~~----~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~ 130 (241)
+|+++.-. +|+||.+|-.+..+.. +.+.. .....+.+... + ..=..|++++-.+|+||++|=
T Consensus 442 ~hs~~~~~~~~~lyv~GG~~~~~~~-~~dv~~yd~~t~~W~~~~~~---p----~~R~~h~~~~~~~~~iyv~GG 508 (695)
T 2zwa_A 442 CHTFTTISRNNQLLLIGGRKAPHQG-LSDNWIFDMKTREWSMIKSL---S----HTRFRHSACSLPDGNVLILGG 508 (695)
T ss_dssp SCEEEEETTTTEEEEECCBSSTTCB-CCCCEEEETTTTEEEECCCC---S----BCCBSCEEEECTTSCEEEECC
T ss_pred ceEEEEEccCCEEEEEcCCCCCCCc-cccEEEEeCCCCcEEECCCC---C----CCcccceEEEEcCCEEEEECC
Confidence 48888876 8999999864111110 01100 01112222111 0 123568877766999999983
No 43
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.98 E-value=85 Score=25.53 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=36.6
Q ss_pred CeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecC--CCeEEEEEcCCCEEEecCCC
Q 026218 61 GFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 61 ~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~vy~wG~n~ 132 (241)
.+.++...+|.|+.|-.. . |++ ...+.......|..|+-- ..+.++-+.+|.|+.|-...
T Consensus 104 ~~l~~~~~d~~v~lw~~~-~-~~~----------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 104 LNVVAVALERNVYVWNAD-S-GSV----------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp TSEEEEEETTEEEEEETT-T-CCE----------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEECCCeEEEeeCC-C-CcE----------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 377888889999999765 1 221 122222224456666553 34555666789999996543
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=52.02 E-value=77 Score=24.17 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=21.5
Q ss_pred CCCeEEEecCCCeEEEEEcCCCEEEec
Q 026218 103 EASVVKAAAGWAHCVSVTEAGEVYTWG 129 (241)
Q Consensus 103 ~~~i~~ia~G~~hs~~lt~~G~vy~wG 129 (241)
...|..++.-....++-+.+|.|+.|-
T Consensus 104 ~~~i~~~~~~~~~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 104 QGNVCSLSFQDGVVISGSWDKTAKVWK 130 (313)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred ccCEEEEEecCCEEEEEeCCCCEEEEc
Confidence 456888888777778888899999995
No 45
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=50.83 E-value=91 Score=24.67 Aligned_cols=19 Identities=0% Similarity=-0.162 Sum_probs=15.6
Q ss_pred ceeEEEecCCcEEEcccCC
Q 026218 11 NEKMEECKETVVYMWGYLP 29 (241)
Q Consensus 11 ~~~l~~t~~G~vy~wG~n~ 29 (241)
...++++.+|++|+.+..+
T Consensus 26 v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp EEEEEECTTCCEEEEECTT
T ss_pred ceEEEECCCCCEEEEeCCC
Confidence 4479999999999988654
No 46
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=47.66 E-value=39 Score=28.41 Aligned_cols=103 Identities=11% Similarity=0.025 Sum_probs=57.2
Q ss_pred ceeEEEecCCcEEEcccCCCCCCCC-----------CCcccc-eeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecC
Q 026218 11 NEKMEECKETVVYMWGYLPGTSPEK-----------SPILSP-IPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSA 78 (241)
Q Consensus 11 ~~~l~~t~~G~vy~wG~n~g~~~~~-----------~~~~~p-~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n 78 (241)
..-|+++.+..++.-|.+++..... .....| ..+.++ ++..|+. .+..+++.++|.|..|--.
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp---~V~~l~f--d~~~L~v~~~~~l~v~dv~ 114 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIP---DVIFVCF--HGDQVLVSTRNALYSLDLE 114 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECT---TEEEEEE--ETTEEEEEESSEEEEEESS
T ss_pred ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCC---CeeEEEE--CCCEEEEEcCCcEEEEEch
Confidence 3468888888888877654211000 000233 222222 2667777 2356666688888888655
Q ss_pred CCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCC
Q 026218 79 DDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 79 ~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n 131 (241)
..-+. ..++.. ...+.++.+-....++++++|.|+.|=..
T Consensus 115 -sl~~~-----------~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 115 -ELSEF-----------RTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALDLR 154 (388)
T ss_dssp -STTCE-----------EEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred -hhhcc-----------Ccccee-ecceeeEEecCCCEEEEECCCCEEEEEcc
Confidence 22221 011111 12355665555557788999999999544
No 47
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=46.71 E-value=1.1e+02 Score=24.51 Aligned_cols=115 Identities=8% Similarity=-0.019 Sum_probs=62.2
Q ss_pred eeEEEecCCcEEEcccCCCCCCCCCC--cccceeeeecCCCCceeEEecC---CC-eEEEEeCCCCEEEeecCCCCCccc
Q 026218 12 EKMEECKETVVYMWGYLPGTSPEKSP--ILSPIPARLCGGDSWKDVCGGG---CG-FALATSESGKLITWGSADDEGQSY 85 (241)
Q Consensus 12 ~~l~~t~~G~vy~wG~n~g~~~~~~~--~~~p~~~~~~~~~~i~~v~~~~---~~-h~~~lt~~G~vy~wG~n~~~GqlG 85 (241)
+-|++|+.|++|.+-..+-....... ......+.+..+.+|..+.... .. +.+++|++|.+.-.-.. ++-...
T Consensus 55 ~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~-e~~~~~ 133 (307)
T 1zi0_A 55 HILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLT-EFNRLR 133 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG-GGTTCC
T ss_pred EEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH-Hhhccc
Confidence 47888999999998754311111111 1111223344556666554421 12 57778999987766544 221110
Q ss_pred cCCCCCcCCceeeCCCCCCCeEEE--ecCCCeEEEEEcCCCEEEecCCCC
Q 026218 86 LTSGKHGETPEPFPLPTEASVVKA--AAGWAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 86 ~~~~~~~~~p~~v~~~~~~~i~~i--a~G~~hs~~lt~~G~vy~wG~n~~ 133 (241)
..--..+.+..+..++.+ ..+.++.+++|++|+++-+-..+.
T Consensus 134 ------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v 177 (307)
T 1zi0_A 134 ------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV 177 (307)
T ss_dssp ------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGS
T ss_pred ------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHc
Confidence 000112233334445543 346678999999999998865544
No 48
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=45.95 E-value=1.1e+02 Score=24.17 Aligned_cols=114 Identities=13% Similarity=0.024 Sum_probs=65.7
Q ss_pred ceeEEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCC-eEEEEeCCCCEEEeecCCCCCccccCCC
Q 026218 11 NEKMEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCG-FALATSESGKLITWGSADDEGQSYLTSG 89 (241)
Q Consensus 11 ~~~l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~-h~~~lt~~G~vy~wG~n~~~GqlG~~~~ 89 (241)
..-+.+|++|.+.-.-..+-. .+. .-..-+++..+..+..+...... +.+++|++|++|.+-.. +.-.+|....
T Consensus 81 ~~~v~~T~~G~iKr~~l~~~~--~~~--~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~-eip~~gR~a~ 155 (276)
T 3no0_A 81 NRLLLATKKGYVKKIPLAEFE--YKA--QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVR-EVPPSTPGAR 155 (276)
T ss_dssp SEEEEEETTSEEEEEEGGGTT--TCS--TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGG-GSCBCCTTCC
T ss_pred CEEEEEeCCCEEEEEEHHHhh--hhc--CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhh-hCCCcCCCCC
Confidence 346677777777665432211 110 11223444455666665543222 79999999999999776 4544443211
Q ss_pred CCcCCceeeCCCCCCCeEEEecC--CCeEEEEEcCCCEEEecCCCC
Q 026218 90 KHGETPEPFPLPTEASVVKAAAG--WAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 90 ~~~~~p~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~vy~wG~n~~ 133 (241)
- -..+.+..+.+|+.+.+. ..+.+++|++|.+.-.-..++
T Consensus 156 G----v~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 156 G----VQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp C----EECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred C----EEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 0 012445556778876543 346788899998877765554
No 49
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=44.31 E-value=1.3e+02 Score=24.67 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=30.9
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n 131 (241)
+.+.-+.||.|+.|-.. . +++ ...+. .....+..++......++-+.+|.|+.|-..
T Consensus 291 ~l~~~~~d~~i~i~d~~-~-~~~----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 291 HVVSGSLDTSIRVWDVE-T-GNC----------IHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp EEEEEETTSCEEEEETT-T-CCE----------EEEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCeEEEEECC-C-CCE----------EEEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 55555666777777554 1 111 01111 1123455666656666667778888888543
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=43.66 E-value=2.2e+02 Score=27.14 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=17.1
Q ss_pred CCeEEEecCCCeEEEEEcCCCEEEecCC
Q 026218 104 ASVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 104 ~~i~~ia~G~~hs~~lt~~G~vy~wG~n 131 (241)
..|..++...+...+++.+|.|..|-..
T Consensus 1179 ~~v~~l~fs~dg~~l~s~~g~v~vwd~~ 1206 (1249)
T 3sfz_A 1179 GWVTDVCFSPDSKTLVSAGGYLKWWNVA 1206 (1249)
T ss_dssp SCCCEEEECTTSSCEEEESSSEEEBCSS
T ss_pred ceEEEEEECCCCCEEEECCCeEEEEECC
Confidence 4466666655555555556788888544
No 51
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=43.14 E-value=72 Score=25.41 Aligned_cols=27 Identities=11% Similarity=0.077 Sum_probs=17.7
Q ss_pred eEEEecCCC-eEEEEEcCCCEEEecCCC
Q 026218 106 VVKAAAGWA-HCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 106 i~~ia~G~~-hs~~lt~~G~vy~wG~n~ 132 (241)
+..|..|.. +.++++.+|++|+-....
T Consensus 165 ~~~i~~g~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 165 VDELTIGIQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EEEEECSSCBCCCEECTTSEEEEEBCCB
T ss_pred EEEEEcCCCccceEEcCCCCEEEEECCC
Confidence 334444443 678888889988776554
No 52
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=42.75 E-value=1.2e+02 Score=23.93 Aligned_cols=15 Identities=7% Similarity=-0.241 Sum_probs=10.7
Q ss_pred eEEEEeCCCCEEEee
Q 026218 62 FALATSESGKLITWG 76 (241)
Q Consensus 62 h~~~lt~~G~vy~wG 76 (241)
+.++++.+|+||.-.
T Consensus 87 ~~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQ 101 (328)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred cEEEEeCCCeEEEEE
Confidence 677776677777765
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=42.26 E-value=1.1e+02 Score=23.38 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=16.7
Q ss_pred CCeEEEecC--CCeEEEEEcCCCEEEecCC
Q 026218 104 ASVVKAAAG--WAHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 104 ~~i~~ia~G--~~hs~~lt~~G~vy~wG~n 131 (241)
..|..++.. ..+.++.+.+|.|+.|-..
T Consensus 266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 456666554 3345555667888888544
No 54
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=37.55 E-value=1.3e+02 Score=22.75 Aligned_cols=14 Identities=0% Similarity=0.135 Sum_probs=8.1
Q ss_pred eEEEec---CCcEEEcc
Q 026218 13 KMEECK---ETVVYMWG 26 (241)
Q Consensus 13 ~l~~t~---~G~vy~wG 26 (241)
.++++. ++.|+.|-
T Consensus 90 ~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYN 106 (286)
T ss_dssp EEEEEECGGGCEEEEEC
T ss_pred eEEEEcCCCCCEEEEEC
Confidence 355544 56777774
No 55
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=35.93 E-value=1.7e+02 Score=23.62 Aligned_cols=120 Identities=8% Similarity=-0.081 Sum_probs=66.9
Q ss_pred ceeEEEecCCcEEEcccCC----CCCCCCCCcccceeeeecCCCCceeEEecCC---C-eEEEEeCCCCEEEeecCCCCC
Q 026218 11 NEKMEECKETVVYMWGYLP----GTSPEKSPILSPIPARLCGGDSWKDVCGGGC---G-FALATSESGKLITWGSADDEG 82 (241)
Q Consensus 11 ~~~l~~t~~G~vy~wG~n~----g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~---~-h~~~lt~~G~vy~wG~n~~~G 82 (241)
.+-|++|+.|++|.+-..+ +....+.+ ....+++..+.+|..+..... . ..+++|++|.+.-.-.. .+-
T Consensus 51 d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~--i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~-e~~ 127 (323)
T 1wp5_A 51 DVLLLFTNKGNYLYCPVHELPDIRWKDLGQH--IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELK-HYK 127 (323)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCTTSCCEE--GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGG-GGC
T ss_pred CEEEEEECCCEEEEEEHHHCcCCCCCCCCcC--hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHH-Hhh
Confidence 3478899999999987543 11111111 112233445566665544331 2 57888999987776554 222
Q ss_pred ccccCCCCCcCCceeeCCCCCCCeEE--EecCCCeEEEEEcCCCEEEecCCCCCCCCC
Q 026218 83 QSYLTSGKHGETPEPFPLPTEASVVK--AAAGWAHCVSVTEAGEVYTWGWRECVPSAK 138 (241)
Q Consensus 83 qlG~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~hs~~lt~~G~vy~wG~n~~gQlG~ 138 (241)
... ...--..+.+..+..++. +..+.++.+++|++|+++-+-.++.-..|+
T Consensus 128 ~~~-----r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR 180 (323)
T 1wp5_A 128 AQR-----YSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGV 180 (323)
T ss_dssp CSC-----CSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCS
T ss_pred hcc-----ccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 110 000112223333444544 334678899999999999887665543343
No 56
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=34.71 E-value=1.6e+02 Score=22.84 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=16.9
Q ss_pred CeEEEecC--CCeEEEEEcCCCEEEecCCC
Q 026218 105 SVVKAAAG--WAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 105 ~i~~ia~G--~~hs~~lt~~G~vy~wG~n~ 132 (241)
.|..++.. ....++-+.+|.|+.|-...
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 45444433 34555667788888886554
No 57
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=34.43 E-value=1.6e+02 Score=22.73 Aligned_cols=30 Identities=3% Similarity=-0.014 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCeEEEEEcCCCEEEecCCC
Q 026218 103 EASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 103 ~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
...|..++...+..++.+.+|.|+.|-...
T Consensus 150 ~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp CCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred CCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 456888888777777778899999997654
No 58
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=33.18 E-value=1.9e+02 Score=23.27 Aligned_cols=96 Identities=10% Similarity=0.091 Sum_probs=46.5
Q ss_pred EEEecC-CcEEEcccCCCCCC-CCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCC
Q 026218 14 MEECKE-TVVYMWGYLPGTSP-EKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKH 91 (241)
Q Consensus 14 l~~t~~-G~vy~wG~n~g~~~-~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~ 91 (241)
++++.+ +.+|+...-++... .......-..+.......+..+..+. -+.++++.||+ +.+-.| . +.+
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~-~l~v~n-~-~~v------- 327 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRN-LMLTLD-G-GNV------- 327 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTT-EEEEEC-S-SCE-------
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCC-EEEEeC-C-CeE-------
Confidence 566766 77888654111111 00000011112222233344555545 58889999988 444455 3 333
Q ss_pred cCCceeeCCCCC--CCeEEE-ecCCC-eEEEEEcCCC
Q 026218 92 GETPEPFPLPTE--ASVVKA-AAGWA-HCVSVTEAGE 124 (241)
Q Consensus 92 ~~~p~~v~~~~~--~~i~~i-a~G~~-hs~~lt~~G~ 124 (241)
..+..... ..+..| ..|.. +.++++-+|+
T Consensus 328 ----~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 328 ----NVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ----EEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ----EEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 12222223 334554 35655 7778777764
No 59
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=32.75 E-value=1.7e+02 Score=22.65 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=13.3
Q ss_pred eEEEEeCCCCEEEeecC
Q 026218 62 FALATSESGKLITWGSA 78 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n 78 (241)
+.++++.+|++|.....
T Consensus 90 ~~i~~~~dg~l~v~~~~ 106 (333)
T 2dg1_A 90 AAIKIHKDGRLFVCYLG 106 (333)
T ss_dssp EEEEECTTSCEEEEECT
T ss_pred ceEEECCCCcEEEEeCC
Confidence 67888888888887654
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=32.14 E-value=1.9e+02 Score=22.95 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=17.6
Q ss_pred CCeEEEec--CCCeEEEEEcCCCEEEecCCC
Q 026218 104 ASVVKAAA--GWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 104 ~~i~~ia~--G~~hs~~lt~~G~vy~wG~n~ 132 (241)
..|..++. .....++-..+|.|+.|-...
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 34555544 334555666788899986443
No 61
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=30.07 E-value=2.3e+02 Score=23.21 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=34.7
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEec---CCCeEEEEEcCCCEEEecCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAA---GWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~---G~~hs~~lt~~G~vy~wG~n~ 132 (241)
+.+.-..+|.|+.|-.. ..+... ....+..........|..|+. +....++...+|.|+.|-...
T Consensus 196 ~l~s~~~dg~i~vwd~~-~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDHTICLWDIN-ATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTSCEEEEETT-SCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred eEEEEeCCCeEEEEeCC-CCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 44445667888888766 322110 000111111122345777766 344455666799999997654
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=29.40 E-value=2.3e+02 Score=23.10 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=21.1
Q ss_pred CCeEEEecCCCeEEEEEcCCCEEEecCCC
Q 026218 104 ASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 104 ~~i~~ia~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
..|..++....+.+.-+.+|.|+.|-...
T Consensus 280 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 308 (445)
T 2ovr_B 280 NRVYSLQFDGIHVVSGSLDTSIRVWDVET 308 (445)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEETTT
T ss_pred CceEEEEECCCEEEEEeCCCeEEEEECCC
Confidence 45777777666777777888898886543
No 63
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=29.27 E-value=1.8e+02 Score=21.81 Aligned_cols=17 Identities=6% Similarity=-0.105 Sum_probs=13.2
Q ss_pred eEEEEeCCCCEEEeecC
Q 026218 62 FALATSESGKLITWGSA 78 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n 78 (241)
+.++++.+|++|.....
T Consensus 144 ~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQ 160 (299)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred ceEEEcCCCCEEEEeCC
Confidence 67888888999886643
No 64
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=28.84 E-value=34 Score=23.90 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.8
Q ss_pred EEEEeCCCCEEEeecC
Q 026218 63 ALATSESGKLITWGSA 78 (241)
Q Consensus 63 ~~~lt~~G~vy~wG~n 78 (241)
++++++||++|+ |.|
T Consensus 31 Aal~~~dG~i~~-G~N 45 (130)
T 2z3g_A 31 SAALSSDGRIFT-GVN 45 (130)
T ss_dssp EEEEETTSCEEE-EEC
T ss_pred EEEEecCCeEEE-Eec
Confidence 456789999997 999
No 65
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=28.21 E-value=1.9e+02 Score=21.70 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=13.4
Q ss_pred ceeEEEecCCcEEEccc
Q 026218 11 NEKMEECKETVVYMWGY 27 (241)
Q Consensus 11 ~~~l~~t~~G~vy~wG~ 27 (241)
...++++.+|+||.-..
T Consensus 22 p~~i~~d~~g~l~v~~~ 38 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQH 38 (300)
T ss_dssp EEEEEECTTSCEEEEET
T ss_pred cceeeECCCCCEEEEcC
Confidence 34788999999998654
No 66
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=28.16 E-value=2.2e+02 Score=22.52 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=14.2
Q ss_pred CCeeEEEecCCcEEEeecCC
Q 026218 221 GRHTLILSGYRKYEAIGRFL 240 (241)
Q Consensus 221 ~~hs~alt~~G~vy~wG~~~ 240 (241)
..|++++ .+++||.+|-.+
T Consensus 110 ~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp SSEEEEE-ETTEEEEEECCC
T ss_pred ccceEEE-ECCEEEEEeCcC
Confidence 4577776 688999999643
No 67
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=28.07 E-value=1.9e+02 Score=21.69 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=13.1
Q ss_pred eEEEEeCCCCEEEeecC
Q 026218 62 FALATSESGKLITWGSA 78 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n 78 (241)
+.++++.+|++|.....
T Consensus 107 ~~i~~~~~g~l~v~~~~ 123 (300)
T 2qc5_A 107 YGITEGLNGDIWFTQLN 123 (300)
T ss_dssp EEEEECSTTCEEEEETT
T ss_pred ccceECCCCCEEEEccC
Confidence 77888888888877653
No 68
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=27.29 E-value=2.1e+02 Score=22.30 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=13.0
Q ss_pred CeEEEEeCCCCEEEeecC
Q 026218 61 GFALATSESGKLITWGSA 78 (241)
Q Consensus 61 ~h~~~lt~~G~vy~wG~n 78 (241)
+|+++. .+|+||.+|-.
T Consensus 151 ~~~~~~-~~~~iyv~GG~ 167 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGGK 167 (318)
T ss_dssp SCEEEE-ETTEEEEECCE
T ss_pred ccEEEE-ECCEEEEEcCC
Confidence 377766 57899999864
No 69
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=26.48 E-value=2.1e+02 Score=21.58 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=12.4
Q ss_pred eEEEEeCCCCEEEeecC
Q 026218 62 FALATSESGKLITWGSA 78 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n 78 (241)
..++++.+|++|.-...
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 56777788888877654
No 70
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=26.34 E-value=2.1e+02 Score=21.48 Aligned_cols=17 Identities=6% Similarity=0.190 Sum_probs=12.6
Q ss_pred eEEEEeCCCCEEEeecC
Q 026218 62 FALATSESGKLITWGSA 78 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n 78 (241)
+.++++.+|+||.-...
T Consensus 102 ~~i~~~~~g~l~v~~~~ 118 (299)
T 2z2n_A 102 YGITEGPNGDIWFTEMN 118 (299)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred eeeEECCCCCEEEEecC
Confidence 67778888888876543
No 71
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=26.29 E-value=2.2e+02 Score=21.91 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=20.9
Q ss_pred CCCeEEEecCCC-----eEEEEEcCCCEEEecCCC
Q 026218 103 EASVVKAAAGWA-----HCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 103 ~~~i~~ia~G~~-----hs~~lt~~G~vy~wG~n~ 132 (241)
...|..|+...+ ..+.-+.+|.|..|-...
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~ 73 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD 73 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC
Confidence 467888887765 344446689999996554
No 72
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=25.78 E-value=2.8e+02 Score=22.90 Aligned_cols=113 Identities=11% Similarity=0.072 Sum_probs=63.3
Q ss_pred eeEEEecCCcEEEcccCC----CCCCCCCCcccceeeeecCCCCceeEEecC----CCeEEEEeCCCCEEEeecCCCCCc
Q 026218 12 EKMEECKETVVYMWGYLP----GTSPEKSPILSPIPARLCGGDSWKDVCGGG----CGFALATSESGKLITWGSADDEGQ 83 (241)
Q Consensus 12 ~~l~~t~~G~vy~wG~n~----g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~----~~h~~~lt~~G~vy~wG~n~~~Gq 83 (241)
+-|++|+.|++|.+--.+ +....+.+ ....+++..+.+|..+.... ..+.+++|++|.+.-.-.. .|-.
T Consensus 59 ~ll~fT~~G~~~~~~~~eip~~~r~a~G~~--i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~-e~~~ 135 (370)
T 3l6v_A 59 TLLTFTSSGKVFWLPVHQLPEAGSNARGRP--IINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLS-EFAF 135 (370)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTSCCEE--GGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG-GGCS
T ss_pred EEEEEeCCCeEEEEEHHHCcCCCcccCCcC--HhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH-Hhhc
Confidence 367899999999887443 11111111 11223344566777665542 1268889999988777655 3322
Q ss_pred cccCCCCCcCCceeeCCCCCCCeEE--EecCCCeEEEEEcCCCEEEecCCCC
Q 026218 84 SYLTSGKHGETPEPFPLPTEASVVK--AAAGWAHCVSVTEAGEVYTWGWREC 133 (241)
Q Consensus 84 lG~~~~~~~~~p~~v~~~~~~~i~~--ia~G~~hs~~lt~~G~vy~wG~n~~ 133 (241)
.. ..--..+.+..+..++. +..+..+.+++|++|++.-+-..+-
T Consensus 136 ~~------~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v 181 (370)
T 3l6v_A 136 RL------ARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 181 (370)
T ss_dssp CC------TTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGS
T ss_pred cc------CCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEcccc
Confidence 10 00011122322334443 3456778999999999988865544
No 73
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=25.59 E-value=2.3e+02 Score=21.81 Aligned_cols=13 Identities=8% Similarity=-0.028 Sum_probs=9.6
Q ss_pred CCeeEEEecCCcE
Q 026218 221 GRHTLILSGYRKY 233 (241)
Q Consensus 221 ~~hs~alt~~G~v 233 (241)
..+.+.++.+|++
T Consensus 243 ~~~~~~~~~~g~~ 255 (276)
T 3no2_A 243 HPQLVEIDSEGKV 255 (276)
T ss_dssp CCSEEEECTTSBE
T ss_pred CceEEEECCCCCE
Confidence 3368888888875
No 74
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=24.80 E-value=2.5e+02 Score=21.96 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=14.5
Q ss_pred eEEEEeCCCCEEEeecC
Q 026218 62 FALATSESGKLITWGSA 78 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n 78 (241)
..++++.+|++|..+..
T Consensus 27 ~~va~d~~G~l~v~~~~ 43 (329)
T 3fvz_A 27 SGVALDSKNNLVIFHRG 43 (329)
T ss_dssp EEEEECTTCCEEEEECT
T ss_pred eEEEECCCCCEEEEeCC
Confidence 67889999999988776
No 75
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=24.73 E-value=44 Score=23.89 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=12.7
Q ss_pred EEEEeCCCCEEEeecC
Q 026218 63 ALATSESGKLITWGSA 78 (241)
Q Consensus 63 ~~~lt~~G~vy~wG~n 78 (241)
++++++||+||. |.|
T Consensus 40 Aal~~~dG~i~~-G~N 54 (146)
T 2fr5_A 40 AALLTGDGRIFS-GCN 54 (146)
T ss_dssp EEEEETTSCEEE-EEC
T ss_pred EEEEeCCCcEEE-EEe
Confidence 466889999996 999
No 76
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=24.10 E-value=2.7e+02 Score=22.03 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=29.9
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCC-eEEEEEcCCCEEEecCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWA-HCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~-hs~~lt~~G~vy~wG~n 131 (241)
..+.-..+|.|+.|-.. . ++ ....+.. ....|..++...+ ..++.+.+|.|+.|-..
T Consensus 261 ~l~~~~~d~~i~i~d~~-~-~~----------~~~~~~~-~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGG-N-GN----------SQNCFYG-HSQSIVSASWVGDDKVISCSMDGSVRLWSLK 318 (425)
T ss_dssp EEEEEETTSCEEEECSS-S-BS----------CSEEECC-CSSCEEEEEEETTTEEEEEETTSEEEEEETT
T ss_pred EEEEEcCCCEEEEEECC-C-Cc----------cceEecC-CCccEEEEEECCCCEEEEEeCCCcEEEEECC
Confidence 44455567777777544 1 11 1112211 1344665554333 55666678888888543
No 77
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=23.79 E-value=2.1e+02 Score=21.97 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=12.4
Q ss_pred CeEEEEeCCCCEEEeecC
Q 026218 61 GFALATSESGKLITWGSA 78 (241)
Q Consensus 61 ~h~~~lt~~G~vy~wG~n 78 (241)
.|++++. +++||.+|-.
T Consensus 197 ~~~~~~~-~~~iyv~GG~ 213 (302)
T 2xn4_A 197 GAGVGVL-NNLLYAVGGH 213 (302)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred cccEEEE-CCEEEEECCC
Confidence 3776655 6799999864
No 78
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=23.64 E-value=46 Score=23.63 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=12.6
Q ss_pred EEEEeCCCCEEEeecC
Q 026218 63 ALATSESGKLITWGSA 78 (241)
Q Consensus 63 ~~~lt~~G~vy~wG~n 78 (241)
++++++||+||+ |.|
T Consensus 36 AAl~~~dG~i~~-G~N 50 (142)
T 1r5t_A 36 CSILTNNDVIFT-GAN 50 (142)
T ss_dssp EEEECTTSCEEE-EEC
T ss_pred EEEEeCCCCEEE-EEe
Confidence 456889999996 988
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=23.20 E-value=2.6e+02 Score=21.65 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=31.6
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecC---------------CCeEEEEEcCCCEE
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG---------------WAHCVSVTEAGEVY 126 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G---------------~~hs~~lt~~G~vy 126 (241)
..+..+.+|.|..|-.. .... ..+..+. .....|..++.- ....++-+.+|.|+
T Consensus 117 ~l~~~~~d~~i~v~d~~-~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 185 (379)
T 3jrp_A 117 LLLVASSDGKVSVVEFK-ENGT---------TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185 (379)
T ss_dssp EEEEEETTSEEEEEECC-TTSC---------CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEE
T ss_pred EEEEecCCCcEEEEecC-CCCc---------eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEE
Confidence 45556777888888665 2111 1111111 113346655543 34566667789999
Q ss_pred EecC
Q 026218 127 TWGW 130 (241)
Q Consensus 127 ~wG~ 130 (241)
.|-.
T Consensus 186 i~d~ 189 (379)
T 3jrp_A 186 IWKY 189 (379)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9944
No 80
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=22.89 E-value=3.1e+02 Score=22.35 Aligned_cols=58 Identities=14% Similarity=0.278 Sum_probs=33.0
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCC--CeEEEEEcCCCEEEecCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW--AHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~vy~wG~n~ 132 (241)
..+.-+.+|.|+.|-.. . +++ ...+. .....|..++... ...+.-+.+|.|+.|-...
T Consensus 282 ~l~~~~~d~~i~vwd~~-~-~~~----------~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVA-Q-MKC----------LYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp EEEEEETTSCEEEEETT-T-TEE----------EEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EEEEEeCCCeEEEEECC-C-CcE----------EEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 56666778888888654 2 211 01111 1134465555533 3566667789999996543
No 81
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=22.60 E-value=2.6e+02 Score=21.39 Aligned_cols=71 Identities=4% Similarity=-0.156 Sum_probs=38.7
Q ss_pred CceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCC---CeEEEEEcCCCEEE
Q 026218 51 SWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGW---AHCVSVTEAGEVYT 127 (241)
Q Consensus 51 ~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~---~hs~~lt~~G~vy~ 127 (241)
.+..++... ...++.+.+|.|+.|-.. ..+. .............|..|+.-. ...++-+.+|.|..
T Consensus 152 ~v~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i 220 (342)
T 1yfq_A 152 KIFTMDTNS-SRLIVGMNNSQVQWFRLP-LCED---------DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220 (342)
T ss_dssp CEEEEEECS-SEEEEEESTTEEEEEESS-CCTT---------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEE
T ss_pred ceEEEEecC-CcEEEEeCCCeEEEEECC-cccc---------ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEE
Confidence 344444422 245566778888888765 2111 111222222234566666543 45666677888888
Q ss_pred ecCCC
Q 026218 128 WGWRE 132 (241)
Q Consensus 128 wG~n~ 132 (241)
|-...
T Consensus 221 ~~~~~ 225 (342)
T 1yfq_A 221 EFFDD 225 (342)
T ss_dssp EECCT
T ss_pred EEEcC
Confidence 86554
No 82
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=21.45 E-value=3.7e+02 Score=22.70 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=18.5
Q ss_pred CCcEEEEecC-CCeeEEEecCCcEEEee
Q 026218 211 GVKITKVAAG-GRHTLILSGYRKYEAIG 237 (241)
Q Consensus 211 ~~~i~~Ia~G-~~hs~alt~~G~vy~wG 237 (241)
...|..++.- ....++.+.+|.|..|-
T Consensus 372 ~~~v~~~~~~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 372 SNLIVSLDNSKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp CSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred cCceEEEEECCCcEEEEEeCCCCEEEEE
Confidence 4567777764 34556667888888884
No 83
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=21.32 E-value=56 Score=22.97 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.6
Q ss_pred EEEEeCCCCEEEeecC
Q 026218 63 ALATSESGKLITWGSA 78 (241)
Q Consensus 63 ~~~lt~~G~vy~wG~n 78 (241)
++++++||+|| .|.|
T Consensus 28 Aal~~~dG~i~-~G~N 42 (136)
T 1uwz_A 28 AALLTKDGKVY-RGCN 42 (136)
T ss_dssp EEEEETTSCEE-EEEC
T ss_pred EEEEeCCCeEE-EEeC
Confidence 45678999999 5999
No 84
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=21.16 E-value=2.8e+02 Score=21.22 Aligned_cols=12 Identities=17% Similarity=0.017 Sum_probs=7.4
Q ss_pred eCCCCEEEeecC
Q 026218 67 SESGKLITWGSA 78 (241)
Q Consensus 67 t~~G~vy~wG~n 78 (241)
..++.|+.|-..
T Consensus 18 ~~~~~v~~~d~~ 29 (349)
T 1jmx_B 18 NYPNNLHVVDVA 29 (349)
T ss_dssp ETTTEEEEEETT
T ss_pred CCCCeEEEEECC
Confidence 456777777543
No 85
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=20.83 E-value=3.8e+02 Score=22.61 Aligned_cols=59 Identities=5% Similarity=0.025 Sum_probs=33.6
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecC------------CCeEEEEEcCCCEEEec
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAG------------WAHCVSVTEAGEVYTWG 129 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G------------~~hs~~lt~~G~vy~wG 129 (241)
+.+.-+.+|.|+.|-.. . +++ ...+.......|..++.. ....+.-+.+|.|+.|-
T Consensus 502 ~l~~~~~dg~i~iw~~~-~-~~~----------~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~ 569 (615)
T 1pgu_A 502 YIAAGDVMGKILLYDLQ-S-REV----------KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 569 (615)
T ss_dssp EEEEEETTSCEEEEETT-T-TEE----------EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCeEEEeeCC-C-Ccc----------eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence 55556677888888665 2 222 011111123457776663 34556667789999996
Q ss_pred CCC
Q 026218 130 WRE 132 (241)
Q Consensus 130 ~n~ 132 (241)
...
T Consensus 570 ~~~ 572 (615)
T 1pgu_A 570 VKR 572 (615)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 86
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=20.78 E-value=3.4e+02 Score=22.06 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=37.4
Q ss_pred eEEEEeCCCCEEEeecCCCCCccccCCCCCcCCceeeCCCCCCCeEEEecCCCeEEEEEcCCCEEEecCCC
Q 026218 62 FALATSESGKLITWGSADDEGQSYLTSGKHGETPEPFPLPTEASVVKAAAGWAHCVSVTEAGEVYTWGWRE 132 (241)
Q Consensus 62 h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~~p~~v~~~~~~~i~~ia~G~~hs~~lt~~G~vy~wG~n~ 132 (241)
..+.-+.||.|+.|-.. . |++ ...+. .....|..++....+.+.-+.+|.|..|-...
T Consensus 324 ~l~sg~~dg~i~vwd~~-~-~~~----------~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLE-N-GEL----------MYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEEEETTSCEEEEETT-T-TEE----------EEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEeCCCcEEEEECC-C-CcE----------EEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 55556677888888654 1 221 01111 12345777877778888888999999997654
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=20.43 E-value=3e+02 Score=21.15 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=0.0
Q ss_pred EEEecCCcEEEcccCCCCCCCCCCcccceeeeecCCCCceeEEecCCCeEEEEeCCCCEEEeecCCCCCccccCCCCCcC
Q 026218 14 MEECKETVVYMWGYLPGTSPEKSPILSPIPARLCGGDSWKDVCGGGCGFALATSESGKLITWGSADDEGQSYLTSGKHGE 93 (241)
Q Consensus 14 l~~t~~G~vy~wG~n~g~~~~~~~~~~p~~~~~~~~~~i~~v~~~~~~h~~~lt~~G~vy~wG~n~~~GqlG~~~~~~~~ 93 (241)
+.-..+|.|+.|-...+............++.......-..+..-+. +.+.-..+|.|+.|-.. .......
T Consensus 84 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~--------~~~~~~~ 154 (357)
T 3i2n_A 84 ATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPR--------QKDDPVA 154 (357)
T ss_dssp EEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTT--------SCSSCSE
T ss_pred EEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCC--------CCCCcce
Q ss_pred CceeeCCCCCCCeEEEe------cCCCeEEEEEcCCCEEEecCCCCCCCCCccccCCCCCccccCCCCCcCCCCCCCCCC
Q 026218 94 TPEPFPLPTEASVVKAA------AGWAHCVSVTEAGEVYTWGWRECVPSAKVTRDFGSAGSFQKDSTGKQSALPTEQAPP 167 (241)
Q Consensus 94 ~p~~v~~~~~~~i~~ia------~G~~hs~~lt~~G~vy~wG~n~~gQlG~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 167 (241)
............|..++ ......++-+.+|.|+.|-..
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------------------------ 198 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR------------------------------------ 198 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT------------------------------------
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc------------------------------------
Q ss_pred CCcccCceeeeeceeeeccCCCCCCCCCCccceecceEeecCCCCcEEEEec---CCCeeEEEecCCcEEEe
Q 026218 168 SDKRAGEEVVKRRKTSSAREESENPASGDEFFTLSPCLVTLNPGVKITKVAA---GGRHTLILSGYRKYEAI 236 (241)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~~~i~~Ia~---G~~hs~alt~~G~vy~w 236 (241)
...............-..+.. -....++-+.+|.|+.|
T Consensus 199 -------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 199 -------------------------------NMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp -------------------------------TTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred -------------------------------cCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
No 88
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=20.29 E-value=3e+02 Score=21.15 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=17.7
Q ss_pred CeEEEecCCCeEEEEEcCCCEEEecCC
Q 026218 105 SVVKAAAGWAHCVSVTEAGEVYTWGWR 131 (241)
Q Consensus 105 ~i~~ia~G~~hs~~lt~~G~vy~wG~n 131 (241)
.+..+..-....++.+.++.++.|-..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 172 RCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp CEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred CceEEEecCCeeEEEeCCCcEEEEEec
Confidence 455555555667777777888877554
Done!